Query 032133
Match_columns 146
No_of_seqs 131 out of 324
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 10:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05922 Inhibitor_I9: Peptida 99.3 5.8E-12 1.3E-16 84.3 3.9 62 22-83 16-81 (82)
2 PRK04435 hypothetical protein; 86.2 0.8 1.7E-05 35.3 3.1 68 9-76 49-142 (147)
3 TIGR02165 cas_GSU0054 CRISPR-a 48.2 12 0.00025 34.5 1.8 56 9-74 66-124 (465)
4 cd04901 ACT_3PGDH C-terminal A 45.6 22 0.00047 22.4 2.3 19 58-76 49-67 (69)
5 PF03927 NapD: NapD protein; 41.1 24 0.00053 24.7 2.2 17 60-76 54-70 (79)
6 COG4492 PheB ACT domain-contai 40.9 7 0.00015 31.5 -0.6 68 8-75 51-144 (150)
7 PRK10553 assembly protein for 36.9 28 0.00061 25.2 2.1 17 61-77 58-74 (87)
8 COG3062 NapD Uncharacterized p 31.0 39 0.00085 25.4 2.0 17 60-76 57-73 (94)
9 PRK09929 hypothetical protein; 29.9 17 0.00038 26.9 -0.0 26 50-76 16-46 (91)
10 cd04888 ACT_PheB-BS C-terminal 28.8 56 0.0012 20.8 2.3 49 28-76 13-73 (76)
11 PF13291 ACT_4: ACT domain; PD 24.4 61 0.0013 21.4 1.9 51 26-76 17-79 (80)
12 PF01037 AsnC_trans_reg: AsnC 24.1 82 0.0018 19.9 2.4 17 60-76 13-29 (74)
13 PF00403 HMA: Heavy-metal-asso 23.5 63 0.0014 20.2 1.8 15 64-78 18-32 (62)
14 cd04879 ACT_3PGDH-like ACT_3PG 22.9 85 0.0018 18.9 2.2 18 59-76 52-69 (71)
15 PF07816 DUF1645: Protein of u 21.3 40 0.00087 27.0 0.6 17 91-107 3-19 (193)
16 KOG0723 Molecular chaperone (D 20.8 26 0.00056 27.2 -0.6 45 52-98 47-98 (112)
No 1
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=99.25 E-value=5.8e-12 Score=84.34 Aligned_cols=62 Identities=26% Similarity=0.312 Sum_probs=49.1
Q ss_pred hhhHHHHHHhhhCCH----HHHhhceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCcccc
Q 032133 22 IRSSGSHMGFSCYSM----EEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDV 83 (146)
Q Consensus 22 i~sH~~~LaSVLGSe----EeAk~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L 83 (146)
..+|.+++++++.+. ......++|+|...|+||+|.||++++++|+++|+|.+|.||..+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l 81 (82)
T PF05922_consen 16 FSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSL 81 (82)
T ss_dssp HHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE
T ss_pred HHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEec
Confidence 778888888776542 23467789999999999999999999999999999999999998775
No 2
>PRK04435 hypothetical protein; Provisional
Probab=86.19 E-value=0.8 Score=35.34 Aligned_cols=68 Identities=26% Similarity=0.353 Sum_probs=44.4
Q ss_pred EEEeeecceeccchh--------------hHHHHHHhhhCCHHHHhhceeeEeecc-eee-----eEeEeCHH------H
Q 032133 9 VHYYKTTDYVFPSIR--------------SSGSHMGFSCYSMEEAKKNMYAFSTTT-YTG-----FQCTVSEE------T 62 (146)
Q Consensus 9 ~~~~~~~~~~~~~i~--------------sH~~~LaSVLGSeEeAk~sI~ySY~~s-fnG-----FAA~LTee------e 62 (146)
--|||--|+|||.-+ +-..+|+.++.-..+....|+...... .+| |.....+. -
T Consensus 49 s~~ykykd~vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~L 128 (147)
T PRK04435 49 SAFYKYKDYVFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDEL 128 (147)
T ss_pred HHHhcCCCeeECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHH
Confidence 358999999999633 234578888876666666776543211 234 44444333 3
Q ss_pred HHHhhCCCCeEEEc
Q 032133 63 SEKFKGLPGVLWVL 76 (146)
Q Consensus 63 AekLs~lPGVVSVf 76 (146)
.++|++++||..|-
T Consensus 129 i~~L~~i~gV~~V~ 142 (147)
T PRK04435 129 LEKLRNLDGVEKVE 142 (147)
T ss_pred HHHHHcCCCcEEEE
Confidence 67899999999873
No 3
>TIGR02165 cas_GSU0054 CRISPR-associated protein, GSU0054 family. This model represents a rare CRISPR-associated protein. So far, members are found in Geobacter sulfurreducens and in two unpublished genomes: Gemmata obscuriglobus and Actinomyces naeslundii.CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.
