BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032132
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WSC|A Chain A, Crystal Structure Of St0229, Function Unknown Protein From
Sulfolobus Tokodaii
pdb|1WSC|B Chain B, Crystal Structure Of St0229, Function Unknown Protein From
Sulfolobus Tokodaii
Length = 230
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 47 GGEPRLRGCIGTLEARC-LINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET 105
G LRGCIG +EA L A+ +A D RFPP+ E ++ V++LT +
Sbjct: 66 GNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQE 125
Query: 106 ANNYLDWE------VGTHGLIIEFTDPEYSTRRSATYLPEV 140
+ WE VG GLI+ EY S LP+V
Sbjct: 126 IDVENRWELPKKIKVGEDGLIV-----EYGILYSGLLLPQV 161
>pdb|1ZQ7|A Chain A, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|B Chain B, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|C Chain C, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|D Chain D, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9
Length = 207
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
Query: 28 PAFDEGQHPLFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPIQ 86
P F+E + +FVT + GG LRGCIG L D A+++A +D RFP ++
Sbjct: 39 PVFEEYRG-VFVT---LTEGG--LLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVE 92
Query: 87 ARELPSLECTVSILTDFETANNYL-----DWEVGTHGLIIE 122
E ++ V+ILT E N E+G HGLI++
Sbjct: 93 QDEXKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVK 133
>pdb|1VAJ|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0010 From
Pyrococcus Horikoshii
Length = 214
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 23 EDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRR 81
+D PP ++ + +FVT + + LRGCIG L+ A+ SA+ D R
Sbjct: 35 KDTPPELWE--KXGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPR 92
Query: 82 FPPIQARELPSLECTVSILTDFETANNYLD-----WEVGTHGLIIE 122
FPP++ E +L VS+LT E + +VG GLI+E
Sbjct: 93 FPPVKLEEXDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVE 138
>pdb|2ZFW|A Chain A, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|B Chain B, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|D Chain D, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|E Chain E, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
Length = 148
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 30 FDEGQHPLFVTWKKVVNGGEPRLRGCIGTL---EARCLINGFKDYALTSALKDRRFPPIQ 86
F E + + WKKV G PR + +R L ++ Y +SA DR+ P++
Sbjct: 87 FLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERYLSSSAATDRQLIPVE 146
Query: 87 AR 88
AR
Sbjct: 147 AR 148
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 24 DAPPPAFD-EGQH-PLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
+ PPA D +G+H + ++K+V GG P LR C +L R L+
Sbjct: 404 NGKPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQCT-SLTVRGLV 446
>pdb|2E1N|A Chain A, Crystal Structure Of The Cyanobacterium Circadian Clock
Modifier Pex
pdb|2E1N|B Chain B, Crystal Structure Of The Cyanobacterium Circadian Clock
Modifier Pex
Length = 138
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 30 FDEGQHPLFVTWKKVVNGGEPRLRGCIGTL---EARCLINGFKDYALTSALKDRRFPPIQ 86
F E + + WKKV G PR + +R L ++ Y +SA DR+ P++
Sbjct: 77 FLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERYLSSSAATDRQLIPVE 136
Query: 87 AR 88
AR
Sbjct: 137 AR 138
>pdb|1XRI|A Chain A, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|1XRI|B Chain B, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|2Q47|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
pdb|2Q47|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
Length = 151
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 30 FDEGQHPLFVTWKKVVNGGEPR---LRGCIGTLEARCLINGFKDYALTSALK----DRRF 82
DE HP+ + K+ G+ R L GC+ L+ CL + F +Y +A K D+RF
Sbjct: 88 LDEKNHPVLIHCKR----GKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAAKARVSDQRF 143
Query: 83 PPI 85
I
Sbjct: 144 XEI 146
>pdb|3OH0|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Triphosphate
pdb|3OH1|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galacturonic Acid
