Query 032130
Match_columns 147
No_of_seqs 108 out of 1149
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07394 MPP_Vps29 Homo sapiens 100.0 7.3E-32 1.6E-36 200.5 19.0 136 2-137 43-178 (178)
2 KOG3325 Membrane coat complex 100.0 2.5E-27 5.5E-32 168.8 17.0 139 1-139 43-182 (183)
3 COG0622 Predicted phosphoester 99.9 8.9E-27 1.9E-31 172.2 15.7 120 3-126 43-166 (172)
4 TIGR00040 yfcE phosphoesterase 99.9 2.3E-24 5E-29 156.6 14.7 114 2-119 42-156 (158)
5 cd00841 MPP_YfcE Escherichia c 99.9 6.6E-23 1.4E-27 148.0 13.3 105 12-122 47-154 (155)
6 PRK09453 phosphodiesterase; Pr 99.9 2.3E-22 4.9E-27 149.4 13.7 114 2-130 54-175 (182)
7 PF12850 Metallophos_2: Calcin 99.8 2.4E-18 5.3E-23 123.1 12.6 108 2-115 40-155 (156)
8 cd07379 MPP_239FB Homo sapiens 99.5 6.7E-14 1.5E-18 99.0 8.9 81 3-91 41-135 (135)
9 cd07398 MPP_YbbF-LpxH Escheric 99.4 6E-13 1.3E-17 100.4 9.6 83 11-93 69-217 (217)
10 PRK05340 UDP-2,3-diacylglucosa 99.4 2.6E-12 5.7E-17 99.3 12.8 106 5-121 64-236 (241)
11 TIGR01854 lipid_A_lpxH UDP-2,3 99.4 1.9E-12 4.1E-17 99.6 11.5 100 4-112 61-227 (231)
12 COG2129 Predicted phosphoester 99.4 1.6E-12 3.4E-17 99.0 8.9 75 39-123 140-224 (226)
13 cd07388 MPP_Tt1561 Thermus the 99.4 7.7E-12 1.7E-16 96.2 12.8 70 38-118 149-221 (224)
14 cd07400 MPP_YydB Bacillus subt 99.4 1.7E-12 3.7E-17 92.3 8.4 72 5-92 59-144 (144)
15 COG2908 Uncharacterized protei 99.4 2.3E-12 4.9E-17 99.0 8.4 93 3-95 56-217 (237)
16 cd07403 MPP_TTHA0053 Thermus t 99.3 6.6E-12 1.4E-16 88.7 8.4 74 3-91 36-122 (129)
17 cd07424 MPP_PrpA_PrpB PrpA and 99.3 7.2E-12 1.6E-16 94.8 8.4 92 2-95 47-198 (207)
18 PRK09968 serine/threonine-spec 99.3 7.9E-12 1.7E-16 95.6 7.4 91 2-94 61-208 (218)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.2 5.3E-11 1.1E-15 87.4 7.4 56 36-91 123-188 (188)
20 cd07390 MPP_AQ1575 Aquifex aeo 99.2 8.1E-11 1.8E-15 86.4 6.7 78 4-92 62-151 (168)
21 PF14582 Metallophos_3: Metall 99.1 5.7E-10 1.2E-14 85.4 8.9 74 37-120 174-252 (255)
22 cd07395 MPP_CSTP1 Homo sapiens 99.1 6.5E-09 1.4E-13 80.9 14.2 67 55-125 196-262 (262)
23 cd07402 MPP_GpdQ Enterobacter 99.1 3.2E-09 7E-14 81.1 11.7 60 38-97 145-214 (240)
24 PRK11148 cyclic 3',5'-adenosin 99.0 1.8E-09 3.8E-14 85.0 9.9 93 38-130 158-266 (275)
25 PRK11439 pphA serine/threonine 99.0 4.5E-10 9.7E-15 85.8 5.6 91 2-94 63-208 (218)
26 PRK04036 DNA polymerase II sma 98.9 2.8E-08 6.2E-13 84.6 13.6 93 3-95 320-470 (504)
27 cd07423 MPP_PrpE Bacillus subt 98.9 5.9E-09 1.3E-13 80.4 7.1 92 2-95 56-211 (234)
28 cd07386 MPP_DNA_pol_II_small_a 98.9 2.8E-08 6.2E-13 76.8 10.3 92 4-95 72-221 (243)
29 cd07393 MPP_DR1119 Deinococcus 98.8 8.3E-08 1.8E-12 73.9 10.6 58 39-96 167-229 (232)
30 cd00840 MPP_Mre11_N Mre11 nucl 98.8 9.3E-09 2E-13 77.4 4.5 59 37-95 157-219 (223)
31 cd07404 MPP_MS158 Microscilla 98.8 3.8E-08 8.2E-13 71.6 7.5 79 12-90 56-163 (166)
32 cd00838 MPP_superfamily metall 98.8 4.2E-08 9.1E-13 66.6 7.2 68 7-91 54-131 (131)
33 cd07378 MPP_ACP5 Homo sapiens 98.6 6.7E-07 1.5E-11 69.9 11.5 89 38-126 168-276 (277)
34 cd07383 MPP_Dcr2 Saccharomyces 98.6 7.1E-08 1.5E-12 72.3 5.5 93 4-96 69-195 (199)
35 TIGR00024 SbcD_rel_arch putati 98.6 3.9E-07 8.5E-12 70.2 9.1 66 3-80 81-149 (225)
36 cd07396 MPP_Nbla03831 Homo sap 98.6 1.2E-06 2.5E-11 68.7 11.9 59 55-118 205-264 (267)
37 cd07425 MPP_Shelphs Shewanella 98.5 2.6E-07 5.7E-12 70.2 6.3 88 2-93 51-198 (208)
38 COG4186 Predicted phosphoester 98.5 2.6E-07 5.5E-12 67.2 5.9 88 3-92 65-161 (186)
39 cd07391 MPP_PF1019 Pyrococcus 98.4 3.5E-07 7.6E-12 67.3 5.0 59 11-82 75-138 (172)
40 cd07399 MPP_YvnB Bacillus subt 98.4 5E-06 1.1E-10 63.3 10.2 107 3-116 61-202 (214)
41 TIGR00583 mre11 DNA repair pro 98.3 8.4E-06 1.8E-10 67.8 11.6 75 64-139 227-307 (405)
42 cd07397 MPP_DevT Myxococcus xa 98.3 1.8E-06 3.8E-11 67.1 7.0 60 34-94 144-235 (238)
43 cd00839 MPP_PAPs purple acid p 98.3 1.2E-05 2.6E-10 63.3 11.4 76 55-130 183-286 (294)
44 PF00149 Metallophos: Calcineu 98.3 1.2E-06 2.6E-11 60.9 4.2 44 34-77 147-200 (200)
45 PRK11340 phosphodiesterase Yae 98.1 2.4E-05 5.3E-10 61.6 9.4 16 61-76 198-213 (271)
46 PTZ00422 glideosome-associated 98.1 0.00011 2.5E-09 60.8 12.9 100 37-136 214-328 (394)
47 COG1311 HYS2 Archaeal DNA poly 98.0 5.1E-05 1.1E-09 63.8 9.8 85 12-96 309-449 (481)
48 COG1768 Predicted phosphohydro 98.0 1.6E-05 3.4E-10 59.4 5.8 41 38-78 160-200 (230)
49 COG1409 Icc Predicted phosphoh 97.9 8.3E-05 1.8E-09 57.7 8.4 68 55-124 169-244 (301)
50 cd07406 MPP_CG11883_N Drosophi 97.9 0.00096 2.1E-08 52.1 14.1 36 60-95 189-225 (257)
51 cd07411 MPP_SoxB_N Thermus the 97.8 0.0008 1.7E-08 52.7 13.3 32 64-95 206-240 (264)
52 TIGR03729 acc_ester putative p 97.6 0.00015 3.2E-09 55.8 6.2 54 37-90 165-235 (239)
53 cd07385 MPP_YkuE_C Bacillus su 97.6 0.0013 2.9E-08 49.4 10.9 19 62-80 151-169 (223)
54 cd07384 MPP_Cdc1_like Saccharo 97.6 7.3E-05 1.6E-09 55.1 3.7 74 12-95 88-168 (171)
55 cd00144 MPP_PPP_family phospho 97.5 0.00052 1.1E-08 51.8 7.8 35 60-94 175-212 (225)
56 PRK13625 bis(5'-nucleosyl)-tet 97.5 0.00085 1.8E-08 52.1 8.9 30 65-94 184-213 (245)
57 PLN02533 probable purple acid 97.4 0.0032 7E-08 52.8 12.1 88 56-143 313-422 (427)
58 cd07410 MPP_CpdB_N Escherichia 97.4 0.0011 2.3E-08 52.2 8.6 59 37-95 185-249 (277)
59 PHA02546 47 endonuclease subun 97.4 0.0013 2.7E-08 53.6 9.2 50 64-118 178-227 (340)
60 cd08165 MPP_MPPE1 human MPPE1 97.3 0.00028 6E-09 51.3 4.1 72 12-93 77-151 (156)
61 COG1407 Predicted ICC-like pho 97.2 0.0012 2.7E-08 51.1 6.6 53 13-78 99-156 (235)
62 cd07405 MPP_UshA_N Escherichia 97.2 0.0036 7.8E-08 49.7 9.4 59 37-95 175-258 (285)
63 COG1408 Predicted phosphohydro 97.2 0.0029 6.4E-08 50.4 8.6 20 61-80 208-227 (284)
64 cd07409 MPP_CD73_N CD73 ecto-5 97.2 0.0037 8E-08 49.5 9.1 36 60-95 200-256 (281)
65 cd07387 MPP_PolD2_C PolD2 (DNA 97.2 0.0093 2E-07 46.9 11.2 97 12-117 95-251 (257)
66 cd08164 MPP_Ted1 Saccharomyces 97.1 0.00052 1.1E-08 51.8 3.7 59 12-80 99-159 (193)
67 cd08166 MPP_Cdc1_like_1 unchar 97.1 0.0022 4.7E-08 48.5 6.7 75 12-89 81-159 (195)
68 cd07412 MPP_YhcR_N Bacillus su 96.9 0.0069 1.5E-07 48.1 8.8 59 37-95 193-262 (288)
69 cd07408 MPP_SA0022_N Staphyloc 96.9 0.0067 1.4E-07 47.3 8.0 58 37-95 173-234 (257)
70 cd07401 MPP_TMEM62_N Homo sapi 96.8 0.0032 7E-08 49.1 5.7 59 37-95 166-234 (256)
71 COG0420 SbcD DNA repair exonuc 96.7 0.0066 1.4E-07 50.0 7.4 52 65-117 201-252 (390)
72 TIGR03767 P_acnes_RR metalloph 96.7 0.019 4.1E-07 48.9 9.6 82 37-126 338-445 (496)
73 cd00845 MPP_UshA_N_like Escher 96.7 0.011 2.4E-07 45.5 7.7 32 64-95 193-226 (252)
74 cd07422 MPP_ApaH Escherichia c 96.5 0.0063 1.4E-07 47.8 5.5 48 2-51 45-125 (257)
75 PRK09418 bifunctional 2',3'-cy 96.4 0.016 3.5E-07 52.1 8.4 58 38-95 247-307 (780)
76 cd07407 MPP_YHR202W_N Saccharo 96.3 0.015 3.3E-07 46.2 6.7 57 39-95 191-250 (282)
77 cd07417 MPP_PP5_C PP5, C-termi 96.3 0.089 1.9E-06 42.6 11.1 24 55-78 234-257 (316)
78 cd07382 MPP_DR1281 Deinococcus 96.3 0.072 1.6E-06 41.9 10.2 93 2-95 49-200 (255)
79 PRK00166 apaH diadenosine tetr 96.3 0.0087 1.9E-07 47.5 5.1 23 2-24 47-69 (275)
80 TIGR00668 apaH bis(5'-nucleosy 96.2 0.0096 2.1E-07 47.4 4.9 48 2-51 47-127 (279)
81 cd07413 MPP_PA3087 Pseudomonas 96.2 0.0061 1.3E-07 46.7 3.7 28 67-94 178-207 (222)
82 PRK09558 ushA bifunctional UDP 96.1 0.045 9.7E-07 47.3 9.1 74 37-119 211-309 (551)
83 cd08163 MPP_Cdc1 Saccharomyces 96.1 0.019 4E-07 45.1 6.2 22 58-79 209-230 (257)
84 PRK11907 bifunctional 2',3'-cy 96.0 0.033 7.1E-07 50.4 8.0 58 38-95 312-390 (814)
85 TIGR01530 nadN NAD pyrophospha 96.0 0.056 1.2E-06 46.8 9.1 21 3-24 74-94 (550)
86 smart00854 PGA_cap Bacterial c 95.8 0.047 1E-06 42.0 7.3 53 36-88 173-229 (239)
87 TIGR01390 CycNucDiestase 2',3' 95.8 0.035 7.6E-07 48.8 7.2 58 38-95 198-272 (626)
88 PRK09420 cpdB bifunctional 2', 95.7 0.075 1.6E-06 47.0 8.9 59 37-95 220-295 (649)
89 smart00156 PP2Ac Protein phosp 95.6 0.47 1E-05 37.5 12.2 24 54-77 200-223 (271)
90 KOG2310 DNA repair exonuclease 95.5 0.14 3.1E-06 44.2 9.4 74 66-141 239-319 (646)
91 COG0639 ApaH Diadenosine tetra 95.5 0.013 2.9E-07 40.2 2.8 93 19-116 28-124 (155)
92 PRK09419 bifunctional 2',3'-cy 95.4 0.082 1.8E-06 49.6 8.4 58 38-95 237-312 (1163)
93 PRK09419 bifunctional 2',3'-cy 95.4 0.066 1.4E-06 50.3 7.7 58 38-95 841-900 (1163)
94 cd07381 MPP_CapA CapA and rela 95.3 0.089 1.9E-06 40.4 7.1 53 36-88 175-231 (239)
95 TIGR00282 metallophosphoestera 94.7 0.43 9.3E-06 37.8 9.6 93 2-95 50-203 (266)
96 PF09587 PGA_cap: Bacterial ca 94.6 0.17 3.6E-06 39.2 6.9 58 36-93 184-246 (250)
97 cd07414 MPP_PP1_PPKL PP1, PPKL 94.4 0.44 9.6E-06 38.1 9.2 24 55-78 223-246 (293)
98 KOG1378 Purple acid phosphatas 94.3 0.41 9E-06 40.5 9.1 88 56-143 323-441 (452)
99 cd08162 MPP_PhoA_N Synechococc 94.3 0.15 3.3E-06 41.1 6.3 35 38-78 210-245 (313)
100 KOG1432 Predicted DNA repair e 94.2 1.1 2.4E-05 36.8 10.9 69 63-132 297-368 (379)
101 cd00842 MPP_ASMase acid sphing 94.2 0.17 3.8E-06 39.9 6.3 44 39-82 216-266 (296)
102 PTZ00480 serine/threonine-prot 93.8 0.74 1.6E-05 37.4 9.4 25 54-78 231-255 (320)
103 PTZ00239 serine/threonine prot 93.8 0.89 1.9E-05 36.6 9.7 24 55-78 216-239 (303)
104 PHA03008 hypothetical protein; 93.5 0.28 6.2E-06 37.2 6.0 57 36-92 160-222 (234)
105 cd07380 MPP_CWF19_N Schizosacc 93.4 0.24 5.2E-06 35.8 5.4 40 37-76 69-121 (150)
106 cd07415 MPP_PP2A_PP4_PP6 PP2A, 92.1 3.9 8.4E-05 32.6 11.2 26 54-79 214-239 (285)
107 KOG2679 Purple (tartrate-resis 91.4 3.1 6.7E-05 33.4 9.6 95 36-130 208-322 (336)
108 cd07416 MPP_PP2B PP2B, metallo 91.2 3.9 8.4E-05 32.9 10.4 23 55-77 223-245 (305)
109 PTZ00244 serine/threonine-prot 91.0 3.7 8.1E-05 32.9 10.0 24 55-78 225-248 (294)
110 TIGR03768 RPA4764 metallophosp 91.0 1.9 4.2E-05 36.9 8.6 25 56-80 389-414 (492)
111 COG0737 UshA 5'-nucleotidase/2 90.6 0.22 4.9E-06 42.6 2.9 30 66-95 236-270 (517)
112 cd07418 MPP_PP7 PP7, metalloph 88.8 0.67 1.5E-05 38.5 4.2 21 55-75 274-294 (377)
113 cd07420 MPP_RdgC Drosophila me 88.6 0.95 2.1E-05 36.8 5.0 56 2-61 97-187 (321)
114 cd07419 MPP_Bsu1_C Arabidopsis 87.8 0.75 1.6E-05 37.1 3.9 23 2-24 101-127 (311)
115 cd00839 MPP_PAPs purple acid p 87.3 4.4 9.5E-05 31.6 7.9 34 12-45 69-125 (294)
116 cd07405 MPP_UshA_N Escherichia 85.9 6.7 0.00015 31.0 8.3 40 3-43 67-134 (285)
117 PRK10966 exonuclease subunit S 81.6 4.2 9.2E-05 34.0 5.7 60 65-127 220-281 (407)
118 cd00844 MPP_Dbr1_N Dbr1 RNA la 79.4 4 8.7E-05 32.1 4.7 44 36-79 164-230 (262)
119 PRK10966 exonuclease subunit S 79.4 1.6 3.4E-05 36.6 2.5 21 4-24 67-87 (407)
120 TIGR00619 sbcd exonuclease Sbc 78.5 1.7 3.6E-05 33.9 2.3 21 4-24 67-88 (253)
121 TIGR03729 acc_ester putative p 77.0 2.4 5.1E-05 32.4 2.7 21 4-24 53-74 (239)
122 PLN02533 probable purple acid 74.2 28 0.0006 29.4 8.6 34 12-45 199-257 (427)
123 cd07410 MPP_CpdB_N Escherichia 71.3 12 0.00026 29.1 5.5 21 3-24 75-95 (277)
124 PHA02239 putative protein phos 70.8 3.3 7.1E-05 32.0 2.1 29 66-94 191-221 (235)
125 PRK09558 ushA bifunctional UDP 69.7 11 0.00024 32.7 5.3 21 3-24 101-121 (551)
126 PRK09982 universal stress prot 68.2 5.9 0.00013 27.5 2.9 32 38-76 82-113 (142)
127 cd00844 MPP_Dbr1_N Dbr1 RNA la 67.2 25 0.00055 27.6 6.5 35 13-47 75-125 (262)
128 cd00845 MPP_UshA_N_like Escher 66.4 20 0.00042 27.3 5.7 22 2-24 61-82 (252)
129 cd07421 MPP_Rhilphs Rhilph pho 65.7 4.6 0.0001 32.6 2.0 27 66-94 255-281 (304)
130 PF03808 Glyco_tran_WecB: Glyc 65.2 2.8 6.1E-05 30.7 0.7 68 5-73 42-109 (172)
131 KOG3818 DNA polymerase epsilon 64.8 13 0.00027 31.9 4.5 45 65-117 472-517 (525)
132 cd07408 MPP_SA0022_N Staphyloc 63.7 16 0.00034 28.3 4.7 21 3-24 62-82 (257)
133 COG0796 MurI Glutamate racemas 63.3 2.9 6.2E-05 33.2 0.5 32 61-92 173-210 (269)
134 TIGR00067 glut_race glutamate 60.8 4 8.6E-05 31.9 0.8 33 63-95 170-208 (251)
135 cd07381 MPP_CapA CapA and rela 60.2 19 0.0004 27.4 4.5 43 2-44 68-137 (239)
136 COG1692 Calcineurin-like phosp 58.6 43 0.00093 26.5 6.1 93 2-95 50-202 (266)
137 smart00854 PGA_cap Bacterial c 58.3 21 0.00046 27.2 4.5 23 2-24 64-86 (239)
138 COG1922 WecG Teichoic acid bio 56.2 16 0.00034 28.8 3.5 38 34-72 131-168 (253)
139 KOG0371 Serine/threonine prote 56.0 13 0.00028 29.7 3.0 23 2-24 105-131 (319)
140 TIGR00619 sbcd exonuclease Sbc 55.6 4.9 0.00011 31.2 0.6 30 65-95 213-242 (253)
141 PRK13015 3-dehydroquinate dehy 55.2 15 0.00033 26.5 3.0 58 38-95 2-80 (146)
142 cd06533 Glyco_transf_WecG_TagA 52.7 4.5 9.8E-05 29.6 -0.0 40 32-72 67-106 (171)
143 cd07378 MPP_ACP5 Homo sapiens 52.2 8.1 0.00018 29.8 1.3 14 11-24 70-83 (277)
144 cd07421 MPP_Rhilphs Rhilph pho 50.9 84 0.0018 25.5 6.9 22 2-23 53-79 (304)
145 PF01220 DHquinase_II: Dehydro 50.3 8.3 0.00018 27.7 1.0 58 38-95 1-79 (140)
146 PRK05395 3-dehydroquinate dehy 50.0 25 0.00054 25.4 3.4 58 38-95 2-80 (146)
147 PRK15005 universal stress prot 49.0 33 0.00072 23.3 4.0 31 39-76 87-117 (144)
148 TIGR01088 aroQ 3-dehydroquinat 48.3 26 0.00056 25.2 3.3 57 39-95 1-78 (141)
149 PF13277 YmdB: YmdB-like prote 48.1 1.4E+02 0.003 23.6 8.8 93 2-95 47-198 (253)
150 cd01984 AANH_like Adenine nucl 47.5 25 0.00055 21.9 2.9 26 54-79 37-62 (86)
151 KOG1625 DNA polymerase alpha-p 45.8 20 0.00044 31.4 2.8 45 64-114 534-578 (600)
152 KOG2836 Protein tyrosine phosp 44.8 73 0.0016 23.0 5.1 67 27-96 6-75 (173)
153 COG2843 PgsA Putative enzyme o 44.5 81 0.0017 26.3 6.0 53 36-88 224-281 (372)
154 PRK00865 glutamate racemase; P 43.9 12 0.00025 29.3 1.0 33 63-95 175-213 (261)
155 cd00466 DHQase_II Dehydroquina 43.1 24 0.00052 25.3 2.4 57 39-95 1-78 (140)
156 PRK15456 universal stress prot 43.0 52 0.0011 22.4 4.2 44 39-95 85-128 (142)
157 KOG0372 Serine/threonine speci 42.7 50 0.0011 26.3 4.3 18 7-24 96-114 (303)
158 COG0788 PurU Formyltetrahydrof 40.7 13 0.00028 29.7 0.8 57 9-73 115-174 (287)
159 KOG3947 Phosphoesterases [Gene 36.4 54 0.0012 26.4 3.7 58 35-92 211-280 (305)
160 PRK15118 universal stress glob 36.1 64 0.0014 21.9 3.8 30 40-75 84-113 (144)
161 TIGR02855 spore_yabG sporulati 35.4 33 0.00072 27.5 2.3 24 53-76 141-165 (283)
162 cd01988 Na_H_Antiporter_C The 35.1 49 0.0011 21.8 3.0 24 55-78 84-107 (132)
163 PRK10200 putative racemase; Pr 34.4 36 0.00078 26.1 2.4 18 63-80 187-204 (230)
164 cd01987 USP_OKCHK USP domain i 33.5 56 0.0012 21.5 3.1 25 55-79 75-99 (124)
165 KOG0373 Serine/threonine speci 32.5 64 0.0014 25.3 3.5 19 6-24 98-117 (306)
166 PF02882 THF_DHG_CYH_C: Tetrah 32.2 20 0.00042 26.2 0.6 72 14-95 38-112 (160)
167 PRK03011 butyrate kinase; Prov 31.9 26 0.00055 28.9 1.3 12 84-95 3-14 (358)
168 PF00837 T4_deiodinase: Iodoth 31.5 16 0.00035 28.5 0.1 35 81-115 100-144 (237)
169 COG3019 Predicted metal-bindin 31.4 1.1E+02 0.0023 22.2 4.2 26 101-126 122-147 (149)
170 PRK08654 pyruvate carboxylase 31.0 2.3E+02 0.0051 24.3 7.0 70 3-77 17-86 (499)
171 cd01715 ETF_alpha The electron 30.6 60 0.0013 23.3 3.0 70 4-76 21-94 (168)
172 cd03413 CbiK_C Anaerobic cobal 29.7 76 0.0016 21.2 3.1 37 39-75 3-39 (103)
173 PF00871 Acetate_kinase: Aceto 29.5 31 0.00068 28.8 1.4 23 85-118 2-24 (388)
174 PF01764 Lipase_3: Lipase (cla 29.3 49 0.0011 22.3 2.2 19 56-74 53-72 (140)
175 PF02844 GARS_N: Phosphoribosy 29.3 66 0.0014 21.6 2.7 22 52-73 49-70 (100)
176 COG0112 GlyA Glycine/serine hy 29.1 78 0.0017 26.8 3.6 27 53-79 154-180 (413)
177 cd01985 ETF The electron trans 28.8 62 0.0013 23.4 2.8 22 55-76 81-102 (181)
178 PTZ00235 DNA polymerase epsilo 28.3 1.5E+02 0.0033 23.9 5.0 44 65-117 234-283 (291)
179 PF04042 DNA_pol_E_B: DNA poly 28.3 62 0.0013 23.8 2.8 37 12-48 79-139 (209)
180 COG1974 LexA SOS-response tran 27.5 2.7E+02 0.0059 21.0 6.5 53 68-129 115-167 (201)
181 cd01992 PP-ATPase N-terminal d 27.4 71 0.0015 22.8 2.9 22 56-77 87-108 (185)
182 PRK14168 bifunctional 5,10-met 27.4 43 0.00093 27.0 1.8 80 3-92 148-238 (297)
183 PF01171 ATP_bind_3: PP-loop f 27.0 62 0.0013 23.5 2.5 20 56-75 87-106 (182)
184 PF06925 MGDG_synth: Monogalac 26.8 72 0.0016 22.8 2.8 20 56-75 80-99 (169)
185 cd01986 Alpha_ANH_like Adenine 26.4 85 0.0018 20.4 2.9 24 56-79 52-75 (103)
186 PF03652 UPF0081: Uncharacteri 25.6 2E+02 0.0044 20.1 4.9 44 31-74 4-60 (135)
187 PF14360 PAP2_C: PAP2 superfam 25.5 30 0.00064 21.7 0.5 9 66-74 3-11 (74)
188 PRK14176 bifunctional 5,10-met 25.4 38 0.00083 27.2 1.2 68 15-92 167-237 (287)
189 PF05582 Peptidase_U57: YabG p 25.0 50 0.0011 26.6 1.8 23 54-76 143-166 (287)
190 PRK14167 bifunctional 5,10-met 25.0 43 0.00094 27.0 1.5 80 3-92 144-234 (297)
191 PF01012 ETF: Electron transfe 24.6 63 0.0014 22.9 2.2 22 56-77 81-102 (164)
192 PF01784 NIF3: NIF3 (NGG1p int 24.5 1.2E+02 0.0027 23.2 3.9 29 39-74 172-200 (241)
193 COG0757 AroQ 3-dehydroquinate 24.3 68 0.0015 23.1 2.1 57 39-95 2-79 (146)
194 TIGR02432 lysidine_TilS_N tRNA 24.2 87 0.0019 22.6 2.9 21 56-76 90-110 (189)
195 PF00582 Usp: Universal stress 24.2 1E+02 0.0022 19.8 3.0 23 55-77 92-114 (140)
196 TIGR00696 wecB_tagA_cpsF bacte 24.2 27 0.00058 25.8 0.1 38 34-73 71-108 (177)
197 TIGR00320 dfx_rbo desulfoferro 23.9 2.6E+02 0.0056 19.5 7.2 58 74-137 48-105 (125)
198 cd01714 ETF_beta The electron 23.8 1.9E+02 0.0042 21.5 4.7 42 35-76 75-119 (202)
199 TIGR02707 butyr_kinase butyrat 23.5 1E+02 0.0022 25.3 3.4 21 85-116 2-22 (351)
200 TIGR00035 asp_race aspartate r 23.3 76 0.0016 24.0 2.5 19 63-81 185-203 (229)
201 PRK10116 universal stress prot 22.8 98 0.0021 20.8 2.8 23 55-77 92-114 (142)
202 KOG0807 Carbon-nitrogen hydrol 22.5 3.8E+02 0.0082 21.4 6.1 65 3-78 39-103 (295)
203 COG3426 Butyrate kinase [Energ 22.2 52 0.0011 26.8 1.4 11 85-95 5-15 (358)
204 COG1200 RecG RecG-like helicas 22.1 1.2E+02 0.0027 27.3 3.8 77 34-116 504-591 (677)
205 PLN02516 methylenetetrahydrofo 22.0 59 0.0013 26.3 1.7 68 15-93 170-241 (299)
206 PLN00416 carbonate dehydratase 21.3 52 0.0011 26.0 1.2 13 66-78 140-152 (258)
207 COG1168 MalY Bifunctional PLP- 21.3 47 0.001 27.8 1.0 16 64-79 199-214 (388)
208 cd01993 Alpha_ANH_like_II This 21.3 1.1E+02 0.0024 21.7 2.9 21 56-76 97-117 (185)
209 COG0037 MesJ tRNA(Ile)-lysidin 21.2 98 0.0021 24.0 2.8 22 56-77 111-132 (298)
210 PF07355 GRDB: Glycine/sarcosi 21.2 1E+02 0.0022 25.6 2.9 20 55-74 70-89 (349)
211 PRK03692 putative UDP-N-acetyl 21.1 1.4E+02 0.003 23.2 3.6 37 37-74 130-166 (243)
212 COG0469 PykF Pyruvate kinase [ 20.8 5.6E+02 0.012 22.2 8.0 95 38-134 34-149 (477)
213 PF02579 Nitro_FeMo-Co: Dinitr 20.8 1.1E+02 0.0023 19.2 2.5 25 54-78 42-66 (94)
214 cd01079 NAD_bind_m-THF_DH NAD 20.3 85 0.0018 23.8 2.1 76 14-92 64-157 (197)
215 cd03171 SORL_Dfx_classI Supero 20.2 2.5E+02 0.0053 17.8 7.2 57 74-136 3-59 (78)
No 1
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=100.00 E-value=7.3e-32 Score=200.51 Aligned_cols=136 Identities=66% Similarity=1.176 Sum_probs=121.1
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEEE
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYK 81 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~~ 81 (147)
+++++|++++.++++|+||||....+|....++++|.+|+++||++..++...+.+..++++.++|+++|||||.|+...
T Consensus 43 ~~~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~g~~i~l~HG~~~~~~~~~~~~~~~~~~~~~dvii~GHTH~p~~~~ 122 (178)
T cd07394 43 ETYDYLKTIAPDVHIVRGDFDENLNYPETKVITVGQFKIGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKFEAFE 122 (178)
T ss_pred HHHHHHHhhCCceEEEECCCCccccCCCcEEEEECCEEEEEEECCcCCCCCCHHHHHHHHHhcCCCEEEECCCCcceEEE
Confidence 57788888765699999999987789999999999999999999988776667778888888899999999999999988
Q ss_pred ECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEEEEEEEEecCCeEeeeEEEE
Q 032130 82 HEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 137 (147)
Q Consensus 82 ~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (147)
.+++++|||||++.|+.++++.+.++|++++++++.+.++++.+.++++|+++++|
T Consensus 123 ~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (178)
T cd07394 123 HEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVVTYVYQLIDGEVKVEKIEY 178 (178)
T ss_pred ECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCeEEEEEEEEECCcEEEEEecC
Confidence 99999999999998865545566789999999999999999999999999999875
No 2
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-27 Score=168.83 Aligned_cols=139 Identities=67% Similarity=1.165 Sum_probs=130.0
Q ss_pred CcHhHHHHhhCCCeEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEE
Q 032130 1 MEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAY 80 (147)
Q Consensus 1 ~e~l~~l~~~~~~~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~ 80 (147)
+|++++|+.++++++.|+|.+|....+|....+..+..||.+|||+..-||++++.+..++++.++||++.||||....+
T Consensus 43 ~e~~dylk~l~~dvhiVrGeFD~~~~yP~~kvvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldvDILl~G~Th~f~Ay 122 (183)
T KOG3325|consen 43 KESYDYLKTLSSDVHIVRGEFDENLKYPENKVVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDVDILLTGHTHKFEAY 122 (183)
T ss_pred HHHHHHHHhhCCCcEEEecccCccccCCccceEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCCcEEEeCCceeEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCEEEEcCCCCCCCCCCCCCC-CCCeEEEEEEeCCEEEEEEEEecCCeEeeeEEEEee
Q 032130 81 KHEGGVVINPGSATGAYSSFTFD-VNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 139 (147)
Q Consensus 81 ~~~~~~~iNpGS~g~p~~~~~~~-~~~~y~il~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 139 (147)
+.+++.+|||||++..+..-+.+ ..|||+++++....+...+|++-+++++++++.|+|
T Consensus 123 e~eg~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~~~v~YvY~lidgeVkVdki~ykK 182 (183)
T KOG3325|consen 123 EHEGKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGSTVVTYVYRLIDGEVKVDKIEYKK 182 (183)
T ss_pred EeCCcEEeCCCcccCCCcccccCCCCCceEEEEecCCEEEEEEeeeeCCcEEEEEEEecC
Confidence 99999999999999887443434 679999999999999899999999999999999987
No 3
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.95 E-value=8.9e-27 Score=172.18 Aligned_cols=120 Identities=34% Similarity=0.498 Sum_probs=104.9
Q ss_pred HhHHHHh-hCCCeEEEeCCCCCCC---CCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCee
Q 032130 3 VHDYLKS-LCPDLHVTRGEYDEDS---RYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 3 ~l~~l~~-~~~~~~~V~GN~D~~~---~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
.+.++.. +..++++|+||||... .+|....++++|+||+++||+.+.+..+...+..++++.++|++|+||||.|.
