Query 032128
Match_columns 147
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 16:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1acf_A Profilin I; protein bin 99.8 1.8E-19 6.1E-24 132.0 4.3 121 10-146 2-124 (125)
2 3d9y_A Profilin; yeast, actin- 99.5 6E-15 2E-19 108.2 4.8 123 9-146 2-126 (127)
3 3nec_A Profilin, inflammatory 99.3 1.3E-12 4.3E-17 101.5 4.1 126 10-146 7-165 (166)
4 1ypr_A Profilin; actin-binding 99.3 2.7E-12 9.3E-17 94.2 3.8 121 10-145 2-123 (125)
5 3nul_A Profilin I; cytoskeleto 98.8 7.2E-09 2.5E-13 76.4 7.0 123 10-146 2-129 (130)
6 2v8f_A Profilin-2, profilin II 98.6 1.2E-08 4.2E-13 76.6 2.8 123 10-145 4-138 (140)
7 2pbd_P Profilin-1, profilin I; 98.6 2.2E-08 7.5E-13 74.8 3.1 123 10-145 3-137 (139)
8 2jkg_A Profilin; proline-rich 98.3 8.4E-07 2.9E-11 70.8 5.1 122 10-144 7-168 (179)
9 4ayb_F DNA-directed RNA polyme 72.4 1.8 6E-05 31.2 2.0 46 22-67 64-109 (113)
10 3tvt_A Disks large 1 tumor sup 70.2 0.73 2.5E-05 37.5 -0.5 54 29-109 10-64 (292)
11 3ewt_E Tumor necrosis factor r 63.7 3.8 0.00013 23.5 1.8 25 39-70 1-25 (25)
12 1bax_A M-PMV MA, M-PMV matrix 49.5 8.3 0.00028 28.0 2.0 27 41-67 14-40 (94)
13 2lpy_A Matrix protein P10; GAG 48.3 9.2 0.00032 28.8 2.1 27 41-67 13-39 (124)
14 3o65_A Putative ataxin-3-like 43.5 20 0.00069 28.4 3.5 49 41-98 80-128 (191)
15 1ex7_A Guanylate kinase; subst 35.3 55 0.0019 24.5 4.7 43 36-83 37-79 (186)
16 2nsa_A Trigger factor, TF; cha 34.5 22 0.00075 25.4 2.3 27 41-67 97-123 (170)
17 1uuz_A IVY, inhibitor of verte 33.8 17 0.00057 27.7 1.6 44 47-90 11-61 (137)
18 2l5b_A Activator of apoptosis 27.5 39 0.0013 20.4 2.1 14 134-147 18-31 (32)
19 2c35_A Human RPB4, DNA-directe 26.2 29 0.00099 26.0 1.8 44 23-67 103-146 (152)
20 1f62_A Transcription factor WS 26.1 14 0.00049 22.1 0.0 11 89-99 40-50 (51)
21 1go3_F DNA-directed RNA polyme 24.8 28 0.00097 24.7 1.4 41 23-67 65-105 (107)
22 2ak5_A RHO guanine nucleotide 23.8 31 0.001 20.7 1.2 19 20-38 2-20 (64)
23 2dl8_A SLIT-ROBO RHO GTPase-ac 23.7 46 0.0016 20.6 2.1 18 22-39 7-24 (72)
24 3te8_A Sensor histidine kinase 23.4 22 0.00076 25.2 0.6 32 25-56 29-60 (127)
25 3lr0_A Sensor protein; niaid, 23.1 21 0.0007 26.4 0.4 32 25-56 45-76 (143)
26 2fly_A Proadrenomedullin N-20 22.5 34 0.0012 19.9 1.2 11 6-16 9-19 (26)
27 2puy_A PHD finger protein 21A; 21.5 8.9 0.0003 24.0 -1.6 17 89-105 42-58 (60)
28 3tq8_A Dihydrofolate reductase 21.5 1.5E+02 0.005 22.5 4.9 38 49-90 72-120 (178)
29 2yt5_A Metal-response element- 20.4 16 0.00055 22.8 -0.6 14 88-101 50-63 (66)
No 1
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=99.77 E-value=1.8e-19 Score=131.98 Aligned_cols=121 Identities=21% Similarity=0.387 Sum_probs=105.3
Q ss_pred HHHHhhh-ccCCCChhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhh-CCceeeeEEecCceEEEEee
Q 032128 10 WEKWAST-SVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKL-NKLQTDCFFIGKNQYIVTTI 87 (147)
Q Consensus 10 wEKwa~~-~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~-nnL~tE~f~Ig~nqYlVTsI 87 (147)
|+.|+.. ++| +|++-+ |++++.| | ++.|.++|.+++|.|+++|+++++. ++++.+-|++++.||+|++.
T Consensus 2 Wq~yvd~~L~~-~g~~~~-aAIig~d--G-----svwA~s~~f~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~i~~ 72 (125)
T 1acf_A 2 WQTYVDTNLVG-TGAVTQ-AAILGLD--G-----NTWATSAGFAVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRA 72 (125)
T ss_dssp HHHHHHTTTGG-GTSCSE-EEEEETT--S-----CEEEECTTCCCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEE
T ss_pred hHHHHHhhhhh-CCCcce-EEEEcCC--C-----CEEEecCCCccCHHHHHHHHHHhcCcchhhcCCeEECCEEEEEEEe
Confidence 9999999 666 675554 5588885 3 6788899999999999999999984 58999999999999999999
Q ss_pred ecceeeeecccccccCCcceEEEEehhhhhhhhccCCcchhhHHHHHHHHHHHHhhhhc
Q 032128 88 HENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSIGPASRAMASADQLAWQLSRRN 146 (147)
Q Consensus 88 he~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gSi~~as~am~~~dqf~~ql~r~~ 146 (147)
+|+..++| ..++|++|++|..+|+|++|+.++- +.+++.+|++|++.|.+..
