Query 032131
Match_columns 147
No_of_seqs 117 out of 1646
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:00:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.6E-25 3.6E-30 148.9 16.0 117 1-117 1-118 (144)
2 KOG0121 Nuclear cap-binding pr 99.9 1.6E-21 3.5E-26 123.7 8.0 115 29-147 32-146 (153)
3 TIGR01659 sex-lethal sex-letha 99.8 1.6E-18 3.5E-23 130.0 14.5 82 32-113 192-275 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.8E-17 3.8E-22 124.9 12.3 83 33-115 269-351 (352)
5 PF00076 RRM_1: RNA recognitio 99.7 1.2E-16 2.6E-21 93.4 9.7 70 36-106 1-70 (70)
6 TIGR01659 sex-lethal sex-letha 99.7 7E-17 1.5E-21 121.2 10.7 83 29-111 103-185 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 8.8E-17 1.9E-21 121.1 11.3 83 32-114 2-84 (352)
8 KOG0122 Translation initiation 99.7 6.5E-17 1.4E-21 112.9 9.7 82 32-113 188-269 (270)
9 KOG0107 Alternative splicing f 99.7 2.7E-16 5.9E-21 104.9 11.3 78 33-115 10-87 (195)
10 TIGR01648 hnRNP-R-Q heterogene 99.7 5.9E-16 1.3E-20 122.2 13.9 75 32-114 232-308 (578)
11 KOG0105 Alternative splicing f 99.7 9.6E-16 2.1E-20 103.3 9.4 79 32-113 5-83 (241)
12 KOG4207 Predicted splicing fac 99.7 7.7E-16 1.7E-20 105.3 8.7 79 34-112 14-92 (256)
13 PF14259 RRM_6: RNA recognitio 99.6 3E-15 6.5E-20 87.7 9.6 70 36-106 1-70 (70)
14 KOG0113 U1 small nuclear ribon 99.6 8E-15 1.7E-19 105.1 12.0 85 30-114 98-182 (335)
15 KOG0126 Predicted RNA-binding 99.6 6.4E-17 1.4E-21 108.6 0.7 112 1-112 1-114 (219)
16 TIGR01645 half-pint poly-U bin 99.6 6.3E-15 1.4E-19 116.8 11.8 83 32-114 203-285 (612)
17 TIGR01645 half-pint poly-U bin 99.6 3.5E-15 7.6E-20 118.2 9.8 83 30-112 104-186 (612)
18 PLN03120 nucleic acid binding 99.6 1.9E-14 4.2E-19 102.7 11.0 77 33-113 4-80 (260)
19 TIGR01628 PABP-1234 polyadenyl 99.6 1.5E-14 3.2E-19 115.3 11.7 78 35-112 2-79 (562)
20 KOG0149 Predicted RNA-binding 99.6 4.8E-15 1E-19 103.1 7.2 77 34-111 13-89 (247)
21 KOG0130 RNA-binding protein RB 99.6 9.2E-15 2E-19 93.9 7.2 84 32-115 71-154 (170)
22 smart00362 RRM_2 RNA recogniti 99.6 4.9E-14 1.1E-18 81.8 9.5 72 35-108 1-72 (72)
23 KOG0125 Ataxin 2-binding prote 99.6 1.5E-14 3.3E-19 104.9 8.7 81 31-113 94-174 (376)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.6 4E-14 8.8E-19 111.5 11.8 82 31-112 293-374 (509)
25 TIGR01622 SF-CC1 splicing fact 99.6 3.4E-14 7.4E-19 110.6 11.2 80 33-112 186-265 (457)
26 TIGR01622 SF-CC1 splicing fact 99.5 8.2E-14 1.8E-18 108.4 11.2 82 30-112 86-167 (457)
27 TIGR01628 PABP-1234 polyadenyl 99.5 6E-14 1.3E-18 111.8 10.2 82 31-113 283-364 (562)
28 TIGR01648 hnRNP-R-Q heterogene 99.5 6E-14 1.3E-18 110.9 9.8 80 30-110 55-135 (578)
29 smart00360 RRM RNA recognition 99.5 1.2E-13 2.5E-18 79.9 8.6 71 38-108 1-71 (71)
30 PLN03121 nucleic acid binding 99.5 1.6E-13 3.5E-18 96.7 10.7 79 30-112 2-80 (243)
31 KOG0148 Apoptosis-promoting RN 99.5 5.1E-14 1.1E-18 99.9 8.1 81 34-114 63-143 (321)
32 KOG0148 Apoptosis-promoting RN 99.5 2.5E-13 5.4E-18 96.5 11.3 82 26-113 157-238 (321)
33 KOG0111 Cyclophilin-type pepti 99.5 1.6E-14 3.5E-19 99.9 5.0 86 29-114 6-91 (298)
34 PLN03213 repressor of silencin 99.5 1.3E-13 2.8E-18 105.1 9.8 78 31-112 8-87 (759)
35 KOG0117 Heterogeneous nuclear 99.5 1.4E-13 3.1E-18 103.4 9.7 82 30-111 80-162 (506)
36 KOG0117 Heterogeneous nuclear 99.5 1.2E-13 2.6E-18 103.8 8.7 78 29-114 255-332 (506)
37 KOG0114 Predicted RNA-binding 99.5 2.2E-13 4.7E-18 83.8 8.3 80 30-112 15-94 (124)
38 KOG0116 RasGAP SH3 binding pro 99.5 4.8E-13 1.1E-17 101.9 11.2 81 32-113 287-367 (419)
39 cd00590 RRM RRM (RNA recogniti 99.5 1E-12 2.2E-17 76.5 10.2 74 35-109 1-74 (74)
40 KOG4212 RNA-binding protein hn 99.5 3.3E-13 7.1E-18 101.5 9.9 79 33-112 44-123 (608)
41 KOG0131 Splicing factor 3b, su 99.5 9.5E-14 2.1E-18 93.4 5.9 81 31-111 7-87 (203)
42 KOG0108 mRNA cleavage and poly 99.5 2.5E-13 5.4E-18 104.0 8.2 82 34-115 19-100 (435)
43 COG0724 RNA-binding proteins ( 99.5 7.2E-13 1.6E-17 95.3 10.2 79 33-111 115-193 (306)
44 KOG0145 RNA-binding protein EL 99.4 5.8E-13 1.3E-17 94.3 8.6 84 30-113 38-121 (360)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.4E-12 2.9E-17 102.4 11.3 78 31-113 273-351 (481)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.5E-12 5.4E-17 100.9 10.7 76 33-114 2-79 (481)
47 KOG0145 RNA-binding protein EL 99.4 3.6E-12 7.8E-17 90.4 10.1 83 31-113 276-358 (360)
48 KOG0144 RNA-binding protein CU 99.4 7.4E-13 1.6E-17 99.3 7.0 84 30-113 31-117 (510)
49 KOG0127 Nucleolar protein fibr 99.4 2.2E-12 4.7E-17 99.3 8.9 82 32-114 116-197 (678)
50 PF13893 RRM_5: RNA recognitio 99.4 7.4E-12 1.6E-16 70.1 8.3 56 50-110 1-56 (56)
51 smart00361 RRM_1 RNA recogniti 99.3 1.5E-11 3.4E-16 72.0 8.3 61 47-107 2-69 (70)
52 KOG0146 RNA-binding protein ET 99.3 3.8E-12 8.2E-17 90.6 6.4 89 27-115 279-367 (371)
53 KOG0144 RNA-binding protein CU 99.3 3.6E-12 7.8E-17 95.7 6.3 84 32-116 123-209 (510)
54 KOG0415 Predicted peptidyl pro 99.3 6.8E-12 1.5E-16 92.3 6.9 84 29-112 235-318 (479)
55 KOG0124 Polypyrimidine tract-b 99.3 2.7E-12 5.9E-17 94.8 4.7 78 34-111 114-191 (544)
56 KOG0109 RNA-binding protein LA 99.3 6.1E-12 1.3E-16 90.3 6.1 72 34-113 3-74 (346)
57 KOG0124 Polypyrimidine tract-b 99.3 2.1E-11 4.6E-16 90.1 7.2 102 12-113 189-290 (544)
58 KOG0147 Transcriptional coacti 99.2 3.7E-11 8.1E-16 92.5 6.3 76 36-111 281-356 (549)
59 KOG4208 Nucleolar RNA-binding 99.2 8.8E-11 1.9E-15 80.6 7.3 81 32-112 48-129 (214)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.2 2.1E-10 4.5E-15 90.5 9.6 76 30-112 172-259 (509)
61 KOG4206 Spliceosomal protein s 99.2 1.9E-10 4.1E-15 80.0 7.9 76 35-113 11-90 (221)
62 KOG0127 Nucleolar protein fibr 99.2 1.2E-10 2.6E-15 89.9 7.5 83 32-114 4-86 (678)
63 KOG0131 Splicing factor 3b, su 99.2 9.1E-11 2E-15 79.1 5.9 87 30-116 93-180 (203)
64 KOG0123 Polyadenylate-binding 99.1 3.4E-10 7.4E-15 85.8 8.6 79 34-115 77-155 (369)
65 KOG4212 RNA-binding protein hn 99.1 2.7E-10 5.9E-15 86.0 7.1 77 29-110 532-608 (608)
66 PF04059 RRM_2: RNA recognitio 99.1 2.8E-09 6.1E-14 65.9 9.5 79 33-111 1-85 (97)
67 KOG0110 RNA-binding protein (R 99.1 1.5E-10 3.2E-15 91.5 4.4 81 33-113 613-693 (725)
68 KOG0109 RNA-binding protein LA 99.1 3.2E-10 6.9E-15 81.6 5.5 77 30-114 75-151 (346)
69 KOG0132 RNA polymerase II C-te 99.0 8.8E-10 1.9E-14 88.1 7.9 78 33-116 421-498 (894)
70 KOG0153 Predicted RNA-binding 99.0 2E-09 4.3E-14 79.1 8.7 75 32-112 227-302 (377)
71 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.6E-09 3.5E-14 84.4 7.9 82 31-112 403-484 (940)
72 KOG0123 Polyadenylate-binding 99.0 2.2E-09 4.8E-14 81.5 8.3 75 34-114 2-76 (369)
73 KOG0110 RNA-binding protein (R 99.0 2.8E-09 6.2E-14 84.5 8.4 76 36-111 518-596 (725)
74 KOG4205 RNA-binding protein mu 99.0 2.5E-09 5.5E-14 79.0 7.5 81 33-114 97-177 (311)
75 KOG0533 RRM motif-containing p 98.9 6.6E-09 1.4E-13 74.2 8.7 80 32-112 82-161 (243)
76 KOG4209 Splicing factor RNPS1, 98.9 7.2E-09 1.6E-13 73.9 8.8 86 28-114 96-181 (231)
77 KOG4205 RNA-binding protein mu 98.9 1.9E-09 4.2E-14 79.6 5.4 84 32-116 5-88 (311)
78 KOG4211 Splicing factor hnRNP- 98.8 2.7E-08 5.8E-13 76.2 8.2 82 29-114 6-87 (510)
79 KOG1457 RNA binding protein (c 98.8 1.2E-07 2.6E-12 66.3 10.1 85 30-114 31-119 (284)
80 KOG0106 Alternative splicing f 98.8 1.7E-08 3.6E-13 70.8 5.7 72 34-113 2-73 (216)
81 KOG1548 Transcription elongati 98.8 5.3E-08 1.1E-12 71.8 8.1 79 33-112 134-220 (382)
82 KOG0146 RNA-binding protein ET 98.7 3.4E-08 7.3E-13 70.7 5.8 81 32-113 18-101 (371)
83 KOG4211 Splicing factor hnRNP- 98.7 6E-08 1.3E-12 74.3 6.8 80 31-111 101-180 (510)
84 KOG1995 Conserved Zn-finger pr 98.7 8.4E-08 1.8E-12 71.0 6.9 83 32-114 65-155 (351)
85 KOG0226 RNA-binding proteins [ 98.6 3E-08 6.5E-13 70.3 3.7 84 30-113 187-270 (290)
86 KOG4660 Protein Mei2, essentia 98.6 3.8E-08 8.2E-13 76.4 4.2 70 32-106 74-143 (549)
87 KOG4454 RNA binding protein (R 98.6 1.5E-08 3.4E-13 70.4 1.8 78 32-111 8-85 (267)
88 KOG1190 Polypyrimidine tract-b 98.4 3.2E-06 7E-11 63.9 8.8 76 33-113 297-373 (492)
89 KOG0120 Splicing factor U2AF, 98.4 4.5E-07 9.7E-12 70.7 4.2 83 29-111 285-367 (500)
90 PF08777 RRM_3: RNA binding mo 98.3 2.7E-06 5.9E-11 53.6 5.6 70 34-109 2-76 (105)
91 KOG0147 Transcriptional coacti 98.2 5.5E-07 1.2E-11 69.9 1.7 82 29-111 175-256 (549)
92 KOG0151 Predicted splicing reg 98.2 3.5E-06 7.7E-11 67.5 6.1 82 30-111 171-255 (877)
93 KOG4849 mRNA cleavage factor I 98.2 4.8E-06 1.1E-10 61.9 6.4 76 33-108 80-157 (498)
94 KOG4210 Nuclear localization s 98.2 2.1E-06 4.5E-11 63.3 4.4 83 33-116 184-267 (285)
95 KOG0105 Alternative splicing f 98.2 5.3E-05 1.1E-09 51.8 10.1 63 32-101 114-176 (241)
96 KOG1457 RNA binding protein (c 98.1 4.6E-06 9.9E-11 58.5 5.0 65 32-100 209-273 (284)
97 KOG0106 Alternative splicing f 98.1 3.2E-06 6.9E-11 59.4 3.0 73 29-109 95-167 (216)
98 KOG4206 Spliceosomal protein s 98.1 3E-05 6.6E-10 54.3 7.8 78 29-111 142-220 (221)
99 KOG4307 RNA binding protein RB 98.0 3.3E-05 7.2E-10 62.1 8.5 79 31-109 864-943 (944)
100 PF11608 Limkain-b1: Limkain b 98.0 3.7E-05 8E-10 46.0 6.6 68 34-111 3-75 (90)
101 KOG1456 Heterogeneous nuclear 98.0 0.00019 4.2E-09 54.0 10.9 69 39-112 128-198 (494)
102 KOG1365 RNA-binding protein Fu 98.0 1.8E-05 3.9E-10 59.5 5.3 79 32-111 279-360 (508)
103 COG5175 MOT2 Transcriptional r 97.8 8.5E-05 1.8E-09 55.2 6.9 78 34-111 115-201 (480)
104 KOG1548 Transcription elongati 97.8 0.00018 4E-09 53.5 8.6 80 30-113 262-352 (382)
105 KOG3152 TBP-binding protein, a 97.8 1.3E-05 2.8E-10 57.2 2.2 72 33-104 74-157 (278)
106 KOG1190 Polypyrimidine tract-b 97.8 2.2E-05 4.7E-10 59.5 3.2 77 29-111 24-102 (492)
107 KOG1456 Heterogeneous nuclear 97.7 0.00035 7.7E-09 52.6 8.8 77 31-112 285-362 (494)
108 KOG1855 Predicted RNA-binding 97.7 4.7E-05 1E-09 58.0 3.9 79 29-107 227-318 (484)
109 KOG0120 Splicing factor U2AF, 97.6 0.00031 6.8E-09 55.2 7.3 62 50-111 426-490 (500)
110 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.0003 6.5E-09 38.7 4.9 52 34-92 2-53 (53)
111 PF10309 DUF2414: Protein of u 97.5 0.00085 1.8E-08 38.0 6.7 54 34-95 6-62 (62)
112 KOG2314 Translation initiation 97.5 0.00075 1.6E-08 53.3 8.0 76 33-109 58-140 (698)
113 KOG0129 Predicted RNA-binding 97.4 0.00054 1.2E-08 53.5 6.7 67 28-94 365-432 (520)
114 PF08952 DUF1866: Domain of un 97.3 0.0025 5.5E-08 42.2 7.8 77 28-113 22-107 (146)
115 KOG1365 RNA-binding protein Fu 97.2 0.0019 4.2E-08 49.0 6.9 74 35-110 163-240 (508)
116 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.004 8.7E-08 38.8 6.9 76 34-111 7-90 (100)
117 PF08675 RNA_bind: RNA binding 97.1 0.004 8.6E-08 37.3 6.4 57 32-96 7-63 (87)
118 KOG4307 RNA binding protein RB 96.9 0.00081 1.8E-08 54.4 3.1 79 29-108 430-509 (944)
119 KOG0129 Predicted RNA-binding 96.8 0.008 1.7E-07 47.1 7.8 65 31-96 257-327 (520)
120 KOG0128 RNA-binding protein SA 96.8 0.0015 3.3E-08 53.8 3.6 79 33-112 736-814 (881)
121 KOG1996 mRNA splicing factor [ 96.8 0.0081 1.8E-07 44.1 6.9 63 48-110 301-364 (378)
122 KOG2202 U2 snRNP splicing fact 96.6 0.0015 3.2E-08 46.9 2.0 54 56-110 92-145 (260)
123 PRK11634 ATP-dependent RNA hel 96.5 0.032 7E-07 45.8 9.9 62 42-112 496-562 (629)
124 PF07576 BRAP2: BRCA1-associat 96.2 0.072 1.6E-06 33.8 7.9 68 33-102 12-81 (110)
125 KOG4660 Protein Mei2, essentia 96.1 0.014 3.1E-07 46.1 5.4 79 33-111 388-471 (549)
126 KOG2416 Acinus (induces apopto 96.1 0.0067 1.5E-07 48.5 3.4 74 32-111 443-520 (718)
127 KOG0128 RNA-binding protein SA 96.1 0.00034 7.4E-09 57.4 -3.8 65 34-98 668-732 (881)