T Consensus 43 ~~~~l~~~~~~~i~~V~GN~D~~~~~~~~p~~~~~~~~g~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH~p~ 122 (172)
T COG0622 43 TLDALEGGLAAKLIAVRGNCDGEVDQEELPEELVLEVGGVKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTHKPV 122 (172)
T ss_pred chHHhhcccccceEEEEccCCCccccccCChhHeEEECCEEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCCccc
Confidence 4566666 4567999999999976 89999999999999999999998877888899999999999999999999999
Q ss_pred EEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEEEEEEEEec
Q 032130 79 AYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELI 126 (147)
Q Consensus 79 ~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~~v~~~~~~ 126 (147)
..+.+++++|||||++.|+ .. .+++|++++.++.++.+..+...
T Consensus 123 ~~~~~~i~~vNPGS~s~pr---~~-~~~sy~il~~~~~~~~~~~~~~~ 166 (172)
T COG0622 123 AEKVGGILLVNPGSVSGPR---GG-NPASYAILDVDNLEVEVLFLERD 166 (172)
T ss_pred EEEECCEEEEcCCCcCCCC---CC-CCcEEEEEEcCCCEEEEEEeecc
Confidence 9999999999999999984 22 45699999999888877666554
No 4
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.92 E-value=2.3e-24 Score=156.63 Aligned_cols=114 Identities=34% Similarity=0.560 Sum_probs=97.4
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCC-CCCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEE
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDED-SRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAY 80 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~-~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~ 80 (147)
++++.+++++.++++|+||||.+ ..+|....++++|.+|+++||++..+..+.+.+..+++..++|+++|||||.+...
T Consensus 42 ~~~~~l~~~~~~~~~V~GN~D~~~~~~~~~~~~~~~g~~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~ 121 (158)
T TIGR00040 42 FVLKEFEDLAAKVIAVRGNNDGERDELPEEEIFEAEGIDFGLVHGDLVYPRGDLLVLEYLAKELGVDVLIFGHTHIPVAE 121 (158)
T ss_pred HHHHHHHHhCCceEEEccCCCchhhhCCcceEEEECCEEEEEEeCcccccCCCHHHHHHHHhccCCCEEEECCCCCCccE
Confidence 46778888876799999999975 57899999999999999999997666666667777777789999999999999988
Q ss_pred EECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEEE
Q 032130 81 KHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVV 119 (147)
Q Consensus 81 ~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~~ 119 (147)
..++++++||||++.|+ . ...++|++++++++.++
T Consensus 122 ~~~~~~~iNpGs~~~~~---~-~~~~~~~il~~~~~~~~ 156 (158)
T TIGR00040 122 ELRGILLINPGSLTGPR---N-GNTPSYAILDVDKDKVT 156 (158)
T ss_pred EECCEEEEECCcccccc---C-CCCCeEEEEEecCCeEE
Confidence 89999999999999973 2 23689999999887765
No 5
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.90 E-value=6.6e-23 Score=147.95 Aligned_cols=105 Identities=28% Similarity=0.405 Sum_probs=87.7
Q ss_pred CCeEEEeCCCCCCC---CCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEEEECCEEEE
Q 032130 12 PDLHVTRGEYDEDS---RYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVI 88 (147)
Q Consensus 12 ~~~~~V~GN~D~~~---~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~~~~~~~~i 88 (147)
.++++|+||||... .+|....++++|.+|+++||++.......+. ..+++..++|++++||||.|.....++++++
T Consensus 47 ~~~~~V~GNhD~~~~~~~~p~~~~~~~~g~~i~v~Hg~~~~~~~~~~~-~~~~~~~~~d~vi~GHtH~~~~~~~~~~~~i 125 (155)
T cd00841 47 APVIAVRGNCDGEVDFPILPEEAVLEIGGKRIFLTHGHLYGVKNGLDR-LYLAKEGGADVVLYGHTHIPVIEKIGGVLLL 125 (155)
T ss_pred CcEEEEeCCCCCcCCcccCCceEEEEECCEEEEEECCcccccccchhh-hhhhhhcCCCEEEECcccCCccEEECCEEEE
Confidence 46899999999875 7899999999999999999998765443333 4556677899999999999998888999999
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEEeCCEEEEEE
Q 032130 89 NPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYV 122 (147)
Q Consensus 89 NpGS~g~p~~~~~~~~~~~y~il~~~~~~~~v~~ 122 (147)
||||++.|+ . .++++|+++++++ ++++++
T Consensus 126 npGs~~~~~---~-~~~~~~~i~~~~~-~~~~~~ 154 (155)
T cd00841 126 NPGSLSLPR---G-GGPPTYAILEIDD-KGEVEI 154 (155)
T ss_pred eCCCccCcC---C-CCCCeEEEEEecC-CCcEEE
Confidence 999999983 2 5689999999987 666654
No 6
>PRK09453 phosphodiesterase; Provisional
Probab=99.89 E-value=2.3e-22 Score=149.41 Aligned_cols=114 Identities=31% Similarity=0.434 Sum_probs=89.0
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCCC-----CCCc---eEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECC
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDEDS-----RYPE---TKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 73 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~~-----~lP~---~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GH 73 (147)
++++.|++++.++++|+||||... .+|. ...++++|.+|+++||++..+ + .+++..++|++||||
T Consensus 54 ~~~~~l~~~~~~v~~V~GNhD~~~~~~~~~~~~~~~~~~~~l~g~~i~l~HG~~~~~----~---~~~~~~~~d~vi~GH 126 (182)
T PRK09453 54 KVAELLNAYADKIIAVRGNCDSEVDQMLLHFPIMAPYQQVLLEGKRLFLTHGHLYGP----E---NLPALHDGDVLVYGH 126 (182)
T ss_pred HHHHHHHhcCCceEEEccCCcchhhhhccCCcccCceEEEEECCeEEEEECCCCCCh----h---hcccccCCCEEEECC
Confidence 356778877667999999999753 2343 355788999999999987642 1 123456799999999
Q ss_pred ccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEEEEEEEEecCCeE
Q 032130 74 THQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEV 130 (147)
Q Consensus 74 tH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~~v~~~~~~~~~~ 130 (147)
||.|.....++++++||||+|.|+ +++.++|++++++ .++++.+.++++
T Consensus 127 tH~p~~~~~~~~~~iNpGs~~~p~----~~~~~s~~il~~~----~~~~~~~~~~~~ 175 (182)
T PRK09453 127 THIPVAEKQGGIILFNPGSVSLPK----GGYPASYGILDDN----VLSVIDLEGGEV 175 (182)
T ss_pred CCCCcceEECCEEEEECCCccccC----CCCCCeEEEEECC----cEEEEECCCCeE
Confidence 999999889999999999999983 4567899999973 347778877663
No 7
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.79 E-value=2.4e-18 Score=123.10 Aligned_cols=108 Identities=31% Similarity=0.470 Sum_probs=88.1
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCCC--------CCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECC
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDEDS--------RYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 73 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~~--------~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GH 73 (147)
++++.+++. ++++|.||||.+. .++....++.++.+++++||++.......+.+...+...+++++++||
T Consensus 40 ~~~~~~~~~--~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH 117 (156)
T PF12850_consen 40 EVLELLRDI--PVYVVRGNHDNWAFPNENDEEYLLDALRLTIDGFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGH 117 (156)
T ss_dssp HHHHHHHHH--EEEEE--CCHSTHHHSEECTCSSHSEEEEEETTEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESS
T ss_pred HHHHHHhcC--CEEEEeCCcccccchhhhhccccccceeeeecCCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCC
Confidence 567888887 6999999999752 256677889999999999999987766777777777789999999999
Q ss_pred ccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeC
Q 032130 74 THQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDG 115 (147)
Q Consensus 74 tH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~ 115 (147)
+|.+.....++..++||||++.+. ...+.+|+++++++
T Consensus 118 ~H~~~~~~~~~~~~~~~Gs~~~~~----~~~~~~~~i~~~~~ 155 (156)
T PF12850_consen 118 THRPQVFKIGGIHVINPGSIGGPR----HGDQSGYAILDIED 155 (156)
T ss_dssp SSSEEEEEETTEEEEEE-GSSS-S----SSSSEEEEEEEETT
T ss_pred cccceEEEECCEEEEECCcCCCCC----CCCCCEEEEEEEec
Confidence 999999889999999999999973 22389999999875
No 8
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.52 E-value=6.7e-14 Score=99.04 Aligned_cols=81 Identities=21% Similarity=0.161 Sum_probs=62.0
Q ss_pred HhHHHHhhCCC-eEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCC--------CCHHHHHHHHhhCCCCEEEECC
Q 032130 3 VHDYLKSLCPD-LHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPW--------GDLDSLAMLQRQLDVDILVTGH 73 (147)
Q Consensus 3 ~l~~l~~~~~~-~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~--------~~~~~l~~~~~~~~~diii~GH 73 (147)
++++++++..+ +++|+||||.+.. .++.+|+++||++..+. ...+.+.+++++.++++++|||
T Consensus 41 ~~~~l~~~~~~~~~~v~GNHD~~~~--------~~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH 112 (135)
T cd07379 41 FLDWLKSLPHPHKIVIAGNHDLTLD--------PEDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGH 112 (135)
T ss_pred HHHHHHhCCCCeEEEEECCCCCcCC--------CCCCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcC
Confidence 45666666433 5789999997533 57889999999987543 1235677788888999999999
Q ss_pred ccCee-EE----EECCEEEEcCC
Q 032130 74 THQFK-AY----KHEGGVVINPG 91 (147)
Q Consensus 74 tH~p~-~~----~~~~~~~iNpG 91 (147)
+|.+. .. ..+++++|||+
T Consensus 113 ~H~~~~~~~~~~~~~~t~~in~~ 135 (135)
T cd07379 113 IHEGYGAERVLDTDGETLFVNAS 135 (135)
T ss_pred cCCcCceeEecccCCCEEEEeCC
Confidence 99997 44 45899999996
No 9
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.45 E-value=6e-13 Score=100.39 Aligned_cols=83 Identities=24% Similarity=0.258 Sum_probs=64.1
Q ss_pred CCCeEEEeCCCCCCC-----------CCCceE-EEEECCEEEEEEcCCCCCCCC--------------------------
Q 032130 11 CPDLHVTRGEYDEDS-----------RYPETK-TLTIGQFKLGICHGHQVIPWG-------------------------- 52 (147)
Q Consensus 11 ~~~~~~V~GN~D~~~-----------~lP~~~-~~~~~g~~i~~~Hg~~~~~~~-------------------------- 52 (147)
+.++++|.||||... .++... .++++|.+++++||+.+++..
T Consensus 69 ~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~HG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (217)
T cd07398 69 GTRVYYVPGNHDFLLGDFFAEELGLILLPDPLVHLELDGKRILLEHGDQFDTDDRAYQLLRRLGRNPYDQLLFLNRPLNR 148 (217)
T ss_pred CCeEEEECCCchHHHHhHHHHHcCCEEeccceEEEeeCCeEEEEECCCcCchhHHHHHHHHHHhCcHHHHHHHhcchHHH
Confidence 457999999999874 123344 789999999999999975421
Q ss_pred -----------C-----------------HHHHHHHHhhCCCCEEEECCccCeeEEEECCEEEEcCCCC
Q 032130 53 -----------D-----------------LDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSA 93 (147)
Q Consensus 53 -----------~-----------------~~~l~~~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~ 93 (147)
. .+.+.+++++.+++++|+||+|.+.....+++.++|+||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~n~G~W 217 (217)
T cd07398 149 RRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHELDGKLYINLGDW 217 (217)
T ss_pred HHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEEECCEEEEECCCC
Confidence 0 0112334566899999999999999888899999999996
No 10
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.44 E-value=2.6e-12 Score=99.31 Aligned_cols=106 Identities=20% Similarity=0.201 Sum_probs=74.0
Q ss_pred HHHHhhCCCeEEEeCCCCCCC-----------CCCceEEEEECCEEEEEEcCCCCCCCC---------------------
Q 032130 5 DYLKSLCPDLHVTRGEYDEDS-----------RYPETKTLTIGQFKLGICHGHQVIPWG--------------------- 52 (147)
Q Consensus 5 ~~l~~~~~~~~~V~GN~D~~~-----------~lP~~~~~~~~g~~i~~~Hg~~~~~~~--------------------- 52 (147)
+.|.+.+.++++|.||||... .+|....++++|.+++++||+.+....
T Consensus 64 ~~l~~~g~~v~~v~GNHD~~~~~~~~~~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~ 143 (241)
T PRK05340 64 KALSDSGVPCYFMHGNRDFLLGKRFAKAAGMTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRNPWLQWLFLA 143 (241)
T ss_pred HHHHHcCCeEEEEeCCCchhhhHHHHHhCCCEEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhCHHHHHHHHh
Confidence 344444357999999999752 357777789999999999999862100
Q ss_pred -------------------------------CHHHHHHHHhhCCCCEEEECCccCeeEEEEC-C---EEEEcCCCCCCCC
Q 032130 53 -------------------------------DLDSLAMLQRQLDVDILVTGHTHQFKAYKHE-G---GVVINPGSATGAY 97 (147)
Q Consensus 53 -------------------------------~~~~l~~~~~~~~~diii~GHtH~p~~~~~~-~---~~~iNpGS~g~p~ 97 (147)
..+.+.+.+++++++++|+||||+|.....+ + ..++|.|++..
T Consensus 144 ~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~~lgdw~~-- 221 (241)
T PRK05340 144 LPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRIVLGDWHE-- 221 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEEEeCCCCC--
Confidence 0123456667789999999999999755432 2 36899999964
Q ss_pred CCCCCCCCCeEEEEEEeCCEEEEE
Q 032130 98 SSFTFDVNPSFVLMDIDGLRVVVY 121 (147)
Q Consensus 98 ~~~~~~~~~~y~il~~~~~~~~v~ 121 (147)
..+|+.++ ++++...
T Consensus 222 -------~~~~~~~~--~~~~~~~ 236 (241)
T PRK05340 222 -------QGSVLKVD--ADGVELI 236 (241)
T ss_pred -------CCeEEEEE--CCceEEE
Confidence 26776655 5555443
No 11
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.43 E-value=1.9e-12 Score=99.56 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=72.2
Q ss_pred hHHHHhhCCCeEEEeCCCCCCC-----------CCCceEEEEECCEEEEEEcCCCCCCCC--------------------
Q 032130 4 HDYLKSLCPDLHVTRGEYDEDS-----------RYPETKTLTIGQFKLGICHGHQVIPWG-------------------- 52 (147)
Q Consensus 4 l~~l~~~~~~~~~V~GN~D~~~-----------~lP~~~~~~~~g~~i~~~Hg~~~~~~~-------------------- 52 (147)
++.|.+.+.++++|.||||... -+|....++++|.+++++||+.+....
T Consensus 61 l~~L~~~~~~v~~v~GNHD~~~~~~~~~~~gi~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~ 140 (231)
T TIGR01854 61 IRQVSDQGVPCYFMHGNRDFLIGKRFAREAGMTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFL 140 (231)
T ss_pred HHHHHHCCCeEEEEcCCCchhhhHHHHHHCCCEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHH
Confidence 3444444457999999999753 346667789999999999998863100
Q ss_pred --------------------------------CHHHHHHHHhhCCCCEEEECCccCeeEEEEC----CEEEEcCCCCCCC
Q 032130 53 --------------------------------DLDSLAMLQRQLDVDILVTGHTHQFKAYKHE----GGVVINPGSATGA 96 (147)
Q Consensus 53 --------------------------------~~~~l~~~~~~~~~diii~GHtH~p~~~~~~----~~~~iNpGS~g~p 96 (147)
..+.+.++++..++|++||||||+|.+...+ +..++|.|++..
T Consensus 141 ~l~~~~r~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW~~- 219 (231)
T TIGR01854 141 HLPLAVRVKLARKIRAESRADKQMKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDWYR- 219 (231)
T ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCCcc-
Confidence 0123345566679999999999999877654 678999999974
Q ss_pred CCCCCCCCCCeEEEEE
Q 032130 97 YSSFTFDVNPSFVLMD 112 (147)
Q Consensus 97 ~~~~~~~~~~~y~il~ 112 (147)
..+|.+++
T Consensus 220 --------~~~~~~~~ 227 (231)
T TIGR01854 220 --------QGSILRVD 227 (231)
T ss_pred --------CCeEEEEc
Confidence 25676655
No 12
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.40 E-value=1.6e-12 Score=99.01 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=59.5
Q ss_pred EEEEEcCCCCCCC---------CCHHHHHHHHhhCCCCEEEECCccCe-eEEEECCEEEEcCCCCCCCCCCCCCCCCCeE
Q 032130 39 KLGICHGHQVIPW---------GDLDSLAMLQRQLDVDILVTGHTHQF-KAYKHEGGVVINPGSATGAYSSFTFDVNPSF 108 (147)
Q Consensus 39 ~i~~~Hg~~~~~~---------~~~~~l~~~~~~~~~diii~GHtH~p-~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y 108 (147)
+|+++|.+|.... -.+..++++.++.++.+.+|||.|.. .+...+++++||||+++. ..|
T Consensus 140 ~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG~TivVNPG~~~~----------g~y 209 (226)
T COG2129 140 NILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIGNTIVVNPGPLGE----------GRY 209 (226)
T ss_pred eEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccccccCCeEEECCCCccC----------ceE
Confidence 3999999886432 13467889999999999999999984 456678999999999775 579
Q ss_pred EEEEEeCCEEEEEEE
Q 032130 109 VLMDIDGLRVVVYVY 123 (147)
Q Consensus 109 ~il~~~~~~~~v~~~ 123 (147)
|++++++..++.+.+
T Consensus 210 A~i~l~~~~Vk~~~~ 224 (226)
T COG2129 210 ALIELEKEVVKLEQF 224 (226)
T ss_pred EEEEecCcEEEEEEe
Confidence 999998876655443
No 13
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.40 E-value=7.7e-12 Score=96.19 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=56.7
Q ss_pred EEEEEEcCCCCCC---CCCHHHHHHHHhhCCCCEEEECCccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEe
Q 032130 38 FKLGICHGHQVIP---WGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDID 114 (147)
Q Consensus 38 ~~i~~~Hg~~~~~---~~~~~~l~~~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~ 114 (147)
..|+++|.+|+.. ....+.++++.++.++.++||||.| ....+.+++++||||++.. ..|++++++
T Consensus 149 ~~VLv~H~PP~g~g~~h~GS~alr~~I~~~~P~l~i~GHih-~~~~~~g~t~vvNpg~~~~----------g~~a~i~~~ 217 (224)
T cd07388 149 RKVFLFHTPPYHKGLNEQGSHEVAHLIKTHNPLVVLVGGKG-QKHELLGASWVVVPGDLSE----------GRYALLDLR 217 (224)
T ss_pred CeEEEECCCCCCCCCCccCHHHHHHHHHHhCCCEEEEcCCc-eeEEEeCCEEEECCCcccC----------CcEEEEEec
Confidence 4688999988754 2356788999999999999999999 4446789999999999663 369999997
Q ss_pred CCEE
Q 032130 115 GLRV 118 (147)
Q Consensus 115 ~~~~ 118 (147)
+.++
T Consensus 218 ~~~v 221 (224)
T cd07388 218 ARKL 221 (224)
T ss_pred Ccce
Confidence 6554
No 14
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.39 E-value=1.7e-12 Score=92.26 Aligned_cols=72 Identities=28% Similarity=0.362 Sum_probs=58.1
Q ss_pred HHHHhhCC---CeEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCC-------HHHHHHHHhhCCCCEEEECCc
Q 032130 5 DYLKSLCP---DLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGD-------LDSLAMLQRQLDVDILVTGHT 74 (147)
Q Consensus 5 ~~l~~~~~---~~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~-------~~~l~~~~~~~~~diii~GHt 74 (147)
+.++++.. ++++|+||||. |+++|+++..+... .+.+.+++++.++++++|||+
T Consensus 59 ~~~~~l~~~~~~~~~v~GNHD~----------------iv~~Hhp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~GH~ 122 (144)
T cd07400 59 EFLDALPAPLEPVLVVPGNHDV----------------IVVLHHPLVPPPGSGRERLLDAGDALKLLAEAGVDLVLHGHK 122 (144)
T ss_pred HHHHHccccCCcEEEeCCCCeE----------------EEEecCCCCCCCccccccCCCHHHHHHHHHHcCCCEEEECCC
Confidence 44555554 79999999996 99999988754322 245788888899999999999
Q ss_pred cCeeEEE----ECCEEEEcCCC
Q 032130 75 HQFKAYK----HEGGVVINPGS 92 (147)
Q Consensus 75 H~p~~~~----~~~~~~iNpGS 92 (147)
|.+.... .++..++|+||
T Consensus 123 H~~~~~~~~~~~~~~~~~~aGs 144 (144)
T cd07400 123 HVPYVGNISNAGGGLVVIGAGT 144 (144)
T ss_pred CCcCeeeccCCCCCEEEEecCC
Confidence 9998877 67889999998
No 15
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.37 E-value=2.3e-12 Score=98.97 Aligned_cols=93 Identities=23% Similarity=0.201 Sum_probs=72.0
Q ss_pred HhHHHHhhC---CCeEEEeCCCCCCC------------CCCceEEEEECCEEEEEEcCCCCCCCC---------------
Q 032130 3 VHDYLKSLC---PDLHVTRGEYDEDS------------RYPETKTLTIGQFKLGICHGHQVIPWG--------------- 52 (147)
Q Consensus 3 ~l~~l~~~~---~~~~~V~GN~D~~~------------~lP~~~~~~~~g~~i~~~Hg~~~~~~~--------------- 52 (147)
+.+.|+.++ .+++++.||||+.+ -+|+...+.+.|++++++||+.+.+..
T Consensus 56 V~~~l~~~a~~G~~v~~i~GN~Dfll~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~~~ 135 (237)
T COG2908 56 VAQKLLRLARKGTRVYYIHGNHDFLLGKRFAQEAGGMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWAWL 135 (237)
T ss_pred HHHHHHHHHhcCCeEEEecCchHHHHHHHHHhhcCceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccHHH
Confidence 344444443 67999999999652 568999999999999999999874320
Q ss_pred ----------------------C-----------------HHHHHHHHhhCCCCEEEECCccCeeEEEECCEEEEcCCCC
Q 032130 53 ----------------------D-----------------LDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSA 93 (147)
Q Consensus 53 ----------------------~-----------------~~~l~~~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~ 93 (147)
+ ++.+...++..++|.+||||||+|.+...++..+||.|++
T Consensus 136 ~~lflnl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi~lGdW 215 (237)
T COG2908 136 QLLFLNLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYINLGDW 215 (237)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEEecCcc
Confidence 0 0122334566899999999999999999999999999999
Q ss_pred CC
Q 032130 94 TG 95 (147)
Q Consensus 94 g~ 95 (147)
-.
T Consensus 216 ~~ 217 (237)
T COG2908 216 VS 217 (237)
T ss_pred hh
Confidence 83
No 16
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.34 E-value=6.6e-12 Score=88.67 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=57.4
Q ss_pred HhHHHHhh-CCCeEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCC-------CCHHHHHHHHhhCCCCEEEECCc
Q 032130 3 VHDYLKSL-CPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPW-------GDLDSLAMLQRQLDVDILVTGHT 74 (147)
Q Consensus 3 ~l~~l~~~-~~~~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~-------~~~~~l~~~~~~~~~diii~GHt 74 (147)
+++.+.++ +.++++|+|||| .+|+++|+++..+. .+.+.+.+++++.+++++++||+
T Consensus 36 ~~~~~~~~~~~~~~~V~GN~D---------------~~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~~~~~~~vl~GH~ 100 (129)
T cd07403 36 YLEYLVTMLNVPVYYVHGNHD---------------VDILLTHAPPAGIGDGEDFAHRGFEAFLDFIDRFRPKLFIHGHT 100 (129)
T ss_pred HHHHHHHHcCCCEEEEeCCCc---------------cCEEEECCCCCcCcCcccccccCHHHHHHHHHHHCCcEEEEcCc
Confidence 34556654 335899999999 68999999886443 24556777777888999999999
Q ss_pred cCeeEEE-----ECCEEEEcCC
Q 032130 75 HQFKAYK-----HEGGVVINPG 91 (147)
Q Consensus 75 H~p~~~~-----~~~~~~iNpG 91 (147)
|.+.... .+++.++|++
T Consensus 101 H~~~~~~~~~~~~~~t~~~n~~ 122 (129)
T cd07403 101 HLNYGYQLRIRRVGDTTVINAY 122 (129)
T ss_pred CCCcCccccccccCCEEEEeCC
Confidence 9987655 6889999985
No 17
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.32 E-value=7.2e-12 Score=94.82 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=63.5
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCCC---------------------------------------CCCceEEEEECCEEEEE
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDEDS---------------------------------------RYPETKTLTIGQFKLGI 42 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~~---------------------------------------~lP~~~~~~~~g~~i~~ 42 (147)
|+++.|++ .++.+|+||||... .+|....+..++.++++
T Consensus 47 ~~~~~l~~--~~~~~v~GNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~ 124 (207)
T cd07424 47 ACLELLLE--PWFHAVRGNHEQMAIDALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGI 124 (207)
T ss_pred HHHHHHhc--CCEEEeECCChHHHHhHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEE
Confidence 56777776 36899999999541 45666666777889999
Q ss_pred EcCCCCCCCC-C--------HH----------HHHHH-Hhh-CCCCEEEECCccCeeEEEECCEEEEcCCCCCC
Q 032130 43 CHGHQVIPWG-D--------LD----------SLAML-QRQ-LDVDILVTGHTHQFKAYKHEGGVVINPGSATG 95 (147)
Q Consensus 43 ~Hg~~~~~~~-~--------~~----------~l~~~-~~~-~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~ 95 (147)
+||.+.+... . .+ .+... +.. .++++||+||||.+.....+++++|||||++.
T Consensus 125 vHag~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~iV~GHTh~~~~~~~~~~i~ID~Gsv~g 198 (207)
T cd07424 125 VHADYPSDDWSDGVGAVTLRPEDIEELLWSRTRIQKAQTQPIKGVDAVVHGHTPVKRPLRLGNVLYIDTGAVFD 198 (207)
T ss_pred ECCCCCcchhhhhhhccccCcccceeeeeccchhhhcCccccCCCCEEEECCCCCCcceEECCEEEEECCCCCC
Confidence 9996532210 0 00 11110 111 13589999999999988889999999999984
No 18
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.30 E-value=7.9e-12 Score=95.62 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=65.5
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCC---------------------------------------CCCCceEEEEECCEEEEE
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDED---------------------------------------SRYPETKTLTIGQFKLGI 42 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~---------------------------------------~~lP~~~~~~~~g~~i~~ 42 (147)
++++.|++ .++.+|+||||.. .++|....++.++.++++
T Consensus 61 ~~l~~l~~--~~~~~v~GNHE~~~~~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~ 138 (218)
T PRK09968 61 NVLRLLNQ--PWFISVKGNHEAMALDAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVI 138 (218)
T ss_pred HHHHHHhh--CCcEEEECchHHHHHHHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEE
Confidence 57788876 3589999999962 157888888889999999
Q ss_pred EcCCCCCCC-C---C---------HHHHHHHHh-----hCCCCEEEECCccCeeEEEECCEEEEcCCCCC
Q 032130 43 CHGHQVIPW-G---D---------LDSLAMLQR-----QLDVDILVTGHTHQFKAYKHEGGVVINPGSAT 94 (147)
Q Consensus 43 ~Hg~~~~~~-~---~---------~~~l~~~~~-----~~~~diii~GHtH~p~~~~~~~~~~iNpGS~g 94 (147)
+|+++.... . . .+.+.+... ..++++|||||||.+.....++.++|||||+-
T Consensus 139 vHAg~p~~~~~~~~~~~~~~~~w~r~~~~~~~~~~~~~~~~~~~vv~GHTh~~~~~~~~~~i~IDtGs~~ 208 (218)
T PRK09968 139 AHADYPGDEYDFGKEIAESELLWPVDRVQKSLNGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPK 208 (218)
T ss_pred EeCCCCCchhhhccccchhhceeCcHHHhhCccccccccCCCCEEEECCCCcCcceeECCEEEEECCCCC
Confidence 998852211 0 0 011221111 13578999999999998888999999999965
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.20 E-value=5.3e-11 Score=87.39 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=44.9
Q ss_pred CCEEEEEEcCCCCCCC---------CCHHHHHHHHhhCCCCEEEECCccCee-EEEECCEEEEcCC
Q 032130 36 GQFKLGICHGHQVIPW---------GDLDSLAMLQRQLDVDILVTGHTHQFK-AYKHEGGVVINPG 91 (147)
Q Consensus 36 ~g~~i~~~Hg~~~~~~---------~~~~~l~~~~~~~~~diii~GHtH~p~-~~~~~~~~~iNpG 91 (147)
...+|+++|.++..+. ...+.+.+++++.++++++|||+|.+. ....++++++|||
T Consensus 123 ~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~~~~~~~~~~n~G 188 (188)
T cd07392 123 AKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESRGVDKIGNTLVVNPG 188 (188)
T ss_pred CCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEeccccccceeeeCCeEEecCC
Confidence 3567999999986531 134678888888899999999999987 4467899999998
No 20
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.16 E-value=8.1e-11 Score=86.40 Aligned_cols=78 Identities=21% Similarity=0.135 Sum_probs=57.3
Q ss_pred hHHHHhhCCCeEEEeCCCCCCCC------------CCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEE
Q 032130 4 HDYLKSLCPDLHVTRGEYDEDSR------------YPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVT 71 (147)
Q Consensus 4 l~~l~~~~~~~~~V~GN~D~~~~------------lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~ 71 (147)
++.++++..++++|+||||.... +|....+++++.+|+++|++...... +.++|++|+
T Consensus 62 ~~~l~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~H~~~~~~~~----------~~~~d~vi~ 131 (168)
T cd07390 62 LELLSRLNGRKHLIKGNHDSSLERKLLAFLLKFESVLQAVRLKIGGRRVYLSHYPILEWNG----------LDRGSWNLH 131 (168)
T ss_pred HHHHHhCCCCeEEEeCCCCchhhhcccccccccceeeeEEEEEECCEEEEEEeCCcccCCC----------CCCCeEEEE
Confidence 44666765579999999997531 46667889999999999975432110 357899999
Q ss_pred CCccCeeEEEECCEEEEcCCC
Q 032130 72 GHTHQFKAYKHEGGVVINPGS 92 (147)
Q Consensus 72 GHtH~p~~~~~~~~~~iNpGS 92 (147)
||||.+.... .....||+|.