T Consensus 73 d~~~i~~k------k~~~Gv~i~kT~~aivI~~y~~~~~-~g~~~~~ve~ladyL~~~g 124 (125)
T 1acf_A 73 DDRSIYGK------KGSSGVITVKTSKAILVGVYNEKIQ-PGTAANVVEKLADYLIGQG 124 (125)
T ss_dssp SSSEEEEE------ETTEEEEEEECSSEEEEEEECTTSC-HHHHHHHHHHHHHHHHTTT
T ss_pred cCcEEEee------cCCCeEEEEECCCEEEEEEcCCCCC-HHHHHHHHHHHHHHHHHcC
Confidence 99876654 4688999999999999999999977 7799999999999998754
No 2
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=99.53 E-value=6e-15 Score=108.19 Aligned_cols=123 Identities=18% Similarity=0.296 Sum_probs=105.5
Q ss_pred HHHHHhh-hccCCCChhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHh-hCCceeeeEEecCceEEEEe
Q 032128 9 TWEKWAS-TSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVK-LNKLQTDCFFIGKNQYIVTT 86 (147)
Q Consensus 9 ~wEKwa~-~~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~-~nnL~tE~f~Ig~nqYlVTs 86 (147)
.|+-|+. .++|+ .-+.+|+++..| |+| +-|..+|..++|.|++.|++.++ +++++.+-+++++.||.|+.
T Consensus 2 SWq~Yvd~~L~~~--~~~~~aAI~g~d--G~s----vwA~s~gf~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~vir 73 (127)
T 3d9y_A 2 SWQAYVDTSLLGT--GKIDRAAIVSRA--GDS----VWAASAGFNLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIR 73 (127)
T ss_dssp CHHHHHHTTTGGG--SSCCEEEEEETT--SSC----EEEECTTCCCCHHHHHHHHHHHHSTTHHHHHCEEETTEEEEEEE
T ss_pred CHHHHHHHhhccc--CceeeEEEEeCC--CCe----EEEeCCCCccCHHHHHHHHHHhcCcchhhcCCEEEcCeEEEEEE
Confidence 3999999 68873 457777888877 343 46788899999999999999988 57788999999999999999
Q ss_pred eecceeeeecccccccCCcceEEEEehhhhhhhhccCCcchhhHHHHHHHHHHHHhhhhc
Q 032128 87 IHENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSIGPASRAMASADQLAWQLSRRN 146 (147)
Q Consensus 87 Ihe~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gSi~~as~am~~~dqf~~ql~r~~ 146 (147)
.+|+..++|. .++|++|++|...|+|++|+.++ .+.++..+|+++++.|....
T Consensus 74 ~d~~~i~~kk------g~~Gv~i~kT~~aivi~~y~e~~-~~g~~~~~ve~ladYL~~~G 126 (127)
T 3d9y_A 74 AEGRSIYGKL------QKEGIICVATKLCILVSHYPETT-LPGEAAKITEALADYLVGVG 126 (127)
T ss_dssp ECSSEEEEEE------TTEEEEEEECSSEEEEEEECTTS-CHHHHHHHHHHHHHHHHHHT
T ss_pred eCcceEEEEc------CCceEEEEECCCEEEEEEcCCCC-CHHHHHHHHHHHHHHHHHcC
Confidence 9999888764 57899999999999999999998 57789999999999987653
No 3
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=99.29 E-value=1.3e-12 Score=101.52 Aligned_cols=126 Identities=19% Similarity=0.199 Sum_probs=105.3
Q ss_pred HHHHhhh-ccCCCChhhhhhhhhc-cCCCCCcchhhhHHhhhCc-------------------------ccccchhhHHH
Q 032128 10 WEKWAST-SVGSSGEPLKAALLIN-YDPTGPSRLLSTIAEREGM-------------------------KADPVDLTEFV 62 (147)
Q Consensus 10 wEKwa~~-~VG~sgkplkaA~Lin-~dptgpSRLl~~iaeQeG~-------------------------~~~~~e~~~fi 62 (147)
|+-|+.. ++|. .-+.+|++++ .|- | +-|...|. .++|.|+..|+
T Consensus 7 Wq~YVd~~L~~~--g~v~~AAI~g~~DG---~----vWA~s~~~~~~w~~~~~~~y~~~v~~~~g~~~~~~~~~E~~~i~ 77 (166)
T 3nec_A 7 WDPVVKEWLVDT--GYCCAGGIANAEDG---V----VFAAAADDDDGWSKLYKDDHEEDTIGEDGNACGKVSINEASTIK 77 (166)
T ss_dssp CHHHHHHHHTTT--SSCSEEEEEETTTC---C----EEEEEETTSCHHHHHCCCCEEEEEECTTSCEEEEEEECHHHHHH
T ss_pred HHHHHHHHhhcc--CceeEEEEEecCCC---C----EEeecCCCCcccccccccccccccccccccccccCCHHHHHHHH
Confidence 8999985 7763 5678888888 564 1 23333333 56899999999
Q ss_pred HHHhhCCceeeeEEecCceEEEEeeecceeee----ecccccccCCcceEEEEehh-hhhhhhccCCc-chhhHHHHHHH
Q 032128 63 DFVKLNKLQTDCFFIGKNQYIVTTIHENWFCA----RCLNTVKAAGEGAIVMQTKA-FLLVALYDGSI-GPASRAMASAD 136 (147)
Q Consensus 63 Dfi~~nnL~tE~f~Ig~nqYlVTsIhe~wf~A----RcvNt~~p~GeG~IVmq~~a-yiLValy~gSi-~~as~am~~~d 136 (147)
+.++.+ ++.+=++||+.||.++...|.+.|+ ||+-..++.| |++|+.|.. +|+|++|+..+ ..+.++..+|+
T Consensus 78 ~~f~~~-~~~~Gl~lgG~KY~~ir~d~~~~~~~~~~~~i~~kK~~~-Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve 155 (166)
T 3nec_A 78 AAVDDG-SAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSKG-GAHLIKTPNGSIVIALYDEEKEQDKGNSRTSAL 155 (166)
T ss_dssp HHHHHS-CCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTE-EEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHH
T ss_pred HHhhcC-CccCCeEEeCeEEEEEEecCCccccccceeEEEeccCCc-eEEEEEeCCCEEEEEEccCCCccCHHHHHHHHH
Confidence 999996 6899999999999999999999887 8888788765 999999999 99999999998 67888999999
Q ss_pred HHHHHhhhhc
Q 032128 137 QLAWQLSRRN 146 (147)
Q Consensus 137 qf~~ql~r~~ 146 (147)
+|++.|.+..
