BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032135
         (146 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
           A-ketoglutarate
 pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
          Length = 451

 Score = 28.1 bits (61), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 45  RTNAYNVPKLEPFSRTKLERAVKEPSLIE 73
           R   YNV  LE FS T+LE  V+ PS ++
Sbjct: 137 REKLYNVISLE-FSHTRLENMVQRPSTVD 164


>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
           Dehydrogenase From Porcine Heart Mitochondria
 pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
           Dehydrogenase From Porcine Heart Mitochondria
          Length = 413

 Score = 26.9 bits (58), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 20/26 (76%), Gaps = 1/26 (3%)

Query: 119 QSGGV-KSLIGCLHGISSIRKKKHWV 143
           +SG + K L GC+HG+S+++  +H++
Sbjct: 368 ESGAMTKDLAGCIHGLSNVKLNEHFL 393


>pdb|3HX6|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pily1
           C-Terminal Domain
 pdb|3HX6|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pily1
           C-Terminal Domain
          Length = 570

 Score = 25.8 bits (55), Expect = 9.5,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 53  KLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWR 96
           KLE   RT +   +  P L + + + +ADY     GD   + WR
Sbjct: 238 KLEVTGRTGVPNGLSSPRLADNNSDGVADY--AYAGDLQGNLWR 279


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,332,690
Number of Sequences: 62578
Number of extensions: 90592
Number of successful extensions: 169
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 3
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)