Probab=48.16 E-value=12 Score=34.52 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=38.7
Q ss_pred EEE-eeecceeccchhhHHHHHHhhhCCHHHHhhceeeEee--cceeeeEeEeCHHHHHHhhCCCCeEE
Q 032133 9 VHY-YKTTDYVFPSIRSSGSHMGFSCYSMEEAKKNMYAFST--TTYTGFQCTVSEETSEKFKGLPGVLW 74 (146)
Q Consensus 9 ~~~-~~~~~~~~~~i~sH~~~LaSVLGSeEeAk~sI~ySY~--~sfnGFAA~LTeeeAekLs~lPGVVS 74 (146)
||| |...|-+||.|..|...|-..- .+|-|-=+ .-..|=+++|+|+|++.| ||=.|
T Consensus 66 vhYL~~ige~~~pe~a~~~e~iv~~A-------~~i~hLGWGiDmv~G~a~~lsee~a~~l---~gE~W 124 (465)
T TIGR02165 66 VHYLWPIGDPTAPEFADHKEAIVEAA-------QNINHLGWGIDMVAGDAAMLSEEEAANL---PGEHW 124 (465)
T ss_pred ceeeeecCCCCCchHHHHHHHHHHHH-------hhccccccchhhcccchhhhchhhhhhC---Ccccc
Confidence 777 6778889999999988876542 22433222 224688999999998754 55444
No 4
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=45.63 E-value=22 Score=22.36 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=15.9
Q ss_pred eCHHHHHHhhCCCCeEEEc
Q 032133 58 VSEETSEKFKGLPGVLWVL 76 (146)
Q Consensus 58 LTeeeAekLs~lPGVVSVf 76 (146)
..++-.++|+++|||.+|.
T Consensus 49 ~l~~li~~l~~~~~V~~v~ 67 (69)
T cd04901 49 VSEELLEALRAIPGTIRVR 67 (69)
T ss_pred CCHHHHHHHHcCCCeEEEE
Confidence 4467779999999999985
No 5
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=41.14 E-value=24 Score=24.65 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=13.6
Q ss_pred HHHHHHhhCCCCeEEEc
Q 032133 60 EETSEKFKGLPGVLWVL 76 (146)
Q Consensus 60 eeeAekLs~lPGVVSVf 76 (146)
.+...+|..+|||+++-
T Consensus 54 ~~~~~~i~~l~GVlsa~ 70 (79)
T PF03927_consen 54 VDLIDAINALPGVLSAS 70 (79)
T ss_dssp HHHHHHHCCSTTEEEEE
T ss_pred HHHHHHHHcCCCceEEE
Confidence 34567899999999985
No 6
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=40.95 E-value=7 Score=31.53 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=42.6
Q ss_pred EEEEeeecceecc--------------chhhHHHHHHhhhCCHHHHhhceeeEee-cceeeeEeE-e----------CHH
Q 032133 8 RVHYYKTTDYVFP--------------SIRSSGSHMGFSCYSMEEAKKNMYAFST-TTYTGFQCT-V----------SEE 61 (146)
Q Consensus 8 ~~~~~~~~~~~~~--------------~i~sH~~~LaSVLGSeEeAk~sI~ySY~-~sfnGFAA~-L----------Tee 61 (146)
|-.|||-.||||| +|++-..+|+.||.-...+.-+++-.=. =.++|=|-. | =++
T Consensus 51 RSafYKYkD~vfpf~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ 130 (150)
T COG4492 51 RSAFYKYKDFVFPFYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDK 130 (150)
T ss_pred HHHHHhhccceeehhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHH
Confidence 4569999999999 4667788899998655544444442211 113443210 1 034
Q ss_pred HHHHhhCCCCeEEE
Q 032133 62 TSEKFKGLPGVLWV 75 (146)
Q Consensus 62 eAekLs~lPGVVSV 75 (146)
-.++|.++.||.-|
T Consensus 131 ii~kl~k~e~V~kV 144 (150)
T COG4492 131 IIEKLRKVEGVEKV 144 (150)
T ss_pred HHHHHhcccceeEE
Confidence 56788999998766
No 7
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=36.94 E-value=28 Score=25.21 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.2
Q ss_pred HHHHHhhCCCCeEEEcC
Q 032133 61 ETSEKFKGLPGVLWVLP 77 (146)
Q Consensus 61 eeAekLs~lPGVVSVfP 77 (146)
+...+|..+|||+|+-.
