Query 032132
Match_columns 146
No_of_seqs 146 out of 636
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zq7_A Hypothetical protein MM 100.0 1.7E-50 5.7E-55 322.3 12.0 132 4-146 6-151 (207)
2 1vaj_A Hypothetical protein PH 100.0 3.7E-50 1.3E-54 321.7 12.7 136 5-146 10-156 (214)
3 1wsc_A Hypothetical protein ST 100.0 8.5E-49 2.9E-53 316.6 8.2 136 4-146 16-167 (230)
4 1eaq_A RUNT-related transcript 66.0 6 0.0002 29.0 3.6 76 32-119 51-128 (140)
5 2fho_A Spliceosomal protein SF 25.0 11 0.00037 22.9 -0.7 15 79-93 16-30 (47)
6 3evs_C Bone morphogenetic prot 18.1 69 0.0024 22.4 2.3 25 34-58 43-67 (119)
7 2l9x_A Uncharacterized protein 17.8 18 0.0006 19.5 -0.7 9 52-60 6-14 (30)
8 1iio_A Conserved hypothetical 17.1 1.1E+02 0.0039 20.4 3.0 28 57-86 1-28 (84)
9 3fv5_A DNA topoisomerase 4 sub 16.3 74 0.0025 23.9 2.2 24 56-79 13-36 (201)
10 3qay_A Endolysin; amidase A/B 15.1 69 0.0024 23.5 1.7 72 33-107 76-156 (180)
No 1
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1
Probab=100.00 E-value=1.7e-50 Score=322.28 Aligned_cols=132 Identities=30% Similarity=0.458 Sum_probs=121.2
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCCC-----CC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHH
Q 032132 4 ANREMAVYCFDTLVAHYNSEDAPPPA-----FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALT 74 (146)
Q Consensus 4 ~~~~l~~~ar~~i~~~l~~~~~~~~~-----~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~ 74 (146)
..+.||.+||++|+++|++++.+.++ ++ +.++||||||++ +| +|||||||++| +||+++|++||++
T Consensus 6 e~~~lv~lAR~aI~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~--~g---~LRGCIGt~~p~~~L~~~i~~~Ai~ 80 (207)
T 1zq7_A 6 EGRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE--GG---LLRGCIGHPYPDSTLKEAILDSAIS 80 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE--TT---EEEEEEEECSCCSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCccccccCCChhhcCcccEEEEEEE--CC---eEEEeeccCCccccHHHHHHHHHHH
Confidence 35679999999999999877655442 33 578999999998 78 99999999999 7999999999999
Q ss_pred hhhcCCCCCCCCcCCCCCeeEEEEeecCceec-----CCCcCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132 75 SALKDRRFPPIQARELPSLECTVSILTDFETA-----NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA 146 (146)
Q Consensus 75 AA~~DpRF~Pl~~~El~~l~ieVSvL~~~e~~-----~~~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~ 146 (146)
|||+||||+||+.+||++|.|+||||++|+++ +++.+|+||+|||+|++ |.++||||||||+||||
T Consensus 81 AA~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~~~~~~~~~~~~~~~G~hGlii~~------g~~~g~lLPqVa~E~gW 151 (207)
T 1zq7_A 81 AATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQGLLLPQVAPENDM 151 (207)
T ss_dssp HHHSCTTSCCCCGGGGGGCEEEEEEECCCEECCSCTTTHHHHCCTTTCEEEEEE------TTEEEEECTTHHHHTTC
T ss_pred HccCCCCCCCCCHHHHcCcEEEEEEccCCEEcccccccCHHHcCCCCceEEEEE------CCeeeEECCcchhhcCC
Confidence 99999999999999999999999999999999 77889999999999999 79999999999999999
No 2
>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1
Probab=100.00 E-value=3.7e-50 Score=321.65 Aligned_cols=136 Identities=26% Similarity=0.310 Sum_probs=121.2
