Query 032128
Match_columns 147
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 09:58:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00235 Profilin: Profilin; 99.4 1.9E-13 4.1E-18 97.7 4.7 118 9-142 1-121 (121)
2 cd00148 PROF Profilin binds ac 99.1 2.9E-10 6.2E-15 84.3 6.3 121 10-145 2-125 (127)
3 smart00392 PROF Profilin. Bind 99.0 1.3E-09 2.8E-14 80.7 6.5 121 9-145 2-127 (129)
4 PTZ00316 profilin; Provisional 97.9 3.2E-05 6.9E-10 61.4 6.4 121 9-143 2-146 (150)
5 KOG1755 Profilin [Cytoskeleton 96.8 0.0035 7.6E-08 49.0 5.6 122 10-145 3-126 (128)
6 PF07485 DUF1529: Domain of Un 83.5 0.96 2.1E-05 34.7 2.4 31 51-93 63-93 (123)
7 COG3563 KpsC Capsule polysacch 63.4 3.6 7.8E-05 39.5 1.2 56 15-70 68-127 (671)
8 PF02337 Gag_p10: Retroviral G 61.2 5.3 0.00012 29.5 1.5 27 41-67 13-39 (90)
9 KOG3603 Predicted phospholipas 61.0 6.8 0.00015 36.5 2.5 82 18-114 122-204 (456)
10 COG4642 Uncharacterized protei 53.4 7.3 0.00016 31.2 1.2 41 80-125 18-61 (139)
11 PF14258 DUF4350: Domain of un 52.9 10 0.00022 24.7 1.6 15 55-69 50-64 (70)
12 PF15499 Peptidase_C98: Ubiqui 52.1 9.9 0.00021 33.4 1.9 61 23-87 163-224 (275)
13 PF09907 DUF2136: Uncharacteri 49.2 15 0.00032 26.1 2.1 31 55-88 21-55 (76)
14 PF06463 Mob_synth_C: Molybden 46.9 9.3 0.0002 28.6 0.9 31 69-100 46-79 (128)
15 PF03736 EPTP: EPTP domain; I 42.8 32 0.00069 21.2 2.7 21 67-87 12-32 (44)
16 PRK14981 DNA-directed RNA poly 39.7 29 0.00064 25.8 2.5 44 23-67 66-109 (112)
17 KOG2066 Vacuolar assembly/sort 39.6 24 0.00051 35.3 2.5 58 7-68 423-480 (846)
18 PRK00432 30S ribosomal protein 39.6 29 0.00062 22.8 2.2 23 72-98 6-28 (50)
19 TIGR03435 Soli_TIGR03435 Solib 39.0 28 0.00061 29.5 2.6 21 34-55 197-217 (237)
20 TIGR03826 YvyF flagellar opero 37.2 13 0.00029 29.1 0.4 40 56-98 58-102 (137)
21 PF07430 PP1: Phloem filament 35.5 18 0.0004 30.6 1.0 23 79-101 37-59 (202)
22 PRK00164 moaA molybdenum cofac 33.7 59 0.0013 26.8 3.7 57 58-124 212-281 (331)
23 PF06743 FAST_1: FAST kinase-l 31.6 49 0.0011 22.3 2.4 31 23-53 3-33 (71)
24 KOG2543 Origin recognition com 31.3 9.9 0.00021 35.3 -1.3 96 4-130 225-320 (438)
25 CHL00086 apcA allophycocyanin 29.5 6.8 0.00015 31.1 -2.3 60 46-105 11-100 (161)
26 PRK08485 DNA polymerase III su 29.4 35 0.00077 28.7 1.7 32 36-67 92-137 (206)
27 PF06888 Put_Phosphatase: Puta 29.1 22 0.00047 29.6 0.5 41 49-90 68-109 (234)
28 PRK13361 molybdenum cofactor b 28.8 62 0.0013 27.1 3.1 29 71-100 231-262 (329)
29 PF10815 ComZ: ComZ; InterPro 27.6 45 0.00098 23.3 1.7 23 44-66 19-41 (56)
30 PF07129 DUF1381: Protein of u 27.1 44 0.00096 22.4 1.5 11 80-90 1-11 (44)
31 PRK05303 flgI flagellar basal 26.9 81 0.0018 28.7 3.6 39 39-77 328-367 (367)
32 PF05883 Baculo_RING: Baculovi 25.9 7.7 0.00017 30.7 -2.6 32 80-112 11-47 (134)
33 PF12543 DUF3738: Protein of u 25.8 44 0.00095 26.8 1.6 23 34-57 155-177 (189)
34 PF02119 FlgI: Flagellar P-rin 24.7 91 0.002 27.9 3.5 40 38-77 302-342 (342)
35 cd00071 GMPK Guanosine monopho 24.2 1.7E+02 0.0037 21.4 4.4 35 47-82 42-76 (137)
36 TIGR03342 dsrC_tusE_dsvC sulfu 24.2 68 0.0015 24.3 2.3 26 41-67 26-51 (108)
37 PF06543 Lac_bphage_repr: Lact 23.5 28 0.00061 23.8 0.1 13 10-26 20-32 (49)
38 KOG0256 1-aminocyclopropane-1- 23.2 43 0.00092 31.6 1.2 39 22-72 224-262 (471)
39 PF04828 GFA: Glutathione-depe 23.2 63 0.0014 21.0 1.7 28 87-114 45-75 (92)
40 PF00625 Guanylate_kin: Guanyl 23.1 2.1E+02 0.0045 21.5 4.7 62 17-83 7-80 (183)
41 smart00072 GuKc Guanylate kina 23.1 1.7E+02 0.0036 22.1 4.2 61 17-82 7-79 (184)
42 TIGR02884 spore_pdaA delta-lac 22.3 1.6E+02 0.0035 23.4 4.2 21 59-79 53-73 (224)
43 KOG2935 Ataxin 3/Josephin [Gen 21.1 22 0.00048 31.7 -1.0 16 83-98 106-121 (315)
No 1
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=99.42 E-value=1.9e-13 Score=97.72 Aligned_cols=118 Identities=23% Similarity=0.441 Sum_probs=99.4
Q ss_pred HHHHHhh-hccCCCChhhhhhhhhccCCCCCcchhhhHHhhhCc-ccccchhhHHHHHHhhC-CceeeeEEecCceEEEE
Q 032128 9 TWEKWAS-TSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGM-KADPVDLTEFVDFVKLN-KLQTDCFFIGKNQYIVT 85 (147)
Q Consensus 9 ~wEKwa~-~~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG~-~~~~~e~~~fiDfi~~n-nL~tE~f~Ig~nqYlVT 85 (147)
.|+.|+. ++++. |. +..|++++.|. ++.|..++. .++|.|+..|++.++.+ .++.+-|.|++.||.++
T Consensus 1 sW~~~i~~~L~~~-~~-~~~aaI~~~dG-------~vwA~s~~f~~~~~~E~~~i~~~f~~~~~~~~~gi~l~G~kY~~~ 71 (121)
T PF00235_consen 1 SWQDYIDEQLIGT-GN-ITKAAIIGSDG-------SVWASSPGFSNISPEEAKAIIKAFNNPSKFPSNGITLGGKKYIVL 71 (121)
T ss_dssp THHHHHHTHHHTT-SS-ESEEEEEETTS-------SEEEEETTGGGCSHHHHHHHHHHHHSSSHHHHH-EEETTEEEEEE
T ss_pred ChhHHHHHHhccc-Cc-EeEEEEEcCCC-------CEEEecCCCCCCCHHHHHHHHHHhcCchhcccCCeEEcCcEeEEE