128 KOG0112 Large RNA-binding prot 95.9 0.014 3E-07 48.7 4.6 75 31-111 453-529 (975)
129 KOG2193 IGF-II mRNA-binding pr 95.8 0.0085 1.8E-07 46.1 3.0 75 34-114 2-77 (584)
130 KOG2591 c-Mpl binding protein, 95.8 0.029 6.2E-07 44.7 5.7 69 31-106 173-245 (684)
131 KOG0115 RNA-binding protein p5 95.7 0.024 5.1E-07 40.9 4.7 62 34-96 32-93 (275)
132 KOG4676 Splicing factor, argin 95.6 0.021 4.6E-07 43.5 4.4 75 34-109 8-85 (479)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.019 4.1E-07 39.5 3.9 80 32-111 6-96 (176)
134 PF03880 DbpA: DbpA RNA bindin 95.5 0.1 2.3E-06 30.5 6.2 59 43-110 11-74 (74)
135 KOG3973 Uncharacterized conser 95.4 0.024 5.3E-07 42.7 4.1 6 142-147 455-460 (465)
136 KOG2068 MOT2 transcription fac 95.2 0.0066 1.4E-07 45.2 0.6 78 34-111 78-161 (327)
137 KOG0804 Cytoplasmic Zn-finger 94.6 0.19 4.1E-06 39.2 7.0 68 33-102 74-142 (493)
138 PF15023 DUF4523: Protein of u 94.6 0.43 9.3E-06 31.7 7.6 72 33-112 86-161 (166)
139 KOG4574 RNA-binding protein (c 94.1 0.05 1.1E-06 45.4 3.0 74 34-113 299-374 (1007)
140 KOG2135 Proteins containing th 93.8 0.043 9.3E-07 42.9 2.2 68 38-112 377-445 (526)
141 KOG4285 Mitotic phosphoprotein 93.6 0.32 7E-06 36.1 6.2 68 36-111 200-268 (350)
142 KOG2253 U1 snRNP complex, subu 93.5 0.068 1.5E-06 43.3 2.7 73 28-109 35-107 (668)
143 PF11767 SET_assoc: Histone ly 93.2 0.91 2E-05 26.0 6.6 55 44-107 11-65 (66)
144 KOG0112 Large RNA-binding prot 93.2 0.019 4.2E-07 47.9 -0.7 78 32-110 371-448 (975)
145 PF04847 Calcipressin: Calcipr 93.1 0.55 1.2E-05 32.6 6.5 61 46-112 8-70 (184)
146 KOG3973 Uncharacterized conser 89.1 0.52 1.1E-05 35.8 3.4 8 140-147 377-384 (465)
147 KOG4210 Nuclear localization s 88.5 0.31 6.6E-06 36.2 1.8 76 32-107 87-162 (285)
148 KOG4410 5-formyltetrahydrofola 83.6 4.4 9.5E-05 30.2 5.6 47 33-85 330-377 (396)
149 KOG4676 Splicing factor, argin 83.2 0.31 6.7E-06 37.5 -0.4 67 30-101 148-214 (479)
150 KOG2193 IGF-II mRNA-binding pr 80.8 0.16 3.5E-06 39.4 -2.6 74 34-111 81-155 (584)
151 smart00596 PRE_C2HC PRE_C2HC d 80.1 3.5 7.5E-05 23.8 3.3 61 48-111 2-63 (69)
152 PF03468 XS: XS domain; Inter 78.0 9.1 0.0002 24.5 5.1 57 34-93 9-75 (116)
153 KOG2318 Uncharacterized conser 77.2 25 0.00054 28.9 8.2 80 30-109 171-304 (650)
154 KOG4483 Uncharacterized conser 75.6 9.1 0.0002 29.9 5.3 55 33-94 391-446 (528)
155 PF07530 PRE_C2HC: Associated 75.6 6.8 0.00015 22.5 3.7 61 48-111 2-63 (68)
156 COG4907 Predicted membrane pro 75.3 3 6.5E-05 33.1 2.7 14 85-98 525-538 (595)
157 KOG3262 H/ACA small nucleolar 68.4 31 0.00067 24.1 6.1 8 50-57 94-101 (215)
158 KOG2295 C2H2 Zn-finger protein 67.8 1.1 2.4E-05 36.1 -1.1 70 33-102 231-300 (648)
159 PF10567 Nab6_mRNP_bdg: RNA-re 66.6 20 0.00043 26.8 5.2 76 34-109 16-104 (309)
160 PRK10629 EnvZ/OmpR regulon mod 65.5 35 0.00075 22.2 7.5 73 31-111 33-109 (127)
161 PF07292 NID: Nmi/IFP 35 domai 65.4 3.9 8.3E-05 24.9 1.2 26 30-55 49-74 (88)
162 KOG4019 Calcineurin-mediated s 64.2 6.9 0.00015 27.1 2.3 72 34-111 11-88 (193)
163 COG4907 Predicted membrane pro 58.8 12 0.00025 30.0 3.0 9 88-96 525-533 (595)
164 PRK10590 ATP-dependent RNA hel 57.9 39 0.00085 26.7 5.9 7 76-82 343-349 (456)
165 KOG4213 RNA-binding protein La 55.8 26 0.00057 24.3 4.0 49 46-94 119-169 (205)
166 PRK11901 hypothetical protein; 51.9 83 0.0018 24.0 6.4 64 29-97 241-306 (327)
167 KOG4008 rRNA processing protei 48.2 19 0.00042 26.1 2.5 35 29-63 36-70 (261)
168 PRK10905 cell division protein 47.0 1.3E+02 0.0028 23.0 7.0 63 30-97 244-308 (328)
169 PRK14548 50S ribosomal protein 45.3 67 0.0015 19.3 5.5 54 38-94 25-80 (84)
170 PF02714 DUF221: Domain of unk 42.4 43 0.00093 25.0 3.8 33 78-112 1-33 (325)
171 TIGR03636 L23_arch archaeal ri 41.4 75 0.0016 18.7 5.6 56 36-94 16-73 (77)
172 PF15513 DUF4651: Domain of un 41.0 68 0.0015 18.1 3.6 18 48-65 9-26 (62)
173 COG5193 LHP1 La protein, small 41.0 14 0.0003 28.9 1.0 59 34-92 175-243 (438)
174 PF11823 DUF3343: Protein of u 40.5 53 0.0011 18.7 3.3 26 77-102 3-28 (73)
175 KOG0116 RasGAP SH3 binding pro 40.4 38 0.00082 26.8 3.3 13 84-96 301-313 (419)
176 KOG3262 H/ACA small nucleolar 36.8 58 0.0012 22.8 3.3 18 48-65 89-106 (215)
177 COG0724 RNA-binding proteins ( 36.1 69 0.0015 22.2 4.0 39 30-68 222-260 (306)
178 KOG1295 Nonsense-mediated deca 35.7 64 0.0014 25.1 3.8 67 34-100 8-77 (376)
179 COG0030 KsgA Dimethyladenosine 32.5 82 0.0018 23.2 3.8 34 33-66 95-128 (259)
180 PHA01632 hypothetical protein 31.5 57 0.0012 18.0 2.2 21 36-56 19-39 (64)
181 PRK02302 hypothetical protein; 30.1 1.3E+02 0.0029 18.3 3.9 39 53-100 22-60 (89)
182 PF12687 DUF3801: Protein of u 29.6 2.1E+02 0.0044 20.2 6.2 55 45-101 39-96 (204)
183 KOG2891 Surface glycoprotein [ 29.1 72 0.0016 23.9 3.0 68 33-100 149-247 (445)
184 COG1512 Beta-propeller domains 29.0 1.4E+02 0.0031 22.2 4.6 9 40-48 119-127 (271)
185 PRK02886 hypothetical protein; 28.7 1.4E+02 0.0031 18.1 3.9 39 53-100 20-58 (87)
186 PF06273 eIF-4B: Plant specifi 28.7 66 0.0014 26.0 2.9 9 76-84 62-70 (492)
187 PF09902 DUF2129: Uncharacteri 26.9 1.4E+02 0.003 17.4 3.9 39 53-100 16-54 (71)
188 PRK07772 single-stranded DNA-b 26.1 1.2E+02 0.0027 21.1 3.6 10 87-96 63-72 (186)
189 PF14893 PNMA: PNMA 26.1 56 0.0012 25.0 2.1 25 32-56 17-41 (331)
190 PRK11634 ATP-dependent RNA hel 25.7 89 0.0019 26.1 3.4 9 85-93 501-509 (629)
191 PF12287 Caprin-1_C: Cytoplasm 23.8 91 0.002 23.6 2.8 6 135-140 262-267 (316)
192 COG5507 Uncharacterized conser 23.4 1.1E+02 0.0025 19.0 2.7 20 76-95 67-86 (117)
193 PF13689 DUF4154: Domain of un 22.9 2.1E+02 0.0047 18.6 4.3 59 48-111 3-61 (145)
194 PF12829 Mhr1: Transcriptional 22.0 1.4E+02 0.0031 18.2 3.0 24 75-98 51-74 (91)
195 PTZ00338 dimethyladenosine tra 21.7 1.1E+02 0.0025 22.8 3.0 22 35-56 103-124 (294)
196 PF10281 Ish1: Putative stress 21.0 1.1E+02 0.0024 15.0 2.0 17 44-60 3-19 (38)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.94 E-value=1.6e-25 Score=148.88 Aligned_cols=117 Identities=55% Similarity=0.940 Sum_probs=99.6
Q ss_pred CcccccchhhhhccCCCCCchhhHH-hhhCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEE
Q 032131 1 MAFCGKLGMLVRQNGQAPKASLINA-VRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGF 79 (147)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~af 79 (147)
|++|.+|.-++++......+..... ........++|||.|||+.+++++|+++|.+||.|..+.++.++.++++++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaF 80 (144)
T PLN03134 1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGF 80 (144)
T ss_pred CchhhhhhhhhcccccCCCCCccccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEE
Confidence 8899999999998755433222222 222345567999999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCCCCCC
Q 032131 80 VTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPPRS 117 (147)
Q Consensus 80 v~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~~~ 117 (147)
|+|.+.++|++|++.|++..|.++.|+|+++..++...
T Consensus 81 V~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~~~ 118 (144)
T PLN03134 81 VNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAP 118 (144)
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCCCC
Confidence 99999999999999999999999999999998765543
No 2
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.6e-21 Score=123.65 Aligned_cols=115 Identities=30% Similarity=0.451 Sum_probs=99.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.....++|||+||+..+++++|.++|..+|.|..|.+-.++.+..++|||||+|.+.++|+.|+..++++.+..++|.+.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 032131 109 FANDRPPRSDGGYGGGNDGSYGGNRGGYRVNYRGGDDGF 147 (147)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (147)
|+-..... ++-|++-++|.-+..++..+..+||||
T Consensus 112 ~D~GF~eG----RQyGRG~sGGqVrde~r~d~D~~rggy 146 (153)
T KOG0121|consen 112 WDAGFVEG----RQYGRGKSGGQVRDEYRTDYDPGRGGY 146 (153)
T ss_pred ccccchhh----hhhcCCCCCCeechhhhhhcCcccCcc
Confidence 98876543 222233355666778888888888887
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.80 E-value=1.6e-18 Score=129.98 Aligned_cols=82 Identities=27% Similarity=0.541 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEe
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG--RNIRVSF 109 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~ 109 (147)
..++|||.|||+.+++++|+++|.+||.|..+.++.++.+++++++|||+|.+.++|++||+.|++..+.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 34689999999999999999999999999999999998899999999999999999999999999998865 6899998
Q ss_pred ecCC
Q 032131 110 ANDR 113 (147)
Q Consensus 110 ~~~~ 113 (147)
++..
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8754
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=1.8e-17 Score=124.89 Aligned_cols=83 Identities=29% Similarity=0.512 Sum_probs=78.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
+.+|||.|||+++++++|+++|.+||.|..++++.+..++.++|||||+|.+.++|.+||..||+..+.|+.|+|.+...
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 34799999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCC
Q 032131 113 RPP 115 (147)
Q Consensus 113 ~~~ 115 (147)
++.
T Consensus 349 ~~~ 351 (352)
T TIGR01661 349 KAY 351 (352)
T ss_pred CCC
Confidence 754
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.72 E-value=1.2e-16 Score=93.39 Aligned_cols=70 Identities=41% Similarity=0.792 Sum_probs=66.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032131 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 36 i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
|||+|||+++++++|+++|.+||.+..+.+..+ .++..+++|||+|.+.++|++|++.|++..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 6788899999999999999999999999999999875
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=7e-17 Score=121.22 Aligned_cols=83 Identities=25% Similarity=0.475 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.....++|||.|||+++++++|+++|..+|.|..|+++.+..++++++||||+|.+.++|++||+.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34466899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec
Q 032131 109 FAN 111 (147)
Q Consensus 109 ~~~ 111 (147)
+++
T Consensus 183 ~a~ 185 (346)
T TIGR01659 183 YAR 185 (346)
T ss_pred ccc
Confidence 764
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=8.8e-17 Score=121.12 Aligned_cols=83 Identities=30% Similarity=0.579 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+..+|||+|||..+++++|+++|.+||.|..|+++.++.+++++|||||+|.+.++|++||+.|++..+.++.|.|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 032131 112 DRP 114 (147)
Q Consensus 112 ~~~ 114 (147)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 8
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=6.5e-17 Score=112.91 Aligned_cols=82 Identities=29% Similarity=0.523 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+..+|.|.||+.++++.+|+++|..+|.|.++.+.+++.|+.++|||||.|.+.++|.+||+.|++.-++.-.|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 032131 112 DR 113 (147)
Q Consensus 112 ~~ 113 (147)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 9
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.7e-16 Score=104.88 Aligned_cols=78 Identities=32% Similarity=0.609 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.+.|||+||+..++..+|+..|..||.|..|-+-..+ .|||||+|++..+|+.|+..|++..|+|..|.|++++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4799999999999999999999999999888665543 47999999999999999999999999999999999987
Q ss_pred CCC
Q 032131 113 RPP 115 (147)
Q Consensus 113 ~~~ 115 (147)
.+.