T Consensus 132 GHtH~~~~~~-~~~~~~n~~~ 151 (168)
T cd07390 132 GHIHSNSPDI-GPPRRINVGV 151 (168)
T ss_pred eeeCCCCCCC-CCCceEEEeE
Confidence 9999997643 1147889887
No 21
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.10 E-value=5.7e-10 Score=85.41 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=52.8
Q ss_pred CEEEEEEcCCCCCC----CCCHHHHHHHHhhCCCCEEEECCccCee-EEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEE
Q 032130 37 QFKLGICHGHQVIP----WGDLDSLAMLQRQLDVDILVTGHTHQFK-AYKHEGGVVINPGSATGAYSSFTFDVNPSFVLM 111 (147)
Q Consensus 37 g~~i~~~Hg~~~~~----~~~~~~l~~~~~~~~~diii~GHtH~p~-~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il 111 (147)
-.+|+++|-.|... ..+++.+..+.+.+++++++|||.|... ....+.+++|||||+.. ..|++|
T Consensus 174 ~r~IlLfhtpPd~~kg~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~lG~TlVVNPGsL~~----------G~yAvI 243 (255)
T PF14582_consen 174 YRKILLFHTPPDLHKGLIHVGSAAVRDLIKTYNPDIVLCGHIHESHGKESLGKTLVVNPGSLAE----------GDYAVI 243 (255)
T ss_dssp SEEEEEESS-BTBCTCTBTTSBHHHHHHHHHH--SEEEE-SSS-EE--EEETTEEEEE--BGGG----------TEEEEE
T ss_pred ccEEEEEecCCccCCCcccccHHHHHHHHHhcCCcEEEecccccchhhHHhCCEEEecCccccc----------CceeEE
Confidence 35799999887211 1356788999999999999999999876 35679999999999985 479999
Q ss_pred EEeCCEEEE
Q 032130 112 DIDGLRVVV 120 (147)
Q Consensus 112 ~~~~~~~~v 120 (147)
++.+.++..
T Consensus 244 ~l~~~~v~~ 252 (255)
T PF14582_consen 244 DLEQDKVEF 252 (255)
T ss_dssp ETTTTEEEE
T ss_pred Eeccccccc
Confidence 998887654
No 22
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.07 E-value=6.5e-09 Score=80.91 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=54.8
Q ss_pred HHHHHHHhhCCCCEEEECCccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEEEEEEEEe
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYEL 125 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~~v~~~~~ 125 (147)
+.+.++++++++++++|||+|.......++..++..|++|.++ ....+.|.+++++++++.-|+|++
T Consensus 196 ~~l~~ll~~~~V~~v~~GH~H~~~~~~~~g~~~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~~~~~ 262 (262)
T cd07395 196 KPLLDKFKKAGVKAVFSGHYHRNAGGRYGGLEMVVTSAIGAQL----GNDKSGLRIVKVTEDKIVHEYYSL 262 (262)
T ss_pred HHHHHHHHhcCceEEEECccccCCceEECCEEEEEcCceeccc----CCCCCCcEEEEECCCceeeeeeeC
Confidence 3567778889999999999999887778888888888888774 234688999999988887787764
No 23
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.06 E-value=3.2e-09 Score=81.15 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCCCC---------CCHHHHHHHHhhC-CCCEEEECCccCeeEEEECCEEEEcCCCCCCCC
Q 032130 38 FKLGICHGHQVIPW---------GDLDSLAMLQRQL-DVDILVTGHTHQFKAYKHEGGVVINPGSATGAY 97 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~---------~~~~~l~~~~~~~-~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p~ 97 (147)
..|+++|.++.... ...+.+.++++++ +++++++||+|.......+++.+++.||++.++
T Consensus 145 ~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~g~~~~~~gs~~~~~ 214 (240)
T cd07402 145 PTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSWGGIPLLTAPSTCHQF 214 (240)
T ss_pred CEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEECCEEEEEcCcceeee
Confidence 46778887765321 1235677788887 899999999999988888999999999999985
No 24
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.04 E-value=1.8e-09 Score=84.98 Aligned_cols=93 Identities=20% Similarity=0.316 Sum_probs=62.9
Q ss_pred EEEEEEcCCCCCC---C------CCHHHHHHHHhhC-CCCEEEECCccCeeEEEECCEEEEcCCCCCCCCCCCC-----C
Q 032130 38 FKLGICHGHQVIP---W------GDLDSLAMLQRQL-DVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFT-----F 102 (147)
Q Consensus 38 ~~i~~~Hg~~~~~---~------~~~~~l~~~~~~~-~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p~~~~~-----~ 102 (147)
..++++|++|... + .+.+.+.++++++ +++++++||+|.+.....+|..++..+|++..+.... .
T Consensus 158 ~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~ 237 (275)
T PRK11148 158 HTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLDWNGRRLLATPSTCVQFKPHCTNFTLD 237 (275)
T ss_pred CeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhceECCEEEEEcCCCcCCcCCCCCccccc
Confidence 3477788877532 1 1345778888886 7999999999998877788887766666664321111 1
Q ss_pred CCCCeEEEEEEe-CCEEEEEEEEecCCeE
Q 032130 103 DVNPSFVLMDID-GLRVVVYVYELIDGEV 130 (147)
Q Consensus 103 ~~~~~y~il~~~-~~~~~v~~~~~~~~~~ 130 (147)
...+.|.++++. ++.+..++.++.++++
T Consensus 238 ~~~~g~~~~~l~~~g~~~~~~~~~~~~~~ 266 (275)
T PRK11148 238 TVAPGWRELELHADGSLETEVHRLADTEF 266 (275)
T ss_pred cCCCcEEEEEEcCCCcEEEEEEEcCCCCc
Confidence 234689999995 4567777777766443
No 25
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.02 E-value=4.5e-10 Score=85.82 Aligned_cols=91 Identities=19% Similarity=0.097 Sum_probs=63.0
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCC---------------------------------------CCCCceEEEEECCEEEEE
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDED---------------------------------------SRYPETKTLTIGQFKLGI 42 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~---------------------------------------~~lP~~~~~~~~g~~i~~ 42 (147)
+++++|++. .+.+|+||||.. .++|....++.++.++++
T Consensus 63 ~vl~~l~~~--~~~~v~GNHE~~~l~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~ 140 (218)
T PRK11439 63 RCLQLLEEH--WVRAVRGNHEQMALDALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVI 140 (218)
T ss_pred HHHHHHHcC--CceEeeCchHHHHHHHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEE
Confidence 688888874 478999999932 156777777777888999
Q ss_pred EcCCCCCCCC------C-------HHHHHHHHh--h-CCCCEEEECCccCeeEEEECCEEEEcCCCCC
Q 032130 43 CHGHQVIPWG------D-------LDSLAMLQR--Q-LDVDILVTGHTHQFKAYKHEGGVVINPGSAT 94 (147)
Q Consensus 43 ~Hg~~~~~~~------~-------~~~l~~~~~--~-~~~diii~GHtH~p~~~~~~~~~~iNpGS~g 94 (147)
+|+....... . .+.+.+.+. . .+.++||+||||.+.....++++.||+||+-
T Consensus 141 vHAg~p~~~~~~~~~~~~~~~~w~r~~~~~~~~~~~~~~~~~vv~GHT~~~~~~~~~~~i~IDtGav~ 208 (218)
T PRK11439 141 AHADYPADVYEWQKDVDLHQVLWSRSRLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVF 208 (218)
T ss_pred EeCCCCCCchhhhccCCccceEEcChhhhhccccccccCCCEEEECCccCCCccccCCEEEEECCCCC
Confidence 9987422210 0 011111111 1 2567999999999988778899999999965
No 26
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.93 E-value=2.8e-08 Score=84.57 Aligned_cols=93 Identities=24% Similarity=0.317 Sum_probs=63.9
Q ss_pred HhHHHHhhC--CCeEEEeCCCCCCC-C-------------CCc--------eEEEEECCEEEEEEcCCCCCC------C-
Q 032130 3 VHDYLKSLC--PDLHVTRGEYDEDS-R-------------YPE--------TKTLTIGQFKLGICHGHQVIP------W- 51 (147)
Q Consensus 3 ~l~~l~~~~--~~~~~V~GN~D~~~-~-------------lP~--------~~~~~~~g~~i~~~Hg~~~~~------~- 51 (147)
+.++|.++. .++++++||||... . ++. ...++++|.+|+++||...+. .
T Consensus 320 l~~~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~HG~~idDl~~~i~~~ 399 (504)
T PRK04036 320 AAEYLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHNVTFVSNPALVNLHGVDVLIYHGRSIDDVISLIPGA 399 (504)
T ss_pred HHHHHHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCCeEEecCCeEEEECCEEEEEECCCCHHHHHhhcccc
Confidence 334555553 36899999999752 1 221 234788999999999987431 1
Q ss_pred --CC-HHHHHHHHhh------------------------CCCCEEEECCccCeeEEEECCEEEEcCCCCCC
Q 032130 52 --GD-LDSLAMLQRQ------------------------LDVDILVTGHTHQFKAYKHEGGVVINPGSATG 95 (147)
Q Consensus 52 --~~-~~~l~~~~~~------------------------~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~ 95 (147)
.. .+.+..+++. .-+|++++||+|.+.....+++++|||||+..
T Consensus 400 s~~~p~~~m~~~l~~rHlaPt~p~~~~~~p~~~D~lvi~~~Pdv~~~GH~H~~~~~~~~g~~~IN~gsf~~ 470 (504)
T PRK04036 400 SYEKPGKAMEELLKRRHLAPIYGGRTPIAPEKEDYLVIDEVPDIFHTGHVHINGYGKYRGVLLINSGTWQA 470 (504)
T ss_pred cccCHHHHHHHHHHhcccCCCCCCCEEeCcCCCCCEEEecCCCEEEeCCCCccceEEECCEEEEECCcccc
Confidence 11 1233333330 23589999999999988889999999999885
No 27
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=98.88 E-value=5.9e-09 Score=80.36 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=60.1
Q ss_pred cHhHHHHhhC--CCeEEEeCCCCCCC--------------------------------------CCCceEEEEECCEEEE
Q 032130 2 EVHDYLKSLC--PDLHVTRGEYDEDS--------------------------------------RYPETKTLTIGQFKLG 41 (147)
Q Consensus 2 e~l~~l~~~~--~~~~~V~GN~D~~~--------------------------------------~lP~~~~~~~~g~~i~ 41 (147)
|++++|+++. .++.+|+||||... .+|... ++++.+++
T Consensus 56 evl~~l~~l~~~~~~~~v~GNHE~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~lP~~~--~~~~~~~~ 133 (234)
T cd07423 56 EVLRLVMSMVAAGAALCVPGNHDNKLYRKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYESLPSHL--VLDEGKLV 133 (234)
T ss_pred HHHHHHHHHhhCCcEEEEECCcHHHHHHHhcCCCccccCcccchHHHHhhccHHHHHHHHHHHHhCCcEE--EeCCCcEE
Confidence 6788888762 36899999999630 345433 34556899
Q ss_pred EEcCCCCCCCCCH--HHH---------------------HHHHhh-CCCCEEEECCccCeeEEEECCEEEEcCCCCCC
Q 032130 42 ICHGHQVIPWGDL--DSL---------------------AMLQRQ-LDVDILVTGHTHQFKAYKHEGGVVINPGSATG 95 (147)
Q Consensus 42 ~~Hg~~~~~~~~~--~~l---------------------~~~~~~-~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~ 95 (147)
++||......... +.+ ..+... .+.+++||||||.+.....++.+.||+||+-.
T Consensus 134 ~vHag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~GHt~~~~~~~~~~~i~IDtGav~g 211 (234)
T cd07423 134 VAHAGIKEEMIGRDSKRVRSFALYGDTTGETDEFGLPVRRDWAKEYRGDALVVYGHTPVPEPRWLNNTINIDTGCVFG 211 (234)
T ss_pred EEeCCCChHhccccchhheeeeecccccCCcCCCCCccchhhHhhCCCCeEEEECCCCCccceEeCCEEEEECCCCCC
Confidence 9998743211000 000 011111 24579999999999888888999999999753
No 28
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.86 E-value=2.8e-08 Score=76.80 Aligned_cols=92 Identities=22% Similarity=0.244 Sum_probs=61.0
Q ss_pred hHHHHhhC--CCeEEEeCCCCCCC-CCC---------------------ceEEEEECCEEEEEEcCCCCCC------CC-
Q 032130 4 HDYLKSLC--PDLHVTRGEYDEDS-RYP---------------------ETKTLTIGQFKLGICHGHQVIP------WG- 52 (147)
Q Consensus 4 l~~l~~~~--~~~~~V~GN~D~~~-~lP---------------------~~~~~~~~g~~i~~~Hg~~~~~------~~- 52 (147)
.++|+++. .++++++||||... .+| ....++++|.+|+++||..... ..
T Consensus 72 ~~~l~~L~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~~~d~~~~~~~~~ 151 (243)
T cd07386 72 AEYLSDVPSHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFLPGNVEFVSNPALVKIHGVDVLIYHGRSIDDVVKLIPGLS 151 (243)
T ss_pred HHHHHhcccCCeEEEeCCCCCcccccCCCCCccHHHHhhcCCCceEEeCCCCEEEECCEEEEEECCCCHHHHHHhCCCCC
Confidence 34555554 46899999999852 111 1234678999999999975420 00
Q ss_pred --CHHHH-HH------------------------HHhhCCCCEEEECCccCeeEEEECCEEEEcCCCCCC
Q 032130 53 --DLDSL-AM------------------------LQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATG 95 (147)
Q Consensus 53 --~~~~l-~~------------------------~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~ 95 (147)
....+ +. +..+..++++|+||+|.+.....++++++||||+..
T Consensus 152 ~~~~~~~~~~~l~~~hl~P~~~~~~~~~~~~~~~~~~~~~p~vii~Gh~h~~~~~~~~~~~~vn~Gsf~~ 221 (243)
T cd07386 152 YDKPGKAMEELLKRRHLAPIYGGRTPIAPEPEDYLVIDEVPDILHTGHVHVYGVGVYRGVLLVNSGTWQS 221 (243)
T ss_pred cccHHHHHHHHHhhcccCCCCCCCEeeCCCCCCCEEecCCCCEEEECCCCchHhEEECCEEEEECCCCcC
Confidence 11111 11 011124589999999999988889999999999885
No 29
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=98.78 E-value=8.3e-08 Score=73.87 Aligned_cols=58 Identities=22% Similarity=0.136 Sum_probs=44.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeE-----EEECCEEEEcCCCCCCC
Q 032130 39 KLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKA-----YKHEGGVVINPGSATGA 96 (147)
Q Consensus 39 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~-----~~~~~~~~iNpGS~g~p 96 (147)
+|+++|+++.....+.+.+.+.+++.+++++++||+|.+.. ...+++.+.++.|....
T Consensus 167 ~i~~~H~p~~~~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~ 229 (232)
T cd07393 167 KIVMLHYPPANENGDDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLN 229 (232)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhcC
Confidence 79999998876555566777777788999999999998754 34788877777665543
No 30
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.75 E-value=9.3e-09 Score=77.40 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=40.9
Q ss_pred CEEEEEEcCCCCCCCCCH----HHHHHHHhhCCCCEEEECCccCeeEEEECCEEEEcCCCCCC
Q 032130 37 QFKLGICHGHQVIPWGDL----DSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATG 95 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~~~~----~~l~~~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~ 95 (147)
..+|+++|+......... +.....+...++|++++||+|.+......+..+++|||+..
T Consensus 157 ~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~ypGS~~~ 219 (223)
T cd00840 157 DFNILLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQIILGGGPPIVYPGSPEG 219 (223)
T ss_pred CcEEEEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccCeeecCCCceEEeCCCccc
Confidence 457888887654222111 11223344578999999999999877678899999999874
No 31
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.75 E-value=3.8e-08 Score=71.58 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=52.7
Q ss_pred CCeEEEeCCCCCCC---------CCCc-------eEEEEECCEEEEEEcCCCCCCC-------C--C---HHHHHHHHhh
Q 032130 12 PDLHVTRGEYDEDS---------RYPE-------TKTLTIGQFKLGICHGHQVIPW-------G--D---LDSLAMLQRQ 63 (147)
Q Consensus 12 ~~~~~V~GN~D~~~---------~lP~-------~~~~~~~g~~i~~~Hg~~~~~~-------~--~---~~~l~~~~~~ 63 (147)
.++++|+||||.+. .++. ...-++.+..|+++|..|.... . . .+.+.++++.
T Consensus 56 ~~v~~v~GNHD~~~~~~G~~~w~~~~~~~~~~~~~~~~d~~~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (166)
T cd07404 56 EPVIYVPGNHEFYVRIIGTTLWSDISLFGEAAARMRMNDFRGKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILA 135 (166)
T ss_pred ccEEEeCCCcceEEEEEeeecccccCccchHHHHhCCCCCCCCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhh
Confidence 46999999999852 2111 1111333567999999876321 0 1 1234556667
Q ss_pred CCCCEEEECCccCeeEEEECCEE-EEcC
Q 032130 64 LDVDILVTGHTHQFKAYKHEGGV-VINP 90 (147)
Q Consensus 64 ~~~diii~GHtH~p~~~~~~~~~-~iNp 90 (147)
.++++++|||+|.+.....+++. +.||
T Consensus 136 ~~v~~~i~GH~H~~~~~~~~g~~~~~np 163 (166)
T cd07404 136 DPIDLWIHGHTHFNFDYRIGGTRVLSNQ 163 (166)
T ss_pred cCCCEEEECCccccceEEECCEEEEecC
Confidence 79999999999999887788865 6777
No 32
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.75 E-value=4.2e-08 Score=66.63 Aligned_cols=68 Identities=31% Similarity=0.496 Sum_probs=52.0
Q ss_pred HHhhCCCeEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCC--------HHHHHHHHhhCCCCEEEECCccCee
Q 032130 7 LKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGD--------LDSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 7 l~~~~~~~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~--------~~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
++....+++++.|||| |+++|.++...... .+.+...+...+++++++||+|.+.
T Consensus 54 ~~~~~~~~~~~~GNHD-----------------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~ 116 (131)
T cd00838 54 LLLLGIPVYVVPGNHD-----------------ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYE 116 (131)
T ss_pred hhcCCCCEEEeCCCce-----------------EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeeccc
Confidence 4444567999999999 99999988654321 3455666677899999999999988
Q ss_pred EEE--ECCEEEEcCC
Q 032130 79 AYK--HEGGVVINPG 91 (147)
Q Consensus 79 ~~~--~~~~~~iNpG 91 (147)
... ..+..++++|
T Consensus 117 ~~~~~~~~~~~v~~g 131 (131)
T cd00838 117 RREPDGGGTLYINPG 131 (131)
T ss_pred cccCCCCceEEecCC
Confidence 765 5677888876
No 33
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=98.62 E-value=6.7e-07 Score=69.91 Aligned_cols=89 Identities=20% Similarity=0.320 Sum_probs=65.1
Q ss_pred EEEEEEcCCCCCCCC------CHHHHHHHHhhCCCCEEEECCccCeeEEEEC--CEEEEcCCCCCCCCCCCC--------
Q 032130 38 FKLGICHGHQVIPWG------DLDSLAMLQRQLDVDILVTGHTHQFKAYKHE--GGVVINPGSATGAYSSFT-------- 101 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~~------~~~~l~~~~~~~~~diii~GHtH~p~~~~~~--~~~~iNpGS~g~p~~~~~-------- 101 (147)
.+|+++|.++..... ..+.+.+++++++++++++||+|.......+ +..+|..|+.+.+.....
T Consensus 168 ~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~ 247 (277)
T cd07378 168 WKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDDGSGTSFVVSGAGSKARPSVKHIDKVPQF 247 (277)
T ss_pred eEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeeecCCCCcEEEEeCCCcccCCCCCccCccccc
Confidence 578899987753221 1245677888889999999999998776665 888999998887642221
Q ss_pred ----CCCCCeEEEEEEeCCEEEEEEEEec
Q 032130 102 ----FDVNPSFVLMDIDGLRVVVYVYELI 126 (147)
Q Consensus 102 ----~~~~~~y~il~~~~~~~~v~~~~~~ 126 (147)
......|++|++++.++.++++..+
T Consensus 248 ~~~~~~~~~Gy~~i~v~~~~l~~~~~~~~ 276 (277)
T cd07378 248 FSGFTSSGGGFAYLELTKEELTVRFYDAD 276 (277)
T ss_pred ccccccCCCCEEEEEEecCEEEEEEECCC
Confidence 1234789999999888888887654
No 34
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=98.61 E-value=7.1e-08 Score=72.29 Aligned_cols=93 Identities=18% Similarity=0.104 Sum_probs=58.4
Q ss_pred hHHHHhhCCCeEEEeCCCCCCCCCCceE---------EE----EECCEEEEEEcCCCCCC---CC---------------
Q 032130 4 HDYLKSLCPDLHVTRGEYDEDSRYPETK---------TL----TIGQFKLGICHGHQVIP---WG--------------- 52 (147)
Q Consensus 4 l~~l~~~~~~~~~V~GN~D~~~~lP~~~---------~~----~~~g~~i~~~Hg~~~~~---~~--------------- 52 (147)
++.+.+...++++++||||..-.+.... .. ......++++|.++... +.
T Consensus 69 ~~~l~~~~~p~~~~~GNHD~~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~ 148 (199)
T cd07383 69 VSPMIDRKIPWAATFGNHDGYDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCC 148 (199)
T ss_pred HHHHHHcCCCEEEECccCCCCCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCC
Confidence 3444444557899999999642221111 01 11234689999766421 10
Q ss_pred ---CHHHHHHHHhhCCCCEEEECCccCeeEEEECCEEEEcCCCCCCC
Q 032130 53 ---DLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGA 96 (147)
Q Consensus 53 ---~~~~l~~~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p 96 (147)
..+-+..+.+..++++++|||+|........+.+.+|||+.+..
T Consensus 149 ~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g~ 195 (199)
T cd07383 149 PKINSGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTGY 195 (199)
T ss_pred CcCCcHHHHHHHHcCCeEEEEeCCCCCcceecccCCEEEeCCCCCCC
Confidence 11224455567899999999999976555567778999998753
No 35
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.59 E-value=3.9e-07 Score=70.17 Aligned_cols=66 Identities=30% Similarity=0.576 Sum_probs=49.0
Q ss_pred HhHHHHhhCCCeEEEeCCCCCC---CCCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeE
Q 032130 3 VHDYLKSLCPDLHVTRGEYDED---SRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKA 79 (147)
Q Consensus 3 ~l~~l~~~~~~~~~V~GN~D~~---~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~ 79 (147)
+.++++.+..++++|+||||.. ..+|....+.+++. +++||+.. + +.+ ..++|++|+||+|.+..
T Consensus 81 ~~~~l~~~~~~v~~V~GNHD~~~~~~~~~~~~~~~lg~~--~l~HGh~~-~--~~~-------~~~~d~~I~GH~HP~i~ 148 (225)
T TIGR00024 81 IREFIEVTFRDLILIRGNHDALIPYIGLSGEESIRIGKY--LIFHGHAV-P--DEE-------DLDAKVLIFGHEHPAVK 148 (225)
T ss_pred HHHHHHhcCCcEEEECCCCCCccccCCCCccceEEECCE--EEEeCCCC-C--Ccc-------cccCCEEEECCCCceEE
Confidence 4556777777899999999974 35677777888885 99999864 2 111 23689999999997754
Q ss_pred E
Q 032130 80 Y 80 (147)
Q Consensus 80 ~ 80 (147)
.
T Consensus 149 l 149 (225)
T TIGR00024 149 L 149 (225)
T ss_pred E
Confidence 3
No 36
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.58 E-value=1.2e-06 Score=68.74 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=46.3
Q ss_pred HHHHHHHhh-CCCCEEEECCccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEE
Q 032130 55 DSLAMLQRQ-LDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 118 (147)
Q Consensus 55 ~~l~~~~~~-~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~ 118 (147)
+.+.+++++ .+++++++||+|.......+|..++..||++.. +...+.|+++.+-++++
T Consensus 205 ~~~~~ll~~~~~V~~v~~GH~H~~~~~~~~gi~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~ 264 (267)
T cd07396 205 EEVLSILRAYGCVKACISGHDHEGGYAQRHGIHFLTLEGMVET-----PPESNAFGVVIVYEDRL 264 (267)
T ss_pred HHHHHHHHhCCCEEEEEcCCcCCCCccccCCeeEEEechhhcC-----CCCCCceEEEEEeCCce
Confidence 456677776 478999999999998777889989888888863 44578899888766654
No 37
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.52 E-value=2.6e-07 Score=70.22 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=56.4
Q ss_pred cHhHHHHhhC-------CCeEEEeCCCCCCC--------------------------------------CCCceEEEEEC
Q 032130 2 EVHDYLKSLC-------PDLHVTRGEYDEDS--------------------------------------RYPETKTLTIG 36 (147)
Q Consensus 2 e~l~~l~~~~-------~~~~~V~GN~D~~~--------------------------------------~lP~~~~~~~~ 36 (147)
++++.|.++. .++++|+||||... ++|.. ...+
T Consensus 51 ~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~--~~~~ 128 (208)
T cd07425 51 EILWLLYKLEQEAAKAGGKVHFLLGNHELMNLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVI--VKVN 128 (208)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEeeCCCcHHHHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeE--EEEC
Confidence 4677776663 35899999999651 22222 3344
Q ss_pred CEEEEEEcCCCCCCCCC-------H-----HHHHHHHhhCCCCEEEECCccCeeEE--EECCE-EEEcCCCC
Q 032130 37 QFKLGICHGHQVIPWGD-------L-----DSLAMLQRQLDVDILVTGHTHQFKAY--KHEGG-VVINPGSA 93 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~~~-------~-----~~l~~~~~~~~~diii~GHtH~p~~~--~~~~~-~~iNpGS~ 93 (147)
+++++||.+...|.. . ..+.++++..+++++|+||||.+... ..+++ +.|..|..
T Consensus 129 --~~~fvHag~~~~w~r~y~~~~~~~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g~~ 198 (208)
T cd07425 129 --DTLFVHGGLGPLWYRGYSKETSDKECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVGMS 198 (208)
T ss_pred --CEEEEeCCcHHHHhhHhhhhhhhccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCCcc
Confidence 478899987432210 0 13567778889999999999998654 33444 44666653
No 38
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.52 E-value=2.6e-07 Score=67.19 Aligned_cols=88 Identities=17% Similarity=0.077 Sum_probs=57.2
Q ss_pred HhHHHHhhCCCeEEEeCCCCCCC---------CCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECC
Q 032130 3 VHDYLKSLCPDLHVTRGEYDEDS---------RYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 73 (147)
Q Consensus 3 ~l~~l~~~~~~~~~V~GN~D~~~---------~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GH 73 (147)
....++.+..+.+.|+||||..- ++.....++.+|.+|+++|-+...+.......+..-.....+++|.||
T Consensus 65 a~~IlerLnGrkhlv~GNhDk~~~~~~~~~~~svq~f~~ie~dg~~~~LsHyP~~~~~~~~~~~r~~y~~~~~~llIHGH 144 (186)
T COG4186 65 AGLILERLNGRKHLVPGNHDKCHPMYRHAYFDSVQAFQRIEWDGEDVYLSHYPRPGQDHPGMESRFDYLRLRVPLLIHGH 144 (186)
T ss_pred HHHHHHHcCCcEEEeeCCCCCCcccccchhhHHHHHHHheeECCeEEEEEeCCCCCCCCcchhhhHHHHhccCCeEEecc
Confidence 44567777778899999999863 223346789999999999976544322222222222235799999999
Q ss_pred ccCeeEEEECCEEEEcCCC
Q 032130 74 THQFKAYKHEGGVVINPGS 92 (147)
Q Consensus 74 tH~p~~~~~~~~~~iNpGS 92 (147)
.|-++.....+. ||.|.
T Consensus 145 ~H~~~~kp~p~q--idvgV 161 (186)
T COG4186 145 LHSQFPKPGPGQ--IDVGV 161 (186)
T ss_pred ccccccCCCCce--EEeee
Confidence 998665433333 45443
No 39
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.43 E-value=3.5e-07 Score=67.25 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=38.8
Q ss_pred CCCeEEEeCCCCCCCCC----CceE-EEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEEEE
Q 032130 11 CPDLHVTRGEYDEDSRY----PETK-TLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKH 82 (147)
Q Consensus 11 ~~~~~~V~GN~D~~~~l----P~~~-~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~~~ 82 (147)
..++++|+||||..... +... .-.+...+++++||+...+. .+.|++|+||+| |.+...
T Consensus 75 ~~~v~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~HG~~~~~~------------~~~~~~i~GH~H-P~~~~~ 138 (172)
T cd07391 75 DVDVILIRGNHDGGLPEILKDLNVEVVEGLLLGGFLFFHGHKPPPP------------LDAELVIIGHEH-PAIRLR 138 (172)
T ss_pred CCeEEEEcccCccchhhhhhcCcEeecCCEEECCEEEEeCCCCCCc------------CCCCEEEEccCC-CcEEEE
Confidence 34799999999986421 2211 11223457999999864221 468999999999 765443
No 40
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.37 E-value=5e-06 Score=63.27 Aligned_cols=107 Identities=13% Similarity=-0.001 Sum_probs=60.3
Q ss_pred HhHHHHhhCCCeEEEeCCCCCCCCCCc-----------eEEEEEC-CEEEEEEcCCCCCCC-------------CCHHHH
Q 032130 3 VHDYLKSLCPDLHVTRGEYDEDSRYPE-----------TKTLTIG-QFKLGICHGHQVIPW-------------GDLDSL 57 (147)
Q Consensus 3 ~l~~l~~~~~~~~~V~GN~D~~~~lP~-----------~~~~~~~-g~~i~~~Hg~~~~~~-------------~~~~~l 57 (147)
+++.|++...++.+++||||..+.+.. ...-+.. ...|+++|..+.... ...+.+
T Consensus 61 ~~~~l~~~~~p~~~~~GNHD~~~~ld~~~~~~ql~WL~~~L~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~ 140 (214)
T cd07399 61 AFARLDKAGIPYSVLAGNHDLVLALEFGPRDEVLQWANEVLKKHPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIW 140 (214)
T ss_pred HHHHHHHcCCcEEEECCCCcchhhCCCCCCHHHHHHHHHHHHHCCCCCEEEEecccccCCCCcCcccccccccccHHHHH
Confidence 344444333568999999997532211 0011222 345778887765221 112346
Q ss_pred HHHHhhC-CCCEEEECCccCeeEEEEC-----C----EEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCC
Q 032130 58 AMLQRQL-DVDILVTGHTHQFKAYKHE-----G----GVVINPGSATGAYSSFTFDVNPSFVLMDIDGL 116 (147)
Q Consensus 58 ~~~~~~~-~~diii~GHtH~p~~~~~~-----~----~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~ 116 (147)
.++++++ +++++++||.|.+...... + ..++|.-.. ..++.+.|-++.++.+
T Consensus 141 ~~ll~~~~~V~~v~~GH~H~~~~~~~~~~~~~g~~v~~~~~~~q~~-------~~~g~~~~r~~~f~~~ 202 (214)
T cd07399 141 DKLVKKNDNVFMVLSGHVHGAGRTTLVSVGDAGRTVHQMLADYQGE-------PNGGNGFLRLLEFDPD 202 (214)
T ss_pred HHHHhCCCCEEEEEccccCCCceEEEcccCCCCCEeeEEeecccCC-------CCCCcceEEEEEEecC
Confidence 6777776 7999999999998755441 1 233455111 1223566777777655
No 41
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.34 E-value=8.4e-06 Score=67.84 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=52.4
Q ss_pred CCCCEEEECCccCeeEEE----ECCEEEEcCCCCC-CCCCCCCCCCCCeEEEEEEeCCEEEEEEEEecC-CeEeeeEEEE
Q 032130 64 LDVDILVTGHTHQFKAYK----HEGGVVINPGSAT-GAYSSFTFDVNPSFVLMDIDGLRVVVYVYELID-GEVKVDKIDF 137 (147)
Q Consensus 64 ~~~diii~GHtH~p~~~~----~~~~~~iNpGS~g-~p~~~~~~~~~~~y~il~~~~~~~~v~~~~~~~-~~~~~~~~~~ 137 (147)
...|+++.||.|.+.... .++..++.|||.- ..++. ....+.+|+++++++++++++...+.. .++...+..+
T Consensus 227 ~~fDYValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e-~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i~l 305 (405)
T TIGR00583 227 DFFDLVIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTP-GEALPKHVFILNIKGRKFASKPIPLQTVRPFVMKEILL 305 (405)
T ss_pred ccCcEEEecccccccccccccCCCCceEEECCCcccccccc-cccCCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEEEh
Confidence 469999999999865432 2456899999944 33211 123568899999998888888888763 3466556555
Q ss_pred ee
Q 032130 138 KK 139 (147)
Q Consensus 138 ~~ 139 (147)
..
