BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032135
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28796|TNAA_PROVU Tryptophanase OS=Proteus vulgaris GN=tnaA PE=1 SV=1
Length = 467
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 17/75 (22%)
Query: 51 VPKLEPFSRTKLERAVKE--------PS-------LIEKSENDLAD--YCSTLEGDDSYS 93
V K+ SR + E A+KE PS L + N ++D + + + GD++Y+
Sbjct: 14 VEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYA 73
Query: 94 CWRAYFELKDLEKEL 108
R Y++LKD KEL
Sbjct: 74 GSRNYYDLKDKAKEL 88
>sp|A8FX83|HTPG_SHESH Chaperone protein HtpG OS=Shewanella sediminis (strain HAW-EB3)
GN=htpG PE=3 SV=1
Length = 638
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 42 SSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFEL 101
+ S A N P LE + +E + + E N L D+ +G +S R EL
Sbjct: 445 ADSHEAAANSPHLELLRKKGIEVVLMSERIDEWLINHLTDF----DGKQLHSVTRGDLEL 500
Query: 102 KDLEKELPKEDIEKLILQSGGV 123
DLE KE EKL +S G+
Sbjct: 501 GDLEDAGEKEAQEKLETESEGL 522
>sp|Q640I9|KDM2B_XENLA Lysine-specific demethylase 2B OS=Xenopus laevis GN=kdm2b PE=2 SV=1
Length = 1259
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 45 RTNAYNVPKLEPFSRTKLERAVKEPSLIE 73
R YNV LE FS TKLER VK P++++
Sbjct: 136 REKLYNVISLE-FSHTKLERVVKRPTVVD 163
>sp|A3QF50|HTPG_SHELP Chaperone protein HtpG OS=Shewanella loihica (strain ATCC BAA-1088
/ PV-4) GN=htpG PE=3 SV=1
Length = 639
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 42 SSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFEL 101
+ S A N P LE + +E + + E+ + L ++ S +G +S R EL
Sbjct: 446 ADSHEAAANSPHLELLRKKGIEVLL----MSERIDEWLINHLSEFDGKQLHSVTRGDLEL 501
Query: 102 KDLEKELPKEDIEKLILQSGG----VKSLIG 128
+LE KE EKL +S G VK ++G
Sbjct: 502 GELEDAAEKEAQEKLETESEGLVKRVKEVLG 532
>sp|Q6P1G2|KDM2B_MOUSE Lysine-specific demethylase 2B OS=Mus musculus GN=Kdm2b PE=1 SV=1
Length = 1309
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 43 SSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTL 86
+ R YNV LE FS TKLE VK P+++ DL D+ +
Sbjct: 134 AQRDKLYNVISLE-FSHTKLEHLVKRPTVV-----DLVDWVDNM 171
>sp|Q8NHM5|KDM2B_HUMAN Lysine-specific demethylase 2B OS=Homo sapiens GN=KDM2B PE=1 SV=1
Length = 1336
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 43 SSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTL 86
+ R YNV LE FS TKLE VK P+++ DL D+ +
Sbjct: 165 AQRDKLYNVISLE-FSHTKLEHLVKRPTVV-----DLVDWVDNM 202
>sp|Q662L1|SECA_BORGA Protein translocase subunit SecA OS=Borrelia garinii (strain PBi)
GN=secA PE=3 SV=1
Length = 899
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 64 RAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQSG 121
+AV EP++ KS+ DL DY TL + W +D KE K E L+SG
Sbjct: 3 KAVLEPAIGSKSKRDLKDYLPTLRNINKLERWALLLADEDFSKETQKLKYE---LKSG 57
>sp|Q9CXJ4|ABCB8_MOUSE ATP-binding cassette sub-family B member 8, mitochondrial OS=Mus
musculus GN=Abcb8 PE=2 SV=1
Length = 717
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 91 SYSCWRAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCL 130
SY C + LKD +LP I L+ QSGG K+ + L
Sbjct: 462 SYPCRPGFNVLKDFTLKLPSGKIVALVGQSGGGKTTVASL 501
>sp|Q4V7H1|STIL_XENLA SCL-interrupting locus protein homolog OS=Xenopus laevis GN=stil
PE=2 SV=2
Length = 1281
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 6 VAGSCSVPLRLESKDNLNAGACFSDTT---RSASVACCSSSSRTNAYNVPKLEPFSRTKL 62
V GSC E + N+N A TT RS S + SS+ N +NV SR
Sbjct: 562 VKGSC------EQEQNINGSAQPQGTTPLMRSGSYSRQVSSNFPN-HNV-TFPLHSRHVA 613
Query: 63 ERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLI 117
E A P+L + ++ C +L S +CW A L E P E E ++
Sbjct: 614 EVAKPSPNLAPFHQTNVCTSCHSLVSCHSKNCWPAMGHLTYHTMENPPETCESVM 668
>sp|A8H2R4|HTPG_SHEPA Chaperone protein HtpG OS=Shewanella pealeana (strain ATCC 700345 /
ANG-SQ1) GN=htpG PE=3 SV=1
Length = 638
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 42 SSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFEL 101
+ S A N P LE + +E + + E+ + L ++ + +G +S R EL
Sbjct: 445 ADSHEAAANSPHLELLRKKGIEVLL----MSERIDEWLINHLTEFDGKKLHSVTRGDLEL 500
Query: 102 KDLEKELPKEDIEKLILQSGGV 123
+LE + KE EKL +S G+
Sbjct: 501 GELEDDDEKEAQEKLQTESEGL 522
>sp|Q9V496|APLP_DROME Apolipophorins OS=Drosophila melanogaster GN=Rfabg PE=1 SV=2
Length = 3351
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 35 ASVACCSSSSRTNAYNVPKLEPFSRTKLERAVKEPSL 71
A+++ C+S+ R+N V L FS+ K E ++ SL
Sbjct: 484 AALSECASTGRSNRIRVAALHAFSKVKCEETLQSKSL 520
>sp|P19540|FA9_CANFA Coagulation factor IX OS=Canis familiaris GN=F9 PE=1 SV=1
Length = 452
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 26/91 (28%)
Query: 44 SRTNAYNVPKLEPFSRTKLERAVKEP--------SLIEKSENDLADYCSTLEGD------ 89
SR YN KLE F R LER E + E +E + ++GD
Sbjct: 35 SRPKRYNSGKLEEFVRGNLERECIEEKCSFEEAREVFENTEKTTEFWKQYVDGDQCESNP 94
Query: 90 -----------DSYSCW-RAYFELKDLEKEL 108
+SY CW RA FE K+ E ++
Sbjct: 95 CLNDGVCKDDINSYECWCRAGFEGKNCELDV 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,826,430
Number of Sequences: 539616
Number of extensions: 2050274
Number of successful extensions: 4365
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4356
Number of HSP's gapped (non-prelim): 30
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)