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 654
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.70 E-value=5.9e-16 Score=122.18 Aligned_cols=75 Identities=29% Similarity=0.540 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNF--GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..++|||+||++++++++|+++|++| |.|.+|.+++ +||||+|.+.++|++||+.||+..|.++.|+|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999987654 4999999999999999999999999999999999
Q ss_pred ecCCC
Q 032131 110 ANDRP 114 (147)
Q Consensus 110 ~~~~~ 114 (147)
+++..
T Consensus 304 Akp~~ 308 (578)
T TIGR01648 304 AKPVD 308 (578)
T ss_pred ccCCC
Confidence 97643
No 11
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=9.6e-16 Score=103.33 Aligned_cols=79 Identities=23% Similarity=0.484 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..++|||+|||.++.+.+|+++|.+||.|..|.+... ...-.||||+|++..+|+.||.--++..+.+..|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4589999999999999999999999999999987543 2234699999999999999999999999999999999987
Q ss_pred CC
Q 032131 112 DR 113 (147)
Q Consensus 112 ~~ 113 (147)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 12
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.65 E-value=7.7e-16 Score=105.34 Aligned_cols=79 Identities=34% Similarity=0.615 Sum_probs=75.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.+|.|.||.+-|+.++|..+|++||.|-.|.|++|..|..++|||||.|....+|+.|+++|++..|+|+.|.|++++-
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998863
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=3e-15 Score=87.74 Aligned_cols=70 Identities=34% Similarity=0.757 Sum_probs=63.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032131 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 36 i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
|||+|||+.+++++|.++|..+|.|..+.+..++. +..+++|||+|.+.++|.+|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999999866 88999999999999999999999988999998874
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=8e-15 Score=105.14 Aligned_cols=85 Identities=28% Similarity=0.631 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
.++=+||||.-|++++++..|+..|+.||.|+.|.|++++.|++++|||||+|...-++..|.+..++.+|+++.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ecCCC
Q 032131 110 ANDRP 114 (147)
Q Consensus 110 ~~~~~ 114 (147)
...+.
T Consensus 178 ERgRT 182 (335)
T KOG0113|consen 178 ERGRT 182 (335)
T ss_pred ccccc
Confidence 76543
No 15
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=6.4e-17 Score=108.56 Aligned_cols=112 Identities=22% Similarity=0.480 Sum_probs=90.6
Q ss_pred CcccccchhhhhccCCCCCchh--hHHhhhCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEE
Q 032131 1 MAFCGKLGMLVRQNGQAPKASL--INAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFG 78 (147)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~a 78 (147)
|..+..+..+.+.+........ ....+..-.+..-|||+|||++.|+.+|.-+|++||.|..|.+++|+.||+++|||
T Consensus 1 mnplt~vk~i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFa 80 (219)
T KOG0126|consen 1 MNPLTNVKNIQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFA 80 (219)
T ss_pred CchhHHHHHHHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceE
Confidence 4444555555444322222111 23456666677899999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 79 FVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 79 fv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
|+.|++..+..-|+..||++.|.|+.|+|.....
T Consensus 81 FLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 81 FLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred EEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 9999999999999999999999999999987543
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.62 E-value=6.3e-15 Score=116.77 Aligned_cols=83 Identities=23% Similarity=0.491 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..++|||+|||+++++++|+++|+.||.|..+++.+++.+++++|||||+|.+.++|.+||+.||+..+.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 44789999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CCC
Q 032131 112 DRP 114 (147)
Q Consensus 112 ~~~ 114 (147)
.++
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 643
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.61 E-value=3.5e-15 Score=118.19 Aligned_cols=83 Identities=33% Similarity=0.612 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....++|||+|||+++++++|+++|.+||.|..|.++.++.+++++|||||+|.+.++|++||..||+..+.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ecC
Q 032131 110 AND 112 (147)
Q Consensus 110 ~~~ 112 (147)
...
T Consensus 184 p~~ 186 (612)
T TIGR01645 184 PSN 186 (612)
T ss_pred ccc
Confidence 543
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.9e-14 Score=102.74 Aligned_cols=77 Identities=23% Similarity=0.364 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.++|||+|||+.+++++|+++|..||.|.+|.++.+.. .++||||+|.+.++++.||. |++..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999988753 46899999999999999996 999999999999999875
Q ss_pred C
Q 032131 113 R 113 (147)
Q Consensus 113 ~ 113 (147)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=1.5e-14 Score=115.26 Aligned_cols=78 Identities=26% Similarity=0.536 Sum_probs=75.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 35 ~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
+|||+|||.++++++|.++|.++|.|..|+++++..+++++|||||+|.+.++|++|++.++...+.++.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999998999999999999999999999999999999999999999764
No 20
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=4.8e-15 Score=103.14 Aligned_cols=77 Identities=42% Similarity=0.818 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
++|||++|+|++..+.|+++|++||.|++..++.|+.+++++||+||+|.+.++|.+|++. .+-.|+|++..|.++.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 5899999999999999999999999999999999999999999999999999999999995 4578999998888764
No 21
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=9.2e-15 Score=93.91 Aligned_cols=84 Identities=25% Similarity=0.547 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
.+..|||.++..++++++|.+.|..||.|+.+.+..+..++..+|||+|+|.+.++|++|+..+|+..+.+.+|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCC
Q 032131 112 DRPP 115 (147)
Q Consensus 112 ~~~~ 115 (147)
...+
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 5443
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=4.9e-14 Score=81.79 Aligned_cols=72 Identities=44% Similarity=0.768 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 35 ~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
+|+|.|||..+++++|+++|.+||.+..+.+..++ +.+++++||+|.+.++|++|+..+++..+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999888765 6778999999999999999999999999999888763
No 23
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=104.88 Aligned_cols=81 Identities=30% Similarity=0.594 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
...++|+|+|||+...+-||+.+|++||.|.+|+++.+. ..+|||+||+|++.++|++|-++||+..+.|++|.|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345789999999999999999999999999999999863 568899999999999999999999999999999999988
Q ss_pred cCC
Q 032131 111 NDR 113 (147)
Q Consensus 111 ~~~ 113 (147)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 654
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.57 E-value=4e-14 Score=111.45 Aligned_cols=82 Identities=23% Similarity=0.502 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
....+|||+|||..+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|..||..|++..+.++.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cC
Q 032131 111 ND 112 (147)
Q Consensus 111 ~~ 112 (147)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 64
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=3.4e-14 Score=110.57 Aligned_cols=80 Identities=39% Similarity=0.772 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
..+|||+|||..+++++|+++|.+||.|..|.++.+..++++++||||+|.+.++|.+|+..|++..+.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 57999999999999999999999999999999999988889999999999999999999999999999999999999763
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.54 E-value=8.2e-14 Score=108.44 Aligned_cols=82 Identities=29% Similarity=0.460 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
.....+|||.|||..+++++|+++|.++|.|..|.++.++.+++++|||||+|.+.++|++||. |++..+.+++|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3446799999999999999999999999999999999998999999999999999999999998 899999999999987
Q ss_pred ecC
Q 032131 110 AND 112 (147)
Q Consensus 110 ~~~ 112 (147)
...
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 653
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=6e-14 Score=111.84 Aligned_cols=82 Identities=39% Similarity=0.648 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
....+|||.||++.+++++|+++|++||.|..++++.+ .++.++||+||+|.+.++|.+|+..||+..+.|++|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 45578999999999999999999999999999999998 67899999999999999999999999999999999999998
Q ss_pred cCC
Q 032131 111 NDR 113 (147)
Q Consensus 111 ~~~ 113 (147)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 754
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=6e-14 Score=110.94 Aligned_cols=80 Identities=28% Similarity=0.484 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEE
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN-GRNIRVS 108 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l~v~ 108 (147)
+...++|||+|||+++++++|+++|+++|.|..++++.+ .++++++||||+|.+.++|++||+.|++..+. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 78999999999999999999999999999884 6666665
Q ss_pred ee
Q 032131 109 FA 110 (147)
Q Consensus 109 ~~ 110 (147)
++
T Consensus 134 ~S 135 (578)
T TIGR01648 134 IS 135 (578)
T ss_pred cc
Confidence 43
No 29
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=1.2e-13 Score=79.89 Aligned_cols=71 Identities=39% Similarity=0.798 Sum_probs=65.6
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 38 VGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 38 v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
|.|||..+++++|+++|.++|.|..+.+..++.++.++++|||+|.+.++|.+|+..+++..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999998887778899999999999999999999999999999888763
No 30
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=1.6e-13 Score=96.72 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
...+.+|||+||++.+++++|+++|..+|.|..|.++++.. ..++|||+|.+.++++.|+. |++..|.++.|.|..
T Consensus 2 ~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 2 YPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred CCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 34568999999999999999999999999999999998743 34799999999999999996 999999999999987
Q ss_pred ecC
Q 032131 110 AND 112 (147)
Q Consensus 110 ~~~ 112 (147)
...
T Consensus 78 ~~~ 80 (243)
T PLN03121 78 WGQ 80 (243)
T ss_pred Ccc
Confidence 653
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=5.1e-14 Score=99.94 Aligned_cols=81 Identities=43% Similarity=0.779 Sum_probs=78.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 113 (147)
..|||+-|..+++.++|++.|.+||.|...++++|..|+|++||+||.|.+.++|+.||..|++.=|.+|.|+..|+..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred C
Q 032131 114 P 114 (147)
Q Consensus 114 ~ 114 (147)
+
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 6
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.5e-13 Score=96.47 Aligned_cols=82 Identities=28% Similarity=0.605 Sum_probs=75.8
Q ss_pred hhhCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 032131 26 VRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNI 105 (147)
Q Consensus 26 ~~~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 105 (147)
....+++.++||++||+..+++++|++.|..||.|.+|++.+++ ||+||.|.++|.|.+||..+|+.++.|+.+
T Consensus 157 ~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~V 230 (321)
T KOG0148|consen 157 YNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLV 230 (321)
T ss_pred hccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEE
Confidence 44567788999999999999999999999999999999998874 799999999999999999999999999999
Q ss_pred EEEeecCC
Q 032131 106 RVSFANDR 113 (147)
Q Consensus 106 ~v~~~~~~ 113 (147)
+|.|.+..
T Consensus 231 kCsWGKe~ 238 (321)
T KOG0148|consen 231 RCSWGKEG 238 (321)
T ss_pred EEeccccC
Confidence 99998754
No 33
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-14 Score=99.89 Aligned_cols=86 Identities=40% Similarity=0.664 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
+....++|||++|..++++.-|...|-+||.|..|.++.|..++++++|+||+|...++|.+||..||+.++.|+.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 032131 109 FANDRP 114 (147)
Q Consensus 109 ~~~~~~ 114 (147)
++++..
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 998653
No 34
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=1.3e-13 Score=105.11 Aligned_cols=78 Identities=23% Similarity=0.464 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCH--HHHHHHHHHhcCCeeCCeEEEEE
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSN--ESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...-+|||+||++.+++++|...|..||.|..+.+++ .++ +|||||+|.+. .++.+||..|++..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457999999999999999999999999999999984 445 89999999987 78999999999999999999999
Q ss_pred eecC
Q 032131 109 FAND 112 (147)
Q Consensus 109 ~~~~ 112 (147)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8764
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.4e-13 Score=103.40 Aligned_cols=82 Identities=26% Similarity=0.467 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee-CCeEEEEE
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL-NGRNIRVS 108 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~-~g~~l~v~ 108 (147)
+.-++-|||+.||.++.+++|.-+|++.|.|-.++++.++.++.++|||||.|.+.++|++||+.||+.+| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999988 58888887
Q ss_pred eec
Q 032131 109 FAN 111 (147)
Q Consensus 109 ~~~ 111 (147)
.+.
T Consensus 160 ~Sv 162 (506)
T KOG0117|consen 160 VSV 162 (506)
T ss_pred Eee
Confidence 653
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.2e-13 Score=103.80 Aligned_cols=78 Identities=28% Similarity=0.479 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.+...+.|||+||+.++|++.|+++|.+||.|++|+.++| ||||.|.+.++|.+||+.+|+..|.|..|.|.
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVT 326 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEE
Confidence 5556788999999999999999999999999999988766 99999999999999999999999999999999
Q ss_pred eecCCC
Q 032131 109 FANDRP 114 (147)
Q Consensus 109 ~~~~~~ 114 (147)
++++..
T Consensus 327 LAKP~~ 332 (506)
T KOG0117|consen 327 LAKPVD 332 (506)
T ss_pred ecCChh
Confidence 998753
No 37
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=2.2e-13 Score=83.82 Aligned_cols=80 Identities=20% Similarity=0.432 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
+....-+||.|||+.+|.++..++|.+||.|..|++-..+. .+|.|||.|++..+|.+|+++|.+..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34457899999999999999999999999999998876544 368899999999999999999999999999999987
Q ss_pred ecC
Q 032131 110 AND 112 (147)
Q Consensus 110 ~~~ 112 (147)
..+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 654
No 38
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.48 E-value=4.8e-13 Score=101.90 Aligned_cols=81 Identities=27% Similarity=0.458 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
...+|||.|||.+++..+|+++|..||.|+...+......++..+|+||+|.+.++++.+|.+ +-..+.+++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 445699999999999999999999999999987776554455558999999999999999996 5678899999999877
Q ss_pred CC
Q 032131 112 DR 113 (147)
Q Consensus 112 ~~ 113 (147)
+.
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 54
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.48 E-value=1e-12 Score=76.55 Aligned_cols=74 Identities=39% Similarity=0.814 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 35 ~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
+|+|.|||..+++++|+++|..+|.|..+.+..+..+ ..++++||+|.+.++|..|+..+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4889999999999999999999999999988876543 6788999999999999999999999999999988764
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.48 E-value=3.3e-13 Score=101.48 Aligned_cols=79 Identities=24% Similarity=0.464 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSN-FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
.+.+||+|||++..|++|++++.+ -|.|.+|.+..| ..+|+++.|.|+|.++|.+++|++.|+...+.+++|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 345999999999999999999975 678999999988 679999999999999999999999999999999999999876
Q ss_pred C
Q 032131 112 D 112 (147)
Q Consensus 112 ~ 112 (147)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 41
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.47 E-value=9.5e-14 Score=93.36 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
....+|||+||+..++++.|+++|-+.|.|..+.++++..+.+++||||++|.+.++|+=|++.|+..++.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 032131 111 N 111 (147)
Q Consensus 111 ~ 111 (147)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.46 E-value=2.5e-13 Score=104.01 Aligned_cols=82 Identities=33% Similarity=0.720 Sum_probs=78.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 113 (147)
+.|||+|+|+++++++|.++|.+.|.|..++++.|..+++++||+|++|.+.+++..|++.|++.++.+++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 032131 114 PP 115 (147)
Q Consensus 114 ~~ 115 (147)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=7.2e-13 Score=95.28 Aligned_cols=79 Identities=42% Similarity=0.811 Sum_probs=76.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..+|||+|||+++++++|.++|.++|.+..+.+..++.+++.+++|||+|.+.+++..|+..+++..+.++.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999999965
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=5.8e-13 Score=94.34 Aligned_cols=84 Identities=30% Similarity=0.570 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
.+..+.+.|.=||..+++++++.+|...|.|++|++++|+-++.+.||+||.|..+++|++|+..||+..+..+.|+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44556788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 032131 110 ANDR 113 (147)
Q Consensus 110 ~~~~ 113 (147)
+++.