T Consensus 58 ~~i~~I~~l~GVlsa~l 74 (87)
T PRK10553 58 QTIESVRNVEGVLAVSL 74 (87)
T ss_pred HHHHHHHcCCCceEEEE
Confidence 56788999999999853
No 8
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=30.97 E-value=39 Score=25.44 Aligned_cols=17 Identities=53% Similarity=0.640 Sum_probs=14.4
Q ss_pred HHHHHHhhCCCCeEEEc
Q 032133 60 EETSEKFKGLPGVLWVL 76 (146)
Q Consensus 60 eeeAekLs~lPGVVSVf 76 (146)
-+..+.|+++|||++|+
T Consensus 57 ~~tie~i~nl~gVlav~ 73 (94)
T COG3062 57 LETIESIRNLPGVLAVS 73 (94)
T ss_pred HHHHHHHhcCCceeEEE
Confidence 45678899999999985
No 9
>PRK09929 hypothetical protein; Provisional
Probab=29.86 E-value=17 Score=26.87 Aligned_cols=26 Identities=8% Similarity=0.247 Sum_probs=19.5
Q ss_pred ceeeeEeE-eCHHHHH----HhhCCCCeEEEc
Q 032133 50 TYTGFQCT-VSEETSE----KFKGLPGVLWVL 76 (146)
Q Consensus 50 sfnGFAA~-LTeeeAe----kLs~lPGVVSVf 76 (146)
+|+-|||. ++.+|+. .|.++ |+|||-
T Consensus 16 S~~A~AA~~i~~~qa~~~~~~l~ki-GtVSvs 46 (91)
T PRK09929 16 VTNVYAAELMTKAEFEKVESQYEKI-GTISTS 46 (91)
T ss_pred chhhhhhhhhCHHHhhhhhccccee-EEEEEc
Confidence 57778986 7888864 46666 999986
No 10
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.84 E-value=56 Score=20.81 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=27.7
Q ss_pred HHHhhhCCHHHHhhceeeEeecc----e--eeeEeEeCHHH------HHHhhCCCCeEEEc
Q 032133 28 HMGFSCYSMEEAKKNMYAFSTTT----Y--TGFQCTVSEET------SEKFKGLPGVLWVL 76 (146)
Q Consensus 28 ~LaSVLGSeEeAk~sI~ySY~~s----f--nGFAA~LTeee------AekLs~lPGVVSVf 76 (146)
+|+.++..-.++.-.|....... . --|.....+.+ .++|+++|||.+|.
T Consensus 13 ~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~ 73 (76)
T cd04888 13 VLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVE 73 (76)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEE
Confidence 55666555555556665443211 1 22333334443 57899999999984
No 11
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=24.38 E-value=61 Score=21.37 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=27.5
Q ss_pred HHHHHhhhCCHHHHhhceeeEeecce--eee-----EeEeC-----HHHHHHhhCCCCeEEEc
Q 032133 26 GSHMGFSCYSMEEAKKNMYAFSTTTY--TGF-----QCTVS-----EETSEKFKGLPGVLWVL 76 (146)
Q Consensus 26 ~~~LaSVLGSeEeAk~sI~ySY~~sf--nGF-----AA~LT-----eeeAekLs~lPGVVSVf 76 (146)
..+|+.++....+....|...-.... +|+ ...+. ..-.++|+++|||.+|.
