BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032128
MDWSFVHKTWEKWASTSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTE
FVDFVKLNKLQTDCFFIGKNQYIVTTIHENWFCARCLNTVKAAGEGAIVMQTKAFLLVAL
YDGSIGPASRAMASADQLAWQLSRRNL

High Scoring Gene Products

Symbol, full name Information P value
AT4G19400 protein from Arabidopsis thaliana 1.7e-50
DDB_G0274253 gene from Dictyostelium discoideum 0.00024

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032128
        (147 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2140421 - symbol:AT4G19400 species:3702 "Arabi...   525  1.7e-50   1
DICTYBASE|DDB_G0274253 - symbol:DDB_G0274253 species:4468...   101  0.00024   1


>TAIR|locus:2140421 [details] [associations]
            symbol:AT4G19400 species:3702 "Arabidopsis thaliana"
            [GO:0003779 "actin binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0007010 "cytoskeleton organization" evidence=IEA]
            [GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0009062 "fatty
            acid catabolic process" evidence=RCA] InterPro:IPR002097
            GO:GO:0007010 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0015629
            SUPFAM:SSF55770 eggNOG:NOG280782 EMBL:BT024681 IPI:IPI00517264
            RefSeq:NP_567584.1 UniGene:At.22429 ProteinModelPortal:Q29Q75
            STRING:Q29Q75 PRIDE:Q29Q75 DNASU:827681 EnsemblPlants:AT4G19400.1
            GeneID:827681 KEGG:ath:AT4G19400 TAIR:At4g19400
            HOGENOM:HOG000006362 InParanoid:Q29Q75 PhylomeDB:Q29Q75
            ProtClustDB:CLSN2689515 Genevestigator:Q29Q75 Uniprot:Q29Q75
        Length = 148

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 99/147 (67%), Positives = 122/147 (82%)

Query:     1 MDWSFVHKTWEKWAST-SVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLT 59
             MD +FV + W+KW +T +VGSSG PLKAA+LINYDPTGPSRLLSTIA++EG+   PVDL 
Sbjct:     1 MDSAFVDRAWDKWVTTGNVGSSGNPLKAAILINYDPTGPSRLLSTIAKQEGIDIYPVDLK 60

Query:    60 EFVDFVKLNKLQTDCFFIGKNQYIVTTIHENWFCARCLNTVKAAGEGAIVMQTKAFLLVA 119
             +F+DF++   L T+ F +G NQYI+T+IHENWF ARCLNT + AGEGAIVMQT  ++LVA
Sbjct:    61 QFIDFMRCGNLPTETFVLGSNQYIITSIHENWFAARCLNTSQPAGEGAIVMQTAVYVLVA 120

Query:   120 LYDGSIGPASRAMASADQLAWQLSRRN 146
             LYDGSIG AS+AMA+ADQ A QLSR+N
Sbjct:   121 LYDGSIGSASQAMAAADQFASQLSRKN 147


>DICTYBASE|DDB_G0274253 [details] [associations]
            symbol:DDB_G0274253 species:44689 "Dictyostelium
            discoideum" [GO:0030036 "actin cytoskeleton organization"
            evidence=IEA] [GO:0003779 "actin binding" evidence=IEA]
            Pfam:PF00235 InterPro:IPR002097 dictyBase:DDB_G0274253
            GO:GO:0007010 GO:GO:0015629 EMBL:AAFI02000012 SUPFAM:SSF55770
            RefSeq:XP_644012.1 ProteinModelPortal:Q86KK0
            EnsemblProtists:DDB0167811 GeneID:8619442 KEGG:ddi:DDB_G0274253
            eggNOG:NOG280782 InParanoid:Q86KK0 OMA:IPYVENY Uniprot:Q86KK0
        Length = 192

 Score = 101 (40.6 bits), Expect = 0.00024, P = 0.00024
 Identities = 28/118 (23%), Positives = 59/118 (50%)

Query:    10 WEKWASTSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKLNK 69
             +EK+ +  VG     + +A + + D + P ++ + +  ++G+     +  + +D +    
Sbjct:    65 YEKYVNQLVGKF---IMSAAMFSKDFSTP-KIKNIVLAQKGLLIKVNEAIQIIDGINKGT 120

Query:    70 LQTDCFFIGKNQYIVTTIHENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSIGP 127
             L  +   I  ++YI+TT+    +    LNT    G G I++  + ++LV+LY  SI P
Sbjct:   121 LHQELISISGSKYIITTVKPRSYYG--LNTNLNVGGGIIIVSLEKYILVSLYPASILP 176


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      147       147   0.00091  103 3  11 22  0.44    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  162 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.56u 0.09s 13.65t   Elapsed:  00:00:00
  Total cpu time:  13.56u 0.09s 13.65t   Elapsed:  00:00:00
  Start:  Mon May 20 16:35:32 2013   End:  Mon May 20 16:35:32 2013

Back to top