T Consensus 118 ARPS 121 (360)
T KOG0145|consen 118 ARPS 121 (360)
T ss_pred ccCC
Confidence 9864
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=1.4e-12 Score=102.37 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 31 QSQTKLFVGGLSW-GTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 31 ~~~~~i~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
.+.++|||.|||+ .+++++|+++|+.||.|..|+++.++ +++|||+|.+.++|+.||..||+..|.|++|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3567999999998 69999999999999999999998763 47999999999999999999999999999999998
Q ss_pred ecCC
Q 032131 110 ANDR 113 (147)
Q Consensus 110 ~~~~ 113 (147)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8653
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=2.5e-12 Score=100.88 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHh--cCCeeCCeEEEEEee
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM--DGQELNGRNIRVSFA 110 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l--~~~~~~g~~l~v~~~ 110 (147)
.++|||+|||+.+++++|+++|++||.|..+.++.+ +++|||+|.+.++|++|+..| ++..+.|++|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 478999999999999999999999999999988754 469999999999999999975 678999999999999
Q ss_pred cCCC
Q 032131 111 NDRP 114 (147)
Q Consensus 111 ~~~~ 114 (147)
..+.
T Consensus 76 ~~~~ 79 (481)
T TIGR01649 76 TSQE 79 (481)
T ss_pred CCcc
Confidence 7653
No 47
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=3.6e-12 Score=90.37 Aligned_cols=83 Identities=35% Similarity=0.546 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
..+..|||=||.+++++.-|+++|.+||.|..|++++|..+.+.+||+||.+.+.++|..||..||+..+.++.|.|.+.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cCC
Q 032131 111 NDR 113 (147)
Q Consensus 111 ~~~ 113 (147)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 654
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=7.4e-13 Score=99.29 Aligned_cols=84 Identities=29% Similarity=0.562 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee---CCeEEE
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL---NGRNIR 106 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~---~g~~l~ 106 (147)
..+.-.+||+-||..++|.+|+++|++||.|.+|.+++|+.++.++|+|||.|.+.++|.+|+..||+... ..++|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 34456899999999999999999999999999999999999999999999999999999999999998744 347888
Q ss_pred EEeecCC
Q 032131 107 VSFANDR 113 (147)
Q Consensus 107 v~~~~~~ 113 (147)
|+++...
T Consensus 111 vk~Ad~E 117 (510)
T KOG0144|consen 111 VKYADGE 117 (510)
T ss_pred ecccchh
Confidence 8887653
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=2.2e-12 Score=99.33 Aligned_cols=82 Identities=29% Similarity=0.586 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+.+.|+|+|||+.+...+|+.+|+.||.|..|.+++. ..++-+|||||.|.+..+|..||+.+|+.+|.|++|.|.|+.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3688999999999999999999999999999999865 557777999999999999999999999999999999999987
Q ss_pred CCC
Q 032131 112 DRP 114 (147)
Q Consensus 112 ~~~ 114 (147)
++.
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 654
No 50
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=7.4e-12 Score=70.15 Aligned_cols=56 Identities=39% Similarity=0.797 Sum_probs=50.1
Q ss_pred HHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 50 LKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 50 l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
|.++|++||.|..+.+..++ +++|||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999887653 469999999999999999999999999999999985
No 51
>smart00361 RRM_1 RNA recognition motif.
Probab=99.33 E-value=1.5e-11 Score=72.03 Aligned_cols=61 Identities=23% Similarity=0.567 Sum_probs=53.6
Q ss_pred HHHHHHHhh----ccCCeeEEE-EEecCCC--CccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032131 47 DSSLKEAFS----NFGDITEAK-VITERES--GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 47 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
+++|+++|. +||.|.++. ++.++.+ +.++|++||+|.+.++|.+|+..||+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999985 6666555 888999999999999999999999999999999876
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.8e-12 Score=90.58 Aligned_cols=89 Identities=29% Similarity=0.488 Sum_probs=82.3
Q ss_pred hhCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032131 27 RFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 27 ~~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
...-+++|.|||=.||.+..+.+|.+.|..||.|.+.++..|..|..+++|+||.|.+..+++.||..||++.|..++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 032131 107 VSFANDRPP 115 (147)
Q Consensus 107 v~~~~~~~~ 115 (147)
|.+.+++..
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 998877653
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=3.6e-12 Score=95.65 Aligned_cols=84 Identities=32% Similarity=0.594 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCe-e--CCeEEEEE
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQE-L--NGRNIRVS 108 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~-~--~g~~l~v~ 108 (147)
..+.+||+-|+..++|++++++|.+||.|++|.++++ ..+.++|++||.|.+.+.|..||+.||+.. + +..+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 3578999999999999999999999999999999998 568999999999999999999999999883 3 56789999
Q ss_pred eecCCCCC
Q 032131 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
++....++
T Consensus 202 FADtqkdk 209 (510)
T KOG0144|consen 202 FADTQKDK 209 (510)
T ss_pred ecccCCCc
Confidence 99876554
No 54
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.8e-12 Score=92.30 Aligned_cols=84 Identities=32% Similarity=0.537 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
+.++...+||..|.+-++.++|.-+|+.||.|..|.++++..++.+..||||+|.+.+++++|.-+|++..|.++.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eecC
Q 032131 109 FAND 112 (147)
Q Consensus 109 ~~~~ 112 (147)
++.+
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 7653
No 55
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=2.7e-12 Score=94.82 Aligned_cols=78 Identities=35% Similarity=0.664 Sum_probs=75.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
++|||+.|.+++.++.|+..|..||.|++|.+.+|+.|+++++||||+|+-.|.|+-|++.||+..+.|+.|+|.+..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999997654
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.29 E-value=6.1e-12 Score=90.29 Aligned_cols=72 Identities=28% Similarity=0.607 Sum_probs=68.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 113 (147)
..+||+|||.++++.+|+.+|++||.|.+|.++++ |+||..++.+.++.||..||+.+|.|..|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46899999999999999999999999999999876 9999999999999999999999999999999988766
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2.1e-11 Score=90.14 Aligned_cols=102 Identities=21% Similarity=0.423 Sum_probs=87.0
Q ss_pred hccCCCCCchhhHHhhhCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHH
Q 032131 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA 91 (147)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 91 (147)
++++.+......+........-.+|||..+.++.+++||+..|+.||.|.+|.+-+.....+++||+|++|.+.++...|
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 33444444455555555556668999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHhcCCeeCCeEEEEEeecCC
Q 032131 92 QSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 92 i~~l~~~~~~g~~l~v~~~~~~ 113 (147)
|..||-+.+.|..|+|-.+-.+
T Consensus 269 iasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 269 IASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred hhhcchhhcccceEecccccCC
Confidence 9999999999999999776543
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.19 E-value=3.7e-11 Score=92.50 Aligned_cols=76 Identities=37% Similarity=0.724 Sum_probs=72.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 36 i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+||+||..++++..|+.+|+.||.|..|.+.++..++..+||+|++|.+.+.|.+|+..||+++|.|+.|+|..-.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 8999999999999999999999999999999998899999999999999999999999999999999999987644
No 59
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.19 E-value=8.8e-11 Score=80.60 Aligned_cols=81 Identities=21% Similarity=0.408 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNF-GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
...-+++..+|..+.+.++..+|.++ |.+..+++.+++.||.++|||||+|++.+.|+-|.+.||+..+.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34568899999999999999999998 67788888899999999999999999999999999999999999999988765
Q ss_pred cC
Q 032131 111 ND 112 (147)
Q Consensus 111 ~~ 112 (147)
.+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 43
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.17 E-value=2.1e-10 Score=90.53 Aligned_cols=76 Identities=17% Similarity=0.412 Sum_probs=61.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc------------CCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcC
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNF------------GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDG 97 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~------------g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~ 97 (147)
.....+|||+|||+.+++++|+++|.++ ..|..+.+ .+.++||||+|.+.++|..||. |++
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 3456789999999999999999999875 12233322 3346899999999999999996 999
Q ss_pred CeeCCeEEEEEeecC
Q 032131 98 QELNGRNIRVSFAND 112 (147)
Q Consensus 98 ~~~~g~~l~v~~~~~ 112 (147)
..+.|+.|+|.....
T Consensus 245 ~~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 245 IIYSNVFLKIRRPHD 259 (509)
T ss_pred eEeeCceeEecCccc
Confidence 999999999976543
No 61
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.16 E-value=1.9e-10 Score=80.03 Aligned_cols=76 Identities=30% Similarity=0.559 Sum_probs=69.6
Q ss_pred eEEEcCCCCCCCHHHHHH----HhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 35 KLFVGGLSWGTDDSSLKE----AFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 35 ~i~v~nlp~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
+|||.||+..+..++|+. +|++||.|..|... .+.+.+|-|||.|.+.+.|-.|+..|+|+.+.|++++|.++
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 999999999999998877 99999999998665 35778899999999999999999999999999999999998
Q ss_pred cCC
Q 032131 111 NDR 113 (147)
Q Consensus 111 ~~~ 113 (147)
++.
T Consensus 88 ~s~ 90 (221)
T KOG4206|consen 88 KSD 90 (221)
T ss_pred cCc
Confidence 754
No 62
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.2e-10 Score=89.92 Aligned_cols=83 Identities=35% Similarity=0.568 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
++.||||++||+.++.++|.++|+..|.|..+.++.++.+..++||+||.|.-.+++++|++.+.+..|.|+.|.|..+.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34899999999999999999999999999999999998888899999999999999999999999999999999999887
Q ss_pred CCC
Q 032131 112 DRP 114 (147)
Q Consensus 112 ~~~ 114 (147)
.+.
T Consensus 84 ~R~ 86 (678)
T KOG0127|consen 84 KRA 86 (678)
T ss_pred ccc
Confidence 653
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.15 E-value=9.1e-11 Score=79.15 Aligned_cols=87 Identities=34% Similarity=0.620 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITE-AKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+..+||.||.+++++..|.+.|+.+|.+.. .+++++..++..++++|+.|.+.+.+.+|+..+++..+..+++.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 344578999999999999999999999998755 4788888999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 032131 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
++.....+
T Consensus 173 ya~k~~~k 180 (203)
T KOG0131|consen 173 YAFKKDTK 180 (203)
T ss_pred EEEecCCC
Confidence 99865443
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.4e-10 Score=85.85 Aligned_cols=79 Identities=37% Similarity=0.648 Sum_probs=71.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 113 (147)
..|||.||++.++..+|.++|..||.|.+|++..+.. + ++|| ||+|.+.++|.+||..+|+..+.++.|.|.....+
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 4499999999999999999999999999999998854 4 8899 99999999999999999999999999999876654
Q ss_pred CC
Q 032131 114 PP 115 (147)
Q Consensus 114 ~~ 115 (147)
+.
T Consensus 154 ~e 155 (369)
T KOG0123|consen 154 EE 155 (369)
T ss_pred hh
Confidence 43
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.10 E-value=2.7e-10 Score=86.03 Aligned_cols=77 Identities=30% Similarity=0.554 Sum_probs=68.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
++...++|+|+|||.++||+.|++-|.++|.|.+..++ ..+++++ .|.|.++++|++|+..|++.++.++.|+|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 44566899999999999999999999999999988774 4466765 899999999999999999999999999998
Q ss_pred ee
Q 032131 109 FA 110 (147)
Q Consensus 109 ~~ 110 (147)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 63
No 66
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.07 E-value=2.8e-09 Score=65.90 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC----CeEEE
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNF--GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN----GRNIR 106 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~----g~~l~ 106 (147)
++||.|+|||...+.+.|.+++.+. |....+.++.|..+..+.|||||.|.+.+.+.+..+.+++..+. .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 4789999999999999999998663 56778888999888999999999999999999999999999884 45667
Q ss_pred EEeec
Q 032131 107 VSFAN 111 (147)
Q Consensus 107 v~~~~ 111 (147)
|.+|+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 77765
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.5e-10 Score=91.53 Aligned_cols=81 Identities=25% Similarity=0.525 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.+.|+|.|||+..+-.+++.+|..||.+..|+++.....+.++|||||+|-+..+|.+|+..|..+.+.|+.|.++|++.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 46899999999999999999999999999999988756677899999999999999999999999999999999999875
Q ss_pred C
Q 032131 113 R 113 (147)
Q Consensus 113 ~ 113 (147)
.
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 3
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.06 E-value=3.2e-10 Score=81.60 Aligned_cols=77 Identities=29% Similarity=0.589 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
+...++++|+||.+.++..+++..|++||.+..+.++++ |+||.|.-.++|..|+.-|++.++.|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 445689999999999999999999999999999999876 999999999999999999999999999999999
Q ss_pred ecCCC
Q 032131 110 ANDRP 114 (147)
Q Consensus 110 ~~~~~ 114 (147)
+.++-
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 88753
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.04 E-value=8.8e-10 Score=88.08 Aligned_cols=78 Identities=23% Similarity=0.515 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.+||||+.|+..+++.+|.++|++||.|.+|.++.. +++|||.+...++|++|+.+|.+..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 478999999999999999999999999999988764 56999999999999999999999999999999999987
Q ss_pred CCCC
Q 032131 113 RPPR 116 (147)
Q Consensus 113 ~~~~ 116 (147)
+..+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 6543
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=2e-09 Score=79.14 Aligned_cols=75 Identities=23% Similarity=0.530 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC-eeCCeEEEEEee
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ-ELNGRNIRVSFA 110 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~-~~~g~~l~v~~~ 110 (147)
.-.++||++|...+++.+|++.|.+||.|.++.+...+ +.|||+|.+.++|+.|.+++-+. .|+|.+|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 34689999999999999999999999999999887763 48999999999999988865544 669999999999
Q ss_pred cC
Q 032131 111 ND 112 (147)
Q Consensus 111 ~~ 112 (147)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.00 E-value=1.6e-09 Score=84.38 Aligned_cols=82 Identities=35% Similarity=0.530 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
..++.+||.+|...+...+|+.+|.+||.|.-.+++.+..+...++|+||++.+.++|.++|..||.++|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34567999999998888999999999999999989888778888899999999999999999999999999999999887
Q ss_pred cC
Q 032131 111 ND 112 (147)
Q Consensus 111 ~~ 112 (147)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 63
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.2e-09 Score=81.49 Aligned_cols=75 Identities=25% Similarity=0.487 Sum_probs=69.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 113 (147)
..+||+ +.+++..|.++|..+|.+.++++.++. + +.|||||.|.+.++|++||..||-..+.|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 357887 889999999999999999999999997 6 9999999999999999999999999999999999998754
Q ss_pred C
Q 032131 114 P 114 (147)
Q Consensus 114 ~ 114 (147)
+
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 3
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=2.8e-09 Score=84.45 Aligned_cols=76 Identities=30% Similarity=0.570 Sum_probs=68.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCC---ccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG---KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 36 i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+||.||++.++.+++...|..+|.|..+.|...+... .+.||+||+|.+.++|++|+..|+++.++|+.|.|+++.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999999999999999999999887654332 244999999999999999999999999999999999988
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.97 E-value=2.5e-09 Score=79.02 Aligned_cols=81 Identities=31% Similarity=0.638 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
...|||++||..+++++++++|.+|+.|..+.++.|..+...++|+||.|.+.+++++++. ..-+.|+++.+.|+.+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 4589999999999999999999999999999999999999999999999999999999987 566799999999999887
Q ss_pred CC
Q 032131 113 RP 114 (147)
Q Consensus 113 ~~ 114 (147)
+.
