BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032133
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1
Length = 230
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 89/111 (80%), Positives = 97/111 (87%)
Query: 35 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
SMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV
Sbjct: 120 SMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 179
Query: 95 NGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESAS 145
NGEIIPC YPTYQP + + SKY SK Y R+RDGPPAE+R + ES++
Sbjct: 180 NGEIIPCQYPTYQPKQSRSSKYKSKAYVRQRDGPPAEQRRPKQEATPESST 230
>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis
thaliana GN=At3g15000 PE=1 SV=1
Length = 395
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 35 SMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 94
S +EA+ +Y+ ST Y F VSE+ S K K L V WVLPDSY+DV+NKDYGG+ ++
Sbjct: 130 SEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFI 189
Query: 95 NGEIIP 100
+G+ +P
Sbjct: 190 DGKAVP 195
>sp|Q9C5U1|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1
Length = 1036
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 33 CYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDY 88
C M++ KK A + + F TVS E G+ G+L +L D+ +DV +DY
Sbjct: 434 CDKMKQLKKKAEA-ADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDY 488
>sp|B9LQZ7|SYS_HALLT Serine--tRNA ligase OS=Halorubrum lacusprofundi (strain ATCC 49239
/ DSM 5036 / JCM 8891 / ACAM 34) GN=serS PE=3 SV=1
Length = 456
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 73 LWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKES 114
LW+LP + + V N D+ + GE +P Y Y PN R+E+
Sbjct: 236 LWLLPTAEVPVTNLHR--DEILLGEDLPLKYQAYTPNFRQEA 275
>sp|Q9C5U2|AHK2_ARATH Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1
Length = 1176
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 33 CYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDK 92
C M E K A + + F TVS E G+ G+L +L D+ +D K DY
Sbjct: 571 CQKMRELKARAEA-ADIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTA 629
Query: 93 YVNGE 97
+ +G+
Sbjct: 630 HGSGK 634
>sp|Q89FG1|PQQE_BRAJA Coenzyme PQQ synthesis protein E OS=Bradyrhizobium japonicum
(strain USDA 110) GN=pqqE PE=3 SV=2
Length = 380
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 39 AKKNMYAFSTTTYTGFQCT-VSEETSEKFKGLPGVLWVLPDSYIDVKNKDYG--GDKYVN 95
A KN A T +CT + EE E+ KG + +V+PD Y K G G ++ N
Sbjct: 197 ALKNRAALMPTVAQLDECTRLVEEARERLKGRLSIDYVVPDYYALRPKKCMGGWGRQFFN 256
Query: 96 ----GEIIPC 101
G+++PC
Sbjct: 257 ISPAGKVLPC 266
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 33 CYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNK 86
CY A++ M AF +T + + V+ +E +PG+ +V+ Y+ ++ +
Sbjct: 334 CYGALPAREQMKAFDSTPHGTRKVVVATNIAEASITIPGICYVIDTGYVKLRAQ 387
>sp|P41832|BNI1_YEAST Protein BNI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=BNI1 PE=1 SV=3
Length = 1953
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 92 KYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESASS 146
+Y+NG++ P + R S Y +R + + TRQ GQS SASS
Sbjct: 98 QYMNGKL-SGDVPVSSQHARSHSMQSKYSYSKRNSSQASNKLTRQHTGQSHSASS 151
>sp|A1SLQ7|RRF_NOCSJ Ribosome-recycling factor OS=Nocardioides sp. (strain BAA-499 /
JS614) GN=frr PE=3 SV=1
Length = 185
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 83 VKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQ 140
+++ D G + +G++I C +P +RKE Y+ + +G A R R+ A Q
Sbjct: 82 IRDSDLGVNPADDGKVIRCVFPELTEERRKE--YIKISRHKAEEGRVAVRNLRRTAKQ 137
>sp|Q6N8F3|PQQE_RHOPA Coenzyme PQQ synthesis protein E OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=pqqE PE=3 SV=1
Length = 377
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 39 AKKNMYAFSTTTYTGFQCTVSEETS-EKFKGLPGVLWVLPDSYIDVKNKDYG--GDKYVN 95
A KN A T CT + E + E+ KG + +V+PD Y K G G ++ N
Sbjct: 197 ALKNRAALMPTLAQIEDCTATVEAARERLKGQLAIDYVIPDYYAARPKKCMGGWGRQFFN 256
Query: 96 ----GEIIPC 101
G+++PC
Sbjct: 257 ISPSGKVLPC 266
>sp|Q9D404|OXSM_MOUSE 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Mus
musculus GN=Oxsm PE=2 SV=1
Length = 459
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 90 GDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESA 144
GD+Y N IPC+ Y P E ++ + + + D T A G +E A
Sbjct: 78 GDEYKN---IPCSVAAYVPRGPHEGQFNEENFVSKSDAKSMSSSTIMAVGAAELA 129
>sp|A7YVH9|PYRD1_BOVIN Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 1 OS=Bos taurus GN=PYROXD1 PE=2 SV=1
Length = 502
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 72 VLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAE 131
V+WV+ D I D G +++ ++I +++ E+K KR +G E
Sbjct: 171 VIWVIKDKAIGNTFFDAGAAEFLTSKLI---------DEKPEAKIAQKRTRYTTEGRKKE 221
Query: 132 RRTRQAAGQSESA 144
+ R +AG SA
Sbjct: 222 TQARASAGNVGSA 234
>sp|A0RZ09|RL2_CENSY 50S ribosomal protein L2P OS=Cenarchaeum symbiosum (strain A)
GN=rpl2p PE=3 SV=1
Length = 243
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 83 VKNKDYGGDKY---VNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERR 133
V+ + GG ++ G+I YP ++ +++E + +ER RD P A+ R
Sbjct: 7 VRRRGRGGMQFRAATTGKIARAKYPAFELGEQREGTVIDLVHERGRDAPLAKIR 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,367,638
Number of Sequences: 539616
Number of extensions: 2376827
Number of successful extensions: 3727
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3718
Number of HSP's gapped (non-prelim): 22
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)