Query 032133
Match_columns 146
No_of_seqs 131 out of 324
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:12:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2n_P Proprotein convertase s 99.4 3.2E-14 1.1E-18 103.9 2.3 61 22-83 53-113 (114)
2 3cnq_P Subtilisin BPN'; unclea 99.0 4.2E-10 1.4E-14 75.7 4.2 43 41-84 34-76 (80)
3 2qtw_A Proprotein convertase s 99.0 3.7E-10 1.2E-14 84.0 4.2 61 22-83 63-123 (124)
4 1v5i_B POIA1, IA-1=serine prot 98.2 3.9E-06 1.3E-10 56.8 5.9 55 22-83 18-75 (76)
5 2p4e_P Proprotein convertase s 97.0 0.00025 8.5E-09 65.6 2.6 42 42-83 110-151 (692)
6 3t41_A Epidermin leader peptid 96.7 0.0023 7.8E-08 54.1 5.7 46 39-85 64-110 (471)
7 3afg_A Subtilisin-like serine 96.4 0.0019 6.5E-08 57.0 3.8 44 41-85 60-114 (539)
8 2z30_B TK-subtilisin; thermoco 96.3 0.003 1E-07 41.4 3.2 42 39-81 21-62 (65)
9 2z2z_A TK-subtilisin precursor 96.2 0.0025 8.4E-08 53.3 2.9 43 41-84 24-66 (395)
10 3ftj_A MACB, macrolide export 45.0 11 0.00038 27.5 2.1 25 55-79 32-56 (226)
11 2jsx_A Protein NAPD; TAT, proo 26.9 37 0.0013 23.6 2.3 16 62-77 59-74 (95)
12 2zbc_A 83AA long hypothetical 24.6 51 0.0017 20.5 2.5 18 60-77 16-33 (83)
13 2jna_A Putative secreted prote 20.8 21 0.00071 25.7 0.0 28 49-77 15-45 (104)
14 2ofk_A 3-methyladenine DNA gly 20.3 13 0.00046 29.3 -1.2 30 45-74 54-87 (183)
15 2k1h_A Uncharacterized protein 20.2 50 0.0017 23.2 1.9 28 59-86 38-65 (94)
No 1
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=99.43 E-value=3.2e-14 Score=103.89 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=54.6
Q ss_pred hhhHHHHHHhhhCCHHHHhhceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCcccc
Q 032133 22 IRSSGSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDV 83 (146)
Q Consensus 22 i~sH~~~LaSVLGSeEeAk~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L 83 (146)
+.+|++||.+++++ +.+...|+|+|++.|+||+|+||++++++|+++|+|++|+||..+++
T Consensus 53 ~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 53 SERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp HHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 67899999999865 33567899999999999999999999999999999999999987654
No 2
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=98.97 E-value=4.2e-10 Score=75.70 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=40.4
Q ss_pred hceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCccccC
Q 032133 41 KNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVK 84 (146)
Q Consensus 41 ~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L~ 84 (146)
..|+|+|++ |+||+|+|+++++++|+++|+|.+|.||..+++.
T Consensus 34 ~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~ 76 (80)
T 3cnq_P 34 GKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRAL 76 (80)
T ss_dssp CEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEEC
T ss_pred CcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEe
Confidence 469999998 9999999999999999999999999999988764
No 3
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=98.97 E-value=3.7e-10 Score=84.04 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=46.8
Q ss_pred hhhHHHHHHhhhCCHHHHhhceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCcccc
Q 032133 22 IRSSGSHMGFSCYSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDV 83 (146)
Q Consensus 22 i~sH~~~LaSVLGSeEeAk~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L 83 (146)
+..|.++|.+++.. ...-..|.|+|++.|+||+|+||++++++|+++|+|++|.||..++.
T Consensus 63 ~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 63 SERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp HHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 45566666553210 00113699999999999999999999999999999999999987654
No 4
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=98.16 E-value=3.9e-06 Score=56.79 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=45.2
Q ss_pred hhhHHHHHHhhhCCHHHHhhceeeEe-ecceeeeEeEeCHHHHHHhhCC--CCeEEEcCCCcccc
Q 032133 22 IRSSGSHMGFSCYSMEEAKKNMYAFS-TTTYTGFQCTVSEETSEKFKGL--PGVLWVLPDSYIDV 83 (146)
Q Consensus 22 i~sH~~~LaSVLGSeEeAk~sI~ySY-~~sfnGFAA~LTeeeAekLs~l--PGVVSVfPd~~~~L 83 (146)
++.|..++...- ..|.|.| ...|+||+|.|++++++.|+.. |.|..|-+|...++
T Consensus 18 ~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 18 IRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp HHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred HHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 556766665532 3589999 4899999999999999999999 78999999987654
No 5
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Probab=97.02 E-value=0.00025 Score=65.60 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=39.2
Q ss_pred ceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCcccc
Q 032133 42 NMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDV 83 (146)
Q Consensus 42 sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L 83 (146)
.|.++|++.|+||+++|+++++++|+++|+|.+|.||..+..