T Consensus 306 ~~ 307 (405)
T TIGR00583 306 DK 307 (405)
T ss_pred hh
Confidence 43
No 42
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.34 E-value=1.8e-06 Score=67.09 Aligned_cols=60 Identities=27% Similarity=0.317 Sum_probs=38.0
Q ss_pred EECCEEEEEEcCCCCCC------------------CCCHHHHHHHHh----hCCCCEEEECCccCeeEEE----------
Q 032130 34 TIGQFKLGICHGHQVIP------------------WGDLDSLAMLQR----QLDVDILVTGHTHQFKAYK---------- 81 (147)
Q Consensus 34 ~~~g~~i~~~Hg~~~~~------------------~~~~~~l~~~~~----~~~~diii~GHtH~p~~~~---------- 81 (147)
..+...|+++|+.+... +.++ .|.+.+. ...+++++|||.|.+....
T Consensus 144 ~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~-~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~~r~~~~~~ 222 (238)
T cd07397 144 PPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDP-DLALAISQIQQGRQVPLVVFGHMHHRLRRGKGLRNMIAVD 222 (238)
T ss_pred CCCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCH-HHHHHHHHHhccCCCCEEEeCCccCcccccccccceeeec
Confidence 33555899999876421 1122 3322222 2458999999999983221
Q ss_pred ECCEEEEcCCCCC
Q 032130 82 HEGGVVINPGSAT 94 (147)
Q Consensus 82 ~~~~~~iNpGS~g 94 (147)
.+++.|+|++++=
T Consensus 223 ~~gt~y~N~a~~p 235 (238)
T cd07397 223 REGTVYLNAASVP 235 (238)
T ss_pred CCCeEEEeccccc
Confidence 2789999998763
No 43
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=98.31 E-value=1.2e-05 Score=63.28 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=53.9
Q ss_pred HHHHHHHhhCCCCEEEECCccCeeEEE----------------ECCEEEEcCCCCCCCCCCCC-----------CCCCCe
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQFKAYK----------------HEGGVVINPGSATGAYSSFT-----------FDVNPS 107 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p~~~~----------------~~~~~~iNpGS~g~p~~~~~-----------~~~~~~ 107 (147)
+.+.+++++++++++++||+|...... -++..+|-.|+.|.+..... ......
T Consensus 183 ~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~~g 262 (294)
T cd00839 183 AALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESDYG 262 (294)
T ss_pred HHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccCCCCCceEEEeccCC
Confidence 345677888999999999999865322 15778899999998753211 122367
Q ss_pred EEEEEEeCC-EEEEEEEEecCCeE
Q 032130 108 FVLMDIDGL-RVVVYVYELIDGEV 130 (147)
Q Consensus 108 y~il~~~~~-~~~v~~~~~~~~~~ 130 (147)
|++|++.+. .+.+++++..++++
T Consensus 263 ~~~~~~~~~t~l~~~~~~~~~g~v 286 (294)
T cd00839 263 FGRLTVHNSTHLHFEWIRNDDGVV 286 (294)
T ss_pred EEEEEEEecCeEEEEEEECCCCeE
Confidence 889998776 78888887665543
No 44
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.26 E-value=1.2e-06 Score=60.87 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=34.0
Q ss_pred EECCEEEEEEcCCCCCCCCC----------HHHHHHHHhhCCCCEEEECCccCe
Q 032130 34 TIGQFKLGICHGHQVIPWGD----------LDSLAMLQRQLDVDILVTGHTHQF 77 (147)
Q Consensus 34 ~~~g~~i~~~Hg~~~~~~~~----------~~~l~~~~~~~~~diii~GHtH~p 77 (147)
.....+|+++|.++...... .+.+..+++..+++++++||+|.|
T Consensus 147 ~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 147 KNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 55678999999988754322 235677788899999999999975
No 45
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.12 E-value=2.4e-05 Score=61.55 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=13.2
Q ss_pred HhhCCCCEEEECCccC
Q 032130 61 QRQLDVDILVTGHTHQ 76 (147)
Q Consensus 61 ~~~~~~diii~GHtH~ 76 (147)
+.+.++|++++||||=
T Consensus 198 ~~~~~~dL~lsGHTHG 213 (271)
T PRK11340 198 MRDEPWDLMLCGHTHG 213 (271)
T ss_pred hccCCCCEEEeccccC
Confidence 3456899999999994
No 46
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=98.08 E-value=0.00011 Score=60.82 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=70.2
Q ss_pred CEEEEEEcCCCCCCC---CCH---HHHHHHHhhCCCCEEEECCccCeeEEEECCEEEEcCCCCCCCCCCCC--------C
Q 032130 37 QFKLGICHGHQVIPW---GDL---DSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFT--------F 102 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~---~~~---~~l~~~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p~~~~~--------~ 102 (147)
..+|++-|++.++.. .+. ..+..+++++++|+.++||.|.......++..+|..|+.+....... .
T Consensus 214 ~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i~~~gt~yIvSGaGs~~~~~~~~~~~~s~F~ 293 (394)
T PTZ00422 214 DYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRNMEVLTDEGTAHINCGSGGNSGRKSIMKNSKSLFY 293 (394)
T ss_pred CeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccceEEecCCCceEEEeCccccccCCCCCCCCCccee
Confidence 457888898877532 122 36788899999999999999987665667889999999776431100 0
Q ss_pred CCCCeEEEEEEeCCEEEEEEEE-ecCCeEeeeEEE
Q 032130 103 DVNPSFVLMDIDGLRVVVYVYE-LIDGEVKVDKID 136 (147)
Q Consensus 103 ~~~~~y~il~~~~~~~~v~~~~-~~~~~~~~~~~~ 136 (147)
.....|+.+++...++.+++++ ..+..+.--.+.
T Consensus 294 ~~~~GF~~~~l~~~~l~~~fid~~~GkvL~~~~~~ 328 (394)
T PTZ00422 294 SEDIGFCIHELNAEGMVTKFVSGNTGEVLYTHKQP 328 (394)
T ss_pred cCCCCEEEEEEecCEEEEEEEeCCCCcEEEEeeec
Confidence 1235699999999999999997 454444433333
No 47
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.02 E-value=5.1e-05 Score=63.80 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=59.7
Q ss_pred CCeEEEeCCCCCCC-C---------------------CCceEEEEECCEEEEEEcCCCCC------CC----CCHHHHHH
Q 032130 12 PDLHVTRGEYDEDS-R---------------------YPETKTLTIGQFKLGICHGHQVI------PW----GDLDSLAM 59 (147)
Q Consensus 12 ~~~~~V~GN~D~~~-~---------------------lP~~~~~~~~g~~i~~~Hg~~~~------~~----~~~~~l~~ 59 (147)
..+.+.+||||... . ++....++++|..+++.||--.+ |. .....+++
T Consensus 309 I~v~i~PGnhDa~r~a~PQp~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~hG~sidDii~~vP~~~~~~~~~ame~ 388 (481)
T COG1311 309 IKVFIMPGNHDAVRQALPQPHFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIYHGRSIDDIIKLVPGADYDSPLKAMEE 388 (481)
T ss_pred ceEEEecCCCCccccccCCCCcchhhcccccccceEecCCCcEEEECCEEEEEecCCCHHHHHhhCCCCCccchHHHHHH
Confidence 35788999999862 1 22335679999999999995431 11 11111111
Q ss_pred ------------------------HHhhCCCCEEEECCccCeeEEEECCEEEEcCCCCCCC
Q 032130 60 ------------------------LQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGA 96 (147)
Q Consensus 60 ------------------------~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p 96 (147)
+.-+.-+|++++||+|........++.+||.|||=..
T Consensus 389 lLk~rHlaPtygg~~p~aP~~kD~lVIeevPDv~~~Ghvh~~g~~~y~gv~~vns~T~q~q 449 (481)
T COG1311 389 LLKRRHLAPTYGGTLPIAPETKDYLVIEEVPDVFHTGHVHKFGTGVYEGVNLVNSGTWQEQ 449 (481)
T ss_pred HHHhcccCCCCCCccccccCCcCceeeccCCcEEEEccccccceeEEeccceEEeeeecch
Confidence 2223468999999999999888888999999998763
No 48
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.00 E-value=1.6e-05 Score=59.35 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=35.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCee
Q 032130 38 FKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
.-|+|+|.+|+++.+....+.+++++..++.+++||.|-+-
T Consensus 160 ~fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv~ 200 (230)
T COG1768 160 KFIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGVP 200 (230)
T ss_pred eEEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCCC
Confidence 45889999998877777788888989999999999999754
No 49
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.89 E-value=8.3e-05 Score=57.66 Aligned_cols=68 Identities=25% Similarity=0.351 Sum_probs=42.7
Q ss_pred HHHHHHHhhCC--CCEEEECCccCe--eEEEECCEEEEc----CCCCCCCCCCCCCCCCCeEEEEEEeCCEEEEEEEE
Q 032130 55 DSLAMLQRQLD--VDILVTGHTHQF--KAYKHEGGVVIN----PGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYE 124 (147)
Q Consensus 55 ~~l~~~~~~~~--~diii~GHtH~p--~~~~~~~~~~iN----pGS~g~p~~~~~~~~~~~y~il~~~~~~~~v~~~~ 124 (147)
......+...+ ++.+++||.|++ ......+..+.+ .++.++. .........+..+++....+.+....
T Consensus 169 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (301)
T COG1409 169 GELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSDLLVGAGPATCS--QVFRGSATAFNTLDLDGPGVRVLVLA 244 (301)
T ss_pred hhHHHHHHhcCCceEEEEeCcccccccccceeCCeeeeecccccCCccce--eecCCCccceeeeeecCCCeeEEEEe
Confidence 34455555666 999999999999 666666665554 4444432 12344456667788777766554443
No 50
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.86 E-value=0.00096 Score=52.08 Aligned_cols=36 Identities=25% Similarity=0.564 Sum_probs=30.3
Q ss_pred HHhh-CCCCEEEECCccCeeEEEECCEEEEcCCCCCC
Q 032130 60 LQRQ-LDVDILVTGHTHQFKAYKHEGGVVINPGSATG 95 (147)
Q Consensus 60 ~~~~-~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~ 95 (147)
++++ .++|+|+.||+|.......++++++.+|+-+.
T Consensus 189 la~~~~~iD~IlgGH~H~~~~~~~~~t~vv~~g~~g~ 225 (257)
T cd07406 189 LAREVPEIDLILGGHDHEYILVQVGGTPIVKSGSDFR 225 (257)
T ss_pred HHHhCCCCceEEecccceeEeeeECCEEEEeCCcCcc
Confidence 4443 47999999999998877778999999999885
No 51
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.84 E-value=0.0008 Score=52.66 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=26.2
Q ss_pred CCCCEEEECCccCeeEE---EECCEEEEcCCCCCC
Q 032130 64 LDVDILVTGHTHQFKAY---KHEGGVVINPGSATG 95 (147)
Q Consensus 64 ~~~diii~GHtH~p~~~---~~~~~~~iNpGS~g~ 95 (147)
.++|+|+.||+|..... ..++++++.+|+-+.
T Consensus 206 ~~iDlilgGH~H~~~~~~~~~~~~t~v~~~g~~~~ 240 (264)
T cd07411 206 PGIDVILSGHTHERTPKPIIAGGGTLVVEAGSHGK 240 (264)
T ss_pred CCCcEEEeCcccccccCcccccCCEEEEEcCcccc
Confidence 46999999999976543 357899999999885
No 52
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.63 E-value=0.00015 Score=55.84 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=40.3
Q ss_pred CEEEEEEcCCCCC---------C-C------CCHHHHHHHHhhCCCCEEEECCccCee-EEEECCEEEEcC
Q 032130 37 QFKLGICHGHQVI---------P-W------GDLDSLAMLQRQLDVDILVTGHTHQFK-AYKHEGGVVINP 90 (147)
Q Consensus 37 g~~i~~~Hg~~~~---------~-~------~~~~~l~~~~~~~~~diii~GHtH~p~-~~~~~~~~~iNp 90 (147)
+..|+++|..|.. + + ...+.+.+++++++++++||||+|... ....+++.++|+
T Consensus 165 ~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~~~~i~~~~~~~~ 235 (239)
T TIGR03729 165 KQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFGPLTIGGTTYHNR 235 (239)
T ss_pred CCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCCCEEECCEEEEec
Confidence 4579999987632 1 1 123677888888899999999999986 445688888775
No 53
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.60 E-value=0.0013 Score=49.43 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.5
Q ss_pred hhCCCCEEEECCccCeeEE
Q 032130 62 RQLDVDILVTGHTHQFKAY 80 (147)
Q Consensus 62 ~~~~~diii~GHtH~p~~~ 80 (147)
...++|++++||||-..+.
T Consensus 151 ~~~~~dl~l~GHtHggqi~ 169 (223)
T cd07385 151 AAWGVDLQLSGHTHGGQIR 169 (223)
T ss_pred cccCccEEEeccCCCCEEe
Confidence 4578999999999976543
No 54
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.59 E-value=7.3e-05 Score=55.12 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=43.9
Q ss_pred CCeEEEeCCCCCCCC-CCc--eEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEEEEC----C
Q 032130 12 PDLHVTRGEYDEDSR-YPE--TKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHE----G 84 (147)
Q Consensus 12 ~~~~~V~GN~D~~~~-lP~--~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~~~~----~ 84 (147)
.++++|+||||.... ... ...-.+...-|+++|-+.. .+++..+++++++||+|-....... .
T Consensus 88 ~~~~~v~GNHD~g~~~~~~~~~~~~~f~~~fi~l~H~p~~----------~~~~~~~~~~~lsGH~H~~~~~~~~~~~~~ 157 (171)
T cd07384 88 IPVYYVPGNHDIGYGEVISFPEVVDRFERYFILLTHIPLY----------RLLDTIKPVLILSGHDHDQCEVVHSSKAGS 157 (171)
T ss_pred ceEEEECCccccCCCCccccHHHHHHHHhhheeEECCccH----------HHHhccCceEEEeCcccCCeEEEecCCCCC
Confidence 468999999997531 121 1111122233999995421 1345568999999999977544332 3
Q ss_pred EEEEcCCCCCC
Q 032130 85 GVVINPGSATG 95 (147)
Q Consensus 85 ~~~iNpGS~g~ 95 (147)
..-|...|++.
T Consensus 158 ~~ei~v~S~s~ 168 (171)
T cd07384 158 VREITVKSFSW 168 (171)
T ss_pred ceEEeeccchh
Confidence 45555555554
No 55
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.52 E-value=0.00052 Score=51.83 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=24.7
Q ss_pred HHhhCCCCEEEECCccCeeEE---EECCEEEEcCCCCC
Q 032130 60 LQRQLDVDILVTGHTHQFKAY---KHEGGVVINPGSAT 94 (147)
Q Consensus 60 ~~~~~~~diii~GHtH~p~~~---~~~~~~~iNpGS~g 94 (147)
+....+...||+|||-..... ..++.+-|..|++-
T Consensus 175 ~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~ 212 (225)
T cd00144 175 FLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNY 212 (225)
T ss_pred HHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcc
Confidence 344567889999999887654 34556778888754
No 56
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.51 E-value=0.00085 Score=52.11 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=22.7
Q ss_pred CCCEEEECCccCeeEEEECCEEEEcCCCCC
Q 032130 65 DVDILVTGHTHQFKAYKHEGGVVINPGSAT 94 (147)
Q Consensus 65 ~~diii~GHtH~p~~~~~~~~~~iNpGS~g 94 (147)
+.+.||+|||=.......++.+.|..|++-
T Consensus 184 g~~~vV~GHtp~~~~~~~~~~i~IDtGa~~ 213 (245)
T PRK13625 184 GTAWIVYGHTPVKEPRFVNHTVNIDTGCVF 213 (245)
T ss_pred CCcEEEECCCCCccceecCCeEEEECcCcc
Confidence 456899999976554555778889999865
No 57
>PLN02533 probable purple acid phosphatase
Probab=97.44 E-value=0.0032 Score=52.84 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=58.5
Q ss_pred HHHHHHhhCCCCEEEECCccCeeEEE--------ECCEEEEcCCCCCCCCCC--C--C--------CCCCCeEEEEEEe-
Q 032130 56 SLAMLQRQLDVDILVTGHTHQFKAYK--------HEGGVVINPGSATGAYSS--F--T--------FDVNPSFVLMDID- 114 (147)
Q Consensus 56 ~l~~~~~~~~~diii~GHtH~p~~~~--------~~~~~~iNpGS~g~p~~~--~--~--------~~~~~~y~il~~~- 114 (147)
.+..++.++++|++++||.|...... ..+.++|-.|+.|..-+. . . +.....|.+|++-
T Consensus 313 ~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~~l~v~n 392 (427)
T PLN02533 313 SMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHGQLNVVD 392 (427)
T ss_pred HHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEEEEEEEc
Confidence 56777888999999999999754311 246788888998875211 0 0 0123467778764
Q ss_pred CCEEEEEEEEecCC-eEeeeEEEEeecCcc
Q 032130 115 GLRVVVYVYELIDG-EVKVDKIDFKKTATT 143 (147)
Q Consensus 115 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~ 143 (147)
...+..++++-+++ .+...+.++.|.+..
T Consensus 393 ~t~l~~~~~~~~~~~~~~~D~~~i~~~~~~ 422 (427)
T PLN02533 393 ANTMEWTWHRNDDDQSVASDSVWLKSLLTE 422 (427)
T ss_pred CCeEEEEEEecCCCCceeeeEEEEEeccCC
Confidence 45677888775555 566777777776654
No 58
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.42 E-value=0.0011 Score=52.19 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=41.1
Q ss_pred CEEEEEEcCCCCCCC----CCHHHHHHHHhh-CCCCEEEECCccCeeEE-EECCEEEEcCCCCCC
Q 032130 37 QFKLGICHGHQVIPW----GDLDSLAMLQRQ-LDVDILVTGHTHQFKAY-KHEGGVVINPGSATG 95 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~----~~~~~l~~~~~~-~~~diii~GHtH~p~~~-~~~~~~~iNpGS~g~ 95 (147)
+.-|+++|....... .......+++++ .++|+|++||+|..... ..++++++++|+-+.
T Consensus 185 D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~~~~~~~~v~q~g~~g~ 249 (277)
T cd07410 185 DVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAILTGHQHRRFPGPTVNGVPVVQPGNWGS 249 (277)
T ss_pred CEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEEeCCCccccccCCcCCEEEEcCChhhC
Confidence 446778886554221 111223456655 68999999999998765 568899999999885
No 59
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.42 E-value=0.0013 Score=53.58 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=33.4
Q ss_pred CCCCEEEECCccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEE
Q 032130 64 LDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 118 (147)
Q Consensus 64 ~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~ 118 (147)
.+.|.+..||+|.+.. . ..+.-|||+-.- +-...+...+|.+++.+..++
T Consensus 178 ~~fdyvALGHiH~~~~--~--~~i~Y~GSp~~~-sf~E~~~~KG~~~vd~~~~~~ 227 (340)
T PHA02546 178 KKYKQVWSGHFHTISE--K--GNVTYIGTPYTL-TAGDENDPRGFWVFDTETHKL 227 (340)
T ss_pred ccCCEEeecccccCcc--c--CCEEEeCCceee-CccccCCCCeEEEEECCCCce
Confidence 3588999999998742 2 236778996542 111233468888998877654
No 60
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.34 E-value=0.00028 Score=51.26 Aligned_cols=72 Identities=22% Similarity=0.192 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCCCC--CCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCee-EEEECCEEEE
Q 032130 12 PDLHVTRGEYDEDS--RYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFK-AYKHEGGVVI 88 (147)
Q Consensus 12 ~~~~~V~GN~D~~~--~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~-~~~~~~~~~i 88 (147)
.++++|+||||... .++....-.+...-|+++|.+. ..+....+.+++++||+|-.. ....++..-+
T Consensus 77 ~~i~~v~GNHD~~~~~~~~~~~~~~~~~~~~~l~H~p~----------~~~~~~~~~~~~l~GH~H~~~~~~~~~~~~e~ 146 (156)
T cd08165 77 LPLHVVVGNHDIGFHYEMTTYKLERFEKVFILLQHFPL----------YRLLQWLKPRLVLSGHTHSFCEVTHPDGTPEV 146 (156)
T ss_pred CeEEEEcCCCCcCCCCccCHHHHHHHHHHeeeeeCChH----------HHHHHhhCCCEEEEcccCCCceeEEECCEEEE
Confidence 36899999999753 1221111111112288899542 124445678999999999743 3345666655
Q ss_pred cCCCC
Q 032130 89 NPGSA 93 (147)
Q Consensus 89 NpGS~ 93 (147)
-.=|.
T Consensus 147 ~~~~~ 151 (156)
T cd08165 147 TVPSF 151 (156)
T ss_pred EEecc
Confidence 44333
No 61
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=97.21 E-value=0.0012 Score=51.09 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=34.6
Q ss_pred CeEEEeCCCCCCC--CCCce---EEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCee
Q 032130 13 DLHVTRGEYDEDS--RYPET---KTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 13 ~~~~V~GN~D~~~--~lP~~---~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
++..|+||||... .+|.. ..-+..-..++++||+..... .+.. +|.||.|-..
T Consensus 99 evi~i~GNHD~~i~~~~~~~~v~v~~~~~i~~~~~~HGh~~~~~------------~~~~-~I~GHeHPav 156 (235)
T COG1407 99 EVIIIRGNHDNGIEEILPGFNVEVVDELEIGGLLFRHGHKEPEP------------EGLE-VIIGHEHPAV 156 (235)
T ss_pred cEEEEeccCCCccccccccCCceeeeeEEecCEEEEeCCCCCcc------------ccce-EEcccCCccE
Confidence 5899999999874 33443 333334456999999975321 1112 8999999543
No 62
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.21 E-value=0.0036 Score=49.67 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=36.4
Q ss_pred CEEEEEEcCCCCCCCC---CHHHHHHHHhh---CCCCEEEECCccCeeE-------------------EEECCEEEEcCC
Q 032130 37 QFKLGICHGHQVIPWG---DLDSLAMLQRQ---LDVDILVTGHTHQFKA-------------------YKHEGGVVINPG 91 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~~---~~~~l~~~~~~---~~~diii~GHtH~p~~-------------------~~~~~~~~iNpG 91 (147)
+.-|++.|........ ....-.+++++ .++|+||.||+|.+.. ...+++++++||
T Consensus 175 D~VI~lsH~G~~~~~~~~~~~~~~~~lA~~~~~~giD~IigGHsH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~q~g 254 (285)
T cd07405 175 DIVIAATHMGHYDNGEHGSNAPGDVEMARALPAGGLDLIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDVQNGVWIVQAH 254 (285)
T ss_pred CEEEEEecccccCCccccccCchHHHHHHhcCCCCCCEEEeCCCCccccCccccccccccccCccccCcccCCEEEEeCC
Confidence 3457778865432110 00111234443 5899999999999763 124678888998
Q ss_pred CCCC
Q 032130 92 SATG 95 (147)
Q Consensus 92 S~g~ 95 (147)
+-|.
T Consensus 255 ~~g~ 258 (285)
T cd07405 255 EWGK 258 (285)
T ss_pred hHHc
Confidence 8885
No 63
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=97.17 E-value=0.0029 Score=50.39 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=15.4
Q ss_pred HhhCCCCEEEECCccCeeEE
Q 032130 61 QRQLDVDILVTGHTHQFKAY 80 (147)
Q Consensus 61 ~~~~~~diii~GHtH~p~~~ 80 (147)
+++.++|++++||||-..+.
T Consensus 208 ~~~~~~dLvLSGHTHGGQi~ 227 (284)
T COG1408 208 LRLYGVDLVLSGHTHGGQIR 227 (284)
T ss_pred hccCcceEEEeccccCCeEE
Confidence 44558999999999976543
No 64
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=97.17 E-value=0.0037 Score=49.45 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=25.4
Q ss_pred HHhh-CCCCEEEECCccCeeEE----------------E----ECCEEEEcCCCCCC
Q 032130 60 LQRQ-LDVDILVTGHTHQFKAY----------------K----HEGGVVINPGSATG 95 (147)
Q Consensus 60 ~~~~-~~~diii~GHtH~p~~~----------------~----~~~~~~iNpGS~g~ 95 (147)
++++ .++|+||+||+|..... . .++++++.+|+.|.
T Consensus 200 la~~~~giD~IiggH~H~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ivq~g~~g~ 256 (281)
T cd07409 200 IARKVPGVDVIVGGHSHTFLYTGPPPSGEKPVGPYPTVVKNADGRKVLVVQAYAYGK 256 (281)
T ss_pred HHHcCCCCcEEEeCCcCccccCCCCCcCcccCCCCCEEeeCCCCCEEEEEeCChHHh
Confidence 4443 47999999999996521 1 13577889988885
No 65
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.16 E-value=0.0093 Score=46.93 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=64.1
Q ss_pred CCeEEEeCCCCCCC-CC----------C------------ceEEEEECCEEEEEEcCCCCC------CCCC-HHHHHH--
Q 032130 12 PDLHVTRGEYDEDS-RY----------P------------ETKTLTIGQFKLGICHGHQVI------PWGD-LDSLAM-- 59 (147)
Q Consensus 12 ~~~~~V~GN~D~~~-~l----------P------------~~~~~~~~g~~i~~~Hg~~~~------~~~~-~~~l~~-- 59 (147)
.++...+||||.-. .+ | ....++++|.+|+++||...+ +..+ .+.++.
T Consensus 95 i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~ky~~~~~~l~~me~~L 174 (257)
T cd07387 95 VPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILKYSSLESRLDILERTL 174 (257)
T ss_pred CeEEECCCCCCcccccCCCCCCCHHHhhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 36889999999751 11 1 224689999999999996642 1111 111211
Q ss_pred -----------------------HHhhCCCCEEEECCccCeeEEEE-----CCEEEEcCCCCCCCCCCCCCCCCCeEEEE
Q 032130 60 -----------------------LQRQLDVDILVTGHTHQFKAYKH-----EGGVVINPGSATGAYSSFTFDVNPSFVLM 111 (147)
Q Consensus 60 -----------------------~~~~~~~diii~GHtH~p~~~~~-----~~~~~iNpGS~g~p~~~~~~~~~~~y~il 111 (147)
+.-+.-+++.++||.|....... ..+++|+..++.. ..+.+++
T Consensus 175 ~wrHlaPTaPDTL~~yP~~~~Dpfvi~~~PhVyf~Gnq~~f~t~~~~~~~~~~v~lv~vP~Fs~---------t~~~vlv 245 (257)
T cd07387 175 KWRHIAPTAPDTLWCYPFTDRDPFILEECPHVYFAGNQPKFGTKLVEGEEGQRVLLVCVPSFSK---------TGTAVLV 245 (257)
T ss_pred HhcccCCCCCCccccccCCCCCceeecCCCCEEEeCCCcceeeeEEEcCCCCeEEEEEeCCcCc---------CCEEEEE
Confidence 11233589999999998765443 2378999988875 3789999
Q ss_pred EEeCCE
Q 032130 112 DIDGLR 117 (147)
Q Consensus 112 ~~~~~~ 117 (147)
+++.-.
T Consensus 246 dl~tLe 251 (257)
T cd07387 246 NLRTLE 251 (257)
T ss_pred ECCcCc
Confidence 987544
No 66
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.12 E-value=0.00052 Score=51.79 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=34.9
Q ss_pred CCeEEEeCCCCCCCCCCc-e-EEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEE
Q 032130 12 PDLHVTRGEYDEDSRYPE-T-KTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAY 80 (147)
Q Consensus 12 ~~~~~V~GN~D~~~~lP~-~-~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~ 80 (147)
.+++.|+||||-...-+. . ..-.+...-|+++|.+... .....++++++|||+|--.+.
T Consensus 99 i~~i~V~GNHDIG~~~~~~~~~i~RF~~~FilL~H~P~~~----------~~~~~~~dl~lSGHtHgGqi~ 159 (193)
T cd08164 99 TPLINIAGNHDVGYGGEVTEARIERFESLFILLTHVPLYK----------IFLEGKPGLILTGHDHEGCDY 159 (193)
T ss_pred ceEEEECCcccCCCCCccchHHhhheheeEEEEEccccee----------ccccCCCCEEEeCccCCCeEE
Confidence 457899999997532111 1 0111111229999965321 112358999999999965554
No 67
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.09 E-value=0.0022 Score=48.51 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=47.4
Q ss_pred CCeEEEeCCCCCCC----CCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEEEECCEEE
Q 032130 12 PDLHVTRGEYDEDS----RYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVV 87 (147)
Q Consensus 12 ~~~~~V~GN~D~~~----~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~~~~~~~~ 87 (147)
.++++|+||||-.. ..|..+. .+...-|++.|=+..... + ..+...+.+.++++|++||.|...+........
T Consensus 81 ~~~~~VpGNHDIG~~~~~~~~~~v~-RF~~~Fi~lsH~P~~~~~-~-~~~~~~~~~~~p~~Ifs~H~H~s~~~~~~~~~~ 157 (195)
T cd08166 81 TKIIYLPGDNDIGGEEEDPIESKIR-RFEKYFIMLSHVPLLAEG-G-QALKHVVTDLDPDLIFSAHRHKSSIFMYDRLLR 157 (195)
T ss_pred CcEEEECCCCCcCCCCCCcCHHHHH-HHHHhheeeecccccccc-c-HHHHHHHHhcCceEEEEcCccceeeEEeecccc
Confidence 36799999999652 1232110 001111888896654322 2 255667778899999999999998877655544
Q ss_pred Ec
Q 032130 88 IN 89 (147)
Q Consensus 88 iN 89 (147)
+|
T Consensus 158 ~~ 159 (195)
T cd08166 158 QN 159 (195)
T ss_pred hh
Confidence 34
No 68
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=96.95 E-value=0.0069 Score=48.09 Aligned_cols=59 Identities=25% Similarity=0.290 Sum_probs=38.9
Q ss_pred CEEEEEEcCCCCCCCCC------HHHHHHHHhh--CCCCEEEECCccCeeEE---EECCEEEEcCCCCCC
Q 032130 37 QFKLGICHGHQVIPWGD------LDSLAMLQRQ--LDVDILVTGHTHQFKAY---KHEGGVVINPGSATG 95 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~~~------~~~l~~~~~~--~~~diii~GHtH~p~~~---~~~~~~~iNpGS~g~ 95 (147)
+.-|++.|......... .....+++.+ .++|+|+.||+|..... ..++++++.||+-|.
T Consensus 193 D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~~~~~~~~~~v~q~g~~g~ 262 (288)
T cd07412 193 DAIVVLAHEGGSTKGGDDTCSAASGPIADIVNRLDPDVDVVFAGHTHQAYNCTVPAGNPRLVTQAGSYGK 262 (288)
T ss_pred CEEEEEeCCCCCCCCCCccccccChhHHHHHhhcCCCCCEEEeCccCccccccccCcCCEEEEecChhhc
Confidence 34577788655421110 0122334433 57999999999998765 458899999999996
No 69
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=96.87 E-value=0.0067 Score=47.25 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=36.7
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHhh-CCCCEEEECCccCeeEEE---ECCEEEEcCCCCCC
Q 032130 37 QFKLGICHGHQVIPWGDLDSLAMLQRQ-LDVDILVTGHTHQFKAYK---HEGGVVINPGSATG 95 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~~~~~~l~~~~~~-~~~diii~GHtH~p~~~~---~~~~~~iNpGS~g~ 95 (147)
+.-|+++|.......... .-.++++. .++|+||.||+|...... .++++++.+|+-|.
T Consensus 173 D~iIvl~H~G~~~~~~~~-~~~~la~~~~giDvIigGH~H~~~~~~~~~~~~~~ivq~g~~g~ 234 (257)
T cd07408 173 DVIVALGHLGVDRTSSPW-TSTELAANVTGIDLIIDGHSHTTIEIGKKDGNNVLLTQTGAYLA 234 (257)
T ss_pred CEEEEEeCcCcCCCCCCc-cHHHHHHhCCCceEEEeCCCcccccCcccccCCeEEEcCChHHc
Confidence 345777775443211011 11233333 589999999999976543 57899999999775
No 70
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.80 E-value=0.0032 Score=49.12 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=38.7
Q ss_pred CEEEEEEcCCCCCCC----CCHHHHHHHHhhCCCCEEEECCccCeeE-EEE--CC---EEEEcCCCCCC
Q 032130 37 QFKLGICHGHQVIPW----GDLDSLAMLQRQLDVDILVTGHTHQFKA-YKH--EG---GVVINPGSATG 95 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~----~~~~~l~~~~~~~~~diii~GHtH~p~~-~~~--~~---~~~iNpGS~g~ 95 (147)
..+|+++|.++.... .....+.++++++++++++|||+|.... ... ++ -++.||.+.-+
T Consensus 166 ~~~IV~~HhP~~~~~~~~~~~~~~~~~ll~~~~v~~vl~GH~H~~~~~~p~h~~~~~~~~~~~p~~~~~ 234 (256)
T cd07401 166 NYTIWFGHYPTSTIISPSAKSSSKFKDLLKKYNVTAYLCGHLHPLGGLEPVHYAGHPYALITNPKPSLY 234 (256)
T ss_pred CeEEEEEcccchhccCCCcchhHHHHHHHHhcCCcEEEeCCccCCCcceeeeecCCceEEEeCCCChHH
Confidence 356888997764211 1122377788889999999999999876 322 33 35567766544
No 71
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.0066 Score=49.99 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=38.3
Q ss_pred CCCEEEECCccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCE
Q 032130 65 DVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLR 117 (147)
Q Consensus 65 ~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~ 117 (147)
.+|++..||.|.+......+..+..|||+-.- +-+.-.....+.+++++.+.