T Consensus 176 k~ 177 (311)
T KOG4205|consen 176 KE 177 (311)
T ss_pred hh
Confidence 64
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.95 E-value=6.6e-09 Score=74.17 Aligned_cols=80 Identities=29% Similarity=0.541 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
...+|+|.|||+.+++++|+++|.+|+.+..+.+-.+ ..+.+.|.|-|.|...++|++|++.|++..++|+++++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3378999999999999999999999997777766555 678899999999999999999999999999999999887764
Q ss_pred C
Q 032131 112 D 112 (147)
Q Consensus 112 ~ 112 (147)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.94 E-value=7.2e-09 Score=73.89 Aligned_cols=86 Identities=22% Similarity=0.422 Sum_probs=78.0
Q ss_pred hCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032131 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 28 ~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
..+.+.+.+||+|+.+.++.++++..|+.+|.+..+.++.++..+.+++|+||+|.+.+..+.++. |++..+.+..+.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 345567899999999999999999999999999999999998888899999999999999999999 9999999999999
Q ss_pred EeecCCC
Q 032131 108 SFANDRP 114 (147)
Q Consensus 108 ~~~~~~~ 114 (147)
.+.....
T Consensus 175 t~~r~~~ 181 (231)
T KOG4209|consen 175 TLKRTNV 181 (231)
T ss_pred eeeeeec
Confidence 8876543
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.92 E-value=1.9e-09 Score=79.65 Aligned_cols=84 Identities=40% Similarity=0.768 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+.+.+||++|+++++++.|++.|.+||.|..+.+++++.++.+++|+||+|++.+...++|.. ....|.++.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 568999999999999999999999999999999999999999999999999999999998883 4578999999999888
Q ss_pred CCCCC
Q 032131 112 DRPPR 116 (147)
Q Consensus 112 ~~~~~ 116 (147)
++...
T Consensus 84 ~r~~~ 88 (311)
T KOG4205|consen 84 SREDQ 88 (311)
T ss_pred Ccccc
Confidence 76543
No 78
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.81 E-value=2.7e-08 Score=76.22 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=69.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
......-|.+.+|||++|+++|++||+.+ .|..+.+.+ .+++..|-|||+|.+.+++++|++ .+...+..+.|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 34455788899999999999999999987 477765554 568899999999999999999999 58888899999998
Q ss_pred eecCCC
Q 032131 109 FANDRP 114 (147)
Q Consensus 109 ~~~~~~ 114 (147)
.+...+
T Consensus 82 ~~~~~e 87 (510)
T KOG4211|consen 82 TAGGAE 87 (510)
T ss_pred ccCCcc
Confidence 876543
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.78 E-value=1.2e-07 Score=66.31 Aligned_cols=85 Identities=19% Similarity=0.349 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEe-cCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC---CeEE
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT-ERESGKSRGFGFVTYDSNESASSAQSAMDGQELN---GRNI 105 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~-~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~---g~~l 105 (147)
+...+++||.+||.++...+|..+|..+-.-+...+.. ++.....+-++|+.|.+.+.|++|+..|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34468999999999999999999999885544443332 2222223469999999999999999999999995 6789
Q ss_pred EEEeecCCC
Q 032131 106 RVSFANDRP 114 (147)
Q Consensus 106 ~v~~~~~~~ 114 (147)
+|+++++-.
T Consensus 111 hiElAKSNt 119 (284)
T KOG1457|consen 111 HIELAKSNT 119 (284)
T ss_pred EeeehhcCc
Confidence 999987643
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.7e-08 Score=70.78 Aligned_cols=72 Identities=28% Similarity=0.652 Sum_probs=65.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 113 (147)
..+||++||+.+.+.+|..||.+||.+..+.+.. +|+||+|.+..+|+.|+..|++..|.+-.+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4689999999999999999999999999887653 48999999999999999999999999888888888754
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.75 E-value=5.3e-08 Score=71.76 Aligned_cols=79 Identities=29% Similarity=0.425 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDIT--------EAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRN 104 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~ 104 (147)
.+.|||.|||.++|.+++.++|.++|.|. .|++.++. .|+.+|=+++.|...++++-|+..|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 35699999999999999999999999663 36777774 4999999999999999999999999999999999
Q ss_pred EEEEeecC
Q 032131 105 IRVSFAND 112 (147)
Q Consensus 105 l~v~~~~~ 112 (147)
|+|+.++-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99998863
No 82
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=3.4e-08 Score=70.71 Aligned_cols=81 Identities=31% Similarity=0.567 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee-C--CeEEEEE
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL-N--GRNIRVS 108 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~-~--g~~l~v~ 108 (147)
+.+++||+-|...-.|++++.+|..||.|.++.+.+. ..+.++|++||.|.+..+|+.||..||+..- - ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 5689999999999999999999999999999988876 5688999999999999999999999998743 2 3568888
Q ss_pred eecCC
Q 032131 109 FANDR 113 (147)
Q Consensus 109 ~~~~~ 113 (147)
++...
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 87654
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.68 E-value=6e-08 Score=74.33 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.....|.+++||+.|++++|.+||+..-.+....++.....+++++.|||.|++.+.+++|+.. |...|..+.|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 3456899999999999999999999876555522233335577999999999999999999994 878898899988765
Q ss_pred c
Q 032131 111 N 111 (147)
Q Consensus 111 ~ 111 (147)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 3
No 84
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.66 E-value=8.4e-08 Score=71.01 Aligned_cols=83 Identities=27% Similarity=0.439 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDIT--------EAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGR 103 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~ 103 (147)
...+|||-+||..+++++|.++|.+++.|. .|.+.+++.|++.++-|.|.|.+...|+.|+.-+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 346899999999999999999999998663 355677889999999999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q 032131 104 NIRVSFANDRP 114 (147)
Q Consensus 104 ~l~v~~~~~~~ 114 (147)
.|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887654
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.64 E-value=3e-08 Score=70.34 Aligned_cols=84 Identities=29% Similarity=0.556 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+..+||.+-|..+++.+.|-..|.+|-.-..-++++++.+++++||+||.|.+.+++..|+..|++..++.++|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34568899999999999999999999997777778899999999999999999999999999999999999999998876
Q ss_pred ecCC
Q 032131 110 ANDR 113 (147)
Q Consensus 110 ~~~~ 113 (147)
..++
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 5544
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=3.8e-08 Score=76.37 Aligned_cols=70 Identities=27% Similarity=0.470 Sum_probs=62.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
...+|+|.|||..+++++|..+|+.||.|..|+.... .++.+||+|.+..+|++|++.|++..+.++.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4578999999999999999999999999998765443 357999999999999999999999999998877
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=1.5e-08 Score=70.41 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
...+|||.|+...++++.|.++|-+.|.|.++.++.++ .++.+ ||||+|.++....-|++.+|+..+.+..+.+++..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34799999999999999999999999999999887764 45566 99999999999999999999999999888887654
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.37 E-value=3.2e-06 Score=63.85 Aligned_cols=76 Identities=20% Similarity=0.424 Sum_probs=67.3
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 33 QTKLFVGGLSW-GTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 33 ~~~i~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
...|.|.||.. .+|.+.|..+|..||.|.+|++..++. .-|+|.+.+...|+-|+..|++..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 36778888864 589999999999999999999988754 369999999999999999999999999999999987
Q ss_pred CC
Q 032131 112 DR 113 (147)
Q Consensus 112 ~~ 113 (147)
..
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=4.5e-07 Score=70.71 Aligned_cols=83 Identities=27% Similarity=0.539 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.+.....|||++||...++.++++++..+|.+....++.+..++-+++|||.+|.+......|++.||+..+.+.+|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34456789999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred eec
Q 032131 109 FAN 111 (147)
Q Consensus 109 ~~~ 111 (147)
.+-
T Consensus 365 ~A~ 367 (500)
T KOG0120|consen 365 RAI 367 (500)
T ss_pred hhh
Confidence 764
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.27 E-value=2.7e-06 Score=53.58 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC-----eeCCeEEEEE
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ-----ELNGRNIRVS 108 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~-----~~~g~~l~v~ 108 (147)
..|.|.+++..++.++|++.|.+++.|..|.+..... .++|.|.+.+.|++|+..+... .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4678888999999999999999999999988876533 7999999999999999977654 4455555544
Q ss_pred e
Q 032131 109 F 109 (147)
Q Consensus 109 ~ 109 (147)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.21 E-value=5.5e-07 Score=69.95 Aligned_cols=82 Identities=26% Similarity=0.449 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.+.+..++|+.-|+..++..+|.+||...|.|..|.++.+..++.++|.+||+|.+.+....||. |.|..+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 34566788888888889999999999999999999999999999999999999999999999997 89999999999887
Q ss_pred eec
Q 032131 109 FAN 111 (147)
Q Consensus 109 ~~~ 111 (147)
...
T Consensus 254 ~sE 256 (549)
T KOG0147|consen 254 LSE 256 (549)
T ss_pred ccH
Confidence 654
No 92
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.21 E-value=3.5e-06 Score=67.50 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCC---CCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERE---SGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
.+..+.+||.||++.++++.|...|..||.|..++++.... ....+-.+||.|-+..++++|++.|++..+..+.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34567899999999999999999999999998888775421 223345799999999999999999999999999999
Q ss_pred EEeec
Q 032131 107 VSFAN 111 (147)
Q Consensus 107 v~~~~ 111 (147)
+-|.+
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98875
No 93
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.20 E-value=4.8e-06 Score=61.87 Aligned_cols=76 Identities=22% Similarity=0.482 Sum_probs=65.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFG--DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+||+||-|.+|+++|.+.+...| .+..+++..+..++.++|||+|..-+..+.++.|+.|...+|.|+.-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 34699999999999999999988766 46667777788899999999999999999999999999999988765554
No 94
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.20 E-value=2.1e-06 Score=63.26 Aligned_cols=83 Identities=31% Similarity=0.589 Sum_probs=73.2
Q ss_pred CCeEE-EcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 33 QTKLF-VGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 33 ~~~i~-v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..+++ +.+++..+++++|+..|...+.|..++++.+..++..+++++++|.+......++.. ....+.++++.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 35566 899999999999999999999999999999999999999999999999999999886 7778888888888887
Q ss_pred CCCCC
Q 032131 112 DRPPR 116 (147)
Q Consensus 112 ~~~~~ 116 (147)
.++..
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 66443
No 95
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=5.3e-05 Score=51.85 Aligned_cols=63 Identities=29% Similarity=0.395 Sum_probs=56.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN 101 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 101 (147)
....|.|++||+..+|++|++...+.|.|.+..+.++ +++.|+|...++++=|+..|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3468999999999999999999999999999988877 48999999999999999999987664
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.15 E-value=4.6e-06 Score=58.52 Aligned_cols=65 Identities=22% Similarity=0.382 Sum_probs=52.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
...++||.||..++++++|+.+|..|-....+++.. ..+. ..||++|.+.+.|..||..|++..+
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g~--~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGGM--PVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCCc--ceEeecHHHHHHHHHHHHHhhccee
Confidence 345899999999999999999999986554444422 2222 4899999999999999999998766
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=3.2e-06 Score=59.43 Aligned_cols=73 Identities=34% Similarity=0.515 Sum_probs=62.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
+....+.+.|.+++..+.+++|.+.|..+|.+...... ..++||+|.+.+++.+|+..|++..+.++.|.+.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 34556789999999999999999999999988444332 2489999999999999999999999999999984
Q ss_pred e
Q 032131 109 F 109 (147)
Q Consensus 109 ~ 109 (147)
.
T Consensus 167 ~ 167 (216)
T KOG0106|consen 167 K 167 (216)
T ss_pred c
Confidence 4
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.06 E-value=3e-05 Score=54.34 Aligned_cols=78 Identities=27% Similarity=0.529 Sum_probs=66.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN-GRNIRV 107 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l~v 107 (147)
...+...+++.|||.+++.+.+..+|.+|.....++++... .+.|||+|.+...+..|...+++..+. ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 34556789999999999999999999999988999887653 369999999999999999999999886 677777
Q ss_pred Eeec
Q 032131 108 SFAN 111 (147)
Q Consensus 108 ~~~~ 111 (147)
..++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 6653
No 99
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.04 E-value=3.3e-05 Score=62.06 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=66.3
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 31 QSQT-KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 31 ~~~~-~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..++ .|-+.|+|+.++-+||.+||..|-.+..-.+++-...++.+|.|.|.|++.++|.+|...|++..|..+.+++.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3445 677889999999999999999997654433444446799999999999999999999999999999998887754
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.03 E-value=3.7e-05 Score=45.97 Aligned_cols=68 Identities=29% Similarity=0.481 Sum_probs=45.7
Q ss_pred CeEEEcCCCCCCCHHHH----HHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 34 TKLFVGGLSWGTDDSSL----KEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l----~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
..++|.|||.+.+...| ++++..+| .|..| . .+.|+|.|.+.+.|++|.+.|++..+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 36899999998877654 55566665 45554 1 1479999999999999999999999999999998
Q ss_pred eec
Q 032131 109 FAN 111 (147)
Q Consensus 109 ~~~ 111 (147)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 864
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.97 E-value=0.00019 Score=54.02 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=56.6
Q ss_pred cCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEeecC
Q 032131 39 GGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG--RNIRVSFAND 112 (147)
Q Consensus 39 ~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~~~~ 112 (147)
-|--+.+|.+.|..++...|.|.+|.+.+.. + --|.|+|++.+.|++|...||+..|+. -.|+|+++++
T Consensus 128 lNp~YpItvDVly~Icnp~GkVlRIvIfkkn--g---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNPQGKVLRIVIFKKN--G---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred ecCccccchhhhhhhcCCCCceEEEEEEecc--c---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 4555678899999999999999999887652 2 359999999999999999999998854 4577777764
No 102
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.95 E-value=1.8e-05 Score=59.53 Aligned_cols=79 Identities=18% Similarity=0.293 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCC-eeE--EEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGD-ITE--AKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~-i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
....|.+++||++.+-++|.+||..|.. |.. |.++.+ ..|...|.|||+|.+.+.|..|+.+.+++....+.|.|-
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3568999999999999999999999864 333 555555 568888999999999999999999999887778888886
Q ss_pred eec
Q 032131 109 FAN 111 (147)
Q Consensus 109 ~~~ 111 (147)
.+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 543
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.82 E-value=8.5e-05 Score=55.20 Aligned_cols=78 Identities=24% Similarity=0.429 Sum_probs=61.1
Q ss_pred CeEEEcCCCCCCCHHH------HHHHhhccCCeeEEEEEecCCC---CccceEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 032131 34 TKLFVGGLSWGTDDSS------LKEAFSNFGDITEAKVITERES---GKSRGFGFVTYDSNESASSAQSAMDGQELNGRN 104 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~------l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~ 104 (147)
.-+||-+||+.+..++ -.++|.+||.|..|.+.+.... ....--.||.|.+.++|.++|+..++..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999998876665 2678999999999977554211 112234599999999999999999999999999
Q ss_pred EEEEeec
Q 032131 105 IRVSFAN 111 (147)
Q Consensus 105 l~v~~~~ 111 (147)
|+..+..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9997643
No 104
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.82 E-value=0.00018 Score=53.48 Aligned_cols=80 Identities=20% Similarity=0.395 Sum_probs=61.5
Q ss_pred CCCCCeEEEcCCCC----CCC-------HHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC
Q 032131 30 SQSQTKLFVGGLSW----GTD-------DSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ 98 (147)
Q Consensus 30 ~~~~~~i~v~nlp~----~~~-------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~ 98 (147)
+...++|.+.|+-. +.+ .++|.+-+.+||.|.+|.+.-.. +.|.+.|.|.+.++|..+|+.|+|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCe
Confidence 34457888888721 223 24556668899999999775332 3589999999999999999999999
Q ss_pred eeCCeEEEEEeecCC
Q 032131 99 ELNGRNIRVSFANDR 113 (147)
Q Consensus 99 ~~~g~~l~v~~~~~~ 113 (147)
.|.|++|..+.....