Confidence 3999999 67774 55 99999999665 377888898 99999999999988874 67778999999999999
Q ss_pred eeecceeeeecccccccCCcceEEEEehhhhhhhhccCCcchhhHHHHHHHHHHHHh
Q 032128 86 TIHENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSIGPASRAMASADQLAWQL 142 (147)
Q Consensus 86 sIhe~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gSi~~as~am~~~dqf~~ql 142 (147)
.-.++..++|| ..+|++|+++..+|+|++|+.++ .+.++-.++++||..|
T Consensus 72 ~~d~~~i~~k~------~~~G~~i~kt~~~ivIg~y~~~~-~~~~~~~~v~~lA~yL 121 (121)
T PF00235_consen 72 RADDNSIYGKK------GKGGIIIVKTKQAIVIGMYDESI-QPGNCNKAVEKLADYL 121 (121)
T ss_dssp EEETTEEEEEE------TTEEEEEEECSSEEEEEEEETTS-THHHHHHHHHHHHHHH
T ss_pred ecCCceEEeeC------CCCcEEEEECCCEEEEEEeCCCC-CHHHHHHHHHHHHhhC
Confidence 98887777775 37889999999999999999995 4455888899998765
No 2
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=99.08 E-value=2.9e-10 Score=84.31 Aligned_cols=121 Identities=19% Similarity=0.366 Sum_probs=99.0
Q ss_pred HHHHhh-hccCCCChhhhhhhhhccCCCCCcchhhhHHhhhC-cccccchhhHHHHHHhhC-CceeeeEEecCceEEEEe
Q 032128 10 WEKWAS-TSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREG-MKADPVDLTEFVDFVKLN-KLQTDCFFIGKNQYIVTT 86 (147)
Q Consensus 10 wEKwa~-~~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG-~~~~~~e~~~fiDfi~~n-nL~tE~f~Ig~nqYlVTs 86 (147)
|+-|+. .++| +| -+.+|+++..|+ ++ +-|.-.| ..++|.|++.++++++.. .++.+=+.+++.||.++.
T Consensus 2 Wq~yvd~~L~~-~g-~~~~aAI~g~d~--g~----vwA~s~~~f~~t~~E~~~i~~~f~d~~~~~~~Gi~l~G~KY~~l~ 73 (127)
T cd00148 2 WQAYVDDNLLG-TG-KVDSAAIVGHDD--GS----VWAASAGGFNLTPEEVGTLVAGFKDPDGVFSTGLTLGGQKYMVIR 73 (127)
T ss_pred hHHHHHHHHhh-cC-CcCEEEEEecCC--CC----eEEecCCCCccCHHHHHHHHHHccCccccccCCEEECCeEEEEEe
Confidence 999999 5888 44 588888899985 33 2345566 899999999999998754 566788999999999999
Q ss_pred eecceeeeecccccccCCcceEEEEehhhhhhhhccCCcchhhHHHHHHHHHHHHhhhh
Q 032128 87 IHENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSIGPASRAMASADQLAWQLSRR 145 (147)
Q Consensus 87 Ihe~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gSi~~as~am~~~dqf~~ql~r~ 145 (147)
.-++++++|- .++|++|+.|.-.|+|++|+.+ ..+.++-.+|.+|+..|-..
T Consensus 74 ~d~~~i~~kk------~~~Gi~i~kT~~~ivi~~y~e~-~~~g~~~~~v~~ladYL~~~ 125 (127)
T cd00148 74 ADDRSIYGKK------GAGGVVIVKTKQALVIGMYEEG-VQPGQANKVVEKLADYLRSQ 125 (127)
T ss_pred cCccEEEeee------CCCeEEEEECCCEEEEEEcCCC-CCHHHHHHHHHHHHHHHHHc
Confidence 9998888763 2389999999999999999999 45556778888999888654
No 3
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=98.98 E-value=1.3e-09 Score=80.68 Aligned_cols=121 Identities=21% Similarity=0.401 Sum_probs=97.3
Q ss_pred HHHHHhhh-ccCCCChhhhhhhhhccCCCCCcchhhhHHhhhC--c-ccccchhhHHHHHHhhC-CceeeeEEecCceEE
Q 032128 9 TWEKWAST-SVGSSGEPLKAALLINYDPTGPSRLLSTIAEREG--M-KADPVDLTEFVDFVKLN-KLQTDCFFIGKNQYI 83 (147)
Q Consensus 9 ~wEKwa~~-~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG--~-~~~~~e~~~fiDfi~~n-nL~tE~f~Ig~nqYl 83 (147)
.|+.|+.. .++ +| -+.+|+++..|. ++-|.-.| . .+.|.|++.+++.++.. .++.+-+.+++.||.
T Consensus 2 sWq~yvd~~l~~-~g-~~~~AaI~g~dG-------svWA~s~g~~f~~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~Ky~ 72 (129)
T smart00392 2 SWQAYVDNLLVG-SG-CVDAAAIGGKDG-------SVWAASAGGNFQKITPEEIAAIAALFNSLAAVFSNGLTLGGQKYM 72 (129)
T ss_pred ChHHHHHHHhhc-cC-CCcEEEEEeCCC-------CeeeccCCCCCCcCCHHHHHHHHHHccCcchhccCCeEECCeEEE
Confidence 39999998 566 34 677888888874 45566677 5 57899999999998765 577778999999999
Q ss_pred EEeeecceeeeecccccccCCcceEEEEehhhhhhhhccCCcchhhHHHHHHHHHHHHhhhh
Q 032128 84 VTTIHENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSIGPASRAMASADQLAWQLSRR 145 (147)
Q Consensus 84 VTsIhe~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gSi~~as~am~~~dqf~~ql~r~ 145 (147)
+...-++..++| ..++|++|+.|.-.|+|++|+.++ .+.++-.+|+.++..|-..
T Consensus 73 ~~~~d~~~i~~k------k~~~Gv~i~kT~~aivI~~y~e~~-~~g~~~~~v~~ladYL~~~ 127 (129)
T smart00392 73 VIRADDRSIMGK------KGAGGVVIVKTKQALIIGMYKEGV-QPGQANKTVEKLADYLRSS 127 (129)
T ss_pred EEEecCcEEEee------cCCceEEEEECCCEEEEEECCCCC-ChHHHHHHHHHHHHHHHHc
Confidence 999888888864 368999999999999999999984 4456677788888887654
No 4
>PTZ00316 profilin; Provisional
Probab=97.91 E-value=3.2e-05 Score=61.42 Aligned_cols=121 Identities=13% Similarity=0.208 Sum_probs=86.6
Q ss_pred HHHHHhhh-ccCCCChhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhhC-CceeeeEEecCceEEEEe
Q 032128 9 TWEKWAST-SVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKLN-KLQTDCFFIGKNQYIVTT 86 (147)
Q Consensus 9 ~wEKwa~~-~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~n-nL~tE~f~Ig~nqYlVTs 86 (147)
.|.-|+.. ++| ||+. +.|+++..+. .| +-|.-.|..++|.|+..|++.++.. .|+..=+.+++.||++..