T Consensus 156 ~ladYL~~~G 165 (166)
T 3nec_A 156 AFAEYLHQSG 165 (166)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999997653
No 4
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=99.25 E-value=2.7e-12 Score=94.20 Aligned_cols=121 Identities=20% Similarity=0.354 Sum_probs=101.4
Q ss_pred HHHHhhhccCCCChhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhhC-CceeeeEEecCceEEEEeee
Q 032128 10 WEKWASTSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKLN-KLQTDCFFIGKNQYIVTTIH 88 (147)
Q Consensus 10 wEKwa~~~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~n-nL~tE~f~Ig~nqYlVTsIh 88 (147)
|+.|+..++| +| -+++|+++..|. || +-|..+|..++|.|++.+++.++.. .++.+-+++++.||.+....
T Consensus 2 Wq~yvd~L~~-~g-~~~~aAI~g~DG--~s----vwA~s~~f~~~~~E~~~i~~~f~~~~~~~~~Gl~l~G~KY~~i~~d 73 (125)
T 1ypr_A 2 WQAYTDNLIG-TG-KVDKAVIYSRAG--DA----VWATSGGLSLQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRAD 73 (125)
T ss_dssp HHHHHHHHHH-TS-SCSEEEEEETTS--CC----EEEEESCCCCCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEEC
T ss_pred hHHHHHHHhc-CC-CccEEEEEeCCC--Cc----EEEECCCCccCHHHHHHHHHhccCcchhccCCeEECCEEEEEEecC
Confidence 9999999999 56 788888899854 54 4556689999999999999999753 67888999999999999999
Q ss_pred cceeeeecccccccCCcceEEEEehhhhhhhhccCCcchhhHHHHHHHHHHHHhhhh
Q 032128 89 ENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSIGPASRAMASADQLAWQLSRR 145 (147)
Q Consensus 89 e~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gSi~~as~am~~~dqf~~ql~r~ 145 (147)
++..++|+ ..+|++|+.|...|+|++|+..+-+ .++-.+|+++++.|...
T Consensus 74 ~~~i~~kk------~~~Gi~i~kT~~aivI~~y~e~~~~-g~~~~~ve~ladYL~~~ 123 (125)
T 1ypr_A 74 DRSIYGRH------DAEGVVCVRTKQTVIIAHYPPTVQA-GEATKIVEQLADYLIGV 123 (125)
T ss_dssp SSEEEEEE------TTEEEEEEECSSEEEEEEECTTSCH-HHHHHHHHHHHHHHHHT
T ss_pred CcEEEEec------CCceEEEEECCCEEEEEEcCCCCCH-HHHHHHHHHHHHHHHHc
Confidence 99888764 4578999999999999999999665 46667788888887654
No 5
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=98.83 E-value=7.2e-09 Score=76.40 Aligned_cols=123 Identities=17% Similarity=0.274 Sum_probs=99.0
Q ss_pred HHHHhh-hccCC-CChhhhhhhhhccCCCCCcchhhhHHhhhCc-ccccchhhHHHHHHhh-CCceeeeEEecCceEEEE
Q 032128 10 WEKWAS-TSVGS-SGEPLKAALLINYDPTGPSRLLSTIAEREGM-KADPVDLTEFVDFVKL-NKLQTDCFFIGKNQYIVT 85 (147)
Q Consensus 10 wEKwa~-~~VG~-sgkplkaA~Lin~dptgpSRLl~~iaeQeG~-~~~~~e~~~fiDfi~~-nnL~tE~f~Ig~nqYlVT 85 (147)
|+-|+. .++|. +|.-+..|+++..|- + +-|.-.|. .++|.|+..|++.++. +.+..+=+.+++.||.|.
T Consensus 2 Wq~YVd~~L~~~~~g~~~~~aAIig~dG---s----vWA~s~gf~~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~~i 74 (130)
T 3nul_A 2 WQSYVDDHLMCDVEGNHLTAAAILGQDG---S----VWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVI 74 (130)
T ss_dssp HHHHHHHTTSCCBTTBCCSEEEEEETTS---C----EEEECTTCCCCCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEE
T ss_pred HHHHHHhhhcccccCCcEeeEEEEeCCC---C----EEEcCCCcccCCHHHHHHHHHhccCchhhccCCEEECCeEEEEE
Confidence 999998 57763 354778888888864 2 35777898 9999999999998774 567889999999999999
Q ss_pred eee-cceeeeecccccccCCcceEEEEehhhhhhhhccCCcchhhHHHHHHHHHHHHhhhhc
Q 032128 86 TIH-ENWFCARCLNTVKAAGEGAIVMQTKAFLLVALYDGSIGPASRAMASADQLAWQLSRRN 146 (147)
Q Consensus 86 sIh-e~wf~ARcvNt~~p~GeG~IVmq~~ayiLValy~gSi~~as~am~~~dqf~~ql~r~~ 146 (147)
... ++..++|.- .+|++|+.|...|+|++|+..+-+. ++-.+++.+++.|....