T Consensus 110 ~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~ 151 (692)
T 2p4e_P 110 KILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 151 (692)
T ss_dssp EEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred ceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecccccc
Confidence 589999999999999999999999999999999999987654
No 6
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=96.68 E-value=0.0023 Score=54.14 Aligned_cols=46 Identities=4% Similarity=-0.017 Sum_probs=39.6
Q ss_pred HhhceeeEeecceeeeEeEeCHHHHHHhhC-CCCeEEEcCCCccccCC
Q 032133 39 AKKNMYAFSTTTYTGFQCTVSEETSEKFKG-LPGVLWVLPDSYIDVKN 85 (146)
Q Consensus 39 Ak~sI~ySY~~sfnGFAA~LTeeeAekLs~-lPGVVSVfPd~~~~L~~ 85 (146)
..-.+++.|. .|+||+++|+++++++|++ +|+|.+|.|+..+.+..
T Consensus 64 ~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~ 110 (471)
T 3t41_A 64 KSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITS 110 (471)
T ss_dssp HTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCC
T ss_pred CCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceecccc
Confidence 3345788884 5999999999999999999 99999999998877643
No 7
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=96.44 E-value=0.0019 Score=56.99 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=39.0
Q ss_pred hceeeEeecceeeeEeEeCHHHHHHh-----------hCCCCeEEEcCCCccccCC
Q 032133 41 KNMYAFSTTTYTGFQCTVSEETSEKF-----------KGLPGVLWVLPDSYIDVKN 85 (146)
Q Consensus 41 ~sI~ySY~~sfnGFAA~LTeeeAekL-----------s~lPGVVSVfPd~~~~L~~ 85 (146)
..+.|.|+ .|+||+++|+++++++| +++|+|.+|.||..+++..
T Consensus 60 ~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~ 114 (539)
T 3afg_A 60 AKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAV 114 (539)
T ss_dssp CEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-
T ss_pred CeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccC
Confidence 46889996 69999999999999999 8999999999999887753
No 8
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=96.28 E-value=0.003 Score=41.39 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=37.0
Q ss_pred HhhceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCcc
Q 032133 39 AKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYI 81 (146)
Q Consensus 39 Ak~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~ 81 (146)
.--.|+|.+. .+++++|.|+++.+++|+++|||..|-+|...
T Consensus 21 ~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v 62 (65)
T 2z30_B 21 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQA 62 (65)
T ss_dssp GTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEE
T ss_pred CCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEE
Confidence 3356889996 59999999999999999999999999999764
No 9
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A
Probab=96.18 E-value=0.0025 Score=53.35 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=39.1
Q ss_pred hceeeEeecceeeeEeEeCHHHHHHhhCCCCeEEEcCCCccccC
Q 032133 41 KNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVK 84 (146)
Q Consensus 41 ~sI~ySY~~sfnGFAA~LTeeeAekLs~lPGVVSVfPd~~~~L~ 84 (146)
..+++.|.. |+||+++|+++++++|+++|+|.+|.|+..+.+.
T Consensus 24 ~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~ 66 (395)
T 2z2z_A 24 GHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLL 66 (395)
T ss_dssp CEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEEC
T ss_pred CEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEeeeeccc
Confidence 458899975 9999999999999999999999999999988764
No 10
>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB; macrolide-specific pump, ABC-type transporter; 2.00A {Actinobacillus actinomycetemcomitans}
Probab=45.00 E-value=11 Score=27.49 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=22.2
Q ss_pred EeEeCHHHHHHhhCCCCeEEEcCCC
Q 032133 55 QCTVSEETSEKFKGLPGVLWVLPDS 79 (146)
Q Consensus 55 AA~LTeeeAekLs~lPGVVSVfPd~ 79 (146)
...||++.+++|+++|||..|-|..