Q ss_pred chHHHHHHHHHHHHhhcCCCCC--CCCCC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHHhhhc
Q 032132 5 NREMAVYCFDTLVAHYNSEDAP--PPAFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALK 78 (146)
Q Consensus 5 ~~~l~~~ar~~i~~~l~~~~~~--~~~~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~ 78 (146)
.+.||.+||++|+++|++++.+ ++.++ +.++||||||++.++|.+++||||||||+| +||+++|++||++|||+
T Consensus 10 g~~lv~lAR~aI~~~L~~~~~~~~p~~~~~~l~~~~g~FVTl~~~~~~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~ 89 (214)
T 1vaj_A 10 GEFLVRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVD 89 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccCCCCCCCcccChhhcCcccEEEEEEECcCCCCCceeeeecCCCccccHHHHHHHHHHHhccC
Confidence 5679999999999999876654 22233 678999999997422223499999999999 89999999999999999
Q ss_pred CCCCCCCCcCCCCCeeEEEEeecCceec-----CCCcCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132 79 DRRFPPIQARELPSLECTVSILTDFETA-----NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA 146 (146)
Q Consensus 79 DpRF~Pl~~~El~~l~ieVSvL~~~e~~-----~~~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~ 146 (146)
||||+||+++||++|.|+||||++|+++ +++.+|++|+|||+|++ |.++||||||||+||||
T Consensus 90 DpRF~Pl~~~EL~~l~ieVsvL~~~e~i~~~~~~~~~~~~~G~hGlii~~------g~~~g~~LPqV~~E~~W 156 (214)
T 1vaj_A 90 DPRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK------GIYSGLLLPQVPVEWGW 156 (214)
T ss_dssp CTTSCCCCGGGGGGEEEEEEEECCCEECCSCGGGGGGGCCTTTCEEEEEE------TTEEEEECTHHHHHHTC
T ss_pred CCCCCCCCHHHhcCcEEEEEEcCCcEEcccccccCHHHcCCCCceEEEEe------CCeeEEECCCchhhcCC
Confidence 9999999999999999999999999999 57789999999999999 79999999999999999
No 3
>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1
Probab=100.00 E-value=8.5e-49 Score=316.63 Aligned_cols=136 Identities=26% Similarity=0.353 Sum_probs=120.6
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCC-C----CC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHH
Q 032132 4 ANREMAVYCFDTLVAHYNSEDAPPP-A----FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALT 74 (146)
Q Consensus 4 ~~~~l~~~ar~~i~~~l~~~~~~~~-~----~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~ 74 (146)
..+.||.+||++|+++|++++.+++ . ++ +.++||||||++.+ +.+++|||||||++| +||+++|++||++
T Consensus 16 e~~~lv~lAR~aI~~~L~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~~~-~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~ 94 (230)
T 1wsc_A 16 LGKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYY-GNSTSLRGCIGYVEAVAPLKEIVSKAAIA 94 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCSCHHHHHHHCCCGGGGSEEEEEEEEEEEC-SSCEEEEEEEEEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCCccccccCchhhcCcccEEEEEEECC-CCCCceeeeecCCCccccHHHHHHHHHHH
Confidence 3577999999999999988765322 1 33 67899999999631 223399999999999 7999999999999
Q ss_pred hhhcCCCCCCCCcCCCCCeeEEEEeecCceecC------CCcCcccccceeEEEEecCCCCC-CeeeeecCccccccCC
Q 032132 75 SALKDRRFPPIQARELPSLECTVSILTDFETAN------NYLDWEVGTHGLIIEFTDPEYST-RRSATYLPEVAAHEEA 146 (146)
Q Consensus 75 AA~~DpRF~Pl~~~El~~l~ieVSvL~~~e~~~------~~~~~~~G~hGlii~~~~~~~~~-~~~~~~LPqV~~E~~~ 146 (146)
|||+||||+||+.+||++|.|+||||++|++++ ++.+|+||+|||+|++ | .++||||||||.||||