pdb|3OH2|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galactose
pdb|3OH3|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate -Arabinose
pdb|3OH4|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate Glucose
Length = 641
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 107 NNYLDWEVGTHGLIIEFTDPEYS--TRRS 133
++Y+D +HG++ EF +P+YS TRRS
Sbjct: 367 SSYVDRLRESHGIVPEFINPKYSDETRRS 395
>pdb|3OGZ|A Chain A, Protein Structure Of Usp From L. Major In Apo-Form
Length = 630
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 107 NNYLDWEVGTHGLIIEFTDPEYS--TRRS 133
++Y+D +HG++ EF +P+YS TRRS
Sbjct: 367 SSYVDRLRESHGIVPEFINPKYSDETRRS 395
>pdb|3F1W|A Chain A, Crystal Structure Of A Mutant Proliferating Cell Nuclear
Antigen That Blocks Translesion Synthesis
Length = 258
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 71 YALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIE-FTDPEY 128
Y T +L F I R+L L +++I+ ET D ++G+ +II+ F D E+
Sbjct: 133 YDSTLSLPSSEFSKI-VRDLSQLSDSINIMITKETIKFVADGDIGSSSVIIKPFVDMEH 190
>pdb|3GPM|A Chain A, Structure Of The Trimeric Form Of The E113g Pcna Mutant
Protein
pdb|3GPN|A Chain A, Structure Of The Non-Trimeric Form Of The E113g Pcna
Mutant Protein
Length = 258
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 71 YALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIE-FTDPEY 128
Y T +L F I R+L L +++I+ ET D ++G+ +II+ F D E+
Sbjct: 133 YDSTLSLPSSEFSKI-VRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEH 190
>pdb|3V60|B Chain B, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|B Chain B, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V62|B Chain B, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
pdb|3V62|E Chain E, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
Length = 258
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 71 YALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIE-FTDPEY 128
Y T +L F I R+L L +++I+ ET D ++G+ +II+ F D E+
Sbjct: 133 YDSTLSLPSSEFSKI-VRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEH 190
>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
Length = 274
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 77 LKDRRFPPIQARELPSLEC 95
+KD R+ I RELPS EC
Sbjct: 159 IKDPRYKHIPKRELPSTEC 177
>pdb|2OD8|A Chain A, Structure Of A Peptide Derived From Cdc9 Bound To Pcna
pdb|1PLQ|A Chain A, Crystal Structure Of The Eukaryotic Dna Polymerase
Processivity Factor Pcna
pdb|1PLR|A Chain A, Crystal Structure Of The Eukaryotic Dna Polymerase
Processivity Factor Pcna
Length = 258
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 71 YALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIE-FTDPEY 128
Y T +L F I R+L L +++I+ ET D ++G+ +II+ F D E+
Sbjct: 133 YDSTLSLPSSEFSKI-VRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEH 190
>pdb|4APW|A Chain A, Alp12 Filament Structure
pdb|4APW|B Chain B, Alp12 Filament Structure
pdb|4APW|C Chain C, Alp12 Filament Structure
pdb|4APW|D Chain D, Alp12 Filament Structure
pdb|4APW|E Chain E, Alp12 Filament Structure
pdb|4APW|F Chain F, Alp12 Filament Structure
pdb|4APW|G Chain G, Alp12 Filament Structure
pdb|4APW|H Chain H, Alp12 Filament Structure
pdb|4APW|I Chain I, Alp12 Filament Structure
pdb|4APW|J Chain J, Alp12 Filament Structure
pdb|4APW|K Chain K, Alp12 Filament Structure
pdb|4APW|L Chain L, Alp12 Filament Structure
pdb|4APW|M Chain M, Alp12 Filament Structure
pdb|4APW|N Chain N, Alp12 Filament Structure
pdb|4APW|O Chain O, Alp12 Filament Structure
pdb|4APW|P Chain P, Alp12 Filament Structure
Length = 329
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 72 ALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYS 129
A+T L + +Q L C +S+L + + Y D+ G + ++ D EYS
Sbjct: 93 AITQVLDSNKNNKVQL----VLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYS 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,762,871
Number of Sequences: 62578
Number of extensions: 189070
Number of successful extensions: 345
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 19
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)