T Consensus 2 SWQaYVD~~L~g-sg~v-~kAAIiG~~D--Gs----vWA~S~gF~lspeE~~~I~~~F~d~~~l~~~Gi~l~G~KY~~lr 73 (150)
T PTZ00316 2 SWQAYVDDSLIG-SGNM-HSAAIVGLAD--GS----YWAYGGSYIPQPEEVAHILKCLGNFSLVQSSGVTIYGVKFFGLQ 73 (150)
T ss_pred CHHHHHHhhhhc-cCCc-ceEEEEecCC--CC----EeecCCCCccCHHHHHHHHHHhcCCccccCCCEEEcceEEEEEE
Confidence 38999996 777 7754 4455566532 22 2445678899999999999988753 566667899999998875
Q ss_pred e----ecceeeeecccccccCCcceEEEEehhhhhhhhccCCc------------------chhhHHHHHHHHHHHHhh
Q 032128 87 I----HENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSI------------------GPASRAMASADQLAWQLS 143 (147)
Q Consensus 87 I----he~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gSi------------------~~as~am~~~dqf~~ql~ 143 (147)
- .++..++| -.++|++++.|.-.|+|+.|+..+ ....++-.+|+.+++-|-
T Consensus 74 ~~~d~d~~~i~gK------Kg~~G~~i~kT~qaiiI~~y~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~Ve~LadYL~ 146 (150)
T PTZ00316 74 SGTEGDMKYIFFK------KGAAGGCIYTSKQTAIIAVYGNPGDTSSLQQDLEKNEAHAVAVNPADCNTTVKRIAEYLI 146 (150)
T ss_pred eccCCCcceEEEe------cCCCeEEEEEcCCEEEEEEeCCcccccccccccccccccccccCHHHHHHHHHHHHHHHH
Confidence 4 23444433 456899999999999999998842 234455566777776654
No 5
>KOG1755 consensus Profilin [Cytoskeleton]
Probab=96.76 E-value=0.0035 Score=49.00 Aligned_cols=122 Identities=20% Similarity=0.335 Sum_probs=94.3
Q ss_pred HHHHhhhccCCCChhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHh-hCCceeeeEEecCceEEEEeee
Q 032128 10 WEKWASTSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVK-LNKLQTDCFFIGKNQYIVTTIH 88 (147)
Q Consensus 10 wEKwa~~~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~-~nnL~tE~f~Ig~nqYlVTsIh 88 (147)
|.-|+..+..-++ -++.|+++-+|- . ++=|.-.|.+++|+|+.-|+...+ .+.|..-=..+++.||+|-.--
T Consensus 3 Wq~Yvd~~l~~~~-~v~~AAIvg~~~--~----SVWA~S~~f~~~~~e~~~~v~~F~d~~~~~~~Gl~L~Gqkylv~~ge 75 (128)
T KOG1755|consen 3 WQAYVDDHLLGTG-HVTRAAIVGYDG--G----SVWAASAGFNVKPSEIPAIVAGFKDPGGLAGTGLTLGGQKYLVVRGE 75 (128)
T ss_pred HHHHHHHhhcccc-ccceeeEEecCC--C----eeEEecCCCcccHHHHHHHHhcccCcccccccceeecccEEEEEecc
Confidence 7788887555444 788899999974 2 677888888999999999876555 4556666788999999988877
Q ss_pred -cceeeeecccccccCCcceEEEEehhhhhhhhccCCcchhhHHHHHHHHHHHHhhhh
Q 032128 89 -ENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSIGPASRAMASADQLAWQLSRR 145 (147)
Q Consensus 89 -e~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gSi~~as~am~~~dqf~~ql~r~ 145 (147)
+..+. -+...+|+.|+.|..++++++|+--+-|+. +-.+++++++-|.+.
T Consensus 76 ~~~~~~------gk~~~~gv~i~kT~~~li~~~y~e~v~~g~-~~k~ve~LadYL~~~ 126 (128)
T KOG1755|consen 76 EGRVIR------GKEGTGGVTIKKTGQALIFSIYKEGVQPGQ-CNKVVESLADYLRES 126 (128)
T ss_pred cceEEe------cccCCCcEEEEEcceEEEEEEcCCCCCHHH-HHHHHHHHHHHHHhc
Confidence 44444 356778999999999999999997766654 455678888877664
No 6
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=83.51 E-value=0.96 Score=34.69 Aligned_cols=31 Identities=16% Similarity=0.427 Sum_probs=26.9
Q ss_pred cccccchhhHHHHHHhhCCceeeeEEecCceEEEEeeecceee
Q 032128 51 MKADPVDLTEFVDFVKLNKLQTDCFFIGKNQYIVTTIHENWFC 93 (147)
Q Consensus 51 ~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqYlVTsIhe~wf~ 93 (147)
+-+.+.|+.|+++.++++.+. ||+||.||+.
T Consensus 63 ~vll~~EV~pvi~aL~~~GI~------------vtAlHNH~l~ 93 (123)
T PF07485_consen 63 FVLLEDEVNPVISALRKNGIE------------VTALHNHWLF 93 (123)
T ss_pred EEecHHHHHHHHHHHHHCCce------------EEEEeccccc
Confidence 345678999999999999874 8999999987
No 7
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=63.42 E-value=3.6 Score=39.55 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=46.6
Q ss_pred hhccCCCChhh----hhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhhCCc
Q 032128 15 STSVGSSGEPL----KAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKLNKL 70 (147)
Q Consensus 15 ~~~VG~sgkpl----kaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~nnL 70 (147)
+-..|++|.|- +--+=|=||.|.||||-+.|..|+-++=+.-..++-||+|.+-+|
T Consensus 68 sl~lgv~~~p~fs~v~ddigiyyd~t~psrlenli~~~d~~~e~~~qa~~aieli~~~~l 127 (671)
T COG3563 68 SLGLGVEGYPPFSIVYDDIGIYYDTTRPSRLENLILAADTMSETLAQAKQAIELILQHHL 127 (671)
T ss_pred hhcCCcCCCCCceeEeecceeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34678888664 334567899999999999999999998888888999999998776
No 8
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=61.16 E-value=5.3 Score=29.46 Aligned_cols=27 Identities=22% Similarity=0.582 Sum_probs=20.1
Q ss_pred hhhhHHhhhCcccccchhhHHHHHHhh
Q 032128 41 LLSTIAEREGMKADPVDLTEFVDFVKL 67 (147)
Q Consensus 41 Ll~~iaeQeG~~~~~~e~~~fiDfi~~ 67 (147)
.|..+.++.|++++..|+..|+++|.+
T Consensus 13 ~Lk~lLk~rGi~v~~~~L~~f~~~i~~ 39 (90)
T PF02337_consen 13 ILKHLLKERGIRVKKKDLINFLSFIDK 39 (90)
T ss_dssp HHHHHHHCCT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCeeecHHHHHHHHHHHHH
Confidence 456778899999999999999999976
No 9
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=60.95 E-value=6.8 Score=36.49 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=60.7
Q ss_pred cCCCChhhhhhhhhccCCCCCcchhhhHHhhhC-cccccchhhHHHHHHhhCCceeeeEEecCceEEEEeeecceeeeec
Q 032128 18 VGSSGEPLKAALLINYDPTGPSRLLSTIAEREG-MKADPVDLTEFVDFVKLNKLQTDCFFIGKNQYIVTTIHENWFCARC 96 (147)
Q Consensus 18 VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG-~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqYlVTsIhe~wf~ARc 96 (147)
.|.+| ++..+-.++-|.++......++||+| ...+-+|+..+.- +|.||+-++.+...-+-+ =.