T Consensus 95 AA~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~i~~~~~~~~~~~~~~G~hGlii~~------g~~~~g~lLPqV~~e~~w 167 (230)
T 1wsc_A 95 AAFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY------GILYSGLLLPQVPMEYCW 167 (230)
T ss_dssp HHHTCTTSCCCCHHHHTTEEEEEEEECCCEECCCSCGGGGGGGCCTTTCEEEEEE------TTTEEEEECTHHHHHTTC
T ss_pred hccCCCCCCCCCHHHHcCcEEEEEEcCCcEEcccCCcccCHHHcCCCCCeEEEee------CCCceEEECCCcccccCC
Confidence 999999999999999999999999999999994 6789999999999999 5 9999999999999999
No 4
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=65.96 E-value=6 Score=28.99 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCCceEEEEEEecCC-CCccceeeecccccccHHHHHHHHHHHhhhcCCCCCCCCcCCCCCeeEEEEeecCceecCCC-
Q 032132 32 EGQHPLFVTWKKVVNG-GEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNY- 109 (146)
Q Consensus 32 ~~~~g~FVTl~~~~~g-~~~~LRGCIGt~~p~pL~~~i~~~A~~AA~~DpRF~Pl~~~El~~l~ieVSvL~~~e~~~~~- 109 (146)
+-+-|.-||+.-..+- ...+||.|.-....+ .|-|+|=||-.-+- -=++.++.|+|.+.+-.+..+
T Consensus 51 ~V~DGT~Vtv~AGNDEn~~aelrN~~a~mknq-----------vA~FnDLRFvgRSG-RGKsFtlTItv~t~PpqvAty~ 118 (140)
T 1eaq_A 51 DVPDGTLVTVMAGNDENYSAELRNATAAMKNQ-----------VARFNDLRFVGRSG-RGKSFTLTITVFTNPPQVATYH 118 (140)
T ss_dssp CCCTTCEEEEEEEETTEEEECEESCEEEEETT-----------EEECSSCEECSCCC-TTCCBEEEEEECSSSCEEEECS
T ss_pred ccCCCCEEEEEecCCcchhHHHHhHHHHHhhc-----------cceeecccccccCC-CCccEEEEEEEecCCcchhhhe
Confidence 5678999999874321 124899998766543 35799999988543 357789999999998777765
Q ss_pred cCccccccee
Q 032132 110 LDWEVGTHGL 119 (146)
Q Consensus 110 ~~~~~G~hGl 119 (146)
..+++-.||=
T Consensus 119 ~AIKVTVDGP 128 (140)
T 1eaq_A 119 RAIKITVDGP 128 (140)
T ss_dssp SCBEEESSCC
T ss_pred eeEEEEecCC
Confidence 4577777774
No 5
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.04 E-value=11 Score=22.89 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=13.2
Q ss_pred CCCCCCCCcCCCCCe
Q 032132 79 DRRFPPIQARELPSL 93 (146)
Q Consensus 79 DpRF~Pl~~~El~~l 93 (146)
|.|..|||.+||+.+
T Consensus 16 ~~rnrpltDEeLD~~ 30 (47)
T 2fho_A 16 DERNRPLSDEELDAM 30 (47)
T ss_dssp CCCCCCSCTTHHHHH
T ss_pred ccccCCCCHHHHHHh
Confidence 779999999999875
No 6
>3evs_C Bone morphogenetic protein receptor type-1B; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Mus musculus}
Probab=18.14 E-value=69 Score=22.41 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=17.7
Q ss_pred CCceEEEEEEecCCCCccceeeecc
Q 032132 34 QHPLFVTWKKVVNGGEPRLRGCIGT 58 (146)
Q Consensus 34 ~~g~FVTl~~~~~g~~~~LRGCIGt 58 (146)
...+|+++....+|....-|||+..
T Consensus 43 ~g~Cf~sv~~~~~G~~~~~~GCl~~ 67 (119)
T 3evs_C 43 DGYCFTMIEEDDSGMPVVTSGCLGL 67 (119)
T ss_dssp SSEEEEEEEECTTCSEEEEEEEECS
T ss_pred CCEEEEEEEEcCCCcEEEEEcCCcc
Confidence 3568999987445644457999984
No 7
>2l9x_A Uncharacterized protein; thioether bridges, helical loops, crosslinked, post-translat modified, antimicrobial protein; HET: DTH; NMR {Bacillus cereus 95}
Probab=17.75 E-value=18 Score=19.46 Aligned_cols=9 Identities=44% Similarity=0.969 Sum_probs=5.9
Q ss_pred ceeeecccc
Q 032132 52 LRGCIGTLE 60 (146)
Q Consensus 52 LRGCIGt~~ 60 (146)
.-||||+-.
