Query 032135
Match_columns 146
No_of_seqs 20 out of 22
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 10:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00615 RGS: Regulator of G p 67.3 14 0.0003 24.1 4.3 39 62-104 2-40 (118)
2 PF08095 Toxin_25: Hefutoxin f 64.5 3.5 7.6E-05 24.1 0.9 10 90-99 3-13 (22)
3 PF12174 RST: RCD1-SRO-TAF4 (R 41.1 24 0.00053 24.6 2.2 34 96-131 31-65 (70)
4 cd08796 Death_IRAK-M Death dom 36.7 59 0.0013 23.8 3.7 53 79-131 11-77 (89)
5 TIGR01425 SRP54_euk signal rec 36.2 49 0.0011 30.0 3.8 74 48-134 275-356 (429)
6 PF00514 Arm: Armadillo/beta-c 34.8 24 0.00052 20.6 1.2 21 112-132 3-23 (41)
7 PF03960 ArsC: ArsC family; I 32.4 20 0.00043 25.2 0.6 22 108-129 33-55 (110)
8 PF00533 BRCT: BRCA1 C Terminu 31.9 28 0.0006 21.5 1.2 16 108-123 19-34 (78)
9 cd04401 RhoGAP_fMSB1 RhoGAP_fM 31.3 79 0.0017 25.9 4.0 58 85-143 83-149 (198)
10 PF05184 SapB_1: Saposin-like 30.8 66 0.0014 18.5 2.6 28 60-87 12-39 (39)
11 cd00027 BRCT Breast Cancer Sup 30.1 46 0.001 19.1 1.9 16 107-122 12-27 (72)
12 PF10965 DUF2767: Protein of u 29.3 51 0.0011 23.6 2.3 24 96-119 20-43 (69)
13 PF00839 Cys_rich_FGFR: Cystei 28.2 84 0.0018 19.7 3.0 33 67-99 20-54 (58)
14 PF08101 DUF1708: Domain of un 27.6 46 0.001 30.2 2.3 36 84-121 85-122 (420)
15 cd03034 ArsC_ArsC Arsenate Red 27.3 27 0.00059 25.0 0.6 31 99-129 26-58 (112)
16 smart00185 ARM Armadillo/beta- 26.9 46 0.00099 18.3 1.4 19 113-131 4-22 (41)
17 PF08109 Antimicrobial14: Lact 26.9 32 0.00069 21.5 0.8 20 123-142 10-29 (31)
18 smart00315 RGS Regulator of G 25.6 1.4E+02 0.0029 19.8 3.7 41 62-106 2-42 (118)
19 COG4308 LimA Limonene-1,2-epox 25.0 37 0.0008 27.1 1.0 19 92-110 110-128 (130)
20 COG0541 Ffh Signal recognition 24.8 1.8E+02 0.0038 27.3 5.4 71 51-134 278-356 (451)
21 COG1327 Predicted transcriptio 24.5 46 0.001 27.2 1.5 14 53-66 57-70 (156)
22 PF14294 DUF4372: Domain of un 23.3 1E+02 0.0023 21.5 2.9 25 101-125 7-31 (76)
23 cd03035 ArsC_Yffb Arsenate Red 22.7 38 0.00082 24.3 0.6 27 100-127 27-54 (105)
24 smart00292 BRCT breast cancer 22.1 78 0.0017 18.6 1.9 27 108-134 17-47 (80)
25 PRK13523 NADPH dehydrogenase N 22.0 47 0.001 28.5 1.2 28 66-95 309-336 (337)
26 PF10474 DUF2451: Protein of u 21.5 64 0.0014 26.5 1.8 32 108-139 190-223 (234)
27 TIGR00244 transcriptional regu 21.2 62 0.0013 26.0 1.6 13 54-66 58-70 (147)
28 PF08064 UME: UME (NUC010) dom 21.0 1E+02 0.0022 22.2 2.6 26 89-120 72-97 (107)
29 KOG0358 Chaperonin complex com 20.6 60 0.0013 30.7 1.6 23 77-100 429-451 (534)
30 PRK13344 spxA transcriptional 20.2 41 0.00089 25.2 0.4 30 99-128 27-58 (132)
No 1
>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....
Probab=67.26 E-value=14 Score=24.08 Aligned_cols=39 Identities=13% Similarity=0.300 Sum_probs=32.8
Q ss_pred HHHHhcCchhHHhhHhHHhhhhccccCCchhhHHHHHHhhHHh
Q 032135 62 LERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDL 104 (146)
Q Consensus 62 l~r~~~e~~LleKae~~l~DyCstLeGDEs~SCW~AyFE~~dl 104 (146)
++.++.+|.. -..+.+||..-.+.+...||.+.-+++..