T Consensus 75 r~d~~~~i~~kkg------~~Gv~i~kT~~aivig~y~e~~~~g-~~~~~ve~ladYL~~~G 129 (130)
T 3nul_A 75 QGEQGAVIRGKKG------PGGVTIKKTNQALVFGFYDEPMTGG-QCNLVVERLGDYLIESE 129 (130)
T ss_dssp EEETTTEEEEEET------TEEEEEEECSSEEEEEEECTTSCHH-HHHHHHHHHHHHHHHTT
T ss_pred EeCCCcEEEEecC------CCeEEEEECCCEEEEEEcCCCCCHH-HHHHHHHHHHHHHHHcC
Confidence 998 777665532 3589999999999999999997655 57778888888876543
No 6
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=98.63 E-value=1.2e-08 Score=76.55 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=95.8
Q ss_pred HHHHhhhccCCCChhhhhhhhhccCCCCCcchhhhHHhhhC--c-ccccchhhHHHHHHhhCCceeeeEEecCceEEEEe
Q 032128 10 WEKWASTSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREG--M-KADPVDLTEFVDFVKLNKLQTDCFFIGKNQYIVTT 86 (147)
Q Consensus 10 wEKwa~~~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG--~-~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqYlVTs 86 (147)
|+-|+..+++ +| -+.+|+++.+|-+ || +-|.-.| . .++|.|+..|+ .=....+..+=+++++.||.+..
T Consensus 4 Wq~yvd~L~~-~g-~v~~AAIig~dG~-~s----vWA~s~g~~f~~~~~~E~~~i~-~~d~~~~~~~Gl~l~G~Ky~~ir 75 (140)
T 2v8f_A 4 WQSYVDNLMC-DG-CCQEAAIVGYCDA-KY----VWAATAGGVFQSITPVEIDMIV-GKDREGFFTNGLTLGAKKCSVIR 75 (140)
T ss_dssp THHHHHHHHT-TS-CEEEEEEEECSSS-CS----EEEECTTSSGGGCCHHHHHHHH-SSCSSHHHHHCEEETTEEEEEEE
T ss_pred HHHHHHHHhc-cC-CcceEEEEecCCC-cc----EEEECCCCCcccCCHHHHHHHH-cCCccccccCCeEECCEEEEEEe
Confidence 8999999998 45 7788888998731 23 4455667 7 88999999999 42235677788999999999998
Q ss_pred e----e-cceeeeecccccccCCcc----eEEEEehhhhhhhhccCCcchhhHHHHHHHHHHHHhhhh
Q 032128 87 I----H-ENWFCARCLNTVKAAGEG----AIVMQTKAFLLVALYDGSIGPASRAMASADQLAWQLSRR 145 (147)
Q Consensus 87 I----h-e~wf~ARcvNt~~p~GeG----~IVmq~~ayiLValy~gSi~~as~am~~~dqf~~ql~r~ 145 (147)
- . ++.++.|+ +...+| ++|+.|...|+|++|+..+-+. ++-.+|+.++.-|...
T Consensus 76 ~~l~~d~~~~~di~~----kk~~~G~~~~v~i~KT~~alvI~~y~e~~~~g-~~~~~ve~ladYL~~~ 138 (140)
T 2v8f_A 76 DSLYVDGDCTMDIRT----KSQGGEPTYNVAVGRAGRVLVFVMGKEGVHGG-GLNKKAYSMAKYLRDS 138 (140)
T ss_dssp EETTSTTTCEEEEEE----CCCSSSCCCEEEEEECSSEEEEEEECTTCCHH-HHHHHHHHHHHHHHHT
T ss_pred cccccCCCceEEEEE----ecCCCCCceeEEEEEcCCEEEEEEcCCCCCHH-HHHHHHHHHHHHHHHc
Confidence 8 4 67766665 445678 9999999999999999996654 6667788888877643
No 7
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=98.58 E-value=2.2e-08 Score=74.82 Aligned_cols=123 Identities=18% Similarity=0.266 Sum_probs=96.0
Q ss_pred HHHHhhhccCCCChhhhhhhhhccCCCCCcchhhhHHhhhC--c-ccccchhhHHHHHHhhCCceeeeEEecCceEEEEe
Q 032128 10 WEKWASTSVGSSGEPLKAALLINYDPTGPSRLLSTIAEREG--M-KADPVDLTEFVDFVKLNKLQTDCFFIGKNQYIVTT 86 (147)
Q Consensus 10 wEKwa~~~VG~sgkplkaA~Lin~dptgpSRLl~~iaeQeG--~-~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqYlVTs 86 (147)
|+-|+..+++ +| -+.+|+++.+|- .|| +-|.-.| . .++|.|+..|+ .-....+...=+++++.||.+..
T Consensus 3 Wq~Yvd~L~~-~g-~~~~AAIig~dG-~~s----vWA~s~g~~f~~~~~~E~~~i~-~~d~~~~~~~Gl~lgG~Ky~~ir 74 (139)
T 2pbd_P 3 WNAYIDNLMA-DG-TCQDAAIVGYKD-SPS----VWAAVPGKTFVNITPAEVGVLV-GKDRSSFYVNGLTLGGQKCSVIR 74 (139)
T ss_dssp SHHHHHHHHT-TS-CEEEEEEEESSS-SCE----EEEECTTSSGGGCCHHHHHHHH-SSCCSTHHHHCEEETTEEEEEEE
T ss_pred hHHHHHHHhc-cC-CcceEEEEecCC-Ccc----EEEECCCCCcccCCHHHHHHHH-ccCcccccccCeEECCEEEEEEe
Confidence 8999999999 45 788888899872 124 3455677 7 88999999999 43447788888999999999998
Q ss_pred e----e-cceeeeecccccccCCcc----eEEEEehhhhhhhhccCCcchhhHHHHHHHHHHHHhhhh
Q 032128 87 I----H-ENWFCARCLNTVKAAGEG----AIVMQTKAFLLVALYDGSIGPASRAMASADQLAWQLSRR 145 (147)
Q Consensus 87 I----h-e~wf~ARcvNt~~p~GeG----~IVmq~~ayiLValy~gSi~~as~am~~~dqf~~ql~r~ 145 (147)
- . ++.+..|+ +...+| ++|+.|...|+|++|+..+-+. ++-.+|+.++.-|...