T Consensus 122 ~~~~g--IsiriA~~~p~~~~~~~d~~~Le~~Gaa~vr~id~~~l~g---~GvlHtKf~vvD~khfyl----------GS 186 (456)
T KOG3603|consen 122 LAKSG--VKIRIAQSYPSGGPPNADLQVLESLGLAQVRSIDMNRLTG---GGVLHTKFWVVDIKHFYL----------GS 186 (456)
T ss_pred hccCC--eEEEEEeecCCCCCCcccHHHHHhCCCceEEeeccccccc---CceEEEEEEEEecceEEE----------ec
Confidence 34444 78888889988888888999999999 8888888887654 999999998876544322 24
Q ss_pred ccccccCCcceEEEEehh
Q 032128 97 LNTVKAAGEGAIVMQTKA 114 (147)
Q Consensus 97 vNt~~p~GeG~IVmq~~a 114 (147)
-|-...++-+++.++...
T Consensus 187 aNfDWrSlTqvkElGv~v 204 (456)
T KOG3603|consen 187 ANFDWRSLTQVKELGVVV 204 (456)
T ss_pred cccchhhccceeEeeeEE
Confidence 455666677776666543
No 10
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.37 E-value=7.3 Score=31.22 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=31.0
Q ss_pred ceEEEEeeecceeeeecccccc---cCCcceEEEEehhhhhhhhccCCc
Q 032128 80 NQYIVTTIHENWFCARCLNTVK---AAGEGAIVMQTKAFLLVALYDGSI 125 (147)
Q Consensus 80 nqYlVTsIhe~wf~ARcvNt~~---p~GeG~IVmq~~ayiLValy~gSi 125 (147)
.|+.+-|.-.-..||||.++-+ ++|+|.-=.+.+.- |+||+
T Consensus 18 g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~-----Y~Gtl 61 (139)
T COG4642 18 GKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGRI-----YTGTL 61 (139)
T ss_pred ccccccceEEeccccEEeeeEeeeecCCCccEEEcCCcc-----ccceE
Confidence 4555555556679999999999 99999887766653 77775
No 11
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=52.92 E-value=10 Score=24.75 Aligned_cols=15 Identities=13% Similarity=0.485 Sum_probs=11.0
Q ss_pred cchhhHHHHHHhhCC
Q 032128 55 PVDLTEFVDFVKLNK 69 (147)
Q Consensus 55 ~~e~~~fiDfi~~nn 69 (147)
|.|+.++.+|+++||
T Consensus 50 ~~~~~~l~~~v~~G~ 64 (70)
T PF14258_consen 50 PEEAEALLEWVEAGN 64 (70)
T ss_pred hHHHHHHHHHHHcCC
Confidence 577777777777775
No 12
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=52.11 E-value=9.9 Score=33.43 Aligned_cols=61 Identities=28% Similarity=0.306 Sum_probs=48.6
Q ss_pred hhhhhhhhhc-cCCCCCcchhhhHHhhhCcccccchhhHHHHHHhhCCceeeeEEecCceEEEEee
Q 032128 23 EPLKAALLIN-YDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKLNKLQTDCFFIGKNQYIVTTI 87 (147)
Q Consensus 23 kplkaA~Lin-~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqYlVTsI 87 (147)
.|+.|+-.=. .....+|..-..+.| ++.|+=|-+|+++..+|+||.=.|.+-+.+|=||+|
T Consensus 163 hPLnA~h~~pCn~C~~ksQ~rkMvle----kv~~vfmLHFVeGLP~ndl~~ysF~feg~~Y~Vt~V 224 (275)
T PF15499_consen 163 HPLNAVHFGPCNSCNSKSQRRKMVLE----KVPPVFMLHFVEGLPHNDLQHYSFHFEGCLYQVTSV 224 (275)
T ss_pred CcccccccCCCcccCChHHhHhhhhh----cCchhhhhhhhccCCccCCCccceeecCeeEEEEEE
Confidence 5666653321 123667777777777 578999999999999999999999999999999997
No 13
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=49.24 E-value=15 Score=26.07 Aligned_cols=31 Identities=39% Similarity=0.678 Sum_probs=20.3
Q ss_pred cchhhHH---HHHHhhCCceeeeEEecCceE-EEEeee
Q 032128 55 PVDLTEF---VDFVKLNKLQTDCFFIGKNQY-IVTTIH 88 (147)
Q Consensus 55 ~~e~~~f---iDfi~~nnL~tE~f~Ig~nqY-lVTsIh 88 (147)
|.||++. .|.++ |+. =.|.||+|+| ||..|+
T Consensus 21 ~~elk~~f~~ad~v~-~~~--~vFnI~GN~yRlI~~I~ 55 (76)
T PF09907_consen 21 PAELKQQFPSADIVK-NNR--VVFNIGGNKYRLIAKID 55 (76)
T ss_pred HHHHHHHCcchhhhc-CCE--EEEEcCCCcEEEEEEEE
Confidence 4444433 46666 333 3699999999 777776
No 14
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=46.90 E-value=9.3 Score=28.61 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=17.5
Q ss_pred CceeeeEEecCceE---EEEeeecceeeeeccccc
Q 032128 69 KLQTDCFFIGKNQY---IVTTIHENWFCARCLNTV 100 (147)
Q Consensus 69 nL~tE~f~Ig~nqY---lVTsIhe~wf~ARcvNt~ 100 (147)
+=.-.+|.+.+.+- +|++++++ ||+.|-=-+
T Consensus 46 ~~pa~~y~~~g~~g~vG~I~~~s~~-FC~~CNRiR 79 (128)
T PF06463_consen 46 NGPARYYRIPGGKGRVGFISPVSNP-FCSSCNRIR 79 (128)
T ss_dssp T-SSEEEEETTT--EEEEE-TTTS---GGG--EEE
T ss_pred CCcceEEEECCCCcEEEEEeCCCCC-CCCcCCEEE
Confidence 44567788877773 89999999 999985433
No 15
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=42.81 E-value=32 Score=21.21 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=17.0
Q ss_pred hCCceeeeEEecCceEEEEee
Q 032128 67 LNKLQTDCFFIGKNQYIVTTI 87 (147)
Q Consensus 67 ~nnL~tE~f~Ig~nqYlVTsI 87 (147)
++-...|.|+|++..||+-+=
T Consensus 12 ~~~~~~e~F~i~~~~fl~~a~ 32 (44)
T PF03736_consen 12 RGARDVEPFSIGGDQFLAVAS 32 (44)
T ss_pred cceeEEEEEEECCEEEEEEEe
Confidence 455678999999999998653
No 16
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=39.66 E-value=29 Score=25.76 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=38.0
