Query 032134
Match_columns 146
No_of_seqs 41 out of 43
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 16:13:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032134.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032134hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kkga_ d.52.7.1 (A:) Ribosome 44.1 2.5 0.00018 28.1 0.2 30 95-131 75-106 (108)
2 d1fuia2 c.85.1.1 (A:1-355) L-f 42.2 4.1 0.0003 33.0 1.3 53 82-134 179-237 (355)
3 d1josa_ d.52.7.1 (A:) Ribosome 31.0 4.3 0.00031 26.2 -0.3 29 95-130 68-98 (100)
4 d2dyja1 d.52.7.1 (A:4-94) Ribo 21.7 15 0.0011 23.2 1.2 25 95-124 62-88 (91)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 14.1 38 0.0028 20.5 1.7 22 84-105 9-30 (158)
6 d1cvua1 a.93.1.2 (A:74-583) Pr 13.4 49 0.0036 27.0 2.6 30 76-105 431-464 (511)
7 d1pa4a_ d.52.7.1 (A:) Ribosome 13.2 16 0.0012 23.5 -0.4 28 96-130 65-94 (96)
8 d1ciya3 f.1.3.1 (A:33-255) del 12.6 6.3 0.00046 28.8 -3.0 20 85-105 23-42 (223)
9 d2ajra1 c.72.1.1 (A:1-319) Put 12.5 12 0.00085 27.3 -1.5 14 71-84 256-270 (319)
10 d6rxna_ g.41.5.1 (A:) Rubredox 11.8 27 0.002 20.5 0.3 8 120-127 11-18 (45)
No 1
>d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia coli [TaxId: 562]}
Probab=44.11 E-value=2.5 Score=28.05 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=20.0
Q ss_pred hhhhhHHHHhchhhchhHHHhhCCc--ccchhhHHhhhh
Q 032134 95 YAPQISKALAGAAADRKDLMRKLPK--FIYDEEKALEVS 131 (146)
Q Consensus 95 fAPQIskaL~~~~~d~~~l~rk~pk--~~yDEek~LEkT 131 (146)
-+++|++.|..-+ . +|+.|+ |+||| .+|+.
T Consensus 75 ~~~~ir~~l~~~l--~---lr~~P~L~F~~D~--s~e~a 106 (108)
T d1kkga_ 75 ASGFIRSLLGKAM--R---LRIVPELTFFYDN--SLVEG 106 (108)
T ss_dssp THHHHHHHHHHHT--T---CSCCCEEEEEECC--TTSSS
T ss_pred HHHHHHHHHHhhC--C---CeECCEEEEEecC--chhhh
Confidence 4667777776622 1 466776 89998 67764
No 2
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and second domains {Escherichia coli [TaxId: 562]}
Probab=42.17 E-value=4.1 Score=32.99 Aligned_cols=53 Identities=28% Similarity=0.446 Sum_probs=41.6
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHhchh---hchhHHHhhCCcccchhh---HHhhhhhcc
Q 032134 82 VLGGIIVGTLGCVYAPQISKALAGAA---ADRKDLMRKLPKFIYDEE---KALEVSHYF 134 (146)
Q Consensus 82 lLGGaVfGtLGyvfAPQIskaL~~~~---~d~~~l~rk~pk~~yDEe---k~LEkTR~~ 134 (146)
++|+.-.|..++.+-|+.=+..+|.. -|..+|.|++.+-+|||| +++|.++++
T Consensus 179 ~iG~~~mGm~~~~~d~~~l~~~fGi~ve~iDm~El~rr~e~~i~D~eEv~~Al~w~k~~ 237 (355)
T d1fuia2 179 SLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKN 237 (355)
T ss_dssp EESSCSTTCGGGSCCHHHHHHHHCCEEEEECTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred EECCccCCcccccCCHHHHHHHhCCceEEEcHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 57888889999999999988888754 688889888888888875 566655543
No 3
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=31.04 E-value=4.3 Score=26.24 Aligned_cols=29 Identities=41% Similarity=0.687 Sum_probs=18.4
Q ss_pred hhhhhHHHHhchhhchhHHHhhCCc--ccchhhHHhhh
Q 032134 95 YAPQISKALAGAAADRKDLMRKLPK--FIYDEEKALEV 130 (146)
Q Consensus 95 fAPQIskaL~~~~~d~~~l~rk~pk--~~yDEek~LEk 130 (146)
.++.|++.|.... . +|..|+ |+||+ .+|+
T Consensus 68 ~~~~ir~~la~~l--~---~r~~P~L~F~~D~--s~e~ 98 (100)
T d1josa_ 68 ASPYIRSLLGKAM--R---LRIVPEIRFIYDQ--SLVE 98 (100)
T ss_dssp THHHHHHHHHHHH--C---CSSCCEEEEEECC--CCCC
T ss_pred HHHHHHHHHHHhc--C---CccCCeEEEEecC--chhc
Confidence 3567777776632 1 456776 88898 5554
No 4
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]}
Probab=21.66 E-value=15 Score=23.25 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=15.0
Q ss_pred hhhhhHHHHhchhhchhHHHhhCCc--ccchh
Q 032134 95 YAPQISKALAGAAADRKDLMRKLPK--FIYDE 124 (146)
Q Consensus 95 fAPQIskaL~~~~~d~~~l~rk~pk--~~yDE 124 (146)
.+++|++.|..-. . ||+.|+ |+|||
T Consensus 62 ~~~~ir~~l~~~l--~---~r~~P~L~F~~D~ 88 (91)
T d2dyja1 62 AERRLVAALARRV--R---MRRLPRLEFLPWR 88 (91)
T ss_dssp THHHHHHHHHTTS--C---CSSCCEEEEEEGG
T ss_pred HHHHHHHHHHhhC--C---CccCCEEEEEeCC
Confidence 3456666666522 1 456675 78887
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=14.14 E-value=38 Score=20.51 Aligned_cols=22 Identities=32% Similarity=0.231 Sum_probs=19.0
Q ss_pred hhhhhhhhhhhhhhhhHHHHhc
Q 032134 84 GGIIVGTLGCVYAPQISKALAG 105 (146)
Q Consensus 84 GGaVfGtLGyvfAPQIskaL~~ 105 (146)
==+|+|.|.-+-.|.+.+....