T Consensus 75 ~~~~~d~~~~id~~~----kk~~~G~~~~v~i~KT~~alvI~~y~e~~~~g-~~~~~ve~ladYL~~~ 137 (139)
T 2pbd_P 75 DSLLQDGEFSMDLRT----KSTGGAPTFNVTVTKTDKTLVLLMGKEGVHGG-LINKKCYEMASHLRRS 137 (139)
T ss_dssp EETTCTTTCEEEEEE----CCSTTCCCCEEEEEECSSEEEEEEECTTCCHH-HHHHHHHHHHHHHHHT
T ss_pred cccccCCCcEEeeee----ccCCCCCceEEEEEEcCCEEEEEEcCCCCCHH-HHHHHHHHHHHHHHHc
Confidence 8 5 66774454 345668 9999999999999999996554 5667788888877543
No 8
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=98.27 E-value=8.4e-07 Score=70.83 Aligned_cols=122 Identities=17% Similarity=0.285 Sum_probs=90.8
Q ss_pred HHHHhhh-ccCCCChhhhhhhhhcc-CCCCCcchhhhHH-h--------------hhCc--cc----------ccchhhH
Q 032128 10 WEKWAST-SVGSSGEPLKAALLINY-DPTGPSRLLSTIA-E--------------REGM--KA----------DPVDLTE 60 (147)
Q Consensus 10 wEKwa~~-~VG~sgkplkaA~Lin~-dptgpSRLl~~ia-e--------------QeG~--~~----------~~~e~~~ 60 (147)
|+-|+.. +++ +| -+.+|++++. |- + +.-.-. + .+|. .+ +|.|+..
T Consensus 7 Wq~YVd~~Ll~-tG-~v~~AaI~g~~DG---~-vwA~s~~~~e~~~~~~~w~~~~k~~f~~~v~~e~g~~~~~~~~E~~~ 80 (179)
T 2jkg_A 7 WDSYLNDRLLA-TN-QVSGAGLASEEDG---V-VYACVAQGEESDPNFDKWSLFYKEDYDIEVEDENGTKTTKTINEGQT 80 (179)
T ss_dssp HHHHHHHHTGG-GS-SCSEEEEEETTTC---C-EEEEEESSCTTSTTCCGGGGTCCCCEEEEEECTTCCEEEEEECHHHH
T ss_pred HHHHHHHhhhh-cC-CEehheeecccCC---C-EEEecCccccccccccchhhhccCCchhhhccccCccccCCHHHHHH
Confidence 9999988 888 56 6778888887 43 2 111111 0 1265 56 8999999
Q ss_pred HHHHHhhCCceeeeEEecCceEEEEeee-c--------ceeeeecccccccCCcceEEEEe-hhhhhhhhccCCc-chhh
Q 032128 61 FVDFVKLNKLQTDCFFIGKNQYIVTTIH-E--------NWFCARCLNTVKAAGEGAIVMQT-KAFLLVALYDGSI-GPAS 129 (147)
Q Consensus 61 fiDfi~~nnL~tE~f~Ig~nqYlVTsIh-e--------~wf~ARcvNt~~p~GeG~IVmq~-~ayiLValy~gSi-~~as 129 (147)
++..++. .+..+=+.||++||.+...- + ++.+ | .+.. +|++|+.| .-.|+|++||-.. ..+.
T Consensus 81 I~~~f~~-~~~~~Gv~lgG~KY~~i~~d~d~~~~~~~~~~i~--g---kKgk-gGv~ivKT~~qaiVIg~YdE~k~~~~g 153 (179)
T 2jkg_A 81 ILVVFNE-GYAPDGVWLGGTKYQFINIERDLEFEGYNFDVAT--C---AKLK-GGLHLVKVPGGNILVVLYDEEKEQDRG 153 (179)
T ss_dssp HHHHHHH-SCCTTCEEETTEEEEEEEEEEEEEETTEEEEEEE--E---EETT-EEEEEEEETTTEEEEEEEEGGGTCCHH
T ss_pred HHHHHhc-CCCCCCEEECCEEEEEEEecCCccccCcceeEEE--E---ecCC-CcEEEEEECCCeEEEEEecCCCCcChH
Confidence 9999987 89999999999999999988 4 3322 3 3343 68999999 9999999999984 4445
Q ss_pred HHHHHHHHHHHHhhh
Q 032128 130 RAMASADQLAWQLSR 144 (147)
Q Consensus 130 ~am~~~dqf~~ql~r 144 (147)
++-.+|+.|+.-|..