T Consensus 201 ~~~YvALGHiH~~~~~~~~~~~i~y~GS~~~~-~f~E~~~~k~~~~v~~~~~~ 252 (390)
T COG0420 201 GFDYVALGHIHKRQVIPKEDPPIVYPGSPERY-SFGEEGERKGVVLVEFSGGK 252 (390)
T ss_pred CcceEEcCCcccccccCCCCCceecCCCceec-chhHcCCcccEEEEEecCCc
Confidence 38999999999998766655566899998763 11233445677789998884
No 72
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=96.65 E-value=0.019 Score=48.93 Aligned_cols=82 Identities=20% Similarity=0.103 Sum_probs=52.1
Q ss_pred CEEEEEEcCCCCCC-------------CCCHHHHHHHHhhC-CCCEEEECCccCeeEEEE---------CCEEEEcCCCC
Q 032130 37 QFKLGICHGHQVIP-------------WGDLDSLAMLQRQL-DVDILVTGHTHQFKAYKH---------EGGVVINPGSA 93 (147)
Q Consensus 37 g~~i~~~Hg~~~~~-------------~~~~~~l~~~~~~~-~~diii~GHtH~p~~~~~---------~~~~~iNpGS~ 93 (147)
...|+++|++++.. ....+++.++++.+ ++..+++||+|...+... .+-+=||.+|.
T Consensus 338 k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSl 417 (496)
T TIGR03767 338 TLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASH 417 (496)
T ss_pred CCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEecccc
Confidence 35788999876421 11235677888776 789999999998875432 25566999996
Q ss_pred CCCCCCCCCCCCCeEEEEEE---eCCEEEEEEEEec
Q 032130 94 TGAYSSFTFDVNPSFVLMDI---DGLRVVVYVYELI 126 (147)
Q Consensus 94 g~p~~~~~~~~~~~y~il~~---~~~~~~v~~~~~~ 126 (147)
-.= +-.|=++++ .++.+.+..-.++
T Consensus 418 vdf--------Pq~~Ri~Ei~~n~dgt~si~tt~vd 445 (496)
T TIGR03767 418 IDF--------PQQGRIIELADNQDGTVSIFTTLIE 445 (496)
T ss_pred ccC--------CCCceEEEEEeCCCCcEEEEEEecc
Confidence 641 234555555 3455666554443
No 73
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=96.65 E-value=0.011 Score=45.50 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=26.9
Q ss_pred CCCCEEEECCccCeeEE--EECCEEEEcCCCCCC
Q 032130 64 LDVDILVTGHTHQFKAY--KHEGGVVINPGSATG 95 (147)
Q Consensus 64 ~~~diii~GHtH~p~~~--~~~~~~~iNpGS~g~ 95 (147)
.++|+|++||+|..... ..++++++.+|+-+.
T Consensus 193 ~giDlvlggH~H~~~~~~~~~~~~~v~~~g~~~~ 226 (252)
T cd00845 193 PGIDVILGGHTHHLLEEPEVVNGTLIVQAGKYGK 226 (252)
T ss_pred CCccEEEcCCcCcccCCCcccCCEEEEeCChhHc
Confidence 58999999999987543 567899999999885
No 74
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=96.49 E-value=0.0063 Score=47.82 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=36.1
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCCC---------------------------------CCCceEEEEECCEEEEEEcCCCC
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDEDS---------------------------------RYPETKTLTIGQFKLGICHGHQV 48 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~~---------------------------------~lP~~~~~~~~g~~i~~~Hg~~~ 48 (147)
|+++.|+++..++.+|+||||... ++|.. ...++.+++++|+...
T Consensus 45 evl~~l~~l~~~v~~VlGNHD~~ll~~~~g~~~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~--~~~~~~~~l~vHAGi~ 122 (257)
T cd07422 45 ETLRFVKSLGDSAKTVLGNHDLHLLAVAAGIKKPKKKDTLDDILNAPDRDELLDWLRHQPLL--HRDPELGILMVHAGIP 122 (257)
T ss_pred HHHHHHHhcCCCeEEEcCCchHHHHHHhcCccccccHhHHHHHHhccchHHHHHHHHhCCCE--EEECCccEEEEccCCC
Confidence 689999998767999999999651 34443 4556678999998876
Q ss_pred CCC
Q 032130 49 IPW 51 (147)
Q Consensus 49 ~~~ 51 (147)
..+
T Consensus 123 p~w 125 (257)
T cd07422 123 PQW 125 (257)
T ss_pred CCC
Confidence 444
No 75
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.44 E-value=0.016 Score=52.12 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=38.8
Q ss_pred EEEEEEcCCCCCCCC--CHHHHHH-HHhhCCCCEEEECCccCeeEEEECCEEEEcCCCCCC
Q 032130 38 FKLGICHGHQVIPWG--DLDSLAM-LQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATG 95 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~~--~~~~l~~-~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~ 95 (147)
.-|++.|........ ..+.... +.+-.++|+||.||+|..+....++++++.||+.|.
T Consensus 247 vIIaLsH~G~~~d~~~~~~ena~~~l~~v~gID~IlgGHsH~~~~~~ingv~vvqaG~~G~ 307 (780)
T PRK09418 247 VIVALAHSGVDKSGYNVGMENASYYLTEVPGVDAVLMGHSHTEVKDVFNGVPVVMPGVFGS 307 (780)
T ss_pred EEEEEeccCcccccccccchhhhHHHhcCCCCCEEEECCCCCcccccCCCEEEEEcChhhc
Confidence 457788865432110 0111111 222358999999999998876678999999999996
No 76
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=96.30 E-value=0.015 Score=46.18 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHhhC-CCC-EEEECCccCeeEEE-ECCEEEEcCCCCCC
Q 032130 39 KLGICHGHQVIPWGDLDSLAMLQRQL-DVD-ILVTGHTHQFKAYK-HEGGVVINPGSATG 95 (147)
Q Consensus 39 ~i~~~Hg~~~~~~~~~~~l~~~~~~~-~~d-iii~GHtH~p~~~~-~~~~~~iNpGS~g~ 95 (147)
-|+++|..........+...++++.. +.| +||.||+|...... .++++++.||+.|.
T Consensus 191 IIvlsH~G~~~d~~~~~~~~~la~~~~~id~~Ii~GHsH~~~~~~~~~~~~ivq~G~~g~ 250 (282)
T cd07407 191 ILVLGHMPVRDDAEFKVLHDAIRKIFPDTPIQFLGGHSHVRDFTQYDSSSTGLESGRYLE 250 (282)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHhCCCCCEEEEeCCcccccceeccCcEEEEeccchhh
Confidence 46666755432211111123344443 567 79999999753333 36899999999996
No 77
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=96.28 E-value=0.089 Score=42.60 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=20.3
Q ss_pred HHHHHHHhhCCCCEEEECCccCee
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
+.+.+++++.+.++||-||.-...
T Consensus 234 ~~~~~Fl~~n~l~~iiR~He~~~~ 257 (316)
T cd07417 234 DVTKRFLEENNLEYIIRSHEVKDE 257 (316)
T ss_pred HHHHHHHHHcCCcEEEECCcccce
Confidence 467888999999999999997653
No 78
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.26 E-value=0.072 Score=41.86 Aligned_cols=93 Identities=20% Similarity=0.228 Sum_probs=55.5
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCCC-----------------CCCc------eEEEEECCEEEEEEc--CCCCCCC-CC--
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDEDS-----------------RYPE------TKTLTIGQFKLGICH--GHQVIPW-GD-- 53 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~~-----------------~lP~------~~~~~~~g~~i~~~H--g~~~~~~-~~-- 53 (147)
+++++|++++.++... |||+++. .+|. ...++.+|.+|.++- |....+. .+
T Consensus 49 ~~~~~L~~~G~D~iTl-GNH~fD~gel~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~ 127 (255)
T cd07382 49 KIAKELLSAGVDVITM-GNHTWDKKEILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPF 127 (255)
T ss_pred HHHHHHHhcCCCEEEe-cccccCcchHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHH
Confidence 4678899988665555 9998762 2221 355678899877654 3222110 00
Q ss_pred -------------------------HHHHHHHHhh--CCCCEEEECCccCeeEEE--E-CCEE-EEcCCCCCC
Q 032130 54 -------------------------LDSLAMLQRQ--LDVDILVTGHTHQFKAYK--H-EGGV-VINPGSATG 95 (147)
Q Consensus 54 -------------------------~~~l~~~~~~--~~~diii~GHtH~p~~~~--~-~~~~-~iNpGS~g~ 95 (147)
.++...++.. .++|+|+.||||.+.... . +++. +-.+|-+|.
T Consensus 128 ~~~~~~v~~lk~~~D~IIV~~H~g~tsEk~ala~~ldg~VdvIvGtHTHv~t~d~~il~~gTa~itd~Gm~G~ 200 (255)
T cd07382 128 RAADELLEELKEEADIIFVDFHAEATSEKIALGWYLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTGP 200 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEEECCCCCHHHHHHHHhCCCCceEEEeCCCCccCCccEEeeCCeEEEecCccccC
Confidence 0111223333 259999999999986543 4 7774 457777775
No 79
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=96.26 E-value=0.0087 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.9
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCC
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDED 24 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~ 24 (147)
++++.++++..++.+|+||||..
T Consensus 47 ~vl~~l~~l~~~~~~VlGNHD~~ 69 (275)
T PRK00166 47 EVLRFVKSLGDSAVTVLGNHDLH 69 (275)
T ss_pred HHHHHHHhcCCCeEEEecChhHH
Confidence 68899998876799999999974
No 80
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.18 E-value=0.0096 Score=47.39 Aligned_cols=48 Identities=29% Similarity=0.358 Sum_probs=35.7
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCCC---------------------------------CCCceEEEEECCEEEEEEcCCCC
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDEDS---------------------------------RYPETKTLTIGQFKLGICHGHQV 48 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~~---------------------------------~lP~~~~~~~~g~~i~~~Hg~~~ 48 (147)
|+++.++++...+.+|+||||... .+|... ..++.+++++|+...
T Consensus 47 evL~~l~~l~~~~~~VlGNHD~~lL~~~~g~~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i--~~~~~~~~lVHAGi~ 124 (279)
T TIGR00668 47 EVLRYVKSLGDAVRLVLGNHDLHLLAVFAGISRNKPKDRLDPLLEAPDADELLNWLRRQPLLQ--HDEEKKLVMAHAGIT 124 (279)
T ss_pred HHHHHHHhcCCCeEEEEChhHHHHHHHhcCCCccCchHHHHHHHHccCHHHHHHHHHcCCcEE--EeCCCCEEEEecCCC
Confidence 688999998766889999999631 455543 345778999999876
Q ss_pred CCC
Q 032130 49 IPW 51 (147)
Q Consensus 49 ~~~ 51 (147)
+.+
T Consensus 125 P~w 127 (279)
T TIGR00668 125 PQW 127 (279)
T ss_pred CCC
Confidence 444
No 81
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.16 E-value=0.0061 Score=46.66 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=21.0
Q ss_pred CEEEECCccCee--EEEECCEEEEcCCCCC
Q 032130 67 DILVTGHTHQFK--AYKHEGGVVINPGSAT 94 (147)
Q Consensus 67 diii~GHtH~p~--~~~~~~~~~iNpGS~g 94 (147)
..||+|||=... ....++.+-|..|++.
T Consensus 178 ~~Vv~GHt~~~~~~~~~~~~~i~iDTGA~~ 207 (222)
T cd07413 178 KPVFVGHYWLNGEPAPLNPNVACLDYSAAK 207 (222)
T ss_pred CCEEEecCCCCCCCccccCCEEEEeccccc
Confidence 679999997742 3345778889999875
No 82
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=96.11 E-value=0.045 Score=47.31 Aligned_cols=74 Identities=11% Similarity=0.097 Sum_probs=43.5
Q ss_pred CEEEEEEcCCCCCCCCC---HHHHHHHHhhC---CCCEEEECCccCeeE-------------------EEECCEEEEcCC
Q 032130 37 QFKLGICHGHQVIPWGD---LDSLAMLQRQL---DVDILVTGHTHQFKA-------------------YKHEGGVVINPG 91 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~~~---~~~l~~~~~~~---~~diii~GHtH~p~~-------------------~~~~~~~~iNpG 91 (147)
+.-|+++|......... .+.-.+++++. ++|+||.||+|.... ...++++++.+|
T Consensus 211 D~IV~LsH~G~~~~~~~~~~~~~d~~la~~~~~~~IDvIlgGHsH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivqag 290 (551)
T PRK09558 211 DVIIALTHMGHYDDGEHGSNAPGDVEMARSLPAGGLDMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGTWIVQAH 290 (551)
T ss_pred CEEEEEeccccccCCccCCCCccHHHHHHhCCccCceEEEeCCCCcccccCCCcccccccCCCCCCCCcccCCEEEEecC
Confidence 34578888665321110 01113445443 799999999998653 124678889998
Q ss_pred CCCCCCCCCCCCCCCeEEEEEEeCCEEE
Q 032130 92 SATGAYSSFTFDVNPSFVLMDIDGLRVV 119 (147)
Q Consensus 92 S~g~p~~~~~~~~~~~y~il~~~~~~~~ 119 (147)
+.|.- -.-+-|+++++++.
T Consensus 291 ~~g~~---------vg~l~l~~~~g~~~ 309 (551)
T PRK09558 291 EWGKY---------VGRADFEFRNGELK 309 (551)
T ss_pred hhhhe---------eEEEEEEEECCeEE
Confidence 88853 23344555555543
No 83
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.09 E-value=0.019 Score=45.09 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=17.6
Q ss_pred HHHHhhCCCCEEEECCccCeeE
Q 032130 58 AMLQRQLDVDILVTGHTHQFKA 79 (147)
Q Consensus 58 ~~~~~~~~~diii~GHtH~p~~ 79 (147)
.++++..++.+|++||+|....
T Consensus 209 ~~il~~~~P~~vfsGhdH~~C~ 230 (257)
T cd08163 209 EVILKAVQPVIAFSGDDHDYCE 230 (257)
T ss_pred HHHHHhhCCcEEEecCCCccce
Confidence 4566667999999999997654
No 84
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.00 E-value=0.033 Score=50.41 Aligned_cols=58 Identities=22% Similarity=0.105 Sum_probs=36.1
Q ss_pred EEEEEEcCCCCCCCC--CHH-HHHHHHhhCCCCEEEECCccCeeEE------------------EECCEEEEcCCCCCC
Q 032130 38 FKLGICHGHQVIPWG--DLD-SLAMLQRQLDVDILVTGHTHQFKAY------------------KHEGGVVINPGSATG 95 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~~--~~~-~l~~~~~~~~~diii~GHtH~p~~~------------------~~~~~~~iNpGS~g~ 95 (147)
.-|.+.|........ ..+ ....+++-.++|+||.||+|..+-. ..+++.++.||++|.
T Consensus 312 vIIaLsH~G~~~d~~~~~~En~~~~LA~v~GIDaIvgGHsH~~~p~~~~~~~~~~~p~vd~~~g~ingvpvVqaG~~G~ 390 (814)
T PRK11907 312 IVLVLSHSGIGDDQYEVGEENVGYQIASLSGVDAVVTGHSHAEFPSGNGTSFYAKYSGVDDINGKINGTPVTMAGKYGD 390 (814)
T ss_pred EEEEEeCCCcccccccccccchhhHHhcCCCCCEEEECCCCCcccCccccccccccCcccccCCcCCCEEEEecChhhc
Confidence 457788865432110 011 1123444468999999999996521 125789999999995
No 85
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=95.98 E-value=0.056 Score=46.83 Aligned_cols=21 Identities=14% Similarity=-0.016 Sum_probs=16.0
Q ss_pred HhHHHHhhCCCeEEEeCCCCCC
Q 032130 3 VHDYLKSLCPDLHVTRGEYDED 24 (147)
Q Consensus 3 ~l~~l~~~~~~~~~V~GN~D~~ 24 (147)
+++.+++++. -.++.||||++
T Consensus 74 ~i~~~N~~g~-Da~~lGNHEFd 94 (550)
T TIGR01530 74 DAALMNAAGF-DFFTLGNHEFD 94 (550)
T ss_pred HHHHHhccCC-CEEEecccccc
Confidence 4667777774 47789999987
No 86
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.82 E-value=0.047 Score=42.02 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCCCCC---CHHHHHHHHhhCCCCEEEECCccCee-EEEECCEEEE
Q 032130 36 GQFKLGICHGHQVIPWG---DLDSLAMLQRQLDVDILVTGHTHQFK-AYKHEGGVVI 88 (147)
Q Consensus 36 ~g~~i~~~Hg~~~~~~~---~~~~l~~~~~~~~~diii~GHtH~p~-~~~~~~~~~i 88 (147)
.+.-|+++|........ .+.++.+.+.+.++|+||.||+|.+. ++..++++++
T Consensus 173 ~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e~~~~~~I~ 229 (239)
T smart00854 173 ADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQPIEIYKGKLIA 229 (239)
T ss_pred CCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCcCCceEEECCEEEE
Confidence 45678888866543221 12233333334689999999999874 3444666553
No 87
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=95.81 E-value=0.035 Score=48.83 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCCC-C-CCHHHH-HHHHhhCCCCEEEECCccCeeEE--------------EECCEEEEcCCCCCC
Q 032130 38 FKLGICHGHQVIP-W-GDLDSL-AMLQRQLDVDILVTGHTHQFKAY--------------KHEGGVVINPGSATG 95 (147)
Q Consensus 38 ~~i~~~Hg~~~~~-~-~~~~~l-~~~~~~~~~diii~GHtH~p~~~--------------~~~~~~~iNpGS~g~ 95 (147)
.-|+++|...... . ...+.. ..+.+-.++|+||.||+|..+.. ..++++++.||+.|.
T Consensus 198 vII~LsH~G~~~d~~~~~~en~~~~l~~v~gID~Il~GHsH~~~~~~~~~~~~~~d~~~~~i~g~~vvqaG~~G~ 272 (626)
T TIGR01390 198 IIVALAHSGISADPYQPGAENSAYYLTKVPGIDAVLFGHSHAVFPGKDFATIPGADITNGTINGVPAVMAGYWGN 272 (626)
T ss_pred EEEEEeccCcCCCccccccchHHHHHhcCCCCCEEEcCCCCccCcCcccccCCcccccccccCCEEEEeCChhhc
Confidence 4577888654321 1 011221 22233358999999999996532 236789999999996
No 88
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=95.72 E-value=0.075 Score=46.99 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=36.8
Q ss_pred CEEEEEEcCCCCCCC--CCHHH-HHHHHhhCCCCEEEECCccCeeEE--------------EECCEEEEcCCCCCC
Q 032130 37 QFKLGICHGHQVIPW--GDLDS-LAMLQRQLDVDILVTGHTHQFKAY--------------KHEGGVVINPGSATG 95 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~--~~~~~-l~~~~~~~~~diii~GHtH~p~~~--------------~~~~~~~iNpGS~g~ 95 (147)
+.-|+++|....... ...+. ...+.+-.++|+||.||+|..+-. ..+++.++.||++|.
T Consensus 220 DvII~LsH~G~~~d~~~~~aen~~~~l~~v~gID~Il~GHsH~~~p~~~~~~~~~~d~~~g~i~g~pvv~aG~~G~ 295 (649)
T PRK09420 220 DIVVAIPHSGISADPYKAMAENSVYYLSEVPGIDAIMFGHSHAVFPGKDFADIPGADIAKGTLNGVPAVMPGRWGD 295 (649)
T ss_pred CEEEEEecCCcCCCCccccccchhHHHhcCCCCCEEEeCCCCccCcCcccccCCccccccccCCCEEEEeCChhhc
Confidence 346778886553211 01111 122333458999999999986421 136789999999995
No 89
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=95.57 E-value=0.47 Score=37.48 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=20.0
Q ss_pred HHHHHHHHhhCCCCEEEECCccCe
Q 032130 54 LDSLAMLQRQLDVDILVTGHTHQF 77 (147)
Q Consensus 54 ~~~l~~~~~~~~~diii~GHtH~p 77 (147)
.+.+.++++..+.++||-||.=.+
T Consensus 200 ~~~~~~Fl~~n~l~~iiR~He~~~ 223 (271)
T smart00156 200 PDAVDEFLKKNNLKLIIRAHQVVD 223 (271)
T ss_pred HHHHHHHHHHCCCeEEEecCcccC
Confidence 346678888999999999998665
No 90
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=95.48 E-value=0.14 Score=44.19 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=44.8
Q ss_pred CCEEEECCccCeeEEE----ECCEEEEcCCCCCC-CCCCCCCCC-CCeEEEEEEeCCEEEEEEEEecC-CeEeeeEEEEe
Q 032130 66 VDILVTGHTHQFKAYK----HEGGVVINPGSATG-AYSSFTFDV-NPSFVLMDIDGLRVVVYVYELID-GEVKVDKIDFK 138 (147)
Q Consensus 66 ~diii~GHtH~p~~~~----~~~~~~iNpGS~g~-p~~~~~~~~-~~~y~il~~~~~~~~v~~~~~~~-~~~~~~~~~~~ 138 (147)
.|+||.||-|.-.+.. ..+=+++.|||.-. +.+ .+.. +....||++.+.++..+-..++. .++....+.++
T Consensus 239 ~DlviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~--~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~~~~ivL~ 316 (646)
T KOG2310|consen 239 LDLVIWGHEHECKIDPQYNAIQGFYILQPGSSVATSLS--PGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFVMDDIVLA 316 (646)
T ss_pred hhheeeccccccccCcccccccceeeecCCCccccccC--cccccCceEEEEEecCCcccccccccceecceeeeeeEec
Confidence 7899999999755433 35567899999432 222 3333 44556889887666554433321 14666666665
Q ss_pred ecC
Q 032130 139 KTA 141 (147)
Q Consensus 139 ~~~ 141 (147)
..+
T Consensus 317 d~~ 319 (646)
T KOG2310|consen 317 DHP 319 (646)
T ss_pred ccC
Confidence 443
No 91
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=95.48 E-value=0.013 Score=40.20 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=57.4
Q ss_pred CCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCC--CHHHHHHHHhhCCCCEEEECCccCeeEEEEC--CEEEEcCCCCC
Q 032130 19 GEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWG--DLDSLAMLQRQLDVDILVTGHTHQFKAYKHE--GGVVINPGSAT 94 (147)
Q Consensus 19 GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~--~~~~l~~~~~~~~~diii~GHtH~p~~~~~~--~~~~iNpGS~g 94 (147)
|.-+.+..+|....+.. ...++|+++.++.. ..+.+....+....+++.+||+|.+...... ...+.|||+.|
T Consensus 28 g~~~~~~~lp~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~~~g 104 (155)
T COG0639 28 GGLETFDSLPLAAVAEG---GKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRG 104 (155)
T ss_pred chhhHHHhhhHHHHhcC---CceeeecCCCCcchhhhHHHHHHHhhhhcccCCCccccccccCCCCCCCcccccccCCCC
Confidence 34444456666544433 56677777766542 2233333333333489999999998443223 26899999999
Q ss_pred CCCCCCCCCCCCeEEEEEEeCC
Q 032130 95 GAYSSFTFDVNPSFVLMDIDGL 116 (147)
Q Consensus 95 ~p~~~~~~~~~~~y~il~~~~~ 116 (147)
.|+.. .+..+.|++++....
T Consensus 105 ~~~~~--~~~~~~f~~~~~~~~ 124 (155)
T COG0639 105 VPRDG--GDVTAVFGIVHTPKL 124 (155)
T ss_pred CCccc--cchhhHHhhhcccce
Confidence 98421 256788888876554
No 92
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.40 E-value=0.082 Score=49.64 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=39.0
Q ss_pred EEEEEEcCCCCCCC---CCHHHHHHHHhh-CCCCEEEECCccCeeE--------------EEECCEEEEcCCCCCC
Q 032130 38 FKLGICHGHQVIPW---GDLDSLAMLQRQ-LDVDILVTGHTHQFKA--------------YKHEGGVVINPGSATG 95 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~---~~~~~l~~~~~~-~~~diii~GHtH~p~~--------------~~~~~~~~iNpGS~g~ 95 (147)
.-|+++|....... .......+++++ .++|+||.||+|..+. ...++++++.||+.|.
T Consensus 237 vII~l~H~G~~~~~~~~~~en~~~~la~~~~gID~Il~GHsH~~~~~~~~~~~~~~~~~~~~i~g~~ivqag~~g~ 312 (1163)
T PRK09419 237 VIVALAHSGIESEYQSSGAEDSVYDLAEKTKGIDAIVAGHQHGLFPGADYKGVPQFDNAKGTINGIPVVMPKSWGK 312 (1163)
T ss_pred EEEEEeccCcCCCCCCCCcchHHHHHHHhCCCCcEEEeCCCcccccCcccccccccccccceECCEEEEccChhhc
Confidence 45777886543211 122234456644 5899999999998654 2347889999999996
No 93
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.36 E-value=0.066 Score=50.25 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=39.7
Q ss_pred EEEEEEcCCCCCC-CCCHHHHHHHHhh-CCCCEEEECCccCeeEEEECCEEEEcCCCCCC
Q 032130 38 FKLGICHGHQVIP-WGDLDSLAMLQRQ-LDVDILVTGHTHQFKAYKHEGGVVINPGSATG 95 (147)
Q Consensus 38 ~~i~~~Hg~~~~~-~~~~~~l~~~~~~-~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~ 95 (147)
.-|+++|-..... ........+++++ .++|+||.||+|.......++++++.+|+.|.
T Consensus 841 ~VV~LsH~G~~~d~~~~~~~~~~lA~~v~gIDvIigGHsH~~~~~~v~~~~ivqag~~g~ 900 (1163)
T PRK09419 841 AIIALTHLGSNQDRTTGEITGLELAKKVKGVDAIISAHTHTLVDKVVNGTPVVQAYKYGR 900 (1163)
T ss_pred EEEEEecCCccccccccccHHHHHHHhCCCCCEEEeCCCCccccccCCCEEEEeCChhHc
Confidence 3477778554311 1111123455654 47999999999998766678999999999885
No 94
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.30 E-value=0.089 Score=40.36 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=33.1
Q ss_pred CCEEEEEEcCCCCCCCCC---HHHHHHHHhhCCCCEEEECCccCee-EEEECCEEEE
Q 032130 36 GQFKLGICHGHQVIPWGD---LDSLAMLQRQLDVDILVTGHTHQFK-AYKHEGGVVI 88 (147)
Q Consensus 36 ~g~~i~~~Hg~~~~~~~~---~~~l~~~~~~~~~diii~GHtH~p~-~~~~~~~~~i 88 (147)
.+.-|+++|......... +..+.+.+.+.++|+||.||+|.+. ++..++++++
T Consensus 175 ~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E~~~~~~I~ 231 (239)
T cd07381 175 ADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQGIEIYKGKLIF 231 (239)
T ss_pred CCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeEEECCEEEE
Confidence 567788899755432211 2233333335689999999999974 3445666554
No 95
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=94.72 E-value=0.43 Score=37.78 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=57.0
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCCC-----------------CCCc------eEEEEECCEEEEEEc--CCCCCCC---C-
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDEDS-----------------RYPE------TKTLTIGQFKLGICH--GHQVIPW---G- 52 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~~-----------------~lP~------~~~~~~~g~~i~~~H--g~~~~~~---~- 52 (147)
+++++|++.+-++... |||.++. .+|. ...++.+|++|.+.- |..+.+. .
T Consensus 50 ~~~~~L~~~GvDviT~-GNH~~Dkge~~~~i~~~~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~ 128 (266)
T TIGR00282 50 KIYEFLKQSGVNYITM-GNHTWFQKLILDVVINQKDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTN 128 (266)
T ss_pred HHHHHHHhcCCCEEEc-cchhccCcHHHHHHhccccccccCCCCCCCCCCCcEEEEECCEEEEEEECCCcccCCccccCC
Confidence 5788999998777777 8997651 3331 245677888866543 4222211 0
Q ss_pred ----------------------------CHHHHHHHHhhCCCCEEEECCccCeeEEE--E-CCEEEE-cCCCCCC
Q 032130 53 ----------------------------DLDSLAMLQRQLDVDILVTGHTHQFKAYK--H-EGGVVI-NPGSATG 95 (147)
Q Consensus 53 ----------------------------~~~~l~~~~~~~~~diii~GHtH~p~~~~--~-~~~~~i-NpGS~g~ 95 (147)
+......++-+.++|+|+.-|||.+-... . +++.|+ ..|-+|.
T Consensus 129 Pf~~~d~~i~~lk~~~d~IIVd~HaeatsEK~a~~~~ldg~vsaVvGtHtHV~TaD~~il~~gtayitD~Gm~G~ 203 (266)
T TIGR00282 129 PFKVLKELINMLKKDCDLIFVDFHAETTSEKNAFGMAFDGYVTAVVGTHTHVPTADLRILPKGTAYITDVGMTGP 203 (266)
T ss_pred HHHHHHHHHHhhhcCCCEEEEEeCCCCHHHHHHHHHHhCCCccEEEeCCCCCCCCcceeCCCCCEEEecCCcccC
Confidence 01122334446789999999999985432 2 455554 6776664
No 96
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=94.57 E-value=0.17 Score=39.24 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=36.0
Q ss_pred CCEEEEEEcCCCCCCC---CCHHHHHHHHhhCCCCEEEECCccCee-EEEECCEEEE-cCCCC
Q 032130 36 GQFKLGICHGHQVIPW---GDLDSLAMLQRQLDVDILVTGHTHQFK-AYKHEGGVVI-NPGSA 93 (147)
Q Consensus 36 ~g~~i~~~Hg~~~~~~---~~~~~l~~~~~~~~~diii~GHtH~p~-~~~~~~~~~i-NpGS~ 93 (147)
.+.-|+++|....... ..+..+...+.+.++|+||.+|.|... ++..++++++ ..|..
T Consensus 184 ~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~~~~I~YSLGNf 246 (250)
T PF09587_consen 184 ADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHPHVIQPVEIYKGKPIFYSLGNF 246 (250)
T ss_pred CCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccceEEECCEEEEEeCccc
Confidence 5677889997543222 223334444445789999999999864 4445666553 44443
No 97
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=94.41 E-value=0.44 Score=38.15 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.4
Q ss_pred HHHHHHHhhCCCCEEEECCccCee
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
+.+.+++++.+.++||=||.-.+.
T Consensus 223 ~~~~~Fl~~n~l~~iiR~He~~~~ 246 (293)
T cd07414 223 DVVAKFLNKHDLDLICRAHQVVED 246 (293)
T ss_pred HHHHHHHHHcCCeEEEECCccccC
Confidence 467888999999999999998753
No 98
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=94.34 E-value=0.41 Score=40.52 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=58.5
Q ss_pred HHHHHHhhCCCCEEEECCccCeeEEE------------------ECCEEEEcCCCCCCCCCCC-----------CCCCCC
Q 032130 56 SLAMLQRQLDVDILVTGHTHQFKAYK------------------HEGGVVINPGSATGAYSSF-----------TFDVNP 106 (147)
Q Consensus 56 ~l~~~~~~~~~diii~GHtH~p~~~~------------------~~~~~~iNpGS~g~p~~~~-----------~~~~~~ 106 (147)
.|++++-++++|+++.||-|...... ..+..+|.+|+.|+.-+.. -+....
T Consensus 323 ~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~~~~p~~Sa~R~~df 402 (452)
T KOG1378|consen 323 GLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFSSPQPEWSAFREGDF 402 (452)
T ss_pred HHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCcccCCCCcccccccccC
Confidence 47888888999999999999765311 1345788899999642111 122335
Q ss_pred eEEEEEEeCCE-EEEEEEEe-cCCeEeeeEEEEeecCcc
Q 032130 107 SFVLMDIDGLR-VVVYVYEL-IDGEVKVDKIDFKKTATT 143 (147)
Q Consensus 107 ~y~il~~~~~~-~~v~~~~~-~~~~~~~~~~~~~~~~~~ 143 (147)
.|.+|++.+++ ...+.++- +.......++++.|+...