T Consensus 17 ~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 17 PGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred CCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 34666665444444555544322221 222 22222 24567899999999985
No 12
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=24.10 E-value=82 Score=19.93 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=13.2
Q ss_pred HHHHHHhhCCCCeEEEc
Q 032133 60 EETSEKFKGLPGVLWVL 76 (146)
Q Consensus 60 eeeAekLs~lPGVVSVf 76 (146)
++-++.|+++|+|+.+.
T Consensus 13 ~~~~~~l~~~p~V~~~~ 29 (74)
T PF01037_consen 13 DEFAEALAEIPEVVECY 29 (74)
T ss_dssp HHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 35577888999998875
No 13
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=23.45 E-value=63 Score=20.22 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=11.8
Q ss_pred HHhhCCCCeEEEcCC
Q 032133 64 EKFKGLPGVLWVLPD 78 (146)
Q Consensus 64 ekLs~lPGVVSVfPd 78 (146)
.+|+++|||.+|-=|
T Consensus 18 ~~l~~~~GV~~v~vd 32 (62)
T PF00403_consen 18 KALSKLPGVKSVKVD 32 (62)
T ss_dssp HHHHTSTTEEEEEEE
T ss_pred HHHhcCCCCcEEEEE
Confidence 579999999887433
No 14
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=22.89 E-value=85 Score=18.86 Aligned_cols=18 Identities=44% Similarity=0.735 Sum_probs=15.2
Q ss_pred CHHHHHHhhCCCCeEEEc
Q 032133 59 SEETSEKFKGLPGVLWVL 76 (146)
Q Consensus 59 TeeeAekLs~lPGVVSVf 76 (146)
.++-.++|++++||..|.
T Consensus 52 ~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 52 PEEVLEELKALPGIIRVR 69 (71)
T ss_pred CHHHHHHHHcCCCeEEEE
Confidence 347889999999999884
No 15
>PF07816 DUF1645: Protein of unknown function (DUF1645); InterPro: IPR012442 These sequences are derived from a number of hypothetical plant proteins. The region in question is approximately 270 amino acids long. Some members of this family are annotated as yeast pheromone receptor proteins AR781 but no literature was found to support this.
Probab=21.29 E-value=40 Score=27.02 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=13.1
Q ss_pred CccccceeccCCCCCCC
Q 032133 91 DKYVNGEIIPCTYPTYQ 107 (146)
Q Consensus 91 d~~~~g~i~p~~~p~~~ 107 (146)
|+|.||+|.|--+|..+
T Consensus 3 ELF~~GkIrPl~pP~~~ 19 (193)
T PF07816_consen 3 ELFDNGKIRPLKPPLFD 19 (193)
T ss_pred ccccCCEEeecCCCccc
Confidence 79999999998644433
No 16
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=26 Score=27.16 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=30.5
Q ss_pred eeeEeEeCHHHHHHhhCCCCeEEEcCCCc-------cccCCcCCCCCcccccee
Q 032133 52 TGFQCTVSEETSEKFKGLPGVLWVLPDSY-------IDVKNKDYGGDKYVNGEI 98 (146)
Q Consensus 52 nGFAA~LTeeeAekLs~lPGVVSVfPd~~-------~~L~~kdy~Gd~~~~g~i 98 (146)
-||..++|..||..|-+.- -++-+++. +-+--.|-||-+|+-.+|
T Consensus 47 GGF~~kMsr~EA~lIL~v~--~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKI 98 (112)
T KOG0723|consen 47 GGFEPKMSRREAALILGVT--PSLDKDKIKEAHRRIMLANHPDRGGSPYLASKI 98 (112)
T ss_pred cccccccchHHHHHHhCCC--ccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHH
Confidence 4999999999999987665 23333322 223346888888876665
Done!