T Consensus 154 ~c~~~ve~LadYL~~ 168 (179)
T 2jkg_A 154 NSKIAALTFAKELAE 168 (179)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777888877754
No 9
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=72.42 E-value=1.8 Score=31.24 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=41.0
Q ss_pred ChhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhh
Q 032128 22 GEPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKL 67 (147)
Q Consensus 22 gkplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~ 67 (147)
..+-.+|.|.|--|..+.-+..++...++..+...|+++++|.|++
T Consensus 64 l~~~~~a~IanL~P~~~dElrali~s~e~~~~~deeL~~IL~~l~k 109 (113)
T 4ayb_F 64 SREDVRAVLASICPITPDEVRSILIMDSNRTYTSEDIQKIIDIIRK 109 (113)
T ss_dssp CCHHHHHHHHHHCCCSSCCCCTTTTTTCCCCCCCTHHHHHHHHC--
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999999875
No 10
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=70.25 E-value=0.73 Score=37.49 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=28.0
Q ss_pred hhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhhCCceeeeEEecCceEEEEeeecceeeeecccccc-cCCcce
Q 032128 29 LLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKLNKLQTDCFFIGKNQYIVTTIHENWFCARCLNTVK-AAGEGA 107 (147)
Q Consensus 29 ~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqYlVTsIhe~wf~ARcvNt~~-p~GeG~ 107 (147)
++++|||+..+ ++|. | |+.|+.-|+-+++| +=.++||.||-+.-.. ...-|+
T Consensus 10 a~fdY~~~~D~-~~P~---~-gL~F~~gDiL~V~~----------------------~~d~~wWqA~~v~~~~~~~~~Gl 62 (292)
T 3tvt_A 10 ALFDYDPNRDD-GLPS---R-GLPFKHGDILHVTN----------------------ASDDEWWQARRVLGDNEDEQIGI 62 (292)
T ss_dssp ECSCBCC--------------CCCBCTTCEEEEEE----------------------CCSSSEEEECCCCC--------E
T ss_pred EeccCCCCCCC-CCCC---C-cCCcCCCCEEEEee----------------------cCCCCeEEEEEeCCCCCccceeE
Confidence 47899997654 4453 3 88888887655443 3567999999874332 233466
Q ss_pred EE
Q 032128 108 IV 109 (147)
Q Consensus 108 IV 109 (147)
|=
T Consensus 63 IP 64 (292)
T 3tvt_A 63 VP 64 (292)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 11
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=63.67 E-value=3.8 Score=23.49 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=18.9
Q ss_pred cchhhhHHhhhCcccccchhhHHHHHHhhCCc.
Q 032128 39 SRLLSTIAEREGMKADPVDLTEFVDFVKLNKL. 70 (147)
Q Consensus 39 SRLl~~iaeQeG~~~~~~e~~~fiDfi~~nnL. 70 (147)
|+.+|.|||+-. +.+..+|+|+|.+
T Consensus 1 skyIp~IAe~M~-------~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 1 SKYITTIAGVMT-------LSQVKGFVRKNGVx 26 (26)
T ss_pred CCchhHHHHHHh-------HHHHHHHHHHcCC.
Confidence 567889999865 4577788888864
No 12
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=49.55 E-value=8.3 Score=27.96 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=24.2
Q ss_pred hhhhHHhhhCcccccchhhHHHHHHhh
Q 032128 41 LLSTIAEREGMKADPVDLTEFVDFVKL 67 (147)
Q Consensus 41 Ll~~iaeQeG~~~~~~e~~~fiDfi~~ 67 (147)
.+-.++.+.|++++..+++-|.+||.+
T Consensus 14 ~lk~lLk~RgIkVkk~~L~~Ff~fi~~ 40 (94)
T 1bax_A 14 QLKQALKTRGVKVKYADLLKFFDFVKD 40 (94)
T ss_pred HHHHHHHHcCeeecHHHHHHHHHHHHH
Confidence 456778999999999999999999976
No 13
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=48.31 E-value=9.2 Score=28.78 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=24.1
Q ss_pred hhhhHHhhhCcccccchhhHHHHHHhh
Q 032128 41 LLSTIAEREGMKADPVDLTEFVDFVKL 67 (147)
Q Consensus 41 Ll~~iaeQeG~~~~~~e~~~fiDfi~~ 67 (147)
.+..++.|.|++++..+|+-|.+||.+
T Consensus 13 ~Lk~~LK~rGvkV~~k~L~~Ff~~i~~ 39 (124)
T 2lpy_A 13 QLKQALKTRGVKVKYADLLKFFDFVKD 39 (124)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeeecHHHHHHHHHHHHH
Confidence 466788999999999999999999974
No 14
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=43.52 E-value=20 Score=28.44 Aligned_cols=49 Identities=14% Similarity=0.330 Sum_probs=30.7
Q ss_pred hhhhHHhhhCcccccchhhHHHHHHhhCCceeeeEEecCceEEEEeeecceeeeeccc
Q 032128 41 LLSTIAEREGMKADPVDLTEFVDFVKLNKLQTDCFFIGKNQYIVTTIHENWFCARCLN 98 (147)
Q Consensus 41 Ll~~iaeQeG~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqYlVTsIhe~wf~ARcvN 98 (147)
.+..-+++.|+++.+.|-+...+. +- +...|. -|| --.++||||-|-++
T Consensus 80 Vl~~AL~~~glelv~~d~~~~~~~-~~-~p~~~~------~FI-~N~~~HWfaiRkig 128 (191)
T 3o65_A 80 VISNALKFWGLEIIHFNNPEYQKL-GI-DPINER------SFI-CNYKQHWFTIRKFG 128 (191)
T ss_dssp HHHHHHHTTTCEEEETTCHHHHHT-CC-CGGGCC------EEE-EEESSCEEEEEEET
T ss_pred HHHHHHHHcCCeEEECCCchhhhh-cC-Chhhhh------hhh-hccccceeeEEecC
Confidence 456667889999988887665432 11 112221 122 23599999999875
No 15
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=35.30 E-value=55 Score=24.48 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=33.7
Q ss_pred CCCcchhhhHHhhhCcccccchhhHHHHHHhhCCceeeeEEecCceEE
Q 032128 36 TGPSRLLSTIAEREGMKADPVDLTEFVDFVKLNKLQTDCFFIGKNQYI 83 (147)