Q ss_pred hhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhh
Q 032128 23 EPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKL 67 (147)
Q Consensus 23 kplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~ 67 (147)
++-.+|.+.|--|..+.-+..++... ...+.+.++.+++|-+++
T Consensus 66 ~e~~a~~I~nL~P~~~dElrai~~~~-~~~~~~e~l~~ILd~l~k 109 (112)
T PRK14981 66 KEKTAVKIADILPETRDELRAIFAKE-RYTLSPEELDEILDIVKK 109 (112)
T ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHh-ccCCCHHHHHHHHHHHHH
Confidence 67789999999999999887777655 778999999999998875
No 17
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.62 E-value=24 Score=35.32 Aligned_cols=58 Identities=26% Similarity=0.343 Sum_probs=39.8
Q ss_pred HHHHHHHhhhccCCCChhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhhC
Q 032128 7 HKTWEKWASTSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKLN 68 (147)
Q Consensus 7 ~r~wEKwa~~~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~n 68 (147)
-.+||-|+.+++=.---+.=|+ |=|++|.||.|.+-|--=..+-..+...|.+.|+.=
T Consensus 423 ~~eWe~~V~~f~e~~~l~~Ia~----~lPt~~~rL~p~vYemvLve~L~~~~~~F~e~i~~W 480 (846)
T KOG2066|consen 423 AAEWELWVFKFAELDQLTDIAP----YLPTGPPRLKPLVYEMVLVEFLASDVKGFLELIKEW 480 (846)
T ss_pred HHHHHHHHHHhccccccchhhc----cCCCCCcccCchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3689999999876433333333 459999999998876544444447777888777753
No 18
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=39.55 E-value=29 Score=22.80 Aligned_cols=23 Identities=22% Similarity=0.613 Sum_probs=17.4
Q ss_pred eeeEEecCceEEEEeeecceeeeeccc
Q 032128 72 TDCFFIGKNQYIVTTIHENWFCARCLN 98 (147)
Q Consensus 72 tE~f~Ig~nqYlVTsIhe~wf~ARcvN 98 (147)
.++|.|++++ |+-+++ ||.||-|
T Consensus 6 ~~~y~v~~~~--v~~~~~--fCP~Cg~ 28 (50)
T PRK00432 6 REYYEVDGGK--VKRKNK--FCPRCGS 28 (50)
T ss_pred eeeEEECCCE--EEEccC--cCcCCCc
Confidence 4788999887 665555 9999965
No 19
>TIGR03435 Soli_TIGR03435 Solibacter paralogous family TIGR03435. This model describes a paralogous family of about 40 proteins found in Solibacter usitatus Ellin6076, one of the first three members of the Acidobacteria to be sequenced, and nowhere else. The family is well-diversified, with few pairs showing greater than 50 % pairwise identity. Two members of the family are longer, multidomain proteins with (two different) fused peptidase domains.
Probab=39.05 E-value=28 Score=29.49 Aligned_cols=21 Identities=48% Similarity=1.029 Sum_probs=19.2
Q ss_pred CCCCCcchhhhHHhhhCccccc
Q 032128 34 DPTGPSRLLSTIAEREGMKADP 55 (147)
Q Consensus 34 dptgpSRLl~~iaeQeG~~~~~ 55 (147)
||++|| |...|.||-|+++.+
T Consensus 197 ~~~~~s-L~~ALq~QLGLKLe~ 217 (237)
T TIGR03435 197 DPSGPS-LFTALQEQLGLKLEP 217 (237)
T ss_pred CCccch-HHHHHHHhhCceEcc
Confidence 788998 999999999999987
No 20
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=37.16 E-value=13 Score=29.06 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=30.2
Q ss_pred chhhHHHHHHhhCCceeeeEEecCceEEE-----Eeeecceeeeeccc
Q 032128 56 VDLTEFVDFVKLNKLQTDCFFIGKNQYIV-----TTIHENWFCARCLN 98 (147)
Q Consensus 56 ~e~~~fiDfi~~nnL~tE~f~Ig~nqYlV-----TsIhe~wf~ARcvN 98 (147)
++..++..|||.|.|+.--| +|-++- +.|.+.+||..|.+
T Consensus 58 Vs~~~I~~~IreGRL~~~~~---~nl~~~CE~CG~~I~~Gr~C~~C~~ 102 (137)
T TIGR03826 58 VSEKLILKFIREGRLQLKHF---PNLGYPCERCGTSIREGRLCDSCAG 102 (137)
T ss_pred cCHHHHHHHHHcCCeeccCC---CCCcCcccccCCcCCCCCccHHHHH
Confidence 46778999999999986543 344432 67999999998865
No 21
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=35.53 E-value=18 Score=30.61 Aligned_cols=23 Identities=22% Similarity=0.602 Sum_probs=18.0
Q ss_pred CceEEEEeeecceeeeecccccc
Q 032128 79 KNQYIVTTIHENWFCARCLNTVK 101 (147)
Q Consensus 79 ~nqYlVTsIhe~wf~ARcvNt~~ 101 (147)
++--.-.+|+|.|||--|.|+-+
T Consensus 37 ~~~l~~~~v~egwy~el~~~~~~ 59 (202)
T PF07430_consen 37 GDSLKFRSVVEGWYFELCPNSLK 59 (202)
T ss_pred ccceeeeeeeeceeeccccccee
Confidence 34445679999999999999854
No 22
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=33.72 E-value=59 Score=26.83 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=33.5
Q ss_pred hhHHHHHHhhC----------CceeeeEEecCceE---EEEeeecceeeeecccccccCCcceEEEEehhhhhhhhccCC
Q 032128 58 LTEFVDFVKLN----------KLQTDCFFIGKNQY---IVTTIHENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGS 124 (147)
Q Consensus 58 ~~~fiDfi~~n----------nL~tE~f~Ig~nqY---lVTsIhe~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gS 124 (147)
..+|.+.+++. +-...+|.+.+.+. +|++.+++ ||+.|--.+..+ .-.+..+||.-.
T Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~i~~~s~~-fC~~c~r~r~t~---------dG~l~~Cl~~~~ 281 (331)
T PRK00164 212 GAEIRARLAERGWTLQPRARSGGPAQYFRHPDYGGEIGLIAPVTHD-FCASCNRLRLTA---------DGKLHLCLFAED 281 (331)
T ss_pred HHHHHHHHHhccCcccccCCCCCCCEEEEECCCCeEEEEEeCCCCc-ccccCCeEEEcC---------CCcEEEcCCCCC
Confidence 44566666654 33456676643333 77777777 999887544333 234556666653
No 23
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=31.62 E-value=49 Score=22.33 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=23.1
Q ss_pred hhhhhhhhhccCCCCCcchhhhHHhhhCccc
Q 032128 23 EPLKAALLINYDPTGPSRLLSTIAEREGMKA 53 (147)
Q Consensus 23 kplkaA~Lin~dptgpSRLl~~iaeQeG~~~ 53 (147)
+.+.+=.-+||+|+....+.+.+.+.-.-.+
T Consensus 3 ~il~~fa~LNy~P~~~~~f~~~~~~~L~~~l 33 (71)
T PF06743_consen 3 SILLPFARLNYQPPNAEEFFEKLIERLESYL 33 (71)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHhc
Confidence 4456667899999888889888877655443
No 24
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=31.33 E-value=9.9 Score=35.33 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhhccCCCChhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhhCCceeeeEEecCceEE
Q 032128 4 SFVHKTWEKWASTSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKLNKLQTDCFFIGKNQYI 83 (147)
Q Consensus 4 ~~~~r~wEKwa~~~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqYl 83 (147)
..++++|-||..+-++ -+.||+.-.||...+.+--|-...-+..++.=...-.|-+.+| -.+---+|+
T Consensus 225 ~~~~~~wpky~epi~~-----------~~i~~~d~~~L~r~ik~~L~~~~~~~~~~e~~~s~~e~~~~~~-~~~~~r~~~ 292 (438)
T KOG2543|consen 225 SLISLAWPKYCEPITK-----------GKIDPTDKARLWRHIKPFLGSDLNEIYRREIESSEDENRLAME-DKSLNRKLV 292 (438)
T ss_pred HHHHHHHHhhcccccc-----------CCCChhHHHHHHHHhhHhhhhhhHHHHHhcCchhhhhhhhhhh-hhhhhhhhh
Confidence 3578899999999888 2456666667777777776666666666544444444555555 333344565
Q ss_pred EEeeecceeeeecccccccCCcceEEEEehhhhhhhhccCCcchhhH
Q 032128 84 VTTIHENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSIGPASR 130 (147)
Q Consensus 84 VTsIhe~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gSi~~as~ 130 (147)
.-+=-|=.|+ ++|+|+|-|=+|-.||-.
T Consensus 293 ~~~~i~ls~y-------------------sKyLLIAAylASyNpar~ 320 (438)
T KOG2543|consen 293 ALSEIELSYY-------------------SKYLLIAAYLASYNPARL 320 (438)
T ss_pred ccccccchHH-------------------HHHHHHHHHHhccCchhc
Confidence 5552344455 479999999998887743
No 25
>CHL00086 apcA allophycocyanin alpha subunit
Probab=29.47 E-value=6.8 Score=31.13 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=44.4
Q ss_pred HhhhCcccccchhhHHHHHHhhCC--------------------------ceeeeEEecCceE----EEEeeecceeeee
Q 032128 46 AEREGMKADPVDLTEFVDFVKLNK--------------------------LQTDCFFIGKNQY----IVTTIHENWFCAR 95 (147)
Q Consensus 46 aeQeG~~~~~~e~~~fiDfi~~nn--------------------------L~tE~f~Ig~nqY----lVTsIhe~wf~AR 95 (147)
++++|==+...||.++-+|++.++ -+.++|.-|+|.| -=...-+-|++-|
T Consensus 11 AD~~gRyls~~eL~~l~~~~~~~~~Rl~aa~~l~~na~~IV~~A~~~l~~~~P~l~~~gG~~y~~~r~~aC~RD~~~~LR 90 (161)
T CHL00086 11 ADAEARYLSPGELDRIKSFVLSGQRRLRIAQILTDNRERIVKQGGQQLFQKRPDIVSPGGNAYGEEMTATCLRDLDYYLR 90 (161)
T ss_pred HHhccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcCCcCCCCCCccHHHHHHHHHHHHHhhh
Confidence 567777778888888888887777 4567788888888 4446677788888
Q ss_pred cccccccCCc
Q 032128 96 CLNTVKAAGE 105 (147)
Q Consensus 96 cvNt~~p~Ge 105 (147)
|++..--+|+
T Consensus 91 ~itYai~agd 100 (161)
T CHL00086 91 LVTYGIVAGD 100 (161)
T ss_pred hhheeeecCC
Confidence 8887666554
No 26
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=29.38 E-value=35 Score=28.66 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=27.8
Q ss_pred CCCcchhhhHHhhh--------------CcccccchhhHHHHHHhh
Q 032128 36 TGPSRLLSTIAERE--------------GMKADPVDLTEFVDFVKL 67 (147)
Q Consensus 36 tgpSRLl~~iaeQe--------------G~~~~~~e~~~fiDfi~~ 67 (147)
+.|.+++|||...- ++.+++.++.++.+|+++
T Consensus 92 ~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 92 KSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred CChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 56889999998654 689999999999999987
No 27
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=29.15 E-value=22 Score=29.65 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=32.2
Q ss_pred hCcccccchhhHHHHHHhhCCceeeeEEec-CceEEEEeeecc
Q 032128 49 EGMKADPVDLTEFVDFVKLNKLQTDCFFIG-KNQYIVTTIHEN 90 (147)
Q Consensus 49 eG~~~~~~e~~~fiDfi~~nnL~tE~f~Ig-~nqYlVTsIhe~ 90 (147)
++|.+.| .|.+|+.+++++..+.|...|+ +|.|.|.+|.|+
T Consensus 68 ~~ip~~p-gm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~ 109 (234)
T PF06888_consen 68 RSIPIDP-GMKELLRFLAKNQRGFDLIIISDANSFFIETILEH 109 (234)
T ss_pred HcCCCCc-cHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHh
Confidence 6777766 7889999998888899998886 577777666554
No 28
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=28.77 E-value=62 Score=27.10 Aligned_cols=29 Identities=14% Similarity=0.442 Sum_probs=18.8
Q ss_pred eeeeEEecCceE---EEEeeecceeeeeccccc
Q 032128 71 QTDCFFIGKNQY---IVTTIHENWFCARCLNTV 100 (147)
Q Consensus 71 ~tE~f~Ig~nqY---lVTsIhe~wf~ARcvNt~ 100 (147)
...+|.+.+.+. +|+++.++ ||+.|-=.+
T Consensus 231 ~~~~~~~~~~~~~ig~I~~~s~~-fC~~Cnr~r 262 (329)
T PRK13361 231 PARYYTMADSPIHIGFISPHSHN-FCHECNRVR 262 (329)
T ss_pred CCeEEEECCCCeEEEEEcCCCcc-ccccCCeEE
Confidence 345666644332 67888887 999993333
No 29
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=27.56 E-value=45 Score=23.32 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=19.5
Q ss_pred hHHhhhCcccccchhhHHHHHHh
Q 032128 44 TIAEREGMKADPVDLTEFVDFVK 66 (147)
Q Consensus 44 ~iaeQeG~~~~~~e~~~fiDfi~ 66 (147)
-..+.+||.+.+.+++||++-+-
T Consensus 19 ~~L~k~GIeLsme~~qP~m~L~~ 41 (56)
T PF10815_consen 19 EELDKKGIELSMEMLQPLMQLLT 41 (56)
T ss_pred HHHHHcCccCCHHHHHHHHHHHH
Confidence 35678999999999999998653
No 30
>PF07129 DUF1381: Protein of unknown function (DUF1381); InterPro: IPR009812 This entry is represented by Bacteriophage 92, Orf59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=27.06 E-value=44 Score=22.38 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=9.0
Q ss_pred ceEEEEeeecc
Q 032128 80 NQYIVTTIHEN 90 (147)
Q Consensus 80 nqYlVTsIhe~ 90 (147)
.|||||+|.+.