T Consensus 338 ~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 338 WFDGRQLTASIWDGK 352 (382)
T ss_pred eecceEEEEEEeCCc
Confidence 999999998876543
No 105
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.79 E-value=1.3e-05 Score=57.20 Aligned_cols=72 Identities=19% Similarity=0.365 Sum_probs=59.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC--------C----ccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES--------G----KSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--------~----~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
.-.||+++||+.+....|+++|..||.|-+|.+.....+ + +.-..++|+|.+...|.++...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999877654333 1 2224578999999999999999999999
Q ss_pred CCeE
Q 032131 101 NGRN 104 (147)
Q Consensus 101 ~g~~ 104 (147)
.|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8864
No 106
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.77 E-value=2.2e-05 Score=59.52 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=62.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC--eeCCeEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ--ELNGRNIR 106 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~--~~~g~~l~ 106 (147)
+..+.+.|.++|||++++|+++.+++.+||.|..+.+...++ -||++|.+.++|...+..+... .+.+++|.
T Consensus 24 ~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~y 97 (492)
T KOG1190|consen 24 MAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIY 97 (492)
T ss_pred ccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCccee
Confidence 344678899999999999999999999999999998876543 6999999999988866654443 45677888
Q ss_pred EEeec
Q 032131 107 VSFAN 111 (147)
Q Consensus 107 v~~~~ 111 (147)
|.++.
T Consensus 98 iq~sn 102 (492)
T KOG1190|consen 98 IQYSN 102 (492)
T ss_pred ehhhh
Confidence 87754
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.72 E-value=0.00035 Score=52.64 Aligned_cols=77 Identities=18% Similarity=0.331 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 31 QSQTKLFVGGLSWG-TDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 31 ~~~~~i~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
.+++.++|-+|... ++.+.|-.+|-.||.|++|++++.+. +-|.|++.+..+.++|+..|++..+-|.+|.|+.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 45678888898754 66778999999999999999998654 6899999999999999999999999999999988
Q ss_pred ecC
Q 032131 110 AND 112 (147)
Q Consensus 110 ~~~ 112 (147)
++.
T Consensus 360 SkQ 362 (494)
T KOG1456|consen 360 SKQ 362 (494)
T ss_pred ccc
Confidence 764
No 108
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.69 E-value=4.7e-05 Score=58.01 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=60.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec---CCCCc----------cceEEEEEeCCHHHHHHHHHHh
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITE---RESGK----------SRGFGFVTYDSNESASSAQSAM 95 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~----------~~g~afv~f~~~~~a~~ai~~l 95 (147)
..-+.++|.+.|||.+-..+.|.++|..+|.|..|++... +.+.. .+-.|+|+|.+.+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3346789999999999888999999999999999998765 22211 2457999999999999999988
Q ss_pred cCCeeCCeEEEE
Q 032131 96 DGQELNGRNIRV 107 (147)
Q Consensus 96 ~~~~~~g~~l~v 107 (147)
+....+..-++|
T Consensus 307 ~~e~~wr~glkv 318 (484)
T KOG1855|consen 307 NPEQNWRMGLKV 318 (484)
T ss_pred chhhhhhhcchh
Confidence 655443333333
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=0.00031 Score=55.18 Aligned_cols=62 Identities=16% Similarity=0.368 Sum_probs=49.9
Q ss_pred HHHHhhccCCeeEEEEEecCC---CCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 50 LKEAFSNFGDITEAKVITERE---SGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 50 l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
++.-+.+||.|..|.++++.. ..-..|-.||+|.+.+++++|++.|+|.+|.++.+.+.+..
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 344466889999998887622 22345779999999999999999999999999999888754
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.54 E-value=0.0003 Score=38.67 Aligned_cols=52 Identities=25% Similarity=0.396 Sum_probs=40.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHH
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai 92 (147)
+.|-|.+.+++.. +.+...|.++|.|..+.+... ....+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 4677888887665 455668889999999877632 238999999999999985
No 111
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.54 E-value=0.00085 Score=37.98 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=45.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc---CCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHh
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNF---GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l 95 (147)
..|+|.++. +.+.++|+.+|..| ....+|.|+.|. .|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 578999986 47778999999998 246789999884 5999999999999998754
No 112
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00075 Score=53.35 Aligned_cols=76 Identities=25% Similarity=0.406 Sum_probs=60.1
Q ss_pred CCeEEEcCCCCCCCH------HHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC-CeEE
Q 032131 33 QTKLFVGGLSWGTDD------SSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN-GRNI 105 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~------~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l 105 (147)
...|.|.|+|---.. .-|..+|+++|.+..+.++.+.. ++.+||.|++|.+..+|+.|++.|||..+. .+..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 457889999853221 24567899999999998887755 458999999999999999999999999884 5666
Q ss_pred EEEe
Q 032131 106 RVSF 109 (147)
Q Consensus 106 ~v~~ 109 (147)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6643
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00054 Score=53.46 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=60.7
Q ss_pred hCCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHH
Q 032131 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFS-NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94 (147)
Q Consensus 28 ~~~~~~~~i~v~nlp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 94 (147)
..-++.+||||++||.-++-++|-.+|. -||.|..+-+-.|++-..++|-+=|.|.+.++-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3456778999999999999999999998 699999999988888888999999999999999999984
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.31 E-value=0.0025 Score=42.21 Aligned_cols=77 Identities=23% Similarity=0.416 Sum_probs=50.9
Q ss_pred hCCCCCCeEEEcCCC----C--CCCH---HHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC
Q 032131 28 FMSQSQTKLFVGGLS----W--GTDD---SSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ 98 (147)
Q Consensus 28 ~~~~~~~~i~v~nlp----~--~~~~---~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~ 98 (147)
.+-++..+|.|.=+. . ...+ .+|.+.|.+||.+.=+++..+ --+|+|.+-+.|.+|+. +++.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~ 92 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGI 92 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCS
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCc
Confidence 344455677665333 1 1222 256777889998877777654 47999999999999999 8999
Q ss_pred eeCCeEEEEEeecCC
Q 032131 99 ELNGRNIRVSFANDR 113 (147)
Q Consensus 99 ~~~g~~l~v~~~~~~ 113 (147)
+++|+.|+|++.++-
T Consensus 93 ~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 93 QVNGRTLKIRLKTPD 107 (146)
T ss_dssp EETTEEEEEEE----
T ss_pred EECCEEEEEEeCCcc
Confidence 999999999886654
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.17 E-value=0.0019 Score=48.95 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=56.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccC----CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 35 KLFVGGLSWGTDDSSLKEAFSNFG----DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 35 ~i~v~nlp~~~~~~~l~~~f~~~g----~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.|.+++||+++++.++.+||..-. ..+.|.+++. .+++..|-|||.|..+++|+.|+.+ |...+.-+.|.+..+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 466789999999999999997432 3345545544 5688899999999999999999995 766666666665443
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.12 E-value=0.004 Score=38.80 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=49.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEE-EEecC------CCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeE-E
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAK-VITER------ESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRN-I 105 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~-~~~~~------~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~-l 105 (147)
..|.|-+.|+. ....+.+.|++||.|.+.. +..+. ..........|.|.+..+|++||. .|+..+.|.. +
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 56778888877 5577889999999986653 00000 000112378999999999999999 5999998754 4
Q ss_pred EEEeec
Q 032131 106 RVSFAN 111 (147)
Q Consensus 106 ~v~~~~ 111 (147)
-|.+.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 576663
No 117
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.09 E-value=0.004 Score=37.30 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=42.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhc
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD 96 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 96 (147)
++..||--..|.++...||.++|..||.| .|.++.+. .|||.....+.+..++..+.
T Consensus 7 ~RdHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 33455544599999999999999999976 56677663 79999999999999988776
No 118
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.92 E-value=0.00081 Score=54.42 Aligned_cols=79 Identities=18% Similarity=0.090 Sum_probs=63.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITE-AKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
+...+..|||..||..+++.++.++|.....|+. |.+... .+++.++.|||+|...+++..|...-+...+.-+.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 4456788999999999999999999998777766 555443 56788899999999988888888766666677777887
Q ss_pred E
Q 032131 108 S 108 (147)
Q Consensus 108 ~ 108 (147)
.
T Consensus 509 ~ 509 (944)
T KOG4307|consen 509 D 509 (944)
T ss_pred e
Confidence 5
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.008 Score=47.15 Aligned_cols=65 Identities=26% Similarity=0.592 Sum_probs=49.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC---Cccce---EEEEEeCCHHHHHHHHHHhc
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES---GKSRG---FGFVTYDSNESASSAQSAMD 96 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g---~afv~f~~~~~a~~ai~~l~ 96 (147)
.-.+.|||++||++++|+.|...|..||.+ .|.++..... .-++| |+|+.|+++..+..-|....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 345789999999999999999999999964 4556532111 12456 99999999888888776544
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.76 E-value=0.0015 Score=53.83 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
...++|+|+|+..|.+.++.++...|.+..+.++.. ..++++|.++|.|.+..++.++....+...+....+.|..+++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 357899999999999999999999999988877665 4689999999999999999999888887777777777777665
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.75 E-value=0.0081 Score=44.14 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=49.7
Q ss_pred HHHHHHhhccCCeeEEEEEecCCCCcc-ceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 48 SSLKEAFSNFGDITEAKVITERESGKS-RGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 48 ~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.++++-+++||.|..|.+..++..... ..-.||+|...++|.+|+-.||+..|.|+.+..++.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 467888999999998876655332222 234799999999999999999999999998876654
No 122
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.55 E-value=0.0015 Score=46.92 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=43.4
Q ss_pred ccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 56 NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 56 ~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
+||.|+.+.+..+ --....|=++|.|...++|++|++.||+.-+.|++|.+.+.
T Consensus 92 kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 92 KYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred Hhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 7898888755432 12233567999999999999999999999999999988764
No 123
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.55 E-value=0.032 Score=45.79 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHhhccCCe-----eEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 42 SWGTDDSSLKEAFSNFGDI-----TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 42 p~~~~~~~l~~~f~~~g~i-----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
...++..+|..++..-+.| -.|.+.. .|.||+.. ...+...+..|.+..+.++.|.|+.++.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceEEEECCC
Confidence 3457778888877665544 3344433 28899987 4668889999999999999999998753
No 124
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.16 E-value=0.072 Score=33.80 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCeEEEcCCCCCC-CHHHHHHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 032131 33 QTKLFVGGLSWGT-DDSSLKEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG 102 (147)
Q Consensus 33 ~~~i~v~nlp~~~-~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 102 (147)
...+.+-.+|+.+ +.++|..+...+- .|..++++++.. .++-.+++.|.+.+.|......+||+.++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3455555555554 4455555555443 577788888643 356789999999999999999999998854
No 125
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.11 E-value=0.014 Score=46.15 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=51.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC----CeEEEE
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFS-NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN----GRNIRV 107 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~----g~~l~v 107 (147)
.+++.|.|+|...|..-|....+ ..+.-.++.++.|-.+.++.|||||.|.+.+++..+.++.|++.+. .+.+.+
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 34455555554433332222221 2345566777777677788899999999999999999999999763 344566
Q ss_pred Eeec
Q 032131 108 SFAN 111 (147)
Q Consensus 108 ~~~~ 111 (147)
.|++
T Consensus 468 tYAr 471 (549)
T KOG4660|consen 468 TYAR 471 (549)
T ss_pred ehhh
Confidence 6654
No 126
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.07 E-value=0.0067 Score=48.45 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=57.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee---CCeEEEE
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNF-GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL---NGRNIRV 107 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~---~g~~l~v 107 (147)
..+.|+|.||-.-.|.-+|+.++... |.|... |+-. .+..|||.|.+.++|.+...+||+..| +.+.|-+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 45689999998889999999999864 455544 4432 234799999999999999999999988 4566666
Q ss_pred Eeec
Q 032131 108 SFAN 111 (147)
Q Consensus 108 ~~~~ 111 (147)
.+..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 6643
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.05 E-value=0.00034 Score=57.45 Aligned_cols=65 Identities=28% Similarity=0.394 Sum_probs=56.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ 98 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~ 98 (147)
.++|++||++.+.+.+|...|..++.+..+++......+..+|+||++|...+.+.+|+......
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh
Confidence 46899999999999999999999998888777655677889999999999999999999955543
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.89 E-value=0.014 Score=48.71 Aligned_cols=75 Identities=31% Similarity=0.494 Sum_probs=64.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEE
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG--RNIRVS 108 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v~ 108 (147)
...+.+++.+|+..+....+...|..||.|..|.+-+.. .||++.|.+...++.|+..|-+..|.+ +.+.|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 345789999999999999999999999999988775543 499999999999999999999999965 567777
Q ss_pred eec
Q 032131 109 FAN 111 (147)
Q Consensus 109 ~~~ 111 (147)
++.
T Consensus 527 la~ 529 (975)
T KOG0112|consen 527 LAS 529 (975)
T ss_pred ccc
Confidence 765
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.84 E-value=0.0085 Score=46.14 Aligned_cols=75 Identities=24% Similarity=0.413 Sum_probs=57.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC-eeCCeEEEEEeecC
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ-ELNGRNIRVSFAND 112 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~-~~~g~~l~v~~~~~ 112 (147)
..+|++||.+..+..++..+|.....-..-.++.. .+|+||+..+..-+.+|++.+++. ++.|.++.+...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 36899999999999999999987532111112221 369999999999999999999877 67888888887765
Q ss_pred CC
Q 032131 113 RP 114 (147)
Q Consensus 113 ~~ 114 (147)
+.
