BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032130
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z2W|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2W|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2X|A Chain A, Crystal Structure Of Mouse Vps29
pdb|1Z2X|B Chain B, Crystal Structure Of Mouse Vps29
pdb|3PSN|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSN|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSO|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
pdb|3PSO|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
Length = 192
Score = 188 bits (477), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 83/139 (59%), Positives = 113/139 (81%)
Query: 2 EVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQ 61
E +DYLK+L D+H+ RG++DE+ YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQ
Sbjct: 54 ESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQ 113
Query: 62 RQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVY 121
RQ DVDIL++GHTH+F+A++HE INPGSATGAY++ ++ PSFVLMDI VV Y
Sbjct: 114 RQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTY 173
Query: 122 VYELIDGEVKVDKIDFKKT 140
VY+LI +VKV++I++KK+
Sbjct: 174 VYQLIGDDVKVERIEYKKS 192
>pdb|1W24|A Chain A, Crystal Structure Of Human Vps29
Length = 182
Score = 187 bits (476), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 83/138 (60%), Positives = 112/138 (81%)
Query: 2 EVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQ 61
E +DYLK+L D+H+ RG++DE+ YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQ
Sbjct: 44 ESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQ 103
Query: 62 RQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVY 121
RQ DVDIL++GHTH+F+A++HE INPGSATGAY++ ++ PSFVLMDI VV Y
Sbjct: 104 RQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTY 163
Query: 122 VYELIDGEVKVDKIDFKK 139
VY+LI +VKV++I++KK
Sbjct: 164 VYQLIGDDVKVERIEYKK 181
>pdb|2R17|A Chain A, Functional Architecture Of The Retromer Cargo-Recognition
Complex
pdb|2R17|B Chain B, Functional Architecture Of The Retromer Cargo-Recognition
Complex
Length = 183
Score = 183 bits (464), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 110/138 (79%)
Query: 2 EVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQ 61
E +DYLK+L D+H+ RG++DE+ YPE K +T+GQFK+G+ HGHQVIPWGD SLA+LQ
Sbjct: 45 ESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDXASLALLQ 104
Query: 62 RQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVY 121
RQ DVDIL++GHTH+F+A++HE INPGSATGAY++ ++ PSFVL DI VV Y
Sbjct: 105 RQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLXDIQASTVVTY 164
Query: 122 VYELIDGEVKVDKIDFKK 139
VY+LI +VKV++I++KK
Sbjct: 165 VYQLIGDDVKVERIEYKK 182
>pdb|2A22|A Chain A, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
pdb|2A22|B Chain B, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
Length = 215
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 9/147 (6%)
Query: 2 EVHDYLKSLCPDLHVTRGEYDE---------DSRYPETKTLTIGQFKLGICHGHQVIPWG 52
E + LK++ ++++ G+ D + +PE + IG+FK+G+ HG+QV+PW
Sbjct: 69 EYVEMLKNITKNVYIVSGDLDSAIFNPDPESNGVFPEYVVVQIGEFKIGLMHGNQVLPWD 128
Query: 53 DLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMD 112
D SL QR+LD DILVTGHTH+ + ++ G + +NPG+ATGA+S+ T D PSF+LM
Sbjct: 129 DPGSLEQWQRRLDCDILVTGHTHKLRVFEKNGKLFLNPGTATGAFSALTPDAPPSFMLMA 188
Query: 113 IDGLRVVVYVYELIDGEVKVDKIDFKK 139
+ G +VV+YVY+L DG+ V +F K
Sbjct: 189 LQGNKVVLYVYDLRDGKTNVAMSEFSK 215
>pdb|2KKN|A Chain A, Solution Nmr Structure Of Themotoga Maritima Protein
Tm1076: Northeast Structural Genomics Consortium Target
Vt57
Length = 178
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 22 DEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYK 81
D P +K L + +G+CHG PW D L + + +++ GHTH+ +
Sbjct: 87 DVKEHLPFSKVLLVEGVTIGMCHGWGA-PWDLKDRLLKVFNE-KPQVILFGHTHEPEDTV 144