T Consensus 1 tQyLI~~f~ds 11 (44)
T PF07129_consen 1 TQYLITEFTDS 11 (44)
T ss_pred CcEEEEEEEcC
Confidence 48999998764
No 31
>PRK05303 flgI flagellar basal body P-ring protein; Provisional
Probab=26.92 E-value=81 Score=28.66 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=34.0
Q ss_pred cchhhhHHhhhCcccccchhhHHHHHHhh-CCceeeeEEe
Q 032128 39 SRLLSTIAEREGMKADPVDLTEFVDFVKL-NKLQTDCFFI 77 (147)
Q Consensus 39 SRLl~~iaeQeG~~~~~~e~~~fiDfi~~-nnL~tE~f~I 77 (147)
..|-.++..=.-+.+.|.|++.++..+|+ |.||-|+..+
T Consensus 328 ~~l~~lV~aLN~lG~tp~DlIaILqalk~aGAL~AeL~v~ 367 (367)
T PRK05303 328 ATLADLVRALNALGATPRDLIAILQALKAAGALHAELEVI 367 (367)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCceEEEeC
Confidence 44888888888899999999999999986 8999998653
No 32
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=25.93 E-value=7.7 Score=30.71 Aligned_cols=32 Identities=16% Similarity=0.661 Sum_probs=26.2
Q ss_pred ceEEEEeeeccee-----eeecccccccCCcceEEEEe
Q 032128 80 NQYIVTTIHENWF-----CARCLNTVKAAGEGAIVMQT 112 (147)
Q Consensus 80 nqYlVTsIhe~wf-----~ARcvNt~~p~GeG~IVmq~ 112 (147)
.+|+=+.|++-|. |+=|+++... ++|+|.|--
T Consensus 11 k~~l~~lf~~~w~~~~~EC~IC~~~I~~-~~GvV~vt~ 47 (134)
T PF05883_consen 11 KYYLERLFNDQWPRCTVECQICFDRIDN-NDGVVYVTD 47 (134)
T ss_pred HHHHHHHHHHHccccCeeehhhhhhhhc-CCCEEEEec
Confidence 4566677888888 9999999999 999988753
No 33
>PF12543 DUF3738: Protein of unknown function (DUF3738); InterPro: IPR017801 This entry describes a paralogous family of about 40 proteins first found in Solibacter usitatus (strain Ellin6076), one of the first three members of the Acidobacteria to be sequenced. The family is well-diversified, with few protein pairs showing greater than 50 % pairwise identity. A few members of the family are longer, multidomain proteins.
Probab=25.81 E-value=44 Score=26.79 Aligned_cols=23 Identities=43% Similarity=0.897 Sum_probs=18.9
Q ss_pred CCCCCcchhhhHHhhhCcccccch
Q 032128 34 DPTGPSRLLSTIAEREGMKADPVD 57 (147)
Q Consensus 34 dptgpSRLl~~iaeQeG~~~~~~e 57 (147)
++++|| |...+-||-|+++.+..
T Consensus 155 ~~~~~s-lf~AlqeQLGLKLe~~k 177 (189)
T PF12543_consen 155 DPDGPS-LFTALQEQLGLKLEPRK 177 (189)
T ss_pred CCCccc-HHHHHHHhhCceecccc
Confidence 566677 99999999999998753
No 34
>PF02119 FlgI: Flagellar P-ring protein; InterPro: IPR001782 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. The sequences of the FlgH, FlgI and FliF gene products have been determined []. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences [, ]. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins, and FlgI is thought to have even more beta-structure content []. Several aspects of the DNA sequence of these genes and their surrounds suggest complex regulation of the flagellar gene system.; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009428 bacterial-type flagellum basal body, distal rod, P ring, 0030288 outer membrane-bounded periplasmic space
Probab=24.74 E-value=91 Score=27.93 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=34.3
Q ss_pred CcchhhhHHhhhCcccccchhhHHHHHHhh-CCceeeeEEe
Q 032128 38 PSRLLSTIAEREGMKADPVDLTEFVDFVKL-NKLQTDCFFI 77 (147)
Q Consensus 38 pSRLl~~iaeQeG~~~~~~e~~~fiDfi~~-nnL~tE~f~I 77 (147)
..+|-.++..=.-+.+.|.|++.++..+|+ |.||-|+..|
T Consensus 302 ~~tl~~lV~aLN~lg~~p~DlI~Ilqaik~aGAL~AeL~i~ 342 (342)
T PF02119_consen 302 GATLQDLVRALNALGATPRDLIAILQAIKAAGALHAELEII 342 (342)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCceEEEeC
Confidence 455888888878899999999999999986 8999998764
No 35
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=24.25 E-value=1.7e+02 Score=21.42 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=24.1
Q ss_pred hhhCcccccchhhHHHHHHhhCCceeeeEEecCceE
Q 032128 47 EREGMKADPVDLTEFVDFVKLNKLQTDCFFIGKNQY 82 (147)
Q Consensus 47 eQeG~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqY 82 (147)
|+.|.....++...|...+.++.+ .|.-.+.+|.|
T Consensus 42 e~~g~~~~~v~~~~~~~~~~~~~f-~e~~~~~~~~y 76 (137)
T cd00071 42 EVDGVDYHFVSKEEFERLIENGEF-LEWAEFHGNYY 76 (137)
T ss_pred ccCCceeEEeCHHHHHHHHHcCCe-EEEEEEcCEEe
Confidence 567888888888888888887775 44444444433
No 36
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=24.24 E-value=68 Score=24.25 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=19.8
Q ss_pred hhhhHHhhhCcccccchhhHHHHHHhh
Q 032128 41 LLSTIAEREGMKADPVDLTEFVDFVKL 67 (147)
Q Consensus 41 Ll~~iaeQeG~~~~~~e~~~fiDfi~~ 67 (147)
+-..||++|||.+++ +--++|+|+|+
T Consensus 26 vA~~lA~~egieLT~-~Hw~vI~~lR~ 51 (108)
T TIGR03342 26 VAEALAEEEGIELTE-AHWEVINFLRD 51 (108)
T ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHH
Confidence 667899999998765 34557888886
No 37
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=23.55 E-value=28 Score=23.75 Aligned_cols=13 Identities=54% Similarity=1.357 Sum_probs=9.4
Q ss_pred HHHHhhhccCCCChhhh
Q 032128 10 WEKWASTSVGSSGEPLK 26 (147)
Q Consensus 10 wEKwa~~~VG~sgkplk 26 (147)
|+||+| +-|+||.