T Consensus 403 G~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~~ 441 (452)
T KOG1378|consen 403 GYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYRD 441 (452)
T ss_pred CeEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccCc
Confidence 68899987754 45555555 333577777888776543
No 99
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=94.26 E-value=0.15 Score=41.08 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHhh-CCCCEEEECCccCee
Q 032130 38 FKLGICHGHQVIPWGDLDSLAMLQRQ-LDVDILVTGHTHQFK 78 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~~~~~~l~~~~~~-~~~diii~GHtH~p~ 78 (147)
.-|++.|.... +.+ .+++++ .++|+||.||+|...
T Consensus 210 ~II~LsH~g~~----~~d--~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 210 KIILLSHLQQI----SIE--QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred EEEEEeccccc----chH--HHHHhcCCCCCEEEeCCCCccC
Confidence 45777885321 111 234544 479999999999865
No 100
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=94.20 E-value=1.1 Score=36.83 Aligned_cols=69 Identities=16% Similarity=0.008 Sum_probs=41.6
Q ss_pred hCCCCEEEECCccCe-eEEEECC-EEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEEEE-EEEEecCCeEee
Q 032130 63 QLDVDILVTGHTHQF-KAYKHEG-GVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVV-YVYELIDGEVKV 132 (147)
Q Consensus 63 ~~~~diii~GHtH~p-~~~~~~~-~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~~v-~~~~~~~~~~~~ 132 (147)
..++..++|||-|.- +-...++ .+++=.|.+|.-.++ ..+-....=+++++..+-.+ ...++++...++
T Consensus 297 r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggYg-~~gw~Rr~Rv~e~d~~~~~IkTWKRl~d~~~~~ 368 (379)
T KOG1432|consen 297 RGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGYG-IGGWERRARVFELDLNKDRIKTWKRLDDKPLSV 368 (379)
T ss_pred ccCcceEEeccccccceecccCCeEEEEecCCCccCCcC-cCCcccceEEEEccccccccceeeecCCCCcce
Confidence 568999999999985 4445566 566678888865322 12222334455555444333 457777665544
No 101
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=94.16 E-value=0.17 Score=39.86 Aligned_cols=44 Identities=14% Similarity=-0.031 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCCC-----CCHHHHHHHHhhCC--CCEEEECCccCeeEEEE
Q 032130 39 KLGICHGHQVIPW-----GDLDSLAMLQRQLD--VDILVTGHTHQFKAYKH 82 (147)
Q Consensus 39 ~i~~~Hg~~~~~~-----~~~~~l~~~~~~~~--~diii~GHtH~p~~~~~ 82 (147)
-+++.|.++.... ...+.+.++++++. +..+++||+|.......
T Consensus 216 v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~~ 266 (296)
T cd00842 216 VWIIGHIPPGVNSYDTLENWSERYLQIINRYSDTIAGQFFGHTHRDEFRVF 266 (296)
T ss_pred EEEEeccCCCCcccccchHHHHHHHHHHHHHHHhhheeeecccccceEEEE
Confidence 3567776654322 12356777777765 56789999999766543
No 102
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=93.83 E-value=0.74 Score=37.40 Aligned_cols=25 Identities=8% Similarity=0.260 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCCCCEEEECCccCee
Q 032130 54 LDSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 54 ~~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
.+.+.++++..+.++||=||.-.+.
T Consensus 231 ~~~~~~Fl~~n~l~~IiR~Hq~v~~ 255 (320)
T PTZ00480 231 QEIVQVFLKKHELDLICRAHQVVED 255 (320)
T ss_pred HHHHHHHHHhCCCcEEEEcCccccC
Confidence 3567888999999999999998754
No 103
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=93.76 E-value=0.89 Score=36.63 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.4
Q ss_pred HHHHHHHhhCCCCEEEECCccCee
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
+.+.++++..+.++||=||.-.+.
T Consensus 216 ~~~~~Fl~~n~l~~iiR~He~~~~ 239 (303)
T PTZ00239 216 KVTKEFCRLNDLTLICRAHQLVME 239 (303)
T ss_pred HHHHHHHHHCCCcEEEEcChhhcc
Confidence 567888999999999999997753
No 104
>PHA03008 hypothetical protein; Provisional
Probab=93.51 E-value=0.28 Score=37.19 Aligned_cols=57 Identities=7% Similarity=-0.073 Sum_probs=40.6
Q ss_pred CCEEEEEEcCCCCC---CCCCHHHHHHHHhhCCCCEEEECC---ccCeeEEEECCEEEEcCCC
Q 032130 36 GQFKLGICHGHQVI---PWGDLDSLAMLQRQLDVDILVTGH---THQFKAYKHEGGVVINPGS 92 (147)
Q Consensus 36 ~g~~i~~~Hg~~~~---~~~~~~~l~~~~~~~~~diii~GH---tH~p~~~~~~~~~~iNpGS 92 (147)
.+..|+++||+|+. ...+.+.|.+...+.++.+-|+|| .-.|-+...++..++|..-
T Consensus 160 P~tDILITHgPP~GhLD~~vGC~~Ll~~I~rVKPKyHVFGh~~~~~~p~~~~y~di~f~nsni 222 (234)
T PHA03008 160 PKCDILITASPPFAILDDDLACGDLFSKVIKIKPKFHIFNGLTQFSHPNIFIYKDIIFINSNI 222 (234)
T ss_pred CCCCEEEeCCCCccccccccCcHHHHHHHHHhCCcEEEeCCccccCCCcEEEecceEEEeccc
Confidence 34679999999873 222445565555567899999999 2236666778899998743
No 105
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=93.42 E-value=0.24 Score=35.83 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=31.8
Q ss_pred CEEEEEEcCCCCCCC-------------CCHHHHHHHHhhCCCCEEEECCccC
Q 032130 37 QFKLGICHGHQVIPW-------------GDLDSLAMLQRQLDVDILVTGHTHQ 76 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~-------------~~~~~l~~~~~~~~~diii~GHtH~ 76 (147)
+..|+++|-+|.... ...+.++++++..++.+.+|||.|.
T Consensus 69 ~~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~ 121 (150)
T cd07380 69 GVDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGV 121 (150)
T ss_pred CCCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCc
Confidence 678999998885431 1345678889899999999999997
No 106
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=92.12 E-value=3.9 Score=32.64 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=21.3
Q ss_pred HHHHHHHHhhCCCCEEEECCccCeeE
Q 032130 54 LDSLAMLQRQLDVDILVTGHTHQFKA 79 (147)
Q Consensus 54 ~~~l~~~~~~~~~diii~GHtH~p~~ 79 (147)
.+.+.+++++.+.++||=||.-.+.-
T Consensus 214 ~~~~~~Fl~~n~l~~iiR~He~~~~G 239 (285)
T cd07415 214 QDVVEEFNHNNGLTLICRAHQLVMEG 239 (285)
T ss_pred HHHHHHHHHHCCCeEEEEcCccccce
Confidence 35678889999999999999977543
No 107
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=91.37 E-value=3.1 Score=33.42 Aligned_cols=95 Identities=19% Similarity=0.312 Sum_probs=55.0
Q ss_pred CCEEEEEEcCCCCCCC--CC----HHHHHHHHhhCCCCEEEECCccCee-EEE-ECCEEEEcCCCCCCCCCCCCC--CCC
Q 032130 36 GQFKLGICHGHQVIPW--GD----LDSLAMLQRQLDVDILVTGHTHQFK-AYK-HEGGVVINPGSATGAYSSFTF--DVN 105 (147)
Q Consensus 36 ~g~~i~~~Hg~~~~~~--~~----~~~l~~~~~~~~~diii~GHtH~p~-~~~-~~~~~~iNpGS~g~p~~~~~~--~~~ 105 (147)
+..+|++=|+..-+.. +. .++|..++++.++|+-++||.|... +.. ..+.-++-.|.......+.+- .-.
T Consensus 208 a~wkiVvGHh~i~S~~~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g~~~~~~~~ 287 (336)
T KOG2679|consen 208 AKWKIVVGHHPIKSAGHHGPTKELEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRGTDHNPEVN 287 (336)
T ss_pred cceEEEecccceehhhccCChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccCCCccCCccC
Confidence 4556777676543221 11 2467788899999999999999753 333 345667766665544211000 111
Q ss_pred ----------CeEEEEEEeCCEEEEEEEEecCCeE
Q 032130 106 ----------PSFVLMDIDGLRVVVYVYELIDGEV 130 (147)
Q Consensus 106 ----------~~y~il~~~~~~~~v~~~~~~~~~~ 130 (147)
-.|+-+++...+.++.+|...+..+
T Consensus 288 p~~lkF~YdgqGfmsv~is~~e~~vvfyD~~G~~L 322 (336)
T KOG2679|consen 288 PKELKFYYDGQGFMSVEISHSEARVVFYDVSGKVL 322 (336)
T ss_pred hhheEEeeCCCceEEEEEecceeEEEEEeccCceE
Confidence 2455666666666666666665443
No 108
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=91.24 E-value=3.9 Score=32.93 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=19.1
Q ss_pred HHHHHHHhhCCCCEEEECCccCe
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQF 77 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p 77 (147)
+.+.++++..+.++||=||.-..
T Consensus 223 ~~~~~Fl~~n~l~~iiR~He~~~ 245 (305)
T cd07416 223 RAVCEFLQKNNLLSIIRAHEAQD 245 (305)
T ss_pred HHHHHHHHHcCCeEEEEeccccc
Confidence 34677888999999999999765
No 109
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=90.96 E-value=3.7 Score=32.91 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.5
Q ss_pred HHHHHHHhhCCCCEEEECCccCee
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
+.+.+++++.+.++||=||.-.+.
T Consensus 225 ~~~~~Fl~~n~l~~iiR~Hq~~~~ 248 (294)
T PTZ00244 225 DIVNDFLDMVDMDLIVRAHQVMER 248 (294)
T ss_pred HHHHHHHHHcCCcEEEEcCccccC
Confidence 467888999999999999998754
No 110
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=90.96 E-value=1.9 Score=36.90 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=19.2
Q ss_pred HHHHHHhhC-CCCEEEECCccCeeEE
Q 032130 56 SLAMLQRQL-DVDILVTGHTHQFKAY 80 (147)
Q Consensus 56 ~l~~~~~~~-~~diii~GHtH~p~~~ 80 (147)
++..+++.+ ++-.+||||.|+..+.
T Consensus 389 eLlaLL~~hPnVla~LsGHvHrn~v~ 414 (492)
T TIGR03768 389 GLVTTLQKYPNLLMWIAGHRHLNTVK 414 (492)
T ss_pred HHHHHHhcCCCeEEEEcCCccccccc
Confidence 566777665 5778999999987764
No 111
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=90.59 E-value=0.22 Score=42.61 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=24.2
Q ss_pred CCEEEECCccCeeEE-----EECCEEEEcCCCCCC
Q 032130 66 VDILVTGHTHQFKAY-----KHEGGVVINPGSATG 95 (147)
Q Consensus 66 ~diii~GHtH~p~~~-----~~~~~~~iNpGS~g~ 95 (147)
.|+|+.||+|..+.. ..++++++.+|+.|.
T Consensus 236 iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag~~gk 270 (517)
T COG0737 236 IDLIIGGHSHTVFPGGDKPGTVNGTPIVQAGEYGK 270 (517)
T ss_pred cceEeccCCcccccCCcccCccCCEEEEccChhhC
Confidence 999999999964322 246899999999996
No 112
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=88.75 E-value=0.67 Score=38.51 Aligned_cols=21 Identities=10% Similarity=0.298 Sum_probs=17.8
Q ss_pred HHHHHHHhhCCCCEEEECCcc
Q 032130 55 DSLAMLQRQLDVDILVTGHTH 75 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH 75 (147)
+.+.+++++.+.++||=||.=
T Consensus 274 ~~~~~FL~~n~l~~IIRsHe~ 294 (377)
T cd07418 274 DCTEEFLEKNNLKLIIRSHEG 294 (377)
T ss_pred HHHHHHHHHcCCcEEEECCCC
Confidence 456778889999999999993
No 113
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=88.63 E-value=0.95 Score=36.78 Aligned_cols=56 Identities=25% Similarity=0.399 Sum_probs=35.5
Q ss_pred cHhHHHHhhC---C-CeEEEeCCCCCCC-------------------------------CCCceEEEEECCEEEEEEcCC
Q 032130 2 EVHDYLKSLC---P-DLHVTRGEYDEDS-------------------------------RYPETKTLTIGQFKLGICHGH 46 (147)
Q Consensus 2 e~l~~l~~~~---~-~~~~V~GN~D~~~-------------------------------~lP~~~~~~~~g~~i~~~Hg~ 46 (147)
|++.+|.++. + .++.++|||+... .+|....+ +.+|+++||.
T Consensus 97 Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaaii---~~~i~cvHGG 173 (321)
T cd07420 97 EILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATII---DNKILVVHGG 173 (321)
T ss_pred HHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceEEE---cCCEEEEeCC
Confidence 5677666553 3 5888999998752 34544433 3569999998
Q ss_pred CCCCCCCHHHHHHHH
Q 032130 47 QVIPWGDLDSLAMLQ 61 (147)
Q Consensus 47 ~~~~~~~~~~l~~~~ 61 (147)
.. +..+.+.+.++-
T Consensus 174 i~-~~~~l~~i~~i~ 187 (321)
T cd07420 174 IS-DSTDLDLLDKID 187 (321)
T ss_pred CC-CccCHHHHHhhh
Confidence 75 344555554443
No 114
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=87.80 E-value=0.75 Score=37.09 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=16.8
Q ss_pred cHhHHHHhhC----CCeEEEeCCCCCC
Q 032130 2 EVHDYLKSLC----PDLHVTRGEYDED 24 (147)
Q Consensus 2 e~l~~l~~~~----~~~~~V~GN~D~~ 24 (147)
|++..|.++. .+++.++||||..
T Consensus 101 evl~ll~~lk~~~p~~v~lLRGNHE~~ 127 (311)
T cd07419 101 ETICLLLALKVKYPNQIHLIRGNHEDR 127 (311)
T ss_pred HHHHHHHHhhhcCCCcEEEeccccchH
Confidence 5677776654 2678999999964
No 115
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=87.25 E-value=4.4 Score=31.59 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=23.2
Q ss_pred CCeEEEeCCCCCCCC--------------C---------CceEEEEECCEEEEEEcC
Q 032130 12 PDLHVTRGEYDEDSR--------------Y---------PETKTLTIGQFKLGICHG 45 (147)
Q Consensus 12 ~~~~~V~GN~D~~~~--------------l---------P~~~~~~~~g~~i~~~Hg 45 (147)
.++++++||||.... . +....+++++.+|++.-.
T Consensus 69 ~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds 125 (294)
T cd00839 69 VPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLST 125 (294)
T ss_pred CCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEec
Confidence 468999999997520 0 112467888888887754
No 116
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=85.92 E-value=6.7 Score=30.99 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=27.4
Q ss_pred HhHHHHhhCCCeEEEeCCCCCCC----------------------------CCCceEEEEECCEEEEEE
Q 032130 3 VHDYLKSLCPDLHVTRGEYDEDS----------------------------RYPETKTLTIGQFKLGIC 43 (147)
Q Consensus 3 ~l~~l~~~~~~~~~V~GN~D~~~----------------------------~lP~~~~~~~~g~~i~~~ 43 (147)
+++.|++++-++. +.||||++. .++....++.+|.||.++
T Consensus 67 ~~~~~n~~g~Da~-~~GNHEfD~G~~~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgvi 134 (285)
T cd07405 67 DFRGMNLVGYDAM-AVGNHEFDNPLEVLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVI 134 (285)
T ss_pred HHHHHHhhCCcEE-eecccccccCHHHHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEE
Confidence 4677888885444 559999872 122345678899998876
No 117
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=81.57 E-value=4.2 Score=34.02 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=40.0
Q ss_pred CCCEEEECCccCeeEEEECCEEEEcCCCCCC-CCCCCCCCCCCeEEEEEEeCCE-EEEEEEEecC
Q 032130 65 DVDILVTGHTHQFKAYKHEGGVVINPGSATG-AYSSFTFDVNPSFVLMDIDGLR-VVVYVYELID 127 (147)
Q Consensus 65 ~~diii~GHtH~p~~~~~~~~~~iNpGS~g~-p~~~~~~~~~~~y~il~~~~~~-~~v~~~~~~~ 127 (147)
.+|++..||.|.|... .+...+.=+||.-. .++ ..+...++.+++++.++ +.++...+..
T Consensus 220 ~~dYvALGHlH~~Q~v-~~~~~vrYsGSpl~~sFs--E~~~~K~v~lVel~~~~~~~v~~i~l~~ 281 (407)
T PRK10966 220 PADYIALGHIHRAQKV-GGTEHIRYSGSPIPLSFD--ELGKSKSVHLVEFDQGKLQSVTPLPVPV 281 (407)
T ss_pred ccCeeeccccccCcCC-CCCCcEEEcCCCCCCCcc--ccCCCCeEEEEEEcCCccceEEEEECCC
Confidence 4789999999999653 22334667898653 222 23345889999997654 5677766653
No 118
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=79.40 E-value=4 Score=32.15 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=33.2
Q ss_pred CCEEEEEEcCCCCCCC-----------------------CCHHHHHHHHhhCCCCEEEECCccCeeE
Q 032130 36 GQFKLGICHGHQVIPW-----------------------GDLDSLAMLQRQLDVDILVTGHTHQFKA 79 (147)
Q Consensus 36 ~g~~i~~~Hg~~~~~~-----------------------~~~~~l~~~~~~~~~diii~GHtH~p~~ 79 (147)
.+..|+++|-+|.... .....+..+++..++.+-++||.|..+.
T Consensus 164 ~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f~ 230 (262)
T cd00844 164 QPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKFA 230 (262)
T ss_pred CCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCcccc
Confidence 3678999998876321 1234567888899999999999998655
No 119
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=79.37 E-value=1.6 Score=36.60 Aligned_cols=21 Identities=24% Similarity=0.077 Sum_probs=15.6
Q ss_pred hHHHHhhCCCeEEEeCCCCCC
Q 032130 4 HDYLKSLCPDLHVTRGEYDED 24 (147)
Q Consensus 4 l~~l~~~~~~~~~V~GN~D~~ 24 (147)
+..|.+.+.++++|.||||..
T Consensus 67 l~~L~~~~~~v~~I~GNHD~~ 87 (407)
T PRK10966 67 VVNLQQTGCQLVVLAGNHDSV 87 (407)
T ss_pred HHHHHhcCCcEEEEcCCCCCh
Confidence 344555555799999999976
No 120
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.54 E-value=1.7 Score=33.88 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=14.8
Q ss_pred hHHHHhhC-CCeEEEeCCCCCC
Q 032130 4 HDYLKSLC-PDLHVTRGEYDED 24 (147)
Q Consensus 4 l~~l~~~~-~~~~~V~GN~D~~ 24 (147)
+..|.+.+ .+++++.||||..
T Consensus 67 l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 67 FRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred HHHHHhcCCceEEEEccCCCCh
Confidence 33444444 4689999999986
No 121
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=76.97 E-value=2.4 Score=32.43 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=14.5
Q ss_pred hHHHHhh-CCCeEEEeCCCCCC
Q 032130 4 HDYLKSL-CPDLHVTRGEYDED 24 (147)
Q Consensus 4 l~~l~~~-~~~~~~V~GN~D~~ 24 (147)
++.+.++ ..++++|+||||.+
T Consensus 53 ~~~l~~~~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 53 IEKLQELKGIKVTFNAGNHDML 74 (239)
T ss_pred HHHHHHhcCCcEEEECCCCCCC
Confidence 4445542 24689999999975
No 122
>PLN02533 probable purple acid phosphatase
Probab=74.24 E-value=28 Score=29.36 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=22.9
Q ss_pred CCeEEEeCCCCCCC----------------CCCc---------eEEEEECCEEEEEEcC
Q 032130 12 PDLHVTRGEYDEDS----------------RYPE---------TKTLTIGQFKLGICHG 45 (147)
Q Consensus 12 ~~~~~V~GN~D~~~----------------~lP~---------~~~~~~~g~~i~~~Hg 45 (147)
.++..++||||... .+|. -.+++.++..|++.=.
T Consensus 199 ~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds 257 (427)
T PLN02533 199 RPWMVTHGNHELEKIPILHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGS 257 (427)
T ss_pred CceEEeCccccccccccccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeC
Confidence 36899999999631 2231 3457888888777643
No 123
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=71.26 E-value=12 Score=29.14 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=16.3
Q ss_pred HhHHHHhhCCCeEEEeCCCCCC
Q 032130 3 VHDYLKSLCPDLHVTRGEYDED 24 (147)
Q Consensus 3 ~l~~l~~~~~~~~~V~GN~D~~ 24 (147)
+++.|+.++.+ +++.||||..
T Consensus 75 ~~~~ln~~g~d-~~~lGNHe~d 95 (277)
T cd07410 75 MIAAMNALGYD-AGTLGNHEFN 95 (277)
T ss_pred HHHHHHhcCCC-EEeecccCcc
Confidence 57888888864 5667999976
No 124
>PHA02239 putative protein phosphatase
Probab=70.85 E-value=3.3 Score=32.05 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=17.9
Q ss_pred CCEEEECCccCee--EEEECCEEEEcCCCCC
Q 032130 66 VDILVTGHTHQFK--AYKHEGGVVINPGSAT 94 (147)
Q Consensus 66 ~diii~GHtH~p~--~~~~~~~~~iNpGS~g 94 (147)
-.+||+|||-... ....++.+-|..|++-
T Consensus 191 g~~vV~GHTp~~~~~~~~~~~~I~IDtGa~~ 221 (235)
T PHA02239 191 GFTYVCGHTPTDSGEVEINGDMLMCDVGAVF 221 (235)
T ss_pred CcEEEECCCCCCCCcccccCCEEEeecCccc
Confidence 3489999996532 3333455667777653
No 125
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=69.75 E-value=11 Score=32.68 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=15.5
Q ss_pred HhHHHHhhCCCeEEEeCCCCCC
Q 032130 3 VHDYLKSLCPDLHVTRGEYDED 24 (147)
Q Consensus 3 ~l~~l~~~~~~~~~V~GN~D~~ 24 (147)
+++.+++++.++ ++.||||++
T Consensus 101 ~i~~mN~~g~Da-~tlGNHEFD 121 (551)
T PRK09558 101 DFRGMNLIGYDA-MAVGNHEFD 121 (551)
T ss_pred hHHHHhcCCCCE-EcccccccC
Confidence 467788888644 455999987
No 126
>PRK09982 universal stress protein UspD; Provisional
Probab=68.20 E-value=5.9 Score=27.53 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccC
Q 032130 38 FKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQ 76 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~ 76 (147)
..+.+..|++ .+.+.+.+++.++|+||.|| |.
T Consensus 82 ~~~~v~~G~p------~~~I~~~A~~~~aDLIVmG~-~~ 113 (142)
T PRK09982 82 TKLRIERGEM------PETLLEIMQKEQCDLLVCGH-HH 113 (142)
T ss_pred ceEEEEecCH------HHHHHHHHHHcCCCEEEEeC-Ch
Confidence 3445555643 35777889999999999997 64
No 127
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=67.24 E-value=25 Score=27.63 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=24.5
Q ss_pred CeEEEeCCCCCCC---CCC-------------ceEEEEECCEEEEEEcCCC
Q 032130 13 DLHVTRGEYDEDS---RYP-------------ETKTLTIGQFKLGICHGHQ 47 (147)
Q Consensus 13 ~~~~V~GN~D~~~---~lP-------------~~~~~~~~g~~i~~~Hg~~ 47 (147)
.+++|.||||... .+| ....++++|.+|...=|..
T Consensus 75 ~t~fi~GNHE~~~~l~~l~~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~ 125 (262)
T cd00844 75 LTIFIGGNHEASNYLWELPYGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIY 125 (262)
T ss_pred eEEEECCCCCCHHHHHhhcCCCeecCcEEEecCCCEEEECCeEEEEecccc
Confidence 4689999999742 122 2356778999999887733
No 128
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=66.37 E-value=20 Score=27.29 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=16.2
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCC
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDED 24 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~ 24 (147)
.+++.|++++. .+++.||||..
T Consensus 61 ~~~~~l~~~g~-d~~~~GNHe~d 82 (252)
T cd00845 61 ANIELMNALGY-DAVTIGNHEFD 82 (252)
T ss_pred HHHHHHHhcCC-CEEeecccccc
Confidence 36777888875 45667999976
No 129
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=65.73 E-value=4.6 Score=32.65 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=18.8
Q ss_pred CCEEEECCccCeeEEEECCEEEEcCCCCC
Q 032130 66 VDILVTGHTHQFKAYKHEGGVVINPGSAT 94 (147)
Q Consensus 66 ~diii~GHtH~p~~~~~~~~~~iNpGS~g 94 (147)
.-+||+|||-.| ...++.+.|..|..-
T Consensus 255 ~~~VVhGHt~~~--~~~~~Ri~iDtGa~~ 281 (304)
T cd07421 255 KTIVVSGHHGKL--HIDGLRLIIDEGGGF 281 (304)
T ss_pred CeEEEECCCCCc--eecCCEEEEECCCCc
Confidence 348999999444 345777888887654
No 130
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=65.19 E-value=2.8 Score=30.66 Aligned_cols=68 Identities=7% Similarity=-0.034 Sum_probs=36.6
Q ss_pred HHHHhhCCCeEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECC
Q 032130 5 DYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 73 (147)
Q Consensus 5 ~~l~~~~~~~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GH 73 (147)
+.....+.+++.+-|.-+.-...-..+.-.+.+.+|..+|..+++ ....+.+.+.+.+.++|+|+.|=
T Consensus 42 ~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 42 RRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFD-EEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred HHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC-hhhHHHHHHHHHHcCCCEEEEEC
Confidence 333333334555554443221222223335566777776655542 23445666677778999998873
No 131
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=64.84 E-value=13 Score=31.88 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCCEEEECCccCeeEE-EECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCE
Q 032130 65 DVDILVTGHTHQFKAY-KHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLR 117 (147)
Q Consensus 65 ~~diii~GHtH~p~~~-~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~ 117 (147)
=+|+++.+-+-.++.. ...|..++||||.... ..+|-+.--...+
T Consensus 472 lPdlmvl~Ds~~sf~~vt~~gC~v~NPGSF~~s--------~~~f~vy~P~~k~ 517 (525)
T KOG3818|consen 472 LPDLMVLADSFSSFFDVTYAGCIVINPGSFSRS--------NYTFKVYYPSQKT 517 (525)
T ss_pred CcceEEeecccccccccccCCceeeCCCccccc--------ceeEEEEecccce
Confidence 3677888888877665 5689999999999863 4667666554444
No 132
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=63.71 E-value=16 Score=28.25 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=15.7
Q ss_pred HhHHHHhhCCCeEEEeCCCCCC
Q 032130 3 VHDYLKSLCPDLHVTRGEYDED 24 (147)
Q Consensus 3 ~l~~l~~~~~~~~~V~GN~D~~ 24 (147)
+++.|++++.++ .+.||||+.
T Consensus 62 ~~~~ln~~g~d~-~~~GNHefd 82 (257)
T cd07408 62 IIKIMNAVGYDA-VTPGNHEFD 82 (257)
T ss_pred HHHHHHhcCCcE-Ecccccccc
Confidence 567788887545 567999986
No 133
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=63.33 E-value=2.9 Score=33.25 Aligned_cols=32 Identities=28% Similarity=0.261 Sum_probs=24.6
Q ss_pred HhhCCCCEEEECCccCeeEEE------ECCEEEEcCCC
Q 032130 61 QRQLDVDILVTGHTHQFKAYK------HEGGVVINPGS 92 (147)
Q Consensus 61 ~~~~~~diii~GHtH~p~~~~------~~~~~~iNpGS 92 (147)
+...++|.+|.|.||.|.... .+.+.+|.||.
T Consensus 173 ~~~~~~DtlVLGCTHyPll~~~i~~~~~~~v~lids~~ 210 (269)
T COG0796 173 LQEAGPDTLVLGCTHYPLLKPEIQQVLGEHVALIDSGA 210 (269)
T ss_pred hhccCCCEEEEeCcCcHHHHHHHHHHhCCCceEeCCHH
Confidence 344579999999999998643 24588999994
No 134
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=60.80 E-value=4 Score=31.86 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=24.6
Q ss_pred hCCCCEEEECCccCeeEEEE------CCEEEEcCCCCCC
Q 032130 63 QLDVDILVTGHTHQFKAYKH------EGGVVINPGSATG 95 (147)
Q Consensus 63 ~~~~diii~GHtH~p~~~~~------~~~~~iNpGS~g~ 95 (147)
+.++|.+|.|.||.|..... ....+|+|+....
T Consensus 170 ~~~~d~lILGCTh~P~l~~~i~~~~~~~v~~IDp~~~la 208 (251)
T TIGR00067 170 DTLPDTVVLGCTHFPLLKEEIEQYLPEHVRLVDSGVHTA 208 (251)
T ss_pred cCCCCEEEECcCChHHHHHHHHHHcCCCcEEECCHHHHH
Confidence 45899999999999986421 3457889976543
No 135
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=60.16 E-value=19 Score=27.41 Aligned_cols=43 Identities=21% Similarity=0.139 Sum_probs=30.8
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCCC----------------------C-----CCceEEEEECCEEEEEEc
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDEDS----------------------R-----YPETKTLTIGQFKLGICH 44 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~~----------------------~-----lP~~~~~~~~g~~i~~~H 44 (147)
++++.|++++.++..+.+||+.+. . ......++.+|.+|.++=
T Consensus 68 ~~~~~L~~~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig 137 (239)
T cd07381 68 EVADALKAAGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLA 137 (239)
T ss_pred HHHHHHHHhCCCEEEcccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEE
Confidence 578899999877777777998761 1 123456788999877654
No 136
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=58.55 E-value=43 Score=26.52 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=52.2
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCC-----------------CCCCc------eEEEEECCEEEEEEc--CCCCCCC--CCH
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDED-----------------SRYPE------TKTLTIGQFKLGICH--GHQVIPW--GDL 54 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~-----------------~~lP~------~~~~~~~g~~i~~~H--g~~~~~~--~~~ 54 (147)
+.+..|.+.+. -+.-.|||=++ ..+|. ...++..|.++.++- |..+.++ .++
T Consensus 50 k~y~~l~~~G~-dviT~GNH~wd~~ei~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~P 128 (266)
T COG1692 50 KIYKELLEAGA-DVITLGNHTWDQKEILDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNP 128 (266)
T ss_pred HHHHHHHHhCC-CEEecccccccchHHHHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCH
Confidence 34566777774 35678999443 14443 356788899888876 4333221 000
Q ss_pred ----H---------------------HHHH----HHhhCCCCEEEECCccCeeEEEE---CCEEE-EcCCCCCC
Q 032130 55 ----D---------------------SLAM----LQRQLDVDILVTGHTHQFKAYKH---EGGVV-INPGSATG 95 (147)
Q Consensus 55 ----~---------------------~l~~----~~~~~~~diii~GHtH~p~~~~~---~~~~~-iNpGS~g~ 95 (147)
+ .-++ +.-+..+..|+--|||.|-...+ +|+-| =..|-+|.
