BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032134
MTAVSNSLVLPKNPRVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFK
VHASNSEGGRANSAGFFVGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKF
IYDEEKALEVSHYFDILSIFLGLIKA

High Scoring Gene Products

Symbol, full name Information P value
AT1G42960 protein from Arabidopsis thaliana 4.1e-17

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032134
        (146 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2009859 - symbol:AT1G42960 "AT1G42960" species...   210  4.1e-17   1


>TAIR|locus:2009859 [details] [associations]
            symbol:AT1G42960 "AT1G42960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009706 "chloroplast inner membrane"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009536 "plastid"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0019344
            "cysteine biosynthetic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0009706 GO:GO:0009535
            EMBL:AC068324 EMBL:AF370328 EMBL:AY063118 IPI:IPI00517801
            PIR:B96497 RefSeq:NP_564482.1 UniGene:At.20488 STRING:Q9C7S3
            PaxDb:Q9C7S3 PRIDE:Q9C7S3 EnsemblPlants:AT1G42960.1 GeneID:840894
            KEGG:ath:AT1G42960 TAIR:At1g42960 eggNOG:NOG14671
            HOGENOM:HOG000005891 InParanoid:Q9C7S3 OMA:LHISAPR PhylomeDB:Q9C7S3
            ProtClustDB:CLSN2722005 ArrayExpress:Q9C7S3 Genevestigator:Q9C7S3
            Uniprot:Q9C7S3
        Length = 168

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 56/127 (44%), Positives = 71/127 (55%)

Query:     5 SNSLVLPKNP-RVELSSGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSR-RRPFKVH 62
             S SL LPKN  ++  SSG  L P   C+      ++SF  NH  K+ +S+ R +R   + 
Sbjct:     6 STSLSLPKNSHQLHPSSGFSLNPNARCV------SVSFGLNHSNKLHISAPRTKRILTIQ 59

Query:    63 ASNSEGGRANSAXXXXXXXXXXXXXXXXXXCVYAPQISKALAGAAADRKDLMRKLPKFIY 122
             ++  +   + S                   CVYAPQISKA+AGA  DRKDLMRKLPKFIY
Sbjct:    60 SAYRDDDGSGSTGLFVGGFILGGLIVGALGCVYAPQISKAIAGA--DRKDLMRKLPKFIY 117

Query:   123 DEEKALE 129
             DEEKALE
Sbjct:   118 DEEKALE 124


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      146       128   0.00091  102 3  11 22  0.39    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  124 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.91u 0.12s 11.03t   Elapsed:  00:00:01
  Total cpu time:  10.91u 0.12s 11.03t   Elapsed:  00:00:01
  Start:  Fri May 10 17:12:37 2013   End:  Fri May 10 17:12:38 2013

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