Q Consensus 36 tgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~nqYl 83 (147)
|+|+|- -|..|....++.-..|-..+++|.+ .|.-...+|.|=
T Consensus 37 TR~pR~----gE~~G~dY~Fvs~~eF~~~i~~g~f-lE~~~~~g~~YG 79 (186)
T 1ex7_A 37 TRTPRA----GEVNGKDYNFVSVDEFKSMIKNNEF-IEWAQFSGNYYG 79 (186)
T ss_dssp CSCCCT----TCCBTTTBEECCHHHHHHHHHTTCE-EEEEEETTEEEE
T ss_pred ccCCCC----CCcCCceeEeecHHHHHHHHHcCCE-EEEEEEcCceee
Confidence 455553 4788999999999999999999987 677666666663
No 16
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=34.48 E-value=22 Score=25.43 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=24.1
Q ss_pred hhhhHHhhhCcccccchhhHHHHHHhh
Q 032128 41 LLSTIAEREGMKADPVDLTEFVDFVKL 67 (147)
Q Consensus 41 Ll~~iaeQeG~~~~~~e~~~fiDfi~~ 67 (147)
++.-||+++||.+.+.|+...+..+.+
T Consensus 97 il~~ia~~e~I~vsdeev~~~i~~~A~ 123 (170)
T 2nsa_A 97 VIEVLAQEKGISVNDEELEKEAEELAP 123 (170)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987764
No 17
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=33.84 E-value=17 Score=27.71 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=30.5
Q ss_pred hhhCcccccchhh----HHHHHHhhCC---ceeeeEEecCceEEEEeeecc
Q 032128 47 EREGMKADPVDLT----EFVDFVKLNK---LQTDCFFIGKNQYIVTTIHEN 90 (147)
Q Consensus 47 eQeG~~~~~~e~~----~fiDfi~~nn---L~tE~f~Ig~nqYlVTsIhe~ 90 (147)
.|-+.+-...+|. .+=+-|++++ =+.|.+.+++.+|+|.++=|-
T Consensus 11 ~~p~yr~aw~~mvk~~~~LP~WV~~~~GtssP~~~V~~~G~~Ylvg~~Ckp 61 (137)
T 1uuz_A 11 GQPGYKATWHAMFKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKP 61 (137)
T ss_dssp TSHHHHHHHHHHTSSCCSCCHHHHTTCSCBCCCEEEEETTEEEEEEEEECT
T ss_pred hChHHHHHHHHHHhccCCCcHHHHhCCCCCCCCeeEEECCEEEEEEcccCC
Confidence 5555444444443 4446777775 578999999999999998443
No 18
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=27.46 E-value=39 Score=20.37 Aligned_cols=14 Identities=57% Similarity=0.831 Sum_probs=9.8
Q ss_pred HHHHHHHHhhhhcC
Q 032128 134 SADQLAWQLSRRNL 147 (147)
Q Consensus 134 ~~dqf~~ql~r~~~ 147 (147)
++.--+|-|+|||+
T Consensus 18 vaalaawll~rrnl 31 (32)
T 2l5b_A 18 VAALAAWLLGRRNL 31 (32)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhcccc
Confidence 33445788999985
No 19
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=26.21 E-value=29 Score=25.97 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=37.7
Q ss_pred hhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhh
Q 032128 23 EPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKL 67 (147)
Q Consensus 23 kplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~ 67 (147)
.+..+|.|.|--|..+--+..+|.+-++ ++...++.+++|-|.+
T Consensus 103 ~~~E~a~L~NL~P~t~dEar~lipsl~~-r~sdEeLe~ILd~l~k 146 (152)
T 2c35_A 103 HKFELACLANLCPETAEESKALIPSLEG-RFEDEELQQILDDIQT 146 (152)
T ss_dssp CHHHHHHHHHHCCSSHHHHHHHCGGGTT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHhccCCCCCHHHHHHHHHhhcc-CCCHHHHHHHHHHHHH
Confidence 5667899999999999888888877765 6889999999999986
No 20
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.08 E-value=14 Score=22.12 Aligned_cols=11 Identities=27% Similarity=0.984 Sum_probs=9.2
Q ss_pred cceeeeecccc
Q 032128 89 ENWFCARCLNT 99 (147)
Q Consensus 89 e~wf~ARcvNt 99 (147)
..|||.+|.+.
T Consensus 40 g~W~C~~C~~~ 50 (51)
T 1f62_A 40 GEWQCPACQPA 50 (51)
T ss_dssp SCCSCTTTSCC
T ss_pred CcEECcCcccc
Confidence 48999999875
No 21
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=24.84 E-value=28 Score=24.65 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=36.9
Q ss_pred hhhhhhhhhccCCCCCcchhhhHHhhhCcccccchhhHHHHHHhh
Q 032128 23 EPLKAALLINYDPTGPSRLLSTIAEREGMKADPVDLTEFVDFVKL 67 (147)
Q Consensus 23 kplkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~e~~~fiDfi~~ 67 (147)
++..+|.|.|-=|..+.-+..++...++ +.|+++++|-|++
T Consensus 65 ~e~~a~~I~nl~P~t~dElraii~~~~~----~eel~~ILd~l~k 105 (107)
T 1go3_F 65 DEKTAVKIADILPEDLDDLRAIYYKREL----PENAEEILEIVRK 105 (107)
T ss_dssp CHHHHHHHHHHCCCSHHHHHHHSTTSCC----CTTHHHHHHHHTT
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHhcccC----cHHHHHHHHHHHH
Confidence 6778999999999999999999988875 9999999999875
No 22
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=23.78 E-value=31 Score=20.74 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=11.0
Q ss_pred CCChhhhhhhhhccCCCCC
Q 032128 20 SSGEPLKAALLINYDPTGP 38 (147)
Q Consensus 20 ~sgkplkaA~Lin~dptgp 38 (147)
++..+.++-+|.+|+|..+
T Consensus 2 s~~~~~~~~al~dy~~~~~ 20 (64)
T 2ak5_A 2 SANSQLVVRAKFNFQQTNE 20 (64)
T ss_dssp --CCCCEEEESSCBCCCST
T ss_pred CCCCCEEEEEccccCCcCc
Confidence 3445556667778877544
No 23
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.69 E-value=46 Score=20.61 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=13.2
Q ss_pred ChhhhhhhhhccCCCCCc
Q 032128 22 GEPLKAALLINYDPTGPS 39 (147)
Q Consensus 22 gkplkaA~Lin~dptgpS 39 (147)
+.+.++-+|.+|.+..+.