T Consensus 6 vigcigscv 14 (30)
T 2l9x_A 6 VIGCIGSCV 14 (30)
T ss_dssp HHHHTTHHH
T ss_pred EEeeeeeEE
Confidence 458888643
No 8
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=17.10 E-value=1.1e+02 Score=20.43 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=19.0
Q ss_pred cccccccHHHHHHHHHHHhhhcCCCCCCCC
Q 032132 57 GTLEARCLINGFKDYALTSALKDRRFPPIQ 86 (146)
Q Consensus 57 Gt~~p~pL~~~i~~~A~~AA~~DpRF~Pl~ 86 (146)
|++......++|.+. +..||+|-.| ||+
T Consensus 1 ~~~~~m~~~~ei~~q-i~~a~~~a~F-PI~ 28 (84)
T 1iio_A 1 GSHMKMGVKEDIRGQ-IIGALAGADF-PIN 28 (84)
T ss_dssp CCCCCCSHHHHHHHH-HHHHHTTSSS-TTB
T ss_pred CCccchhhHHHHHHH-HHHHHcCCCC-CCC
Confidence 455555555556555 7889999999 554
No 9
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=16.34 E-value=74 Score=23.88 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=19.6
Q ss_pred ecccccccHHHHHHHHHHHhhhcC
Q 032132 56 IGTLEARCLINGFKDYALTSALKD 79 (146)
Q Consensus 56 IGt~~p~pL~~~i~~~A~~AA~~D 79 (146)
||+..|..+..+|.+||+.||...
T Consensus 13 ig~~~~~~~v~Elv~NsiDa~~~g 36 (201)
T 3fv5_A 13 TDTTRPNHLGQEVIDNSVDEALAG 36 (201)
T ss_dssp SCTTSTHHHHHHHHHHHHHHHHTT
T ss_pred ECCCChhhhhHHHHHHHHHHHhcC
Confidence 566666678899999999999864
No 10
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=15.08 E-value=69 Score=23.54 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=48.8
Q ss_pred CCCceEEEEEEecCCCCccceeeeccccc---ccHHHHHHHHHHHhhhcC------CCCCCCCcCCCCCeeEEEEeecCc
Q 032132 33 GQHPLFVTWKKVVNGGEPRLRGCIGTLEA---RCLINGFKDYALTSALKD------RRFPPIQARELPSLECTVSILTDF 103 (146)
Q Consensus 33 ~~~g~FVTl~~~~~g~~~~LRGCIGt~~p---~pL~~~i~~~A~~AA~~D------pRF~Pl~~~El~~l~ieVSvL~~~ 103 (146)
...-+||+++... ....-+|+-=.+.+ ..|++.|.+. +..++.| ..|.=|.....|.+-||+-.++++
T Consensus 76 ~~aDlfISIH~Na--~~~~~~G~ev~~~~~~s~~lA~~i~~~-l~~~~~~rGvk~~~~~~vLr~t~~PavLvE~gFisN~ 152 (180)
T 3qay_A 76 GGYDLLIELHLNA--SNGQGKGSEVLYYSNKGLEYATRICDK-LGTVFKNRGAKLDKRLYILNSSKPTAVLIESFFCDNK 152 (180)
T ss_dssp SCCSEEEEEEEEC--SSSCCCSEEEEESSHHHHHHHHHHHHH-HTTTSCEEEEEECSCCHHHHSCSSEEEEEEEEETTCH
T ss_pred cCCCEEEEeeeCC--CCCCCCEEEEEEECchHHHHHHHHHHH-HHHHhccCCcccCCCeEEEcCCCCCEEEEEecccCCH
Confidence 4678999999853 12367888766665 3677766655 3333543 235566777888999999999888
Q ss_pred eecC
Q 032132 104 ETAN 107 (146)
Q Consensus 104 e~~~ 107 (146)
++..
T Consensus 153 ~d~~ 156 (180)
T 3qay_A 153 EDYD 156 (180)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
Done!