T Consensus 32 ~~~lt~~d~~~l~~~p~V~~v~~~~ 56 (226)
T 3ftj_A 32 IQNLKISDANTLSKQSYIQSVTPNT 56 (226)
T ss_dssp SCCCBHHHHHHHHTSTTEEEEEEEE
T ss_pred cCCCCHHHHHHHhcCCCceEEEEEE
Confidence 4679999999999999999998854
No 11
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=26.92 E-value=37 Score=23.62 Aligned_cols=16 Identities=38% Similarity=0.383 Sum_probs=13.4
Q ss_pred HHHHhhCCCCeEEEcC
Q 032133 62 TSEKFKGLPGVLWVLP 77 (146)
Q Consensus 62 eAekLs~lPGVVSVfP 77 (146)
..++|.++|||+++-.
T Consensus 59 ~i~~I~~i~GVlst~l 74 (95)
T 2jsx_A 59 TIESVRNVEGVLAVSL 74 (95)
T ss_dssp HHHHHTTSTTEEEEEE
T ss_pred HHHHHhcCCCccEEeE
Confidence 4679999999999854
No 12
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=24.58 E-value=51 Score=20.50 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.2
Q ss_pred HHHHHHhhCCCCeEEEcC
Q 032133 60 EETSEKFKGLPGVLWVLP 77 (146)
Q Consensus 60 eeeAekLs~lPGVVSVfP 77 (146)
++-+++|+++|+|+++.-
T Consensus 16 ~~~~~~l~~~peV~~~~~ 33 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHV 33 (83)
T ss_dssp HHHHHHHTTCTTEEEEEE
T ss_pred HHHHHHHhCCCCeEEEEE
Confidence 567889999999999853
No 13
>2jna_A Putative secreted protein; GFT-homodimer, PSI-2, alpha+beta, putative secreted Pro structural genomics, protein structure initiative; NMR {Salmonella typhimurium} SCOP: d.230.6.1
Probab=20.83 E-value=21 Score=25.72 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=20.4
Q ss_pred cceeeeEe-EeCHHHHH--HhhCCCCeEEEcC
Q 032133 49 TTYTGFQC-TVSEETSE--KFKGLPGVLWVLP 77 (146)
Q Consensus 49 ~sfnGFAA-~LTeeeAe--kLs~lPGVVSVfP 77 (146)
-+|+.||| .|+.+|+. .|..+ |+|+|--
T Consensus 15 ~Sf~a~AA~eI~~~qa~~~~lq~i-G~ISvs~ 45 (104)
T 2jna_A 15 ASFSTLAAEQVSKQEISHFKLVKV-GTINVSQ 45 (104)
T ss_dssp CCCCCCSCCCCCHHHHHHHTCEEE-EEEEEEE
T ss_pred HHHHHHHHHHhcHHHhhhccCcee-eEEEEec
Confidence 36788876 57999998 66555 7888764
No 14
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=20.33 E-value=13 Score=29.29 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=26.6
Q ss_pred eEeecceeee----EeEeCHHHHHHhhCCCCeEE
Q 032133 45 AFSTTTYTGF----QCTVSEETSEKFKGLPGVLW 74 (146)
Q Consensus 45 ySY~~sfnGF----AA~LTeeeAekLs~lPGVVS 74 (146)
-.|..+|.|| .|.++|++.+.|..-||++.
T Consensus 54 e~fr~AF~~Fd~~~VA~~~e~~ve~Ll~d~~IIR 87 (183)
T 2ofk_A 54 ENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIR 87 (183)
T ss_dssp HHHHHHTGGGCHHHHHTCCHHHHHHHTTCTTSCC
T ss_pred HHHHHHHcCCCHHHHcCCCHHHHHHHhcCCcchh
Confidence 4678899999 58999999999999999874
No 15
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=20.17 E-value=50 Score=23.20 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=20.7
Q ss_pred CHHHHHHhhCCCCeEEEcCCCccccCCc
Q 032133 59 SEETSEKFKGLPGVLWVLPDSYIDVKNK 86 (146)
Q Consensus 59 TeeeAekLs~lPGVVSVfPd~~~~L~~k 86 (146)
....|++|=++|||.+||=....=-.+|
T Consensus 38 ~SPLA~~LF~i~gVk~Vf~g~dFITVtK 65 (94)
T 2k1h_A 38 QPEFINRLFEIEGVKSIFYVLDFISIDK 65 (94)
T ss_dssp SCHHHHHHHTSTTEEEEEEETTEEEEEE
T ss_pred CCHHHHHhhCCCCeeEEEEeCCEEEEec
Confidence 4568999999999999996554433333
Done!