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 44
No 130
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.76 E-value=0.029 Score=44.71 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=52.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC--eeCCeEEE
Q 032131 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFG--DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ--ELNGRNIR 106 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~--~~~g~~l~ 106 (147)
..++.|.|+-||..+..++++.+|..-. .+..|.+-.+. -.||+|++.++|+.|.+.|... +|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4567788899999999999999998632 45566665553 3799999999999998876532 56666653
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.71 E-value=0.024 Score=40.92 Aligned_cols=62 Identities=27% Similarity=0.440 Sum_probs=54.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhc
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD 96 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 96 (147)
..|||.||+.-++.+.+.+.|+.|+.|..-.++.| ..++..+-.+|+|...-.+.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 67999999999999999999999999988666665 457788899999999999999999764
No 132
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.63 E-value=0.021 Score=43.55 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=57.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC---CccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES---GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..|-|.||.+.++.++++.+|.-.|.|..+.|+..... ....-.|||.|.+.+.+..| ++|.++.+-+.-|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEe
Confidence 37889999999999999999999999999887653221 22345899999998887766 45788887776655543
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.62 E-value=0.019 Score=39.54 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=48.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc-cCCe---eEEEEEec--CCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC---
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSN-FGDI---TEAKVITE--RESGKSRGFGFVTYDSNESASSAQSAMDGQELNG--- 102 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~-~g~i---~~~~~~~~--~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--- 102 (147)
....|.|++||+.++++++.+.+.. ++.- ..+.-... ........-|||.|.+.+++...+..+++..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999998886555 3322 33331121 1111223579999999999999999999987743
Q ss_pred --eEEEEEeec
Q 032131 103 --RNIRVSFAN 111 (147)
Q Consensus 103 --~~l~v~~~~ 111 (147)
....|+++-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 334555553
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.49 E-value=0.1 Score=30.47 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHhhccCC-----eeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 43 WGTDDSSLKEAFSNFGD-----ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 43 ~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
..++..+|..++...+. |-.|.+... |+||+... +.++.++..|++..+.|+++.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45677888888877643 445555433 89998875 5888999999999999999999864
No 135
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.44 E-value=0.024 Score=42.65 Aligned_cols=6 Identities=50% Similarity=1.370 Sum_probs=2.8
Q ss_pred CCCCCC
Q 032131 142 GGDDGF 147 (147)
Q Consensus 142 ~~~~g~ 147 (147)
|||+||
T Consensus 455 ggrg~y 460 (465)
T KOG3973|consen 455 GGRGGY 460 (465)
T ss_pred CCCccc
Confidence 344444
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.22 E-value=0.0066 Score=45.22 Aligned_cols=78 Identities=24% Similarity=0.410 Sum_probs=57.7
Q ss_pred CeEEEcCCCCCCCHHHH---HHHhhccCCeeEEEEEecCC---CCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032131 34 TKLFVGGLSWGTDDSSL---KEAFSNFGDITEAKVITERE---SGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l---~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
.-+||-+|+.....+.+ .+.|.+||.|..|.+..+.. .......++|+|...++|..+|...++..+.++.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45778888877655544 34688999999987766541 1123345999999999999999999999888887666
Q ss_pred Eeec
Q 032131 108 SFAN 111 (147)
Q Consensus 108 ~~~~ 111 (147)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 5543
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.64 E-value=0.19 Score=39.23 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG 102 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 102 (147)
...|.|-.+|..++..||..|+..+- .|..++++++... ++-..++.|.+.++|......+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999988754 5888999986432 34579999999999999999999998864
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.57 E-value=0.43 Score=31.70 Aligned_cols=72 Identities=22% Similarity=0.247 Sum_probs=50.2
Q ss_pred CCeEEEcCCCCCC----CHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032131 33 QTKLFVGGLSWGT----DDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 33 ~~~i~v~nlp~~~----~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
-.+|.|+=|..++ +...+...++.||.|.+|.+.=. ..|.|.|.+..+|=+|+.+++. ...|..+.+.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 3567776444433 22344555778999999865422 3699999999999999998885 5667777777
Q ss_pred eecC
Q 032131 109 FAND 112 (147)
Q Consensus 109 ~~~~ 112 (147)
|-..
T Consensus 158 Wqqr 161 (166)
T PF15023_consen 158 WQQR 161 (166)
T ss_pred cccc
Confidence 7554
No 139
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.06 E-value=0.05 Score=45.38 Aligned_cols=74 Identities=30% Similarity=0.391 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee--CCeEEEEEeec
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL--NGRNIRVSFAN 111 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~--~g~~l~v~~~~ 111 (147)
.+.++.|.+-..+...|..+|.+||.+......++-. .|.|+|.+.+.|..|+++|+|+.+ -|-+.+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3445556666778888999999999999987767643 799999999999999999999976 46678888877
Q ss_pred CC
Q 032131 112 DR 113 (147)
Q Consensus 112 ~~ 113 (147)
.-
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 53
No 140
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.85 E-value=0.043 Score=42.88 Aligned_cols=68 Identities=25% Similarity=0.383 Sum_probs=53.2
Q ss_pred EcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 38 VGGLSWG-TDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 38 v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
+.-.|+. -+.++|...|.+||.|..|.+-... ..|.|+|.+..+|-.|.. .++..|+++.|+|.|-++
T Consensus 377 lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 3333443 3557899999999999998775442 269999999999977766 588999999999999875
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.62 E-value=0.32 Score=36.11 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=49.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeE-EEEEeec
Q 032131 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRN-IRVSFAN 111 (147)
Q Consensus 36 i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~-l~v~~~~ 111 (147)
|.|-+.|+.-. .-|...|.+||.|.+......- -+-+|.|.+..+|++||. .++..|++.. |-|+.+.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 44456665433 5677889999998876554221 278999999999999999 5999887654 4566543
No 142
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.45 E-value=0.068 Score=43.35 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=60.1
Q ss_pred hCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032131 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 28 ~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
.+.++..++||+|+...+..+-++.++..+|.|..+.. . -|+|.+|..+.....|+..++...+++..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr--~-------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR--D-------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh--h-------hhcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 34456689999999999999999999999998766432 2 18999999999999999999988888877766
Q ss_pred Ee
Q 032131 108 SF 109 (147)
Q Consensus 108 ~~ 109 (147)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 54
No 143
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.23 E-value=0.91 Score=26.03 Aligned_cols=55 Identities=13% Similarity=0.275 Sum_probs=42.0
Q ss_pred CCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032131 44 GTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 44 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
.++-++++.-|..|. ...|. .++ + --||.|.+..+|+++....++..+-...+.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DDR-T-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ecC-C-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 357789999999995 44443 332 2 4689999999999999999998887776654
No 144
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.19 E-value=0.019 Score=47.94 Aligned_cols=78 Identities=21% Similarity=0.371 Sum_probs=61.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
...++|++||+..+++.+|...|..+|.|..|.+....-.. ---|+||.|.+.+.+-.|...+.+..|..-.+++.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~-esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKT-ESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCc-ccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 45789999999999999999999999999888775542211 2248999999999999998888888775444444444
No 145
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.13 E-value=0.55 Score=32.61 Aligned_cols=61 Identities=26% Similarity=0.383 Sum_probs=43.1
Q ss_pred CHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEEEeecC
Q 032131 46 DDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD--GQELNGRNIRVSFAND 112 (147)
Q Consensus 46 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--~~~~~g~~l~v~~~~~ 112 (147)
..+.|+++|..++.+..+...+.- .=..|.|.+.+.|.+|...|+ +..+.+..+++.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 447889999999987776555431 247899999999999999999 8999999999987743
No 146
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=89.11 E-value=0.52 Score=35.77 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 032131 140 YRGGDDGF 147 (147)
Q Consensus 140 ~~~~~~g~ 147 (147)
++||++||
T Consensus 377 G~GGGggy 384 (465)
T KOG3973|consen 377 GRGGGGGY 384 (465)
T ss_pred CCCCCCCC
Confidence 33444555
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=88.51 E-value=0.31 Score=36.23 Aligned_cols=76 Identities=22% Similarity=0.187 Sum_probs=57.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
..++.|++++.+.+.+.+...++..+|......+........+++++++.|...+.+..++.......+.+..+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 3567889999888888888888888887766656555556778899999999999999999954433444444333
No 148
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.64 E-value=4.4 Score=30.16 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=35.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCccceEEEEEeCCH
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGD-ITEAKVITERESGKSRGFGFVTYDSN 85 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~ 85 (147)
...|++.|||.++.-.+|+..+.+.+- ..++.| ..+.+-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 456999999999999999999988653 344433 34456899999654
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=83.23 E-value=0.31 Score=37.49 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=51.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN 101 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 101 (147)
+....+++|.+|+..+...++.++|..+|.+....|-. +-...+|.++|........|+. +++..+.
T Consensus 148 eeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 148 EEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 33447899999999999999999999999887665533 2223478899998888888888 5666553
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.80 E-value=0.16 Score=39.41 Aligned_cols=74 Identities=15% Similarity=0.335 Sum_probs=59.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEe-cCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT-ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~-~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+.+-|.|+|+...|+-+..++.+|+.+..+.... +.. .-..-|+|.+.+.+..+|.+|++..+...-+++.+-.
T Consensus 81 rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 81 RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 4578899999999999999999999998875532 222 1245577889999999999999999988888887753
No 151
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=80.12 E-value=3.5 Score=23.82 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=42.8
Q ss_pred HHHHHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 48 SSLKEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 48 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
.+|++.|...| .+.++..+....+..+.-.-+|+.....+... .|+=.+++++.+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46778888888 57788777776666677788888876544443 344457788888777654
No 152
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=77.96 E-value=9.1 Score=24.48 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=30.2
Q ss_pred CeEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeC-CHHHHHHHHH
Q 032131 34 TKLFVGGLSWGT---------DDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYD-SNESASSAQS 93 (147)
Q Consensus 34 ~~i~v~nlp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~-~~~~a~~ai~ 93 (147)
.++.|-|++.+. +.+.|.+.|..|..++ +...... ..++++++|+|. +-.....|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 355666775433 4578999999997764 4444443 367899999997 4555555655
No 153
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.23 E-value=25 Score=28.88 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=56.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEEecC----------CCCc---------------------
Q 032131 30 SQSQTKLFVGGLSWG-TDDSSLKEAFSNF----GDITEAKVITER----------ESGK--------------------- 73 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~-~~~~~l~~~f~~~----g~i~~~~~~~~~----------~~~~--------------------- 73 (147)
...+++|.|.||.|. +...+|..+|..| |.|.+|.|.... -.|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999986 5667887777654 478887764321 0011
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhcCCeeCCe--EEEEEe
Q 032131 74 ----------------SRGFGFVTYDSNESASSAQSAMDGQELNGR--NIRVSF 109 (147)
Q Consensus 74 ----------------~~g~afv~f~~~~~a~~ai~~l~~~~~~g~--~l~v~~ 109 (147)
..-||.|+|.+.+.|..+...++|+.+... .+.+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 136899999999999999999999988543 444443
No 154
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.56 E-value=9.1 Score=29.91 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHH
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGD-ITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 94 (147)
.+.|-|-++|.....+||...|..|+. --.|.|+-+. .+|..|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 456778899999999999999999874 3567787763 799999999999999884
No 155
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=75.55 E-value=6.8 Score=22.50 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=41.3
Q ss_pred HHHHHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 48 SSLKEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 48 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
++|.+-|...| .+.++.-+....+.+..-..||++....+...+ |+=..+.+..++|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCC
Confidence 46777777777 577777777666677777889988866553333 33346777777777654
No 156
>COG4907 Predicted membrane protein [Function unknown]
Probab=75.26 E-value=3 Score=33.07 Aligned_cols=14 Identities=7% Similarity=-0.042 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcCC
Q 032131 85 NESASSAQSAMDGQ 98 (147)
Q Consensus 85 ~~~a~~ai~~l~~~ 98 (147)
.+...+||+.+...
T Consensus 525 ~dkVvkam~~~~~~ 538 (595)
T COG4907 525 SDKVVKAMRKALDM 538 (595)
T ss_pred HHHHHHHHHHhCcH
Confidence 35666666655544
No 157
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=68.38 E-value=31 Score=24.09 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=3.3
Q ss_pred HHHHhhcc
Q 032131 50 LKEAFSNF 57 (147)
Q Consensus 50 l~~~f~~~ 57 (147)
|-++|...
T Consensus 94 VDEIfG~i 101 (215)
T KOG3262|consen 94 VDEIFGPI 101 (215)
T ss_pred hhhhcccc
Confidence 33444443
No 158
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=67.80 E-value=1.1 Score=36.12 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=52.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG 102 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 102 (147)
.+++++.|+++.++-.+|..++..+-.+.++.+..+.......-+.+|.|.-......|+-+|++..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4678999999999999999999988666666554443334455678888987667777777788776644
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=66.58 E-value=20 Score=26.84 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=52.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecC-------CCCccceEEEEEeCCHHHHHHH----HHHhcCC--ee
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITER-------ESGKSRGFGFVTYDSNESASSA----QSAMDGQ--EL 100 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a----i~~l~~~--~~ 100 (147)
+.+.+.|+..+++-..+..-|..||.|+.|.++.+. ...+......+-|-+.+.|... ++.|..+ .+
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L 95 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKL 95 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 567778999888877788888999999999988764 1233446788899888887653 3333322 34
Q ss_pred CCeEEEEEe
Q 032131 101 NGRNIRVSF 109 (147)
Q Consensus 101 ~g~~l~v~~ 109 (147)
....|.+.+
T Consensus 96 ~S~~L~lsF 104 (309)
T PF10567_consen 96 KSESLTLSF 104 (309)
T ss_pred CCcceeEEE
Confidence 445555544
No 160
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=65.50 E-value=35 Score=22.21 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=49.2
Q ss_pred CCCCeEEEcCCCCC---CCHHHHHHHhhccCC-eeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032131 31 QSQTKLFVGGLSWG---TDDSSLKEAFSNFGD-ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 31 ~~~~~i~v~nlp~~---~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
.+...|-|+..... .+...+++.+.+.|. ++.+....+ ...|.|.+.++..+|.+.|...--.+..+.
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VA 104 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIA 104 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEE
Confidence 34456666655333 466788888888773 444433322 588999999999999998885554556677
Q ss_pred EEeec
Q 032131 107 VSFAN 111 (147)
Q Consensus 107 v~~~~ 111 (147)
+..+.
T Consensus 105 lnl~p 109 (127)
T PRK10629 105 QQDDN 109 (127)
T ss_pred EecCC
Confidence 77665
No 161
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=65.38 E-value=3.9 Score=24.87 Aligned_cols=26 Identities=19% Similarity=0.375 Sum_probs=20.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhh
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFS 55 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~ 55 (147)
....++|.|.|||...++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34568899999999999998886544
No 162
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=64.25 E-value=6.9 Score=27.14 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=47.6
Q ss_pred CeEEEcCCCCCCCHH-----HHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCe-EEEE
Q 032131 34 TKLFVGGLSWGTDDS-----SLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGR-NIRV 107 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~-----~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~-~l~v 107 (147)
.++.+.+++.++..+ ....+|.+|.......+.+. ....-|.|.+.+.+..|.-.++...|.+. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 456777777654332 33455666554443333332 23677899999999999999999999887 5655
Q ss_pred Eeec
Q 032131 108 SFAN 111 (147)
Q Consensus 108 ~~~~ 111 (147)
-.+.
T Consensus 85 yfaQ 88 (193)
T KOG4019|consen 85 YFAQ 88 (193)
T ss_pred EEcc
Confidence 5543
No 163
>COG4907 Predicted membrane protein [Function unknown]
Probab=58.80 E-value=12 Score=29.96 Aligned_cols=9 Identities=22% Similarity=0.254 Sum_probs=4.7
Q ss_pred HHHHHHHhc
Q 032131 88 ASSAQSAMD 96 (147)
Q Consensus 88 a~~ai~~l~ 96 (147)
++++++.|.