T Consensus 9 ViaIIgILaaia~P~~~~~~~~ 30 (158)
T d2pila_ 9 VIAIVGILAAVALPAYQDYTAR 30 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999988876
No 6
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.41 E-value=49 Score=26.95 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=21.5
Q ss_pred ceeehhh---hhhhhhh-hhhhhhhhhhHHHHhc
Q 032134 76 FFVGGFV---LGGIIVG-TLGCVYAPQISKALAG 105 (146)
Q Consensus 76 ~Fv~GFl---LGGaVfG-tLGyvfAPQIskaL~~ 105 (146)
-+|||++ +-|.++| |+.|+.++|..|...+
T Consensus 431 L~vG~laE~~~~g~~~GpT~~~ii~~qf~r~r~g 464 (511)
T d1cvua1 431 LYPALLVEKPRPDAIFGETMVELGAPFSLKGLMG 464 (511)
T ss_dssp HHHHHHHSCCSTTCSSCHHHHHHHHHHHHHHHHT
T ss_pred hhhchhccCcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3455544 2344555 8999999999998888
No 7
>d1pa4a_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=13.22 E-value=16 Score=23.52 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=16.5
Q ss_pred hhhhHHHHhchhhchhHHHhhCCc--ccchhhHHhhh
Q 032134 96 APQISKALAGAAADRKDLMRKLPK--FIYDEEKALEV 130 (146)
Q Consensus 96 APQIskaL~~~~~d~~~l~rk~pk--~~yDEek~LEk 130 (146)
+..|++.|..-+ . +|+.|+ |+||+ .+|.
T Consensus 65 ~g~ir~~l~~~l--~---lr~~P~L~F~~D~--s~e~ 94 (96)
T d1pa4a_ 65 KGVFSRVLAHNL--Y---LAKAVQIHFVKDK--AIDN 94 (96)
T ss_dssp HHHHHHHHHTTC--C---CGGGCCCEECSSS--TTSS
T ss_pred HHHHHHHHHHhc--C---CccCCeEEEEeCC--chhc
Confidence 455666665521 1 456675 88998 5654
No 8
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=12.60 E-value=6.3 Score=28.76 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=10.5
Q ss_pred hhhhhhhhhhhhhhhHHHHhc
Q 032134 85 GIIVGTLGCVYAPQISKALAG 105 (146)
Q Consensus 85 GaVfGtLGyvfAPQIskaL~~ 105 (146)
|.++|.++.++ |...+..|.
T Consensus 23 g~~~~li~~lw-p~~~~~~W~ 42 (223)
T d1ciya3 23 GFVLGLVDIIW-GIFGPSQWD 42 (223)
T ss_dssp HHHHHHHHHTT-SCCSHHHHH
T ss_pred HHHHHHHHHHc-CCCCccHHH
Confidence 45555666665 544444444
No 9
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]}
Probab=12.54 E-value=12 Score=27.26 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=9.9
Q ss_pred CCCCCc-eeehhhhh
Q 032134 71 ANSAGF-FVGGFVLG 84 (146)
Q Consensus 71 ~~~gg~-Fv~GFlLG 84 (146)
.-|+|| |+|||+-|
T Consensus 256 t~GAGDaf~ag~i~~ 270 (319)
T d2ajra1 256 LLGAGDAYVAGMVYY 270 (319)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 346676 99998755
No 10
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=11.78 E-value=27 Score=20.47 Aligned_cols=8 Identities=25% Similarity=0.617 Sum_probs=6.1
Q ss_pred ccchhhHH
Q 032134 120 FIYDEEKA 127 (146)
Q Consensus 120 ~~yDEek~ 127 (146)
|+|||+++
T Consensus 11 yiYd~~~G 18 (45)
T d6rxna_ 11 YEYDPAEH 18 (45)
T ss_dssp CEECGGGG
T ss_pred eEECcccC
Confidence 78998654
Done!