T Consensus 20 Wd~wvS----f~GrPlt 32 (49)
T PF06543_consen 20 WDKWVS----FDGRPLT 32 (49)
T ss_pred hHHhee----eCCeeCC
Confidence 999975 3478874
No 38
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=23.24 E-value=43 Score=31.56 Aligned_cols=39 Identities=26% Similarity=0.580 Sum_probs=31.2
Q ss_pred ChhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhhCCcee
Q 032128 22 GEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKLNKLQT 72 (147)
Q Consensus 22 gkplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~nnL~t 72 (147)
|+.+|+-+++| |+.|- |.-+.|.+|..+++|+++-|+|.
T Consensus 224 ~~kVkGvlitN--PsNPL----------G~~~~~e~L~~ll~Fa~~kniHv 262 (471)
T KOG0256|consen 224 GLKVKGVLITN--PSNPL----------GTTLSPEELISLLNFASRKNIHV 262 (471)
T ss_pred CCceeEEEEeC--CCCCC----------CCccCHHHHHHHHHHHhhcceEE
Confidence 35666666655 65563 88899999999999999999996
No 39
>PF04828 GFA: Glutathione-dependent formaldehyde-activating enzyme; InterPro: IPR006913 The GFA family consists mainly of glutathione-dependent formaldehyde-activating enzymes, but also includes centromere protein V and a fission yeast protein described as uncharacterised lyase. Glutathione-dependent formaldehyde-activating enzyme catalyse the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. All known members of this family contain 5 strongly conserved cysteine residues.; GO: 0016846 carbon-sulfur lyase activity, 0008152 metabolic process; PDB: 3FAC_B 1XA8_A 1X6M_B.
Probab=23.23 E-value=63 Score=20.97 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=17.6
Q ss_pred eecceeeeecccccc---cCCcceEEEEehh
Q 032128 87 IHENWFCARCLNTVK---AAGEGAIVMQTKA 114 (147)
Q Consensus 87 Ihe~wf~ARcvNt~~---p~GeG~IVmq~~a 114 (147)
--+++||.+|-...- +.+.+.+.+.++.
T Consensus 45 ~~~r~FC~~CGs~l~~~~~~~~~~~~V~~g~ 75 (92)
T PF04828_consen 45 GVERYFCPTCGSPLFSEDERDPDLVGVNAGT 75 (92)
T ss_dssp SCEEEEETTT--EEEEEESSTTTEEEEEGGG
T ss_pred cCcCcccCCCCCeeecccCCCCCEEEEEeEe
Confidence 348899999966543 5666676666543
No 40
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=23.13 E-value=2.1e+02 Score=21.47 Aligned_cols=62 Identities=31% Similarity=0.327 Sum_probs=40.8
Q ss_pred ccCCC--ChhhhhhhhhccCC----------CCCcchhhhHHhhhCcccccchhhHHHHHHhhCCceeeeEEecCceEE
Q 032128 17 SVGSS--GEPLKAALLINYDP----------TGPSRLLSTIAEREGMKADPVDLTEFVDFVKLNKLQTDCFFIGKNQYI 83 (147)
Q Consensus 17 ~VG~s--gkplkaA~Lin~dp----------tgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqYl 83 (147)
.+|.| ||---+-.|+...| |+|.|- -|..|....++.-..|-..+++|.+ .|+-..+++.|=
T Consensus 7 l~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~----~E~~g~~y~fvs~~~f~~~~~~~~f-ie~~~~~g~~YG 80 (183)
T PF00625_consen 7 LVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRP----GEVDGVDYHFVSKEEFERMIKAGEF-IEYGEYDGNYYG 80 (183)
T ss_dssp EESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGT----TS-TTTSEEE--HHHHHHHHHTTHE-EEEEEETTEEEE
T ss_pred EECCCCCCHHHHHHHHHHhcccccccceeecccCCcc----cccCCcceEEEeechhhhhhccccE-EEEeeecchhhh
Confidence 46776 55555556666665 555552 3888999999999999888888766 466666777774
No 41
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=23.08 E-value=1.7e+02 Score=22.15 Aligned_cols=61 Identities=31% Similarity=0.273 Sum_probs=41.0
Q ss_pred ccCCC--ChhhhhhhhhccCC----------CCCcchhhhHHhhhCcccccchhhHHHHHHhhCCceeeeEEecCceE
Q 032128 17 SVGSS--GEPLKAALLINYDP----------TGPSRLLSTIAEREGMKADPVDLTEFVDFVKLNKLQTDCFFIGKNQY 82 (147)
Q Consensus 17 ~VG~s--gkplkaA~Lin~dp----------tgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqY 82 (147)
.+|.| ||=--+..|+..+| |+|.| --|..|....++.-..|-+.+++|.+ .|.-...+|.|
T Consensus 7 l~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r----~~e~~g~dy~fvs~~ef~~~i~~g~f-ve~~~~~g~~Y 79 (184)
T smart00072 7 LSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPR----PGEVNGVDYHFVSREEFEDDIKSGLF-LEWGEYSGNYY 79 (184)
T ss_pred EECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCC----CCCcCCceEEECCHHHHHHHHHcCCe-EEEEEEcCcCc
Confidence 46776 56555666666665 33333 24667889999999999999999876 33444445555
No 42
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=22.35 E-value=1.6e+02 Score=23.37 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=13.8
Q ss_pred hHHHHHHhhCCceeeeEEecC
Q 032128 59 TEFVDFVKLNKLQTDCFFIGK 79 (147)
Q Consensus 59 ~~fiDfi~~nnL~tE~f~Ig~ 79 (147)
.+++|..++.+.+-=||.+|.
T Consensus 53 ~~lL~~L~~~~vkATFFv~G~ 73 (224)
T TIGR02884 53 PKILDVLKEKKVPAAFFVTGH 73 (224)
T ss_pred HHHHHHHHHcCCCeEEEeech
Confidence 356677777777766666664
No 43
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=21.08 E-value=22 Score=31.75 Aligned_cols=16 Identities=25% Similarity=0.760 Sum_probs=12.9
Q ss_pred EEEeeecceeeeeccc
Q 032128 83 IVTTIHENWFCARCLN 98 (147)
Q Consensus 83 lVTsIhe~wf~ARcvN 98 (147)
.|--.||||||-|=+|
T Consensus 106 fICnl~eHWF~iRKfg 121 (315)
T KOG2935|consen 106 FICNLKEHWFTIRKFG 121 (315)
T ss_pred hhhcchhhhhhHhhhc
Confidence 3567899999999765
Done!