Query 032134
Match_columns 146
No_of_seqs 41 out of 43
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 16:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q4g_A Prostaglandin G/H synth 35.6 13 0.00046 32.7 1.5 30 74-103 470-503 (553)
2 2dyj_A Ribosome-binding factor 17.8 39 0.0013 23.2 0.9 27 96-129 66-94 (95)
3 2j7a_C Cytochrome C quinol deh 17.3 52 0.0018 23.7 1.5 12 81-92 15-26 (159)
4 1pa4_A Probable ribosome-bindi 15.0 45 0.0015 23.5 0.6 32 96-134 70-103 (116)
5 2lbg_A Major prion protein; co 14.6 42 0.0014 19.7 0.3 17 79-95 4-20 (27)
6 2kzf_A RBFA, ribosome-binding 13.4 42 0.0014 23.3 0.1 28 96-130 74-103 (106)
7 2e7g_A Putative ribosome-bindi 13.1 47 0.0016 23.8 0.3 32 96-134 82-115 (129)
8 1bts_A BAND 3 anion transport 12.5 59 0.002 18.3 0.5 17 82-98 7-23 (26)
9 4efa_E V-type proton ATPase su 11.8 71 0.0024 24.3 0.9 13 96-110 215-227 (233)
10 1jos_A RBFA, ribosome-binding 11.7 39 0.0013 24.3 -0.6 31 96-133 75-107 (128)
No 1
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=35.61 E-value=13 Score=32.74 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=19.0
Q ss_pred CCceeehhh---hhhhhhh-hhhhhhhhhhHHHH
Q 032134 74 AGFFVGGFV---LGGIIVG-TLGCVYAPQISKAL 103 (146)
Q Consensus 74 gg~Fv~GFl---LGGaVfG-tLGyvfAPQIskaL 103 (146)
---+|||++ +-|.+|| |+.||+|+|-.|.|
T Consensus 470 iDL~vG~laE~~~~G~~~Gpt~~~ii~~~~~~~l 503 (553)
T 1q4g_A 470 LEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGL 503 (553)
T ss_dssp CCHHHHHHHSCBCTTCSSBHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCCccHHHHHHHHHHHHHHH
Confidence 345677765 4455555 78899999544444
No 2
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=17.79 E-value=39 Score=23.16 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=15.9
Q ss_pred hhhhHHHHhchhhchhHHHhhCCc--ccchhhHHhh
Q 032134 96 APQISKALAGAAADRKDLMRKLPK--FIYDEEKALE 129 (146)
Q Consensus 96 APQIskaL~~~~~d~~~l~rk~pk--~~yDEek~LE 129 (146)
++.|++.|.... . +|..|. |.||+ .+|
T Consensus 66 ~g~iR~~l~~~l--~---lr~~P~L~F~~D~--s~e 94 (95)
T 2dyj_A 66 ERRLVAALARRV--R---MRRLPRLEFLPWR--ASP 94 (95)
T ss_dssp HHHHHHHHHTTS--C---CSSCCEEEEEEGG--GCC
T ss_pred HHHHHHHHHhhc--C---CccCCeEEEEEcC--CCC
Confidence 556666665521 1 456675 78888 554
No 3
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=17.26 E-value=52 Score=23.70 Aligned_cols=12 Identities=42% Similarity=0.886 Sum_probs=6.3
Q ss_pred hhhhhhhhhhhh
Q 032134 81 FVLGGIIVGTLG 92 (146)
Q Consensus 81 FlLGGaVfGtLG 92 (146)
++|+|+|+|.+.
T Consensus 15 ~~~~g~~~g~~~ 26 (159)
T 2j7a_C 15 LVLGGATLGVVA 26 (159)
T ss_dssp CSTTTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555544
No 4
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=15.04 E-value=45 Score=23.51 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=17.8
Q ss_pred hhhhHHHHhchhhchhHHHhhCCc--ccchhhHHhhhhhcc
Q 032134 96 APQISKALAGAAADRKDLMRKLPK--FIYDEEKALEVSHYF 134 (146)
Q Consensus 96 APQIskaL~~~~~d~~~l~rk~pk--~~yDEek~LEkTR~~ 134 (146)
++.|++.|.... . +|..|. |.||+ .+|...+.