T Consensus 129 F~~~d~l~~~~~~~~~~iiVDFHAEtTSEK~a~g~yldGrvsavvGTHTHV~TaD~rIL~~GTayiTDvGMtG~ 202 (266)
T COG1692 129 FKAADKLLDEIKLGTDLIIVDFHAETTSEKNAFGWYLDGRVSAVVGTHTHVPTADERILPKGTAYITDVGMTGP 202 (266)
T ss_pred HHHHHHHHHhCccCCceEEEEccccchhhhhhhheEEcCeEEEEEeccCccccccceecCCCcEEEecCccccc
Confidence 0 0111 11234677899999999864321 34444 45665553
No 137
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=58.28 E-value=21 Score=27.19 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=18.8
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCC
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDED 24 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~ 24 (147)
++++.|++++.++..+.+||+.+
T Consensus 64 ~~~~~l~~~G~d~~~laNNH~fD 86 (239)
T smart00854 64 ENAAALKAAGFDVVSLANNHSLD 86 (239)
T ss_pred HHHHHHHHhCCCEEEeccCcccc
Confidence 57889999987777777799876
No 138
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=56.24 E-value=16 Score=28.84 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=27.7
Q ss_pred EECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEEC
Q 032130 34 TIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTG 72 (147)
Q Consensus 34 ~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~G 72 (147)
.+.+.+|..+|...+.+... +.+.+.+.+.++|+++.|
T Consensus 131 ~~p~l~ivg~h~GYf~~~e~-~~i~~~I~~s~pdil~Vg 168 (253)
T COG1922 131 KYPGLKIVGSHDGYFDPEEE-EAIVERIAASGPDILLVG 168 (253)
T ss_pred HCCCceEEEecCCCCChhhH-HHHHHHHHhcCCCEEEEe
Confidence 45567888888666655444 567777778899999988
No 139
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=55.96 E-value=13 Score=29.67 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=18.3
Q ss_pred cHhHHHHhhC----CCeEEEeCCCCCC
Q 032130 2 EVHDYLKSLC----PDLHVTRGEYDED 24 (147)
Q Consensus 2 e~l~~l~~~~----~~~~~V~GN~D~~ 24 (147)
|++.+|-++. .++.+++|||+..
T Consensus 105 etVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 105 ETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred HHHHHHHHhhccccceeEEecCchHHH
Confidence 5677777776 5789999999864
No 140
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.61 E-value=4.9 Score=31.22 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=22.4
Q ss_pred CCCEEEECCccCeeEEEECCEEEEcCCCCCC
Q 032130 65 DVDILVTGHTHQFKAYKHEGGVVINPGSATG 95 (147)
Q Consensus 65 ~~diii~GHtH~p~~~~~~~~~~iNpGS~g~ 95 (147)
++|++..||.|.+... .++..+.=|||+-.
T Consensus 213 ~~dYvALGHiH~~q~~-~~~~~i~YsGSp~~ 242 (253)
T TIGR00619 213 EADYVALGHHHIHKIS-KGRERVRYSGSPFP 242 (253)
T ss_pred ccchhhcccccccccc-CCCCCEEECCCCcc
Confidence 5799999999997543 34556778999764
No 141
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=55.16 E-value=15 Score=26.53 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCCCC----------CCHH----HHHHHHhhCCCCEEEECCccCeeE-------EEECCEEEEcCCCCCC
Q 032130 38 FKLGICHGHQVIPW----------GDLD----SLAMLQRQLDVDILVTGHTHQFKA-------YKHEGGVVINPGSATG 95 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~----------~~~~----~l~~~~~~~~~diii~GHtH~p~~-------~~~~~~~~iNpGS~g~ 95 (147)
.+|++.||+-.+-- .+.+ .+.+.+++.+.++-++=--|.-.. ...-+.++||||..+-
T Consensus 2 ~~ilvinGPNLN~LG~REp~iYG~~tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~TH 80 (146)
T PRK13015 2 GKILVLNGPNLNLLGTREPAIYGHETLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTH 80 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhh
Confidence 46999999876421 1222 345566667788877766664321 1123679999999884
No 142
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=52.71 E-value=4.5 Score=29.57 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=25.1
Q ss_pred EEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEEC
Q 032130 32 TLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTG 72 (147)
Q Consensus 32 ~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~G 72 (147)
.-.+.+.+|..+|..++.+. ..+.+.+.+.+.++|+|+.|
T Consensus 67 ~~~yp~l~i~g~~~g~~~~~-~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 67 RARYPGLKIVGYHHGYFGPE-EEEEIIERINASGADILFVG 106 (171)
T ss_pred HHHCCCcEEEEecCCCCChh-hHHHHHHHHHHcCCCEEEEE
Confidence 33566777777665544332 22335666777889999887
No 143
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=52.19 E-value=8.1 Score=29.83 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=11.7
Q ss_pred CCCeEEEeCCCCCC
Q 032130 11 CPDLHVTRGEYDED 24 (147)
Q Consensus 11 ~~~~~~V~GN~D~~ 24 (147)
..++++++||||..
T Consensus 70 ~~P~~~v~GNHD~~ 83 (277)
T cd07378 70 QVPWYLVLGNHDYS 83 (277)
T ss_pred cCCeEEecCCcccC
Confidence 34799999999975
No 144
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=50.92 E-value=84 Score=25.49 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=16.1
Q ss_pred cHhHHHHhhCC-----CeEEEeCCCCC
Q 032130 2 EVHDYLKSLCP-----DLHVTRGEYDE 23 (147)
Q Consensus 2 e~l~~l~~~~~-----~~~~V~GN~D~ 23 (147)
++++.|.++.. ++++++||||.
T Consensus 53 eVld~L~~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 53 KVIDFLISLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred HHHHHHHHhhhcccccceEEEecCChH
Confidence 56777776542 47899999994
No 145
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=50.30 E-value=8.3 Score=27.68 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCCCCC----------CH----HHHHHHHhhCCCCEEEECCccCeeE-------EEECCEEEEcCCCCCC
Q 032130 38 FKLGICHGHQVIPWG----------DL----DSLAMLQRQLDVDILVTGHTHQFKA-------YKHEGGVVINPGSATG 95 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~~----------~~----~~l~~~~~~~~~diii~GHtH~p~~-------~~~~~~~~iNpGS~g~ 95 (147)
++|++.||+-.+--. +. +.+.+.+++.+.++-++=--|.-.. ...-+.++||||..+-
T Consensus 1 m~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~th 79 (140)
T PF01220_consen 1 MKILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTH 79 (140)
T ss_dssp EEEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGH
T ss_pred CEEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhcc
Confidence 589999998764321 11 2345566677777777665554321 1124789999999874
No 146
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=50.01 E-value=25 Score=25.40 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCCCC----------CCHH----HHHHHHhhCCCCEEEECCccCeeE-------EEECCEEEEcCCCCCC
Q 032130 38 FKLGICHGHQVIPW----------GDLD----SLAMLQRQLDVDILVTGHTHQFKA-------YKHEGGVVINPGSATG 95 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~----------~~~~----~l~~~~~~~~~diii~GHtH~p~~-------~~~~~~~~iNpGS~g~ 95 (147)
.+|++.||+-.+-- .+.+ .+.+.+++.+.++-++=--|.-.. ...-+.++||||..+-
T Consensus 2 ~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~TH 80 (146)
T PRK05395 2 MKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTH 80 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHH
Confidence 46999999876421 1222 345556666777777665554221 1123679999999883
No 147
>PRK15005 universal stress protein F; Provisional
Probab=49.01 E-value=33 Score=23.25 Aligned_cols=31 Identities=16% Similarity=0.433 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccC
Q 032130 39 KLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQ 76 (147)
Q Consensus 39 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~ 76 (147)
.+.+.+|.+ .+.+.+.+++.++|+||.|. |.
T Consensus 87 ~~~v~~G~p------~~~I~~~a~~~~~DLIV~Gs-~~ 117 (144)
T PRK15005 87 HVHVEEGSP------KDRILELAKKIPADMIIIAS-HR 117 (144)
T ss_pred EEEEeCCCH------HHHHHHHHHHcCCCEEEEeC-CC
Confidence 556667653 25677788889999999994 44
No 148
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=48.26 E-value=26 Score=25.18 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCCC----------CCHH----HHHHHHhhCCCCEEEECCccCeeE-------EEECCEEEEcCCCCCC
Q 032130 39 KLGICHGHQVIPW----------GDLD----SLAMLQRQLDVDILVTGHTHQFKA-------YKHEGGVVINPGSATG 95 (147)
Q Consensus 39 ~i~~~Hg~~~~~~----------~~~~----~l~~~~~~~~~diii~GHtH~p~~-------~~~~~~~~iNpGS~g~ 95 (147)
+|++.||+-.+-- .+.+ .+.+.+++.+.++-++=--|.-.. ...-+.++||||..+-
T Consensus 1 ~ilvlnGPNLNlLG~REp~iYG~~tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~TH 78 (141)
T TIGR01088 1 KILVLNGPNLNMLGLREPGVYGSQTLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTH 78 (141)
T ss_pred CEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhh
Confidence 5889999776421 1222 345556666777777666554321 1123679999999883
No 149
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=48.10 E-value=1.4e+02 Score=23.65 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=48.5
Q ss_pred cHhHHHHhhCCCeEEEeCCCCCC-----------------CCCCc------eEEEEECCEEEEEEc--CCCCCCCCC---
Q 032130 2 EVHDYLKSLCPDLHVTRGEYDED-----------------SRYPE------TKTLTIGQFKLGICH--GHQVIPWGD--- 53 (147)
Q Consensus 2 e~l~~l~~~~~~~~~V~GN~D~~-----------------~~lP~------~~~~~~~g~~i~~~H--g~~~~~~~~--- 53 (147)
+.+++|.+.+. -..-.|||=++ ..+|. ...++.+|.++.++- |-.+.+..+
T Consensus 47 ~~~~~L~~~Gv-DviT~GNH~wdkkei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF 125 (253)
T PF13277_consen 47 KIAEELFKAGV-DVITMGNHIWDKKEIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPF 125 (253)
T ss_dssp HHHHHHHHHT--SEEE--TTTTSSTTHHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HH
T ss_pred HHHHHHHhcCC-CEEecCcccccCcHHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChH
Confidence 35677888874 35678999443 14554 367788999988876 433322110
Q ss_pred ---------------------------HHHHHHHHhhCCCCEEEECCccCeeEEE--E-CCEEEE-cCCCCCC
Q 032130 54 ---------------------------LDSLAMLQRQLDVDILVTGHTHQFKAYK--H-EGGVVI-NPGSATG 95 (147)
Q Consensus 54 ---------------------------~~~l~~~~~~~~~diii~GHtH~p~~~~--~-~~~~~i-NpGS~g~ 95 (147)
......+.-+..+..|+--|||.|-... . +++.|| ..|-+|.
T Consensus 126 ~~~d~~l~~l~~~~~~iiVDFHAEaTSEK~A~g~~lDGrvsaV~GTHTHVqTaDerILp~GTaYiTDvGMtG~ 198 (253)
T PF13277_consen 126 RAADRLLEELKEETDIIIVDFHAEATSEKQAMGWYLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTGP 198 (253)
T ss_dssp HHHHHHHHH-----SEEEEEEE-S-HHHHHHHHHHHBTTBSEEEEESSSS-BS--EE-TTS-EEES---EBEE
T ss_pred HHHHHHHHhccccCCEEEEEeecCcHHHHHHHHHHhCCcEEEEEeCCCCccCchhhccCCCCEEEecCccccC
Confidence 0112223445689999999999986433 2 466665 5665554
No 150
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=47.51 E-value=25 Score=21.90 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.1
Q ss_pred HHHHHHHHhhCCCCEEEECCccCeeE
Q 032130 54 LDSLAMLQRQLDVDILVTGHTHQFKA 79 (147)
Q Consensus 54 ~~~l~~~~~~~~~diii~GHtH~p~~ 79 (147)
.+.+.+.+++.+++.|+.||+-....
T Consensus 37 ~~~~~~~a~~~~~~~Iv~G~~~~d~~ 62 (86)
T cd01984 37 VRILKRLAAEEGADVIILGHNADDVA 62 (86)
T ss_pred HHHHHHHHHHcCCCEEEEcCCchhhh
Confidence 34567778889999999999865443
No 151
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=45.77 E-value=20 Score=31.42 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCCCEEEECCccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEe
Q 032130 64 LDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDID 114 (147)
Q Consensus 64 ~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~ 114 (147)
.-+||+|.=--=+++++..++.++||||-+.. +....+|+-+.+.
T Consensus 534 ~~PdIlIlPSdLr~Fvk~V~~~V~iNpGr~aK------g~~~Gtfa~lti~ 578 (600)
T KOG1625|consen 534 STPDILILPSDLRHFVKDVNGCVVINPGRLAK------GTNGGTFAKLTIR 578 (600)
T ss_pred CCCcEEEechhhHHHHHhcCCeEEEcchhhcc------CcCCceeEEEEEe
Confidence 45788887766667777789999999999985 2346899999886
No 152
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=44.75 E-value=73 Score=23.04 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=39.2
Q ss_pred CCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEE--ECCccCeeEEEECCEEEE-cCCCCCCC
Q 032130 27 YPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILV--TGHTHQFKAYKHEGGVVI-NPGSATGA 96 (147)
Q Consensus 27 lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii--~GHtH~p~~~~~~~~~~i-NpGS~g~p 96 (147)
-|....+++++.+++++|-+-. .....+.+-++++++.-++ |--|=--.-.+.+|..++ =|++-|.|
T Consensus 6 rPAPveIsy~~MrFLIThnPtn---aTln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~p 75 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITHNPTN---ATLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAP 75 (173)
T ss_pred CCCCeeeeccceEEEEecCCCc---hhHHHHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCC
Confidence 3667789999999999995422 2344556666777776554 222211111123455444 46777765
No 153
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=44.48 E-value=81 Score=26.34 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCEEEEEEcC-CCCC--CCCCHHHHHHHHhhCCCCEEEECCccCee-EEEE-CCEEEE
Q 032130 36 GQFKLGICHG-HQVI--PWGDLDSLAMLQRQLDVDILVTGHTHQFK-AYKH-EGGVVI 88 (147)
Q Consensus 36 ~g~~i~~~Hg-~~~~--~~~~~~~l~~~~~~~~~diii~GHtH~p~-~~~~-~~~~~i 88 (147)
.+.-|...|- .-+. |...+..+...+.+.++|+|+.+|.|.+. ++.. ++++++
T Consensus 224 adlviv~~HwG~ey~~~p~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~~~~~I~ 281 (372)
T COG2843 224 ADLVIVQPHWGVEYAYEPAAGQRALARRLIDAGADIIVGHHPHVLQPIEIYIQGKPIL 281 (372)
T ss_pred CCEEEEeccccccccCCCcHHHHHHHHHHHhcCcCeEecCCCCcCcceEEecCCcEEE
Confidence 3345566664 3332 22223344444445799999999999864 4445 455543
No 154
>PRK00865 glutamate racemase; Provisional
Probab=43.94 E-value=12 Score=29.29 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=24.7
Q ss_pred hCCCCEEEECCccCeeEEEE------CCEEEEcCCCCCC
Q 032130 63 QLDVDILVTGHTHQFKAYKH------EGGVVINPGSATG 95 (147)
Q Consensus 63 ~~~~diii~GHtH~p~~~~~------~~~~~iNpGS~g~ 95 (147)
+.++|.||.|.||.|..... .+..+|+|.....
T Consensus 175 ~~g~d~iILGCTh~p~l~~~i~~~~~~~v~vIDp~~~~a 213 (261)
T PRK00865 175 AAGIDTLVLGCTHYPLLKPEIQQVLGEGVTLIDSGEAIA 213 (261)
T ss_pred cCCCCEEEECCcCHHHHHHHHHHHcCCCCEEECCHHHHH
Confidence 45899999999999975421 2467899986554
No 155
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=43.14 E-value=24 Score=25.32 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=34.0
Q ss_pred EEEEEcCCCCCCC----------CCHH----HHHHHHhhCCCCEEEECCccCeeE-------EEECCEEEEcCCCCCC
Q 032130 39 KLGICHGHQVIPW----------GDLD----SLAMLQRQLDVDILVTGHTHQFKA-------YKHEGGVVINPGSATG 95 (147)
Q Consensus 39 ~i~~~Hg~~~~~~----------~~~~----~l~~~~~~~~~diii~GHtH~p~~-------~~~~~~~~iNpGS~g~ 95 (147)
+|++.||+-.+-- .+.+ .+.+.+++.+.++-++=--|.-.. ...-+.++||||..+-
T Consensus 1 ~ilvinGPNLN~LG~Rep~iYG~~tl~~i~~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~TH 78 (140)
T cd00466 1 KILVLNGPNLNLLGKREPEIYGTTTLADIEALLRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTH 78 (140)
T ss_pred CEEEEeCCCccccCCCCCCcCCcCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHH
Confidence 4789999775421 1222 344556666777776655553221 1223679999999883
No 156
>PRK15456 universal stress protein UspG; Provisional
Probab=42.98 E-value=52 Score=22.43 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEEEECCEEEEcCCCCCC
Q 032130 39 KLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATG 95 (147)
Q Consensus 39 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~~~~~~~~iNpGS~g~ 95 (147)
...+..|++ .+.+.+.+++.++|+||.|..+.. . .+ .+ -||++.
T Consensus 85 ~~~v~~G~~------~~~I~~~a~~~~~DLIVmG~~g~~-~---~~-~l--lGS~a~ 128 (142)
T PRK15456 85 KQHVRFGSV------RDEVNELAEELGADVVVIGSRNPS-I---ST-HL--LGSNAS 128 (142)
T ss_pred EEEEcCCCh------HHHHHHHHhhcCCCEEEEcCCCCC-c---cc-ee--cCccHH
Confidence 445555543 356777888899999999997632 2 22 33 288764
No 157
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=42.70 E-value=50 Score=26.28 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=13.2
Q ss_pred HHhhCC-CeEEEeCCCCCC
Q 032130 7 LKSLCP-DLHVTRGEYDED 24 (147)
Q Consensus 7 l~~~~~-~~~~V~GN~D~~ 24 (147)
|+-+.| ++..++|||+..
T Consensus 96 lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 96 LKVRYPDRITLIRGNHESR 114 (303)
T ss_pred HhhcCcceeEEeeccchhh
Confidence 444443 689999999975
No 158
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=40.66 E-value=13 Score=29.68 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=31.4
Q ss_pred hhCCCeEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCC---CCHHHHHHHHhhCCCCEEEECC
Q 032130 9 SLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPW---GDLDSLAMLQRQLDVDILVTGH 73 (147)
Q Consensus 9 ~~~~~~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~---~~~~~l~~~~~~~~~diii~GH 73 (147)
++.-++.+|-+|||....+-+ .+.+. +|.-+.... ...+++.++++++++|+||..=
T Consensus 115 ~L~~eI~~VIsNH~dl~~~v~--~~~IP------fhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLAR 174 (287)
T COG0788 115 ELPAEIVAVISNHDDLRPLVE--RFDIP------FHHIPVTKENKAEAEARLLELLEEYGADLVVLAR 174 (287)
T ss_pred CcCCceEEEEcCCHHHHHHHH--HcCCC------eeeccCCCCcchHHHHHHHHHHHHhCCCEEeehh
Confidence 344579999999996421111 11111 122222221 1234677888899999998753
No 159
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=36.37 E-value=54 Score=26.41 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=36.7
Q ss_pred ECCEEEEEEcCCCCC-----C-CC----C-HHHHHHHHhhCCCCEEEECCccCeeEEE-ECCEEEEcCCC
Q 032130 35 IGQFKLGICHGHQVI-----P-WG----D-LDSLAMLQRQLDVDILVTGHTHQFKAYK-HEGGVVINPGS 92 (147)
Q Consensus 35 ~~g~~i~~~Hg~~~~-----~-~~----~-~~~l~~~~~~~~~diii~GHtH~p~~~~-~~~~~~iNpGS 92 (147)
.++..++++|..++. + .. . .+-+..+.+..+..+-++||.|..+-.. .+...++|+-.
T Consensus 211 p~~iDvL~tHtPPlG~gd~~~~~~gqr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvta~G~t~fina~~ 280 (305)
T KOG3947|consen 211 PGGIDVLITHTPPLGHGDLVPVFSGQRNGCVELLNTVERRVQPKYHVFGHVHEGHGVTADGYTTFINAEL 280 (305)
T ss_pred ccccceeccCCCCCCcchhcccccCcccCHHHHHHhHhhccccceEEeeeeecCceeeecCccccccHHH
Confidence 577889999986652 1 00 1 1222334444678899999999975433 45566777655
No 160
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=36.13 E-value=64 Score=21.92 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=22.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCcc
Q 032130 40 LGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTH 75 (147)
Q Consensus 40 i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH 75 (147)
..+..|.+ .+.+.+.+++.++|+||.|+.+
T Consensus 84 ~~~~~G~p------~~~I~~~a~~~~~DLIV~Gs~~ 113 (144)
T PRK15118 84 TLSGSGDL------GQVLVDAIKKYDMDLVVCGHHQ 113 (144)
T ss_pred EEEEecCH------HHHHHHHHHHhCCCEEEEeCcc
Confidence 34456653 2567788888999999999864
No 161
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=35.41 E-value=33 Score=27.45 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=19.2
Q ss_pred CHHHHHHHHhhCCCCE-EEECCccC
Q 032130 53 DLDSLAMLQRQLDVDI-LVTGHTHQ 76 (147)
Q Consensus 53 ~~~~l~~~~~~~~~di-ii~GHtH~ 76 (147)
-++.+..+++++.+|| ||.||.=.
T Consensus 141 qp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 141 MPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred chHHHHHHHHHhCCCEEEEeCchhh
Confidence 3467788999999995 78999855
No 162
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=35.08 E-value=49 Score=21.77 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHHhhCCCCEEEECCccCee
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
+.+.+++++.++|+||.|+.....
T Consensus 84 ~~I~~~a~~~~~dlIV~G~~~~~~ 107 (132)
T cd01988 84 SGILRTAKERQADLIIMGWHGSTS 107 (132)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCC
Confidence 567778888999999999998654
No 163
>PRK10200 putative racemase; Provisional
Probab=34.39 E-value=36 Score=26.08 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=15.8
Q ss_pred hCCCCEEEECCccCeeEE
Q 032130 63 QLDVDILVTGHTHQFKAY 80 (147)
Q Consensus 63 ~~~~diii~GHtH~p~~~ 80 (147)
+.++|.+|.|.||.|...
T Consensus 187 ~~g~d~vILGCTelpll~ 204 (230)
T PRK10200 187 EQGAQGVIFGCTEIGLLV 204 (230)
T ss_pred HCCCCEEEECCcCHHHhC
Confidence 458999999999999874
No 164
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=33.49 E-value=56 Score=21.48 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=20.4
Q ss_pred HHHHHHHhhCCCCEEEECCccCeeE
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQFKA 79 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p~~ 79 (147)
+.+.+.+++.++|+|+.|+.+....
T Consensus 75 ~~I~~~~~~~~~dllviG~~~~~~~ 99 (124)
T cd01987 75 EAIVEFAREHNVTQIVVGKSRRSRW 99 (124)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCchH
Confidence 5677788889999999999887543
No 165
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=32.53 E-value=64 Score=25.32 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=13.9
Q ss_pred HHHhhCC-CeEEEeCCCCCC
Q 032130 6 YLKSLCP-DLHVTRGEYDED 24 (147)
Q Consensus 6 ~l~~~~~-~~~~V~GN~D~~ 24 (147)
.|++..| ++..++|||+..
T Consensus 98 ~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 98 LLKARYPAKITLLRGNHESR 117 (306)
T ss_pred HHhhcCCceeEEeeccchhh
Confidence 3555553 689999999975
No 166
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=32.20 E-value=20 Score=26.20 Aligned_cols=72 Identities=22% Similarity=0.212 Sum_probs=37.1
Q ss_pred eEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEEE---ECCEEEEcC
Q 032130 14 LHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYK---HEGGVVINP 90 (147)
Q Consensus 14 ~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~~---~~~~~~iNp 90 (147)
-.+|-|.... ...|....+.-.+..+.+||-.- +++.+.. .++|+||.+--..-++.. .++.++|+.
T Consensus 38 ~v~VvGrs~~-VG~Pla~lL~~~~atVt~~h~~T-------~~l~~~~--~~ADIVVsa~G~~~~i~~~~ik~gavVIDv 107 (160)
T PF02882_consen 38 KVVVVGRSNI-VGKPLAMLLLNKGATVTICHSKT-------KNLQEIT--RRADIVVSAVGKPNLIKADWIKPGAVVIDV 107 (160)
T ss_dssp EEEEE-TTTT-THHHHHHHHHHTT-EEEEE-TTS-------SSHHHHH--TTSSEEEE-SSSTT-B-GGGS-TTEEEEE-
T ss_pred EEEEECCcCC-CChHHHHHHHhCCCeEEeccCCC-------Cccccee--eeccEEeeeeccccccccccccCCcEEEec
Confidence 3556666543 34455544555577777787321 2334444 379999998766444322 467888888
Q ss_pred CCCCC
Q 032130 91 GSATG 95 (147)
Q Consensus 91 GS~g~ 95 (147)
|.--.
T Consensus 108 G~~~~ 112 (160)
T PF02882_consen 108 GINYV 112 (160)
T ss_dssp -CEEE
T ss_pred CCccc
Confidence 77543
No 167
>PRK03011 butyrate kinase; Provisional
Probab=31.93 E-value=26 Score=28.93 Aligned_cols=12 Identities=50% Similarity=0.692 Sum_probs=10.2
Q ss_pred CEEEEcCCCCCC
Q 032130 84 GGVVINPGSATG 95 (147)
Q Consensus 84 ~~~~iNpGS~g~ 95 (147)
..++|||||.+.
T Consensus 3 ~il~inpgstst 14 (358)
T PRK03011 3 RILVINPGSTST 14 (358)
T ss_pred EEEEEcCCCchh
Confidence 368999999985
No 168
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=31.52 E-value=16 Score=28.49 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=23.6
Q ss_pred EECCEEEEcCCCCCCCCCC----------CCCCCCCeEEEEEEeC
Q 032130 81 KHEGGVVINPGSATGAYSS----------FTFDVNPSFVLMDIDG 115 (147)
Q Consensus 81 ~~~~~~~iNpGS~g~p~~~----------~~~~~~~~y~il~~~~ 115 (147)
..++.+++|-||+++|-.. ++....+.|.++-+++
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~E 144 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEE 144 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhh
Confidence 4567899999999999100 1223356788887764
No 169
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=31.43 E-value=1.1e+02 Score=22.20 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=18.9
Q ss_pred CCCCCCeEEEEEEeCCEEEEEEEEec
Q 032130 101 TFDVNPSFVLMDIDGLRVVVYVYELI 126 (147)
Q Consensus 101 ~~~~~~~y~il~~~~~~~~v~~~~~~ 126 (147)
.++...+|-++.++..++...+.+..
T Consensus 122 e~~~~~~Y~Vv~~~~~g~~~~y~~~~ 147 (149)
T COG3019 122 EGDRKDSYDVVAVNGDGQSEVYQSYR 147 (149)
T ss_pred CCCCCCceEEEEEcCcccEEEeeeec
Confidence 35668999999998877766555443
No 170
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=30.98 E-value=2.3e+02 Score=24.34 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=43.6
Q ss_pred HhHHHHhhCCCeEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCe
Q 032130 3 VHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 77 (147)
Q Consensus 3 ~l~~l~~~~~~~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p 77 (147)
++..+++++..+++|-.+.|... + .+...+..+.+--+.....+.+.+.+.+++++.++|.|+.|..+..
T Consensus 17 iiraar~lGi~~V~v~s~~d~~a-~----~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gfls 86 (499)
T PRK08654 17 VMRACRELGIKTVAVYSEADKNA-L----FVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGYGFLA 86 (499)
T ss_pred HHHHHHHcCCeEEEEeccccccc-c----chhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEECCCccc
Confidence 46678888877788877766421 1 1122333333322222233446788999999999999999875443
No 171
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=30.55 E-value=60 Score=23.25 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=36.6
Q ss_pred hHHHHhhCCC-eEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCC---CCHHHHHHHHhhCCCCEEEECCccC
Q 032130 4 HDYLKSLCPD-LHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPW---GDLDSLAMLQRQLDVDILVTGHTHQ 76 (147)
Q Consensus 4 l~~l~~~~~~-~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~---~~~~~l~~~~~~~~~diii~GHtH~ 76 (147)
+..-+.++.. ...+.|+.+.. .. ......+--+++++-+..+..+ ...+.+.+++++.++++|++|||-.
T Consensus 21 ~~~A~~l~~~v~~v~~G~~~~~-~~--~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 21 VTAARKLGGEVTALVIGSGAEA-VA--AALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHHHhCCCEEEEEECCChHH-HH--HHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 3344444323 34466765432 11 1112344446666544433221 1223456677778899999999975
No 172
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=29.67 E-value=76 Score=21.16 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCcc
Q 032130 39 KLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTH 75 (147)
Q Consensus 39 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH 75 (147)
-+++.||+....+...+.+...+++.....+..|..-
T Consensus 3 illvgHGSr~~~~~~~~~l~~~l~~~~~~~v~~~~lE 39 (103)
T cd03413 3 VVFMGHGTDHPSNAVYAALEYVLREEDPANVFVGTVE 39 (103)
T ss_pred EEEEECCCCchhhhHHHHHHHHHHhcCCCcEEEEEEc
Confidence 4678899986432222334444443332334444443
No 173
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=29.50 E-value=31 Score=28.76 Aligned_cols=23 Identities=48% Similarity=0.738 Sum_probs=17.9
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEE
Q 032130 85 GVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 118 (147)
Q Consensus 85 ~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~ 118 (147)
.++|||||.+. .|++++.+..+.
T Consensus 2 ILVIN~GSSS~-----------Kfalf~~~~~~~ 24 (388)
T PF00871_consen 2 ILVINPGSSST-----------KFALFDMDSGEV 24 (388)
T ss_dssp EEEEEEESSEE-----------EEEEEETTTTEE
T ss_pred EEEEcCChHhh-----------eeeeEECCCCCe
Confidence 58899999996 388888776553
No 174
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=29.30 E-value=49 Score=22.31 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=13.0
Q ss_pred HHHHHHhhC-CCCEEEECCc
Q 032130 56 SLAMLQRQL-DVDILVTGHT 74 (147)
Q Consensus 56 ~l~~~~~~~-~~diii~GHt 74 (147)
.+.++.+++ +..++++||+
T Consensus 53 ~l~~~~~~~~~~~i~itGHS 72 (140)
T PF01764_consen 53 ALKELVEKYPDYSIVITGHS 72 (140)
T ss_dssp HHHHHHHHSTTSEEEEEEET
T ss_pred HHHHHHhcccCccchhhccc
Confidence 344455444 4889999997
No 175
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=29.28 E-value=66 Score=21.62 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=18.6
Q ss_pred CCHHHHHHHHhhCCCCEEEECC
Q 032130 52 GDLDSLAMLQRQLDVDILVTGH 73 (147)
Q Consensus 52 ~~~~~l~~~~~~~~~diii~GH 73 (147)
.+.+.+.+++++.++|++|.|=
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESS
T ss_pred CCHHHHHHHHHHcCCCEEEECC
Confidence 4678899999999999999984
No 176
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=29.14 E-value=78 Score=26.76 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=23.5
Q ss_pred CHHHHHHHHhhCCCCEEEECCccCeeE
Q 032130 53 DLDSLAMLQRQLDVDILVTGHTHQFKA 79 (147)
Q Consensus 53 ~~~~l~~~~~~~~~diii~GHtH~p~~ 79 (147)
+-+.+++.+++.++.+||+|-+=.+..
T Consensus 154 DyD~~~k~a~e~kPK~ii~G~SaY~r~ 180 (413)
T COG0112 154 DYDEVEKLAKEVKPKLIIAGGSAYSRP 180 (413)
T ss_pred CHHHHHHHHHHhCCCEEEECccccccc
Confidence 567889999999999999999887764
No 177
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=28.76 E-value=62 Score=23.38 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.0
Q ss_pred HHHHHHHhhCCCCEEEECCccC
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQ 76 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~ 76 (147)
+.+.+++++.++++|++|||-.
T Consensus 81 ~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 81 KALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHHHhCCCEEEECCccc
Confidence 3456677777899999999997
No 178
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=28.29 E-value=1.5e+02 Score=23.89 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=28.0
Q ss_pred CCCEEEECCcc-CeeEE----EECCEEEEcC-CCCCCCCCCCCCCCCCeEEEEEEeCCE
Q 032130 65 DVDILVTGHTH-QFKAY----KHEGGVVINP-GSATGAYSSFTFDVNPSFVLMDIDGLR 117 (147)
Q Consensus 65 ~~diii~GHtH-~p~~~----~~~~~~~iNp-GS~g~p~~~~~~~~~~~y~il~~~~~~ 117 (147)
-+|+||.|-.. .++.. ..++.+++|| ||.... .+|.+...-..+
T Consensus 234 lPd~ivL~D~s~~~~~~~~~~~~~~~~~~Np~gsF~~~---------~sF~~Y~~~~~~ 283 (291)
T PTZ00235 234 LPHFICVCDNSCNSFISYASEDTSDCIISNSDMSFTRK---------KTFTVYSALHHE 283 (291)
T ss_pred CCCEEEEecCCCCccceeecccCCceEEECCCCccCCC---------ceEEEEehhcce
Confidence 35678888884 45332 2358899999 498752 267766654443
No 179
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=28.25 E-value=62 Score=23.83 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCeEEEeCCCCCCC--CC----------------------CceEEEEECCEEEEEEcCCCC
Q 032130 12 PDLHVTRGEYDEDS--RY----------------------PETKTLTIGQFKLGICHGHQV 48 (147)
Q Consensus 12 ~~~~~V~GN~D~~~--~l----------------------P~~~~~~~~g~~i~~~Hg~~~ 48 (147)
..+..|+|++|-.. .+ +....+.++|..|+++++...