Query: 82 HEGGVVINPGS-ATGAYSSFTFD 103
G +NPGS A G+Y+ D
Sbjct: 145 KAGVRFLNPGSLAEGSYAVLELD 167
>pdb|3CK2|A Chain A, Crystal Structure Of Conserved Uncharacterized Protein
(Predicted Phosphoesterase Cog0622) From Streptococcus
Pneumoniae Tigr4
Length = 176
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 10 LCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDIL 69
L + V +G D + YPE +G K+ HGH + L ++ + I
Sbjct: 50 LWEGIRVVKGNXDFYAGYPERLVTELGSTKIIQTHGHLFDINFNFQKLDYWAQEEEAAIC 109
Query: 70 VTGHTHQFKAYKHEGGVVINPGSAT 94
+ GH H A+ + +NPGS +
Sbjct: 110 LYGHLHVPSAWLEGKILFLNPGSIS 134
>pdb|3QFM|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFM|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFN|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFN|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFO|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
pdb|3QFO|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
Length = 270
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 35 IGQFKLGICH-------GHQVIPWGDLDSLAMLQRQLDVDILVTGHTH-QFKAYKHEGGV 86
G +GI H G ++I G + L DI V GH H Q Y G +
Sbjct: 127 FGDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPPCDIAVYGHIHQQLLRYGTGGQL 186
Query: 87 VINPGSATGAY---SSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVD 133
++NPGS + + D+ +++++ D +V + +D +V +
Sbjct: 187 IVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLVDMDFRRVDYDVAAE 236
>pdb|2AHD|A Chain A, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|B Chain B, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|C Chain C, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|D Chain D, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
Length = 165
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 22 DEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYK 81
+E++ + ++ I K I HGH L M + D+++ GHTH+ +
Sbjct: 75 NEENIIDDFISVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEE 128
Query: 82 HEGGVVINPGSATG 95
+ +VINPG G
Sbjct: 129 VDDVLVINPGECCG 142
>pdb|1S3L|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3L|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
Length = 190
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 32 TLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPG 91
++ I K I HGH L M + D+++ GHTH+ + + +VINPG
Sbjct: 110 SVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPG 163
Query: 92 SATG 95
G
Sbjct: 164 ECCG 167
>pdb|3QFK|A Chain A, 2.05 Angstrom Crystal Structure Of Putative
5'-Nucleotidase From Staphylococcus Aureus In Complex
With Alpha-Ketoglutarate
Length = 527
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 65 DVDILVTGHTHQFKAYKHEGGVVINPGS 92
D+DI +TGH H+ A + + VI PG+
Sbjct: 239 DIDIFITGHQHRQIAERFKQTAVIQPGT 266
>pdb|2QR4|A Chain A, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
pdb|2QR4|B Chain B, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
Length = 587
Score = 29.3 bits (64), Expect = 0.76, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 86 VVINPGSATGAYSSFTFDVNPSFVL 110
VV N G +GAYSS ++D NP +L
Sbjct: 331 VVENKGKRSGAYSSGSYDTNPYILL 355
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 21 YDEDSRYPETKTLTIGQFKLGICHGHQVI 49
Y ED+ + + TIG+ LGIC+G Q++
Sbjct: 81 YAEDAPWFDPAIFTIGKPVLGICYGMQMM 109
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 51 WGDLDSLAMLQRQLDVDILVTGHTHQ 76
W D SL ++Q+Q+DV L+TGH Q
Sbjct: 287 WYDAQSLNLIQQQIDV--LMTGHAWQ 310
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 21 YDEDSRYPETKTLTIGQFKLGICHGHQVI 49
Y ED+ + + TIG+ LGIC+G Q++
Sbjct: 86 YAEDAPWFDPAIFTIGKPVLGICYGMQMM 114
>pdb|1SU1|A Chain A, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|B Chain B, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|C Chain C, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|D Chain D, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