T Consensus 7 ~~~~~~~al~dy~~~~~~ 24 (72)
T 2dl8_A 7 GEPIEAIAKFDYVGRTAR 24 (72)
T ss_dssp CSCEEEEESSCBCCSSSS
T ss_pred CCCEEEEECccCCcCCCC
Confidence 467778888888886544
No 24
>3te8_A Sensor histidine kinase RISS; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia pseudomallei} PDB: 3lr4_A
Probab=23.36 E-value=22 Score=25.22 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=25.0
Q ss_pred hhhhhhhccCCCCCcchhhhHHhhhCcccccc
Q 032128 25 LKAALLINYDPTGPSRLLSTIAEREGMKADPV 56 (147)
Q Consensus 25 lkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~ 56 (147)
+..+.|+.-||..-.+|+..++.|+|+.+.+.
T Consensus 29 lt~~al~~~~~~~R~~l~~~l~~~~Gi~i~~~ 60 (127)
T 3te8_A 29 LTRTALLYSDPDLRRALLQDLESNEGVRVYPR 60 (127)
T ss_dssp HHHHHHHTBCGGGHHHHHHHHHHHHCCEEEEC
T ss_pred hhhhhHhhCCHHHHHHHHHHhcccCCcEEcCC
Confidence 55666788888656668888899999998874
No 25
>3lr0_A Sensor protein; niaid, seattle structural genomics center for infectious DIS ssgcid, PH, RISS, iodide phased, burkholder melioidosis; 1.90A {Burkholderia pseudomallei} PDB: 3lr3_A 3lr5_A
Probab=23.12 E-value=21 Score=26.37 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=25.0
Q ss_pred hhhhhhhccCCCCCcchhhhHHhhhCcccccc
Q 032128 25 LKAALLINYDPTGPSRLLSTIAEREGMKADPV 56 (147)
Q Consensus 25 lkaA~Lin~dptgpSRLl~~iaeQeG~~~~~~ 56 (147)
+..+.|+.-||..-.+|+..++.|+|+.+.|.
T Consensus 45 Lt~~al~~~~~~~R~~ll~~L~~~~Gi~i~~~ 76 (143)
T 3lr0_A 45 LTRTALLYSDPDLRRALLQDLESNEGVRVYPR 76 (143)
T ss_dssp HHHHHHHHCCGGGHHHHHHHHHHHHCCEEEEC
T ss_pred hhhhhHhhCCHHHHHHHHHHhhhcCCcEEcCC
Confidence 55666777888655668888999999999874
No 26
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=22.47 E-value=34 Score=19.87 Aligned_cols=11 Identities=45% Similarity=1.159 Sum_probs=8.9
Q ss_pred HHHHHHHHhhh
Q 032128 6 VHKTWEKWAST 16 (147)
Q Consensus 6 ~~r~wEKwa~~ 16 (147)
.+|+|.||+..
T Consensus 9 frKKwn~w~ls 19 (26)
T 2fly_A 9 FRKKWNKWALS 19 (26)
T ss_pred HHHHHHHHHHh
Confidence 57999999853
No 27
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=21.54 E-value=8.9 Score=24.03 Aligned_cols=17 Identities=29% Similarity=0.829 Sum_probs=11.6
Q ss_pred cceeeeecccccccCCc
Q 032128 89 ENWFCARCLNTVKAAGE 105 (147)
Q Consensus 89 e~wf~ARcvNt~~p~Ge 105 (147)
..|||.+|.+.....-+
T Consensus 42 g~W~C~~C~~~~~~~~~ 58 (60)
T 2puy_A 42 GMWICPRCQDQMLKKEE 58 (60)
T ss_dssp SCCCCHHHHHHHHHTTT
T ss_pred CceEChhccChhhchhc
Confidence 47999999876554333
No 28
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=21.52 E-value=1.5e+02 Score=22.49 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=27.0
Q ss_pred hCcccccchhhHHHHHHhhCCceeeeEEecC-----------ceEEEEeeecc
Q 032128 49 EGMKADPVDLTEFVDFVKLNKLQTDCFFIGK-----------NQYIVTTIHEN 90 (147)
Q Consensus 49 eG~~~~~~e~~~fiDfi~~nnL~tE~f~Ig~-----------nqYlVTsIhe~ 90 (147)
+|..+. .++...++..++ .-|.|.||+ +++.+|-|+-.
T Consensus 72 ~~v~v~-~sl~eal~~l~~---~~~i~viGG~~iy~~~l~l~Del~lT~i~~~ 120 (178)
T 3tq8_A 72 EGCDIF-YSLDDALSALTK---EPEVIIIGGARIFKEALPKADKMILTIINHS 120 (178)
T ss_dssp TTSEEE-SSHHHHHHHTTT---CSEEEEEECHHHHHHHGGGCSEEEEEEESSC
T ss_pred CCeEEE-CCHHHHHHHhhC---CCCEEEECCHHHHHHHHHhCCEEEEEEcccc
Confidence 466554 477777777776 358999998 56688888744
No 29
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.38 E-value=16 Score=22.85 Aligned_cols=14 Identities=29% Similarity=1.054 Sum_probs=10.8
Q ss_pred ecceeeeecccccc
Q 032128 88 HENWFCARCLNTVK 101 (147)
Q Consensus 88 he~wf~ARcvNt~~ 101 (147)
.+.|||.+|....+
T Consensus 50 ~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 50 DEKWLCRQCVFATT 63 (66)
T ss_dssp SCCCCCHHHHHTTS
T ss_pred CCCEECCCCcCccc
Confidence 36899999987554
Done!