T Consensus 70 ~g~iR~~l~~~l--~---lr~~PeL~F~~D~--s~e~~~~i 103 (116)
T 1pa4_A 70 KGVFSRVLAHNL--Y---LAKAVQIHFVKDK--AIDNAMRI 103 (116)
T ss_dssp HHHHHHHHHTTC--C---CGGGCCCEECSSS--TTSSCC--
T ss_pred HHHHHHHHHhhc--C---CccCCeEEEEECC--cHHHHHHH
Confidence 456666666522 1 456665 78887 56654443
No 5
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=14.63 E-value=42 Score=19.65 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=10.2
Q ss_pred ehhhhhhhhhhhhhhhh
Q 032134 79 GGFVLGGIIVGTLGCVY 95 (146)
Q Consensus 79 ~GFlLGGaVfGtLGyvf 95 (146)
.|-.-.|+|+|.||-.|
T Consensus 4 ~ga~AAGaVvGglGgy~ 20 (27)
T 2lbg_A 4 AGAAAAGAVVGGLGGYM 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHH
Confidence 34445677788776444
No 6
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=13.40 E-value=42 Score=23.30 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=16.2
Q ss_pred hhhhHHHHhchhhchhHHHhhCCc--ccchhhHHhhh
Q 032134 96 APQISKALAGAAADRKDLMRKLPK--FIYDEEKALEV 130 (146)
Q Consensus 96 APQIskaL~~~~~d~~~l~rk~pk--~~yDEek~LEk 130 (146)
++.|++.|.... . +|..|. |.||+ .+|.
T Consensus 74 ~g~iR~~l~~~l--~---lr~~P~L~F~~D~--s~e~ 103 (106)
T 2kzf_A 74 KGFFRTFIAKNL--R---LYVAPEIRFYEDK--GIEA 103 (106)
T ss_dssp HHHHHHHHHHHS--C---SSSCCEEEEESSC--CCTT
T ss_pred HHHHHHHHHhhc--C---CccCCeEEEEECC--chhh
Confidence 455666555521 1 456665 78888 5664
No 7
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=13.10 E-value=47 Score=23.82 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=18.6
Q ss_pred hhhhHHHHhchhhchhHHHhhCCc--ccchhhHHhhhhhcc
Q 032134 96 APQISKALAGAAADRKDLMRKLPK--FIYDEEKALEVSHYF 134 (146)
Q Consensus 96 APQIskaL~~~~~d~~~l~rk~pk--~~yDEek~LEkTR~~ 134 (146)
++.|++.|... = . +|..|. |.||+ .+|...+.
T Consensus 82 ~g~iR~~l~~~--l--~-lr~~PeL~F~~D~--s~e~~~~i 115 (129)
T 2e7g_A 82 AAHMRHLLMSQ--Q--T-LRNVPPIVFVQDK--GNAALAEL 115 (129)
T ss_dssp HHHHHHHHHTC--T--T-CSCCCCEEEEETT--CCCCCCCC
T ss_pred HHHHHHHHHhh--c--C-CccCCeEEEEEcC--CHHHHHHH
Confidence 35666666551 1 1 456675 88898 56655443
No 8
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=12.48 E-value=59 Score=18.34 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=11.0
Q ss_pred hhhhhhhhhhhhhhhhh
Q 032134 82 VLGGIIVGTLGCVYAPQ 98 (146)
Q Consensus 82 lLGGaVfGtLGyvfAPQ 98 (146)
+++.++.|.+-++|+=|
T Consensus 7 i~s~ai~Gi~f~lf~gQ 23 (26)
T 1bts_A 7 LISTAVQGILFALLGAX 23 (26)
T ss_dssp HHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 56677777777777655
No 9
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=11.77 E-value=71 Score=24.32 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=10.5
Q ss_pred hhhhHHHHhchhhch
Q 032134 96 APQISKALAGAAADR 110 (146)
Q Consensus 96 APQIskaL~~~~~d~ 110 (146)
-|+|++.|-| ++.
T Consensus 215 lp~Ir~~LFG--~~~ 227 (233)
T 4efa_E 215 LPAIRLELYG--PSK 227 (233)
T ss_dssp HHHHHHHHSC--CC-
T ss_pred HHHHHHHHCC--cCC
Confidence 5999999999 554
No 10
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=11.69 E-value=39 Score=24.33 Aligned_cols=31 Identities=35% Similarity=0.584 Sum_probs=16.8
Q ss_pred hhhhHHHHhchhhchhHHHhhCCc--ccchhhHHhhhhhc
Q 032134 96 APQISKALAGAAADRKDLMRKLPK--FIYDEEKALEVSHY 133 (146)
Q Consensus 96 APQIskaL~~~~~d~~~l~rk~pk--~~yDEek~LEkTR~ 133 (146)
++.|++.|.... . +|..|. |.||+ .+|...+
T Consensus 75 ~g~iR~~l~~~l----~-lr~~PeL~F~~D~--s~e~~~~ 107 (128)
T 1jos_A 75 SPYIRSLLGKAM----R-LRIVPEIRFIYDQ--SLVEGMR 107 (128)
T ss_dssp HHHHHHHHHHHH----C-CSSCCEEEEEECC--CCCCCC-
T ss_pred HHHHHHHHHhhc----C-CCcCCeEEEEEcC--cHHHHHH
Confidence 455666655521 1 456675 78887 4554433
Done!