T Consensus 79 ~~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d~~ 139 (209)
T PF04042_consen 79 TQVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGDIL 139 (209)
T ss_dssp SEEEEE--TTCTT-S-SCSB----TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSHHH
T ss_pred cEEEEeCCCccccccCCCCCCCCCHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCcHH
Confidence 36899999999762 11 223568999999999998653
No 180
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
Probab=27.52 E-value=2.7e+02 Score=21.03 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=38.0
Q ss_pred EEEECCccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEEEEEEEEecCCe
Q 032130 68 ILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGE 129 (147)
Q Consensus 68 iii~GHtH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~~v~~~~~~~~~ 129 (147)
+-+.|++........++.++|-+.-.-.+ ..+++..+++++.++..+..+.+.
T Consensus 115 L~V~GdSM~~~gi~dGDlvvV~~~~~a~~---------GdiVvA~i~g~e~TvKrl~~~g~~ 167 (201)
T COG1974 115 LRVSGDSMIDAGILDGDLVVVDPTEDAEN---------GDIVVALIDGEEATVKRLYRDGNQ 167 (201)
T ss_pred EEecCCccccCcCCCCCEEEEcCCCCCCC---------CCEEEEEcCCCcEEEEEEEEeCCE
Confidence 56778888765445678888988776653 578888888876777776666543
No 181
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=27.39 E-value=71 Score=22.84 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=17.3
Q ss_pred HHHHHHhhCCCCEEEECCccCe
Q 032130 56 SLAMLQRQLDVDILVTGHTHQF 77 (147)
Q Consensus 56 ~l~~~~~~~~~diii~GHtH~p 77 (147)
.+.+.+++.+++.|+.||+---
T Consensus 87 ~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 87 FFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHHHcCCCEEEEcCCcHH
Confidence 3556777889999999998643
No 182
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.39 E-value=43 Score=27.02 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=44.6
Q ss_pred HhHHHHhhCC----CeEEEeCCCCCCCCCCceEEEEEC----CEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEE--C
Q 032130 3 VHDYLKSLCP----DLHVTRGEYDEDSRYPETKTLTIG----QFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVT--G 72 (147)
Q Consensus 3 ~l~~l~~~~~----~~~~V~GN~D~~~~lP~~~~~~~~----g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~--G 72 (147)
+++.|+..+. .-.+|-|...- ...|....+.-. +..+.+||-.- ..+.+.. .++|++|. |
T Consensus 148 vi~lL~~~~i~l~Gk~vvViGrS~i-VGkPla~lL~~~~~~~~atVtv~hs~T-------~~l~~~~--~~ADIvVsAvG 217 (297)
T PRK14168 148 IQEMLVRSGVETSGAEVVVVGRSNI-VGKPIANMMTQKGPGANATVTIVHTRS-------KNLARHC--QRADILIVAAG 217 (297)
T ss_pred HHHHHHHhCCCCCCCEEEEECCCCc-ccHHHHHHHHhcccCCCCEEEEecCCC-------cCHHHHH--hhCCEEEEecC
Confidence 4455555432 23556666554 344544443333 56788888321 1233344 36898887 7
Q ss_pred CccCee-EEEECCEEEEcCCC
Q 032130 73 HTHQFK-AYKHEGGVVINPGS 92 (147)
Q Consensus 73 HtH~p~-~~~~~~~~~iNpGS 92 (147)
.-+.-. ....+|.++|+.|.
T Consensus 218 kp~~i~~~~ik~gavVIDvGi 238 (297)
T PRK14168 218 VPNLVKPEWIKPGATVIDVGV 238 (297)
T ss_pred CcCccCHHHcCCCCEEEecCC
Confidence 777532 12346788899885
No 183
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=27.01 E-value=62 Score=23.46 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=12.5
Q ss_pred HHHHHHhhCCCCEEEECCcc
Q 032130 56 SLAMLQRQLDVDILVTGHTH 75 (147)
Q Consensus 56 ~l~~~~~~~~~diii~GHtH 75 (147)
.+.+.+++.+++.|+.||+=
T Consensus 87 ~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 87 FLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHHHHHTTT-CEEE---BH
T ss_pred HHHHhhhcccccceeecCcC
Confidence 45667888999999999974
No 184
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=26.77 E-value=72 Score=22.79 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=16.4
Q ss_pred HHHHHHhhCCCCEEEECCcc
Q 032130 56 SLAMLQRQLDVDILVTGHTH 75 (147)
Q Consensus 56 ~l~~~~~~~~~diii~GHtH 75 (147)
.+.+++++.++|+|||=|--
T Consensus 80 ~l~~~l~~~~PD~IIsThp~ 99 (169)
T PF06925_consen 80 RLIRLLREFQPDLIISTHPF 99 (169)
T ss_pred HHHHHHhhcCCCEEEECCcc
Confidence 56777888999999997764
No 185
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=26.43 E-value=85 Score=20.36 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=18.3
Q ss_pred HHHHHHhhCCCCEEEECCccCeeE
Q 032130 56 SLAMLQRQLDVDILVTGHTHQFKA 79 (147)
Q Consensus 56 ~l~~~~~~~~~diii~GHtH~p~~ 79 (147)
.+.+.+++.+++.|+.||..-...
T Consensus 52 ~~~~~a~~~g~~~i~~g~~~~D~~ 75 (103)
T cd01986 52 AAKRIAKEKGAETIATGTRRDDVA 75 (103)
T ss_pred HHHHHHHHcCCCEEEEcCCcchHH
Confidence 345567778999999999886543
No 186
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=25.59 E-value=2e+02 Score=20.07 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=32.9
Q ss_pred EEEEECCEEEEEEcCCCCCC-------------CCCHHHHHHHHhhCCCCEEEECCc
Q 032130 31 KTLTIGQFKLGICHGHQVIP-------------WGDLDSLAMLQRQLDVDILVTGHT 74 (147)
Q Consensus 31 ~~~~~~g~~i~~~Hg~~~~~-------------~~~~~~l~~~~~~~~~diii~GHt 74 (147)
+-++++.++|.++=+.+... ....+.+.+++++++++.+|.|--
T Consensus 4 L~lD~G~kriGiAvsd~~~~~a~pl~~i~~~~~~~~~~~l~~li~~~~i~~iVvGlP 60 (135)
T PF03652_consen 4 LGLDYGTKRIGIAVSDPLGIIASPLETIPRRNREKDIEELKKLIEEYQIDGIVVGLP 60 (135)
T ss_dssp EEEEECSSEEEEEEEETTTSSEEEEEEEEECCCCCCHHHHHHHHHHCCECEEEEEEE
T ss_pred EEEEeCCCeEEEEEecCCCCeEeeeEEEECCCCchHHHHHHHHHHHhCCCEEEEeCC
Confidence 45678888888887755311 235678999999999999999963
No 187
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=25.46 E-value=30 Score=21.75 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=7.3
Q ss_pred CCEEEECCc
Q 032130 66 VDILVTGHT 74 (147)
Q Consensus 66 ~diii~GHt 74 (147)
-|++++|||
T Consensus 3 gDliFSGHt 11 (74)
T PF14360_consen 3 GDLIFSGHT 11 (74)
T ss_pred CCEEEchhH
Confidence 388899997
No 188
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.42 E-value=38 Score=27.17 Aligned_cols=68 Identities=32% Similarity=0.459 Sum_probs=38.3
Q ss_pred EEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEE--CCccCeeE-EEECCEEEEcCC
Q 032130 15 HVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVT--GHTHQFKA-YKHEGGVVINPG 91 (147)
Q Consensus 15 ~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~--GHtH~p~~-~~~~~~~~iNpG 91 (147)
.+|-|.... ..-|....+.-.+..+.+||-.- ..+.+.. .++|++|. |.-+.-.. ...++.++|+.|
T Consensus 167 vvViGrs~i-VGkPla~lL~~~~atVtv~hs~T-------~~l~~~~--~~ADIvv~AvG~p~~i~~~~vk~gavVIDvG 236 (287)
T PRK14176 167 AVIVGHSNV-VGKPMAAMLLNRNATVSVCHVFT-------DDLKKYT--LDADILVVATGVKHLIKADMVKEGAVIFDVG 236 (287)
T ss_pred EEEECCCcc-cHHHHHHHHHHCCCEEEEEeccC-------CCHHHHH--hhCCEEEEccCCccccCHHHcCCCcEEEEec
Confidence 445555543 33454444444566777777321 1233334 36898887 77664211 224678888888
Q ss_pred C
Q 032130 92 S 92 (147)
Q Consensus 92 S 92 (147)
+
T Consensus 237 i 237 (287)
T PRK14176 237 I 237 (287)
T ss_pred c
Confidence 7
No 189
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=25.02 E-value=50 Score=26.56 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.6
Q ss_pred HHHHHHHHhhCCCCE-EEECCccC
Q 032130 54 LDSLAMLQRQLDVDI-LVTGHTHQ 76 (147)
Q Consensus 54 ~~~l~~~~~~~~~di-ii~GHtH~ 76 (147)
++.+.++++++.+|| ||.||.=.
T Consensus 143 p~~i~~Ll~~~~PDIlViTGHD~~ 166 (287)
T PF05582_consen 143 PEKIYRLLEEYRPDILVITGHDGY 166 (287)
T ss_pred hHHHHHHHHHcCCCEEEEeCchhh
Confidence 356788899999995 78999874
No 190
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.97 E-value=43 Score=26.98 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=45.1
Q ss_pred HhHHHHhhC----CCeEEEeCCCCCCCCCCceEEEEEC----CEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEE--C
Q 032130 3 VHDYLKSLC----PDLHVTRGEYDEDSRYPETKTLTIG----QFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVT--G 72 (147)
Q Consensus 3 ~l~~l~~~~----~~~~~V~GN~D~~~~lP~~~~~~~~----g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~--G 72 (147)
+++.|+..+ ..-.+|-|.... ..-|....+.-. +..+.+||-.- ..+.+.. .++||+|. |
T Consensus 144 vi~lL~~~~i~l~Gk~vvViGrS~i-VGkPla~lL~~~~~~~~aTVtvchs~T-------~~l~~~~--~~ADIvIsAvG 213 (297)
T PRK14167 144 IQKLLAAAGVDTEGADVVVVGRSDI-VGKPMANLLIQKADGGNATVTVCHSRT-------DDLAAKT--RRADIVVAAAG 213 (297)
T ss_pred HHHHHHHhCCCCCCCEEEEECCCcc-cHHHHHHHHhcCccCCCCEEEEeCCCC-------CCHHHHH--hhCCEEEEccC
Confidence 344555433 123556666654 344554443333 56788888321 1233344 36999998 8
Q ss_pred CccCeeE-EEECCEEEEcCCC
Q 032130 73 HTHQFKA-YKHEGGVVINPGS 92 (147)
Q Consensus 73 HtH~p~~-~~~~~~~~iNpGS 92 (147)
.-+.--. ...+|.++|+.|.
T Consensus 214 kp~~i~~~~ik~gaiVIDvGi 234 (297)
T PRK14167 214 VPELIDGSMLSEGATVIDVGI 234 (297)
T ss_pred CcCccCHHHcCCCCEEEEccc
Confidence 8875321 2346788888884
No 191
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=24.60 E-value=63 Score=22.89 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCCEEEECCccCe
Q 032130 56 SLAMLQRQLDVDILVTGHTHQF 77 (147)
Q Consensus 56 ~l~~~~~~~~~diii~GHtH~p 77 (147)
.+.+++++.++++|++|++-.-
T Consensus 81 ~l~~~~~~~~~~lVl~~~t~~g 102 (164)
T PF01012_consen 81 ALAELIKEEGPDLVLFGSTSFG 102 (164)
T ss_dssp HHHHHHHHHT-SEEEEESSHHH
T ss_pred HHHHHHHhcCCCEEEEcCcCCC
Confidence 4677778889999999998754
No 192
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=24.48 E-value=1.2e+02 Score=23.20 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCc
Q 032130 39 KLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHT 74 (147)
Q Consensus 39 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHt 74 (147)
||.+|-|+.. .+...+.+.++|++|+|..
T Consensus 172 rVav~~GsG~-------~~i~~a~~~g~D~~ITGd~ 200 (241)
T PF01784_consen 172 RVAVCGGSGG-------SFIEEAAEAGADVYITGDI 200 (241)
T ss_dssp EEEEECSSSG-------GGHHHHHHTTSSEEEESS-
T ss_pred EEEEEcccCc-------cHHHHHHhCCCeEEEEccC
Confidence 7899999864 2233444568899999887
No 193
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=24.26 E-value=68 Score=23.12 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCCC----------CCHH----HHHHHHhhCCCCEEEECCccCeeE-------EEECCEEEEcCCCCCC
Q 032130 39 KLGICHGHQVIPW----------GDLD----SLAMLQRQLDVDILVTGHTHQFKA-------YKHEGGVVINPGSATG 95 (147)
Q Consensus 39 ~i~~~Hg~~~~~~----------~~~~----~l~~~~~~~~~diii~GHtH~p~~-------~~~~~~~~iNpGS~g~ 95 (147)
+|++.+|+-.+-- ...+ .+++.+.+.+..+-+.=--|.-.. ......++||||..+-
T Consensus 2 ~ilvlnGPNLN~LG~REp~iYG~~Tl~di~~~~~~~a~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~TH 79 (146)
T COG0757 2 KILVLNGPNLNLLGKREPGIYGSTTLEDIEADLEEEAAKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTH 79 (146)
T ss_pred eEEEEeCCCccccCCCCCCccCcccHHHHHHHHHHHHHHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCccchh
Confidence 6889999776421 1222 334455556666665544443221 1111228999999884
No 194
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=24.23 E-value=87 Score=22.58 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHhhCCCCEEEECCccC
Q 032130 56 SLAMLQRQLDVDILVTGHTHQ 76 (147)
Q Consensus 56 ~l~~~~~~~~~diii~GHtH~ 76 (147)
.+.+.+++.+++.|+.||+-.
T Consensus 90 ~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 90 FFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred HHHHHHHHcCCCEEEEcCccH
Confidence 456677788999999999854
No 195
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=24.23 E-value=1e+02 Score=19.84 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=19.1
Q ss_pred HHHHHHHhhCCCCEEEECCccCe
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQF 77 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p 77 (147)
+.+.+.+++.++|+||.|.....
T Consensus 92 ~~i~~~~~~~~~dliv~G~~~~~ 114 (140)
T PF00582_consen 92 DAIIEFAEEHNADLIVMGSRGRS 114 (140)
T ss_dssp HHHHHHHHHTTCSEEEEESSSTT
T ss_pred hhhhhccccccceeEEEeccCCC
Confidence 46677888899999999998854
No 196
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=24.20 E-value=27 Score=25.83 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=23.0
Q ss_pred EECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECC
Q 032130 34 TIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 73 (147)
Q Consensus 34 ~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GH 73 (147)
.+.+.+|..+||.. ++ ...+.+.+.+.+.++|+++.|=
T Consensus 71 ~yP~l~i~g~~g~f-~~-~~~~~i~~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 71 EYPKLKIVGAFGPL-EP-EERKAALAKIARSGAGIVFVGL 108 (177)
T ss_pred HCCCCEEEEECCCC-Ch-HHHHHHHHHHHHcCCCEEEEEc
Confidence 44566666556554 22 1234456666678999988873
No 197
>TIGR00320 dfx_rbo desulfoferrodoxin. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough.
Probab=23.91 E-value=2.6e+02 Score=19.46 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=35.6
Q ss_pred ccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEEEEEEEEecCCeEeeeEEEE
Q 032130 74 THQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 137 (147)
Q Consensus 74 tH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (147)
.|.|.+...++.+.|..||+--| -.....-+|+-|...+ ++ ....+..++-+..++..
T Consensus 48 kHvP~ie~~~~~~~V~vG~v~Hp---M~~~H~I~~I~l~~~~-~~--~~~~l~P~~~p~a~F~~ 105 (125)
T TIGR00320 48 KHVPVIEKTGNGYKVKVGSVAHP---MEEKHYIQWIELIADD-KV--YRKFLKPGDAPEAEFLI 105 (125)
T ss_pred CcceEEEEcCCeEEEEECcccCC---CCCCeEEEEEEEEECC-cE--EEEEeCCCCCceEEEEE
Confidence 79999988888999999987766 2333344566665544 33 44455444333333333
No 198
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=23.75 E-value=1.9e+02 Score=21.51 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=25.9
Q ss_pred ECCEEEEEEcCCCCCCCCC---HHHHHHHHhhCCCCEEEECCccC
Q 032130 35 IGQFKLGICHGHQVIPWGD---LDSLAMLQRQLDVDILVTGHTHQ 76 (147)
Q Consensus 35 ~~g~~i~~~Hg~~~~~~~~---~~~l~~~~~~~~~diii~GHtH~ 76 (147)
.+--+++++....+..+.. ...+.+++++.++++|++|||-.
T Consensus 75 ~G~d~V~~~~~~~~~~~~~e~~a~al~~~i~~~~p~lVL~~~t~~ 119 (202)
T cd01714 75 MGADRAILVSDRAFAGADTLATAKALAAAIKKIGVDLILTGKQSI 119 (202)
T ss_pred cCCCEEEEEecccccCCChHHHHHHHHHHHHHhCCCEEEEcCCcc
Confidence 3444666665544322221 22456666777899999999985
No 199
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=23.45 E-value=1e+02 Score=25.35 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=16.0
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCC
Q 032130 85 GVVINPGSATGAYSSFTFDVNPSFVLMDIDGL 116 (147)
Q Consensus 85 ~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~ 116 (147)
.++|||||.+.. +++++.+..
T Consensus 2 il~in~Gsts~k-----------~alf~~~~~ 22 (351)
T TIGR02707 2 ILVINPGSTSTK-----------LAVFEDERP 22 (351)
T ss_pred EEEEecCchhhe-----------EEEEeCCCc
Confidence 588999999963 777776544
No 200
>TIGR00035 asp_race aspartate racemase.
Probab=23.26 E-value=76 Score=24.04 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=16.1
Q ss_pred hCCCCEEEECCccCeeEEE
Q 032130 63 QLDVDILVTGHTHQFKAYK 81 (147)
Q Consensus 63 ~~~~diii~GHtH~p~~~~ 81 (147)
+.++|.||.|.||.|....
T Consensus 185 ~~gad~iILgCTelpll~~ 203 (229)
T TIGR00035 185 ERGAEGIILGCTELSLILK 203 (229)
T ss_pred hCCCCEEEEeCcchHhhcc
Confidence 4589999999999997753
No 201
>PRK10116 universal stress protein UspC; Provisional
Probab=22.79 E-value=98 Score=20.82 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHHHHhhCCCCEEEECCccCe
Q 032130 55 DSLAMLQRQLDVDILVTGHTHQF 77 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHtH~p 77 (147)
+.+.+.+++.++|+||.|+....
T Consensus 92 ~~I~~~a~~~~~DLiV~g~~~~~ 114 (142)
T PRK10116 92 EHILEVCRKHHFDLVICGNHNHS 114 (142)
T ss_pred HHHHHHHHHhCCCEEEEcCCcch
Confidence 56777888899999999987654
No 202
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=22.48 E-value=3.8e+02 Score=21.40 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=39.7
Q ss_pred HhHHHHhhCCCeEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCee
Q 032130 3 VHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 3 ~l~~l~~~~~~~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
.+++-...+..+.+.+-++|+- ..-....+++.. + .+. .--+++.+++++.+..+=++||-++..
T Consensus 39 Li~eA~~k~A~~iflPE~~dFi-~~n~~esi~Lae-------~--l~~-k~m~~y~elar~~nIwlSlgg~~~r~~ 103 (295)
T KOG0807|consen 39 LISEAAQKGAKLIFLPEAFDFI-GQNPLESIELAE-------P--LDG-KFMEQYRELARSHNIWLSLGGHHERSD 103 (295)
T ss_pred HHHHHHHcCCCEEEcchhhhhh-cCCcccceeccc-------c--cCh-HHHHHHHHHHHhcCeeEEeccccCCCc
Confidence 3444444445688888888873 333333333321 1 111 123577888999999999999998764
No 203
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=22.22 E-value=52 Score=26.78 Aligned_cols=11 Identities=45% Similarity=0.682 Sum_probs=9.7
Q ss_pred EEEEcCCCCCC
Q 032130 85 GVVINPGSATG 95 (147)
Q Consensus 85 ~~~iNpGS~g~ 95 (147)
.+.|||||.+.
T Consensus 5 iltINPGstst 15 (358)
T COG3426 5 ILTINPGSTST 15 (358)
T ss_pred EEEecCCCccc
Confidence 68899999985
No 204
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=22.07 E-value=1.2e+02 Score=27.33 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=48.6
Q ss_pred EECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEEE---ECC-E--EEEcCCCCCCC-----CCCCCC
Q 032130 34 TIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYK---HEG-G--VVINPGSATGA-----YSSFTF 102 (147)
Q Consensus 34 ~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~~---~~~-~--~~iNpGS~g~p-----~~~~~~ 102 (147)
.+++.+|.++||-+-+ ...+.+.+.|++...||+|+- -.++. ..+ . ++-||==.|.+ +++=.+
T Consensus 504 ~~~~~~vgL~HGrm~~--~eKd~vM~~Fk~~e~~ILVaT----TVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGR 577 (677)
T COG1200 504 FLPELKVGLVHGRMKP--AEKDAVMEAFKEGEIDILVAT----TVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGR 577 (677)
T ss_pred HcccceeEEEecCCCh--HHHHHHHHHHHcCCCcEEEEe----eEEEecccCCCCeEEEEechhhhhHHHHHHhccccCC
Confidence 4678899999998642 245677778888889999873 22222 122 2 23477556654 222245
Q ss_pred CCCCeEEEEEEeCC
Q 032130 103 DVNPSFVLMDIDGL 116 (147)
Q Consensus 103 ~~~~~y~il~~~~~ 116 (147)
+...|||+|-....
T Consensus 578 G~~qSyC~Ll~~~~ 591 (677)
T COG1200 578 GDLQSYCVLLYKPP 591 (677)
T ss_pred CCcceEEEEEeCCC
Confidence 56789998877543
No 205
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=22.00 E-value=59 Score=26.28 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=37.8
Q ss_pred EEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEE----EECCEEEEcC
Q 032130 15 HVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAY----KHEGGVVINP 90 (147)
Q Consensus 15 ~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~----~~~~~~~iNp 90 (147)
.+|-|...- ..-|....+.-.+..+.+||-.- ..+.+.. .++|++|.+=-. |... ..+|.++|+.
T Consensus 170 vvVIGRS~i-VGkPla~lL~~~~ATVtvchs~T-------~nl~~~~--~~ADIvv~AvGk-~~~i~~~~vk~gavVIDv 238 (299)
T PLN02516 170 AVVVGRSNI-VGLPVSLLLLKADATVTVVHSRT-------PDPESIV--READIVIAAAGQ-AMMIKGDWIKPGAAVIDV 238 (299)
T ss_pred EEEECCCcc-chHHHHHHHHHCCCEEEEeCCCC-------CCHHHHH--hhCCEEEEcCCC-cCccCHHHcCCCCEEEEe
Confidence 445555543 34455444444567777787321 1244444 368888877444 3322 2467888888
Q ss_pred CCC
Q 032130 91 GSA 93 (147)
Q Consensus 91 GS~ 93 (147)
|.-
T Consensus 239 Gin 241 (299)
T PLN02516 239 GTN 241 (299)
T ss_pred ecc
Confidence 864
No 206
>PLN00416 carbonate dehydratase
Probab=21.34 E-value=52 Score=25.96 Aligned_cols=13 Identities=38% Similarity=0.391 Sum_probs=10.6
Q ss_pred CCEEEECCccCee
Q 032130 66 VDILVTGHTHQFK 78 (147)
Q Consensus 66 ~diii~GHtH~p~ 78 (147)
..||||||++.-.
T Consensus 140 ~~IVV~GHs~CGa 152 (258)
T PLN00416 140 ENILVIGHSCCGG 152 (258)
T ss_pred CEEEEecCCCchH
Confidence 4699999998755
No 207
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=21.30 E-value=47 Score=27.81 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=14.1
Q ss_pred CCCCEEEECCccCeeE
Q 032130 64 LDVDILVTGHTHQFKA 79 (147)
Q Consensus 64 ~~~diii~GHtH~p~~ 79 (147)
..+|+++.||.|.|..
T Consensus 199 IHaDlv~~g~~h~~~a 214 (388)
T COG1168 199 IHADLVLGGHKHIPFA 214 (388)
T ss_pred ccccccccCCCccchh
Confidence 4789999999999975
No 208
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=21.27 E-value=1.1e+02 Score=21.69 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=17.0
Q ss_pred HHHHHHhhCCCCEEEECCccC
Q 032130 56 SLAMLQRQLDVDILVTGHTHQ 76 (147)
Q Consensus 56 ~l~~~~~~~~~diii~GHtH~ 76 (147)
.+.+.+++.++++|+.||.--
T Consensus 97 ~l~~~a~~~g~~~l~~Gh~~d 117 (185)
T cd01993 97 LLNKIAKELGADKLATGHNLD 117 (185)
T ss_pred HHHHHHHHcCCCEEEEcCChH
Confidence 456677788999999999864
No 209
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=21.24 E-value=98 Score=24.03 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=17.6
Q ss_pred HHHHHHhhCCCCEEEECCccCe
Q 032130 56 SLAMLQRQLDVDILVTGHTHQF 77 (147)
Q Consensus 56 ~l~~~~~~~~~diii~GHtH~p 77 (147)
.+.+.+++.+++.|+.||+=--
T Consensus 111 ~l~~~a~~~g~~~i~tgH~~dD 132 (298)
T COG0037 111 LLYKIAKELGADKIATGHHLDD 132 (298)
T ss_pred HHHHHHHHcCCCeEEeccCcHH
Confidence 4566788899999999997643
No 210
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=21.19 E-value=1e+02 Score=25.58 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=16.4
Q ss_pred HHHHHHHhhCCCCEEEECCc
Q 032130 55 DSLAMLQRQLDVDILVTGHT 74 (147)
Q Consensus 55 ~~l~~~~~~~~~diii~GHt 74 (147)
+.+.+++++.++|++|||=.
T Consensus 70 ~~i~~mv~~~~pD~viaGPa 89 (349)
T PF07355_consen 70 KKILEMVKKLKPDVVIAGPA 89 (349)
T ss_pred HHHHHHHHhcCCCEEEEcCC
Confidence 35677888999999999954
No 211
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.14 E-value=1.4e+02 Score=23.23 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCc
Q 032130 37 QFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHT 74 (147)
Q Consensus 37 g~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHt 74 (147)
+.+|..+|..++++. ..+.+.+.+.+.++|+++.|=.
T Consensus 130 ~l~i~g~~~Gyf~~~-e~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 130 NVNIVGSQDGYFTPE-QRQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred CCEEEEEeCCCCCHH-HHHHHHHHHHhcCCCEEEEECC
Confidence 667766664444322 2234556666778998888743
No 212
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=20.84 E-value=5.6e+02 Score=22.23 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=57.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHhhCCCCEEEECCccCeeEEEE---CCEEEEcCCC-CCCCCCCC-------------
Q 032130 38 FKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKH---EGGVVINPGS-ATGAYSSF------------- 100 (147)
Q Consensus 38 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~diii~GHtH~p~~~~~---~~~~~iNpGS-~g~p~~~~------------- 100 (147)
.|+-+.||+........+.+++..++.+-.+-|..-+-=|.++.. ++.+.+++|. +..-....
T Consensus 34 ~RlNfSHG~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y 113 (477)
T COG0469 34 VRLNFSHGDHEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIRTGKFKGGAVELEKGEKFTLTTDDKVGEGDEERVSVDY 113 (477)
T ss_pred EEEecCCCChHHHHHHHHHHHHHHHHhCCceEEEEcCCCCcceeEecCCCcEEeecCCEEEEeccccccCCCCcEEeccH
Confidence 578899998765444455667777778888888888888876542 4556666666 11110000
Q ss_pred ----CCCCCCeEEEEEEeCCEEEEEEEEecCCeEeeeE
Q 032130 101 ----TFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDK 134 (147)
Q Consensus 101 ----~~~~~~~y~il~~~~~~~~v~~~~~~~~~~~~~~ 134 (147)
..-.+...++| ++|++.++..+.+.+.+++..
T Consensus 114 ~~l~~dV~~G~~iLl--DDG~i~l~V~~v~~~~v~~~v 149 (477)
T COG0469 114 KDLAKDVKPGDRILL--DDGKIELRVVEVDGDAVITRV 149 (477)
T ss_pred HHHHhhcCCCCEEEE--eCCeeEEEEEEeeCCEEEEEE
Confidence 01112334444 478888888777765555443
No 213
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=20.77 E-value=1.1e+02 Score=19.16 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=19.6
Q ss_pred HHHHHHHHhhCCCCEEEECCccCee
Q 032130 54 LDSLAMLQRQLDVDILVTGHTHQFK 78 (147)
Q Consensus 54 ~~~l~~~~~~~~~diii~GHtH~p~ 78 (147)
...+.+++.+.+++++|+|+.-...
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~ 66 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGA 66 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHH
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHH
Confidence 3466777777999999999987654
No 214
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=20.33 E-value=85 Score=23.83 Aligned_cols=76 Identities=13% Similarity=0.021 Sum_probs=37.6
Q ss_pred eEEEeCCCCCCCCCCceEEEEECCEEEEEEcCCCC----------CCC---CC-HHHHHHHHhhCCCCEEEECCccCee-
Q 032130 14 LHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQV----------IPW---GD-LDSLAMLQRQLDVDILVTGHTHQFK- 78 (147)
Q Consensus 14 ~~~V~GN~D~~~~lP~~~~~~~~g~~i~~~Hg~~~----------~~~---~~-~~~l~~~~~~~~~diii~GHtH~p~- 78 (147)
-.+|-|...- ...|....+.-.+..+.+||-... ... .+ ...+.+.. .++||||.+=-..-+
T Consensus 64 ~vvVIGrS~i-VGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~--~~ADIVIsAvG~~~~~ 140 (197)
T cd01079 64 TITIINRSEV-VGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCL--SQSDVVITGVPSPNYK 140 (197)
T ss_pred EEEEECCCcc-chHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHh--hhCCEEEEccCCCCCc
Confidence 3556666544 345555555556677777762110 000 01 11234444 357777765333322
Q ss_pred E---EEECCEEEEcCCC
Q 032130 79 A---YKHEGGVVINPGS 92 (147)
Q Consensus 79 ~---~~~~~~~~iNpGS 92 (147)
+ ...+|.++|+.|.
T Consensus 141 i~~d~ik~GavVIDVGi 157 (197)
T cd01079 141 VPTELLKDGAICINFAS 157 (197)
T ss_pred cCHHHcCCCcEEEEcCC
Confidence 2 2246778888774
No 215
>cd03171 SORL_Dfx_classI Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=20.15 E-value=2.5e+02 Score=17.85 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=34.7
Q ss_pred ccCeeEEEECCEEEEcCCCCCCCCCCCCCCCCCeEEEEEEeCCEEEEEEEEecCCeEeeeEEE
Q 032130 74 THQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKID 136 (147)
Q Consensus 74 tH~p~~~~~~~~~~iNpGS~g~p~~~~~~~~~~~y~il~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (147)
-|.|.+...++.+.|..||+--| -..+..-+|+-+..++ + +....+..++-...++.
T Consensus 3 kHvP~ie~~~~~v~V~VG~v~HP---M~~eH~I~wI~l~~~~-~--~~~~~l~P~~~p~a~F~ 59 (78)
T cd03171 3 KHVPVIEKIGGGIKVKVGSVAHP---MEEKHYIEWIELLADG-K--VYRKHLKPGDAPEAEFS 59 (78)
T ss_pred CcceEEEEcCCEEEEEECcccCC---CCCCeEEEEEEEEeCC-c--EEEEEeCCCCccEEEEE
Confidence 48999988889999999987766 2333445666665443 3 33444543333333333
Done!