T Consensus 525 ~dkVvkam~ 533 (595)
T COG4907 525 SDKVVKAMR 533 (595)
T ss_pred HHHHHHHHH
Confidence 445555554
No 164
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=57.94 E-value=39 Score=26.73 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=3.2
Q ss_pred eEEEEEe
Q 032131 76 GFGFVTY 82 (147)
Q Consensus 76 g~afv~f 82 (147)
|.+++.+
T Consensus 343 G~ai~l~ 349 (456)
T PRK10590 343 GEALSLV 349 (456)
T ss_pred eeEEEEe
Confidence 4555433
No 165
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=55.84 E-value=26 Score=24.34 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=31.6
Q ss_pred CHHHHHHHhhcc-CCeeEEEEEecCC-CCccceEEEEEeCCHHHHHHHHHH
Q 032131 46 DDSSLKEAFSNF-GDITEAKVITERE-SGKSRGFGFVTYDSNESASSAQSA 94 (147)
Q Consensus 46 ~~~~l~~~f~~~-g~i~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~ 94 (147)
+++.|.++.... +.+.++.+..... .-..+|-.||+|.+.+.+.+.++.
T Consensus 119 td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 119 TDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 444444443322 5777776654321 126779999999999999987763
No 166
>PRK11901 hypothetical protein; Reviewed
Probab=51.91 E-value=83 Score=24.04 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=40.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEE--EEeCCHHHHHHHHHHhcC
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGF--VTYDSNESASSAQSAMDG 97 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~af--v~f~~~~~a~~ai~~l~~ 97 (147)
.+....+|-|..+. .++.|..|..+++ +..+.+..-...++. ||.. =.|.+.++|..|+..|..
T Consensus 241 ~p~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 241 APASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 44455566666553 6778888887775 344444433233333 4444 368899999999998874
No 167
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=48.16 E-value=19 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=28.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 032131 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEA 63 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~ 63 (147)
......++|+-|+|..++++.|..+..+.|.+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34455789999999999999999999888754443
No 168
>PRK10905 cell division protein DamX; Validated
Probab=46.99 E-value=1.3e+02 Score=23.02 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=39.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEE--EEEeCCHHHHHHHHHHhcC
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFG--FVTYDSNESASSAQSAMDG 97 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~a--fv~f~~~~~a~~ai~~l~~ 97 (147)
+....+|-|..+. +.+.|..|..+.+. ....+.....+|+. +|. +=.|.+.++|++|+..|..
T Consensus 244 pa~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 244 PSSHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CCCceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 3444566666554 66788888887753 32223332233332 333 3468999999999998873
No 169
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=45.27 E-value=67 Score=19.28 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=37.1
Q ss_pred EcCCCCCCCHHHHHHHhhc-cC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHH
Q 032131 38 VGGLSWGTDDSSLKEAFSN-FG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94 (147)
Q Consensus 38 v~nlp~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 94 (147)
.--++...+-.+|++.++. |+ .|..|....-+. +. -=|+|.+..-+.|......
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~--KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GE--KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cc--EEEEEEeCCCCcHHHHHHh
Confidence 3346788899999999887 44 466666554432 22 2599999988888776543
No 170
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=42.43 E-value=43 Score=25.01 Aligned_cols=33 Identities=33% Similarity=0.370 Sum_probs=23.4
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032131 78 GFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 78 afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
|||.|.+..+|..+++.+....- ..+.++.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCC
Confidence 69999999999999996554432 3345555543
No 171
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=41.37 E-value=75 Score=18.71 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=37.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHH
Q 032131 36 LFVGGLSWGTDDSSLKEAFSN-FG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94 (147)
Q Consensus 36 i~v~nlp~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 94 (147)
-|+-.++...+-.+|++.++. |+ .|..|....-+. + .-=|||.+..-+.|..+...
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHh
Confidence 344457888999999999887 44 466665544321 2 22599999887777765543
No 172
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=41.04 E-value=68 Score=18.12 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=14.7
Q ss_pred HHHHHHhhccCCeeEEEE
Q 032131 48 SSLKEAFSNFGDITEAKV 65 (147)
Q Consensus 48 ~~l~~~f~~~g~i~~~~~ 65 (147)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999998876644
No 173
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=40.99 E-value=14 Score=28.85 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=43.9
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHhhc--cCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHH
Q 032131 34 TKLFVGGLSWGTDD--------SSLKEAFSN--FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92 (147)
Q Consensus 34 ~~i~v~nlp~~~~~--------~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai 92 (147)
+.+|+.+...+... +++..+|.. .+.+..+.+.++.....+.|..|++|...+.+++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 45666666554433 488888888 566777777776556677889999999999999886
No 174
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.53 E-value=53 Score=18.75 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=21.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCeeCC
Q 032131 77 FGFVTYDSNESASSAQSAMDGQELNG 102 (147)
Q Consensus 77 ~afv~f~~~~~a~~ai~~l~~~~~~g 102 (147)
+.++.|.+..+|.++-+.|....+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 68999999999999988888665543
No 175
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=40.43 E-value=38 Score=26.82 Aligned_cols=13 Identities=0% Similarity=-0.020 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHhc
Q 032131 84 SNESASSAQSAMD 96 (147)
Q Consensus 84 ~~~~a~~ai~~l~ 96 (147)
+....+.+...+-
T Consensus 301 ~~~~l~~~Fk~FG 313 (419)
T KOG0116|consen 301 TPAELEEVFKQFG 313 (419)
T ss_pred CHHHHHHHHhhcc
Confidence 4445555555433
No 176
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=36.77 E-value=58 Score=22.80 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=8.9
Q ss_pred HHHHHHhhccCCeeEEEE
Q 032131 48 SSLKEAFSNFGDITEAKV 65 (147)
Q Consensus 48 ~~l~~~f~~~g~i~~~~~ 65 (147)
++|-.+=+-++.|.++.+
T Consensus 89 ~qIGKVDEIfG~i~d~~f 106 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVHF 106 (215)
T ss_pred hhhcchhhhcccccccEE
Confidence 344444455566655433
No 177
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=36.09 E-value=69 Score=22.24 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=31.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec
Q 032131 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITE 68 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~ 68 (147)
......+++.+++..++...+...|..++.+....+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 345578899999999999999999999998866655544
No 178
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=35.69 E-value=64 Score=25.09 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=42.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCc--cceEEEEEeCCHHHHHHHHHHhcCCee
Q 032131 34 TKLFVGGLSWGTDDSSLKEAFSNFGD-ITEAKVITERESGK--SRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
..|.|.+||+..+..++.+.+..+-. +....+......-. ....++|.|...++.......+++..+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 46778899999999888777665321 11111221111111 136789999999998777777777655
No 179
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=32.51 E-value=82 Score=23.23 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=24.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEE
Q 032131 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVI 66 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~ 66 (147)
.....|+|||++++..-+..++...-.+....++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 3466689999999999998888875444333333
No 180
>PHA01632 hypothetical protein
Probab=31.54 E-value=57 Score=17.98 Aligned_cols=21 Identities=5% Similarity=0.302 Sum_probs=16.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc
Q 032131 36 LFVGGLSWGTDDSSLKEAFSN 56 (147)
Q Consensus 36 i~v~nlp~~~~~~~l~~~f~~ 56 (147)
|.|..+|...++++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445689999999999887653
No 181
>PRK02302 hypothetical protein; Provisional
Probab=30.10 E-value=1.3e+02 Score=18.28 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=27.0
Q ss_pred HhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032131 53 AFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 53 ~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
.+.+||.|..+.=.. .|+. -|.+.++++..++.|....+
T Consensus 22 ~LrkfG~I~Y~Skk~--------kYvv-lYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 22 KLSKYGDIVYHSKRS--------RYLV-LYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHhhcCcEEEEeccc--------cEEE-EEECHHHHHHHHHHHhcCCC
Confidence 467899987652111 1444 47889999999998887655
No 182
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=29.60 E-value=2.1e+02 Score=20.25 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCHHHHHHH---hhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC
Q 032131 45 TDDSSLKEA---FSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN 101 (147)
Q Consensus 45 ~~~~~l~~~---f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 101 (147)
+++.+|+.| +..|| |.++ +..|..++......|+.=.+.+.+.+|+..+....+.
T Consensus 39 i~~~~lk~F~k~AkKyG-V~ya-v~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~ 96 (204)
T PF12687_consen 39 ITDEDLKEFKKEAKKYG-VDYA-VKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLK 96 (204)
T ss_pred cCHhhHHHHHHHHHHcC-CceE-EeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhh
Confidence 355556555 56776 5555 4555555444445666667888888898887765543
No 183
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=29.12 E-value=72 Score=23.91 Aligned_cols=68 Identities=26% Similarity=0.548 Sum_probs=42.0
Q ss_pred CCeEEEcCCCCCC------------CHHHHHHHhhccCCeeEEEEEe-c----CCCCcc-----ceEEE---------EE
Q 032131 33 QTKLFVGGLSWGT------------DDSSLKEAFSNFGDITEAKVIT-E----RESGKS-----RGFGF---------VT 81 (147)
Q Consensus 33 ~~~i~v~nlp~~~------------~~~~l~~~f~~~g~i~~~~~~~-~----~~~~~~-----~g~af---------v~ 81 (147)
..+|++.+||-.| ++..|...|+.||.|..|.++. + .-+++. ++|+| |.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 4578888887433 5567899999999988876542 1 123333 33332 44
Q ss_pred eCCHHHHHHHHHHhcCCee
Q 032131 82 YDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 82 f~~~~~a~~ai~~l~~~~~ 100 (147)
|-..-....||..|.+..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 4444455667777776644
No 184
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=29.01 E-value=1.4e+02 Score=22.16 Aligned_cols=9 Identities=33% Similarity=0.298 Sum_probs=3.8
Q ss_pred CCCCCCCHH
Q 032131 40 GLSWGTDDS 48 (147)
Q Consensus 40 nlp~~~~~~ 48 (147)
+|...+++.
T Consensus 119 GLEg~ltD~ 127 (271)
T COG1512 119 GLEGVLTDA 127 (271)
T ss_pred CcccccChH
Confidence 344444443
No 185
>PRK02886 hypothetical protein; Provisional
Probab=28.71 E-value=1.4e+02 Score=18.10 Aligned_cols=39 Identities=10% Similarity=0.226 Sum_probs=27.1
Q ss_pred HhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032131 53 AFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 53 ~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
.+..||.|..+.=.. .|+. -|.+.++++..++.|....+
T Consensus 20 ~LrkyG~I~Y~Skr~--------kYvv-lYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYVSKRL--------KYAV-LYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEEeccc--------cEEE-EEECHHHHHHHHHHHhcCCC
Confidence 467899987652211 1444 47789999999998887655
No 186
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=28.66 E-value=66 Score=25.95 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=4.1
Q ss_pred eEEEEEeCC
Q 032131 76 GFGFVTYDS 84 (147)
Q Consensus 76 g~afv~f~~ 84 (147)
.+.+.+|.+
T Consensus 62 ~~sLaeF~~ 70 (492)
T PF06273_consen 62 KMSLAEFAS 70 (492)
T ss_pred cccHHHhhc
Confidence 344444443
No 187
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=26.95 E-value=1.4e+02 Score=17.35 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=26.9
Q ss_pred HhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032131 53 AFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 53 ~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
-+..||.|..+.= . . .|+.+ |.+.++++..++.|....+
T Consensus 16 ~L~kfG~i~Y~Sk--k-----~-kYvvl-Yvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSK--K-----M-KYVVL-YVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEEC--C-----c-cEEEE-EECHHHHHHHHHHHhcCCC
Confidence 4678998876521 1 1 14444 7789999999998887655
No 188
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=26.13 E-value=1.2e+02 Score=21.11 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=4.6
Q ss_pred HHHHHHHHhc
Q 032131 87 SASSAQSAMD 96 (147)
Q Consensus 87 ~a~~ai~~l~ 96 (147)
.|+.+.+.|.
T Consensus 63 ~Ae~va~~L~ 72 (186)
T PRK07772 63 AAENVAESLT 72 (186)
T ss_pred HHHHHHHhcC
Confidence 4555544433
No 189
>PF14893 PNMA: PNMA
Probab=26.10 E-value=56 Score=25.01 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc
Q 032131 32 SQTKLFVGGLSWGTDDSSLKEAFSN 56 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~ 56 (147)
..+.+.|.+||.++.+.+|++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3467889999999999999988764
No 190
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=25.73 E-value=89 Score=26.14 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 032131 85 NESASSAQS 93 (147)
Q Consensus 85 ~~~a~~ai~ 93 (147)
+-....+|.
T Consensus 501 ~~~~~~~i~ 509 (629)
T PRK11634 501 VRHIVGAIA 509 (629)
T ss_pred HHHHHHHHH
Confidence 333444444
No 191
>PF12287 Caprin-1_C: Cytoplasmic activation/proliferation-associated protein-1 C term; InterPro: IPR022070 This family of proteins is found in eukaryotes. Proteins in this family are typically between 343 and 708 amino acids in length. This family is the C-terminal region of caprin-1. Caprin-1 is a protein involved in regulating cellular proliferation. In mutated phenotypes, the G1 phase of the cell cycle is greatly lengthened, impairing normal proliferation. The C-terminal region of caprin-1 contains RGG motifs which are characteristic of RNA binding domains. It is possible that caprin-1 functions through an RNA binding mechanism.
Probab=23.84 E-value=91 Score=23.59 Aligned_cols=6 Identities=33% Similarity=1.071 Sum_probs=2.3
Q ss_pred CCCCCC
Q 032131 135 GYRVNY 140 (147)
Q Consensus 135 ~~~~~~ 140 (147)
||++||
T Consensus 262 GykgGf 267 (316)
T PF12287_consen 262 GYKGGF 267 (316)
T ss_pred CccCCc
Confidence 344333
No 192
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=23.36 E-value=1.1e+02 Score=19.00 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=16.9
Q ss_pred eEEEEEeCCHHHHHHHHHHh
Q 032131 76 GFGFVTYDSNESASSAQSAM 95 (147)
Q Consensus 76 g~afv~f~~~~~a~~ai~~l 95 (147)
-|++++|.+.+...++..++
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 58899999999999887753
No 193
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=22.93 E-value=2.1e+02 Score=18.59 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032131 48 SSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 48 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
.+|+..|- |..+.++.|+... ....+-+..+.+.. ...++..|.+..+.++++.|..-.
T Consensus 3 ~~lkAa~l-~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 3 YQLKAAYL-YNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHH-HHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 44444432 2234455565442 11224454454444 556778888889999999887643
No 194
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=21.96 E-value=1.4e+02 Score=18.21 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=19.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCC
Q 032131 75 RGFGFVTYDSNESASSAQSAMDGQ 98 (147)
Q Consensus 75 ~g~afv~f~~~~~a~~ai~~l~~~ 98 (147)
+.+|.|+|.+.+.+..|...|...
T Consensus 51 ~pm~vv~f~~~~~g~~~yq~Lrel 74 (91)
T PF12829_consen 51 RPMCVVNFPNYEVGVSAYQKLREL 74 (91)
T ss_pred eEeEEEECCChHHHHHHHHHHHHH
Confidence 358999999999999998876643
No 195
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=21.74 E-value=1.1e+02 Score=22.81 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=18.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 032131 35 KLFVGGLSWGTDDSSLKEAFSN 56 (147)
Q Consensus 35 ~i~v~nlp~~~~~~~l~~~f~~ 56 (147)
.+.|.|+|+.++...+..++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4778999999999888888864
No 196
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.96 E-value=1.1e+02 Score=14.99 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=13.8
Q ss_pred CCCHHHHHHHhhccCCe
Q 032131 44 GTDDSSLKEAFSNFGDI 60 (147)
Q Consensus 44 ~~~~~~l~~~f~~~g~i 60 (147)
.++.++|++.+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 46789999999998854
Done!