Length = 208
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 39 KLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYS 98
+L + HGH P ++L L + D+LV GHTH A + NPGS
Sbjct: 124 RLFLTHGHLFGP----ENLPALNQN---DVLVYGHTHLPVAEQRGEIFHFNPGSV----- 171
Query: 99 SFTFDVNP-SFVLMDIDGLRVVVYVYELIDGEVKVD 133
S NP S+ ++D D L V+ + I +V ++
Sbjct: 172 SIPKGGNPASYGMLDNDVLSVIALNDQSIIAQVAIN 207
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 102 FDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTATTR 144
FDVN + +L D + LR VY+L D E+ + ++ + ++T
Sbjct: 298 FDVNKANILGD-NFLRSAYIVYDLDDNEISIAQVKYTSASSTS 339
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 18 RGEYDEDSRYPETKTLTIGQFKLGICHGHQVI 49
R +D D+ P+ + + G LGIC+G Q++
Sbjct: 53 RSVFDPDAPRPDPRLFSSGLPLLGICYGXQLL 84
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 18 RGEYDEDSRYPETKTLTIGQFKLGICHGHQVI 49
R +D D+ P+ + + G LGIC+G Q++
Sbjct: 53 RSVFDPDAPRPDPRLFSSGLPLLGICYGMQLL 84
>pdb|3PDT|A Chain A, Crystal Structure Of The C-Terminal Truncated Alpha-Kinase
Domain Of Myosin Heavy Chain Kinase
Length = 275
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 76 QFKAYKHEGGVVINPGSATGAYSSFTFDV-NPSFVLMDIDGL 116
+FK G V+ S A+S FT+++ N +++DI G+
Sbjct: 185 EFKKNNSNYGAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGV 226
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 62 RQLDVDILVTGHTHQFKAYKHEG---------GVVINPGSATG--AYSSFTFDVNPSFVL 110
RQLD + HT AY+ EG G V+ PG+ +S + P VL
Sbjct: 205 RQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
Query: 111 MDI 113
+DI
Sbjct: 265 VDI 267
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 62 RQLDVDILVTGHTHQFKAYKHEG---------GVVINPGSATG--AYSSFTFDVNPSFVL 110
RQLD + HT AY+ EG G V+ PG+ +S + P VL
Sbjct: 205 RQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
Query: 111 MDI 113
+DI
Sbjct: 265 VDI 267
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 62 RQLDVDILVTGHTHQFKAYKHEG---------GVVINPGSATG--AYSSFTFDVNPSFVL 110
RQLD + HT AY+ EG G V+ PG+ +S + P VL
Sbjct: 205 RQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
Query: 111 MDI 113
+DI
Sbjct: 265 VDI 267
>pdb|3LKM|A Chain A, 1.6 Angstrom Crystal Structure Of The Alpha-Kinase Domain
Of Myosin Heavy Chain Kinase A Complex With Amp
pdb|3LLA|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
pdb|3LLA|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
Length = 307
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 76 QFKAYKHEGGVVINPGSATGAYSSFTFDV-NPSFVLMDIDGL 116
+FK G V+ S A+S FT+++ N +++DI G+
Sbjct: 185 EFKKNNSNYGAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGV 226
>pdb|3LMI|A Chain A, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|B Chain B, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|C Chain C, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|D Chain D, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
Length = 307
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 76 QFKAYKHEGGVVINPGSATGAYSSFTFDV-NPSFVLMDIDGL 116
+FK G V+ S A+S FT+++ N +++DI G+
Sbjct: 185 EFKKNNSNYGAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGV 226
>pdb|3LMH|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
pdb|3LMH|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
Length = 307
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 76 QFKAYKHEGGVVINPGSATGAYSSFTFDV-NPSFVLMDIDGL 116
+FK G V+ S A+S FT+++ N +++DI G+
Sbjct: 185 EFKKNNSNYGAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGV 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,755,935
Number of Sequences: 62578
Number of extensions: 196834
Number of successful extensions: 359
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 25
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)