T Consensus 2 ~~~il~~~~~----~~~F~~Fl~~~~~~~~l~F~~~v~~~~~~ 40 (118)
T PF00615_consen 2 FEKILEDPEG----LELFKEFLEKENCEENLQFWLEVEEFKSS 40 (118)
T ss_dssp HHHHHHSHHH----HHHHHHHHHHTTTTHHHHHHHHHHHHHTS
T ss_pred HHHHHCChHH----HHHHHHHHhHCCCHHHHHHHHHHHHHHhh
Confidence 5667777764 45788999999999999999999999988
No 2
>PF08095 Toxin_25: Hefutoxin family; InterPro: IPR012630 This family consists of the hefutoxins that are found in the venom of the scorpion Heterometrus fulvipes (Indian black scorpion). These toxins, kappa-hefutoxin1 and kappa-hefutoxin2, exhibit no homology to any known toxins. The hefutoxins are potassium channel toxins [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP9_A.
Probab=64.53 E-value=3.5 Score=24.14 Aligned_cols=10 Identities=50% Similarity=1.228 Sum_probs=6.8
Q ss_pred chh-hHHHHHH
Q 032135 90 DSY-SCWRAYF 99 (146)
Q Consensus 90 Es~-SCW~AyF 99 (146)
-|| +||+|=-
T Consensus 3 ~cyrscwk~g~ 13 (22)
T PF08095_consen 3 GCYRSCWKAGH 13 (22)
T ss_dssp -TTTHHHHHHS
T ss_pred chHHHHHHccC
Confidence 466 9999843
No 3
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=41.06 E-value=24 Score=24.59 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=25.5
Q ss_pred HHHH-hhHHhhhhCcHHHHHHHHHHhcCcchhhhhhh
Q 032135 96 RAYF-ELKDLEKELPKEDIEKLILQSGGVKSLIGCLH 131 (146)
Q Consensus 96 ~AyF-E~~dle~E~Pke~iE~lVrqsGGvksLI~~lh 131 (146)
..+| +|++ ++.+++++-+.+|+..|.+-|+..|.
T Consensus 31 ~~~Y~~~k~--~kIsR~~fvr~lR~IVGD~lL~s~I~ 65 (70)
T PF12174_consen 31 QKHYEEFKK--KKISREEFVRKLRQIVGDQLLRSAIK 65 (70)
T ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434 6664 45999999999999988877776654
No 4
>cd08796 Death_IRAK-M Death domain of Interleukin 1 Receptor Associated Kinase-M. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase M (IRAK-M). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors(TLRs), nuclear factor-kappaB (NF-kB), and mitogen-activated protein kinases (MAPKs). IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK-M, also called IRAK-3, is an inactive kinase present only in macrophages in an inducible manner. It is a negative regulator of TLR signaling and it contributes to the attenuation of NF-kB activation. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=36.66 E-value=59 Score=23.78 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=38.2
Q ss_pred HhhhhccccCCchhhHHHHH--------HhhHHhhhh-----CcHHHHHHHHHHhcC-cchhhhhhh
Q 032135 79 LADYCSTLEGDDSYSCWRAY--------FELKDLEKE-----LPKEDIEKLILQSGG-VKSLIGCLH 131 (146)
Q Consensus 79 l~DyCstLeGDEs~SCW~Ay--------FE~~dle~E-----~Pke~iE~lVrqsGG-vksLI~~lh 131 (146)
+.+-|-.||++++-.+|.-+ .|++++|+. +|-+++=+-=-+.|+ |..|...+.
T Consensus 11 ~~~lc~~LDs~~~~~~W~~lA~~i~~~~~~vr~ie~~~~~G~SPT~eLL~~Wg~~n~TV~eL~~~L~ 77 (89)
T cd08796 11 LGSLCALLDSGVGGLGWRTLAERLSSSWLEVRHIEKYVVQGKSGTRELLWSWAQKNKTVGDLLQVLD 77 (89)
T ss_pred HHHHHHHhcCCCccccHHHHHHHHhccHHHHHHHHHHHHcCCCcHHHHHHHHHccCCCHHHHHHHHH
Confidence 45679999999888999863 356666664 677777777667766 677766554
No 5
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=36.25 E-value=49 Score=29.96 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=42.8
Q ss_pred CCCCCCCCCCchHHH-HHHh---cCchhHHhhHhHHhhhhccccCCchhhHHH----HHHhhHHhhhhCcHHHHHHHHHH
Q 032135 48 AYNVPKLEPFSRTKL-ERAV---KEPSLIEKSENDLADYCSTLEGDDSYSCWR----AYFELKDLEKELPKEDIEKLILQ 119 (146)
Q Consensus 48 ~~~IPKlePFsrskl-~r~~---~e~~LleKae~~l~DyCstLeGDEs~SCW~----AyFE~~dle~E~Pke~iE~lVrq 119 (146)
+..|..+|||+..++ .|++ .=.+|+|||+..+-+. |.-.=++ .-|-|+|+-++ + +.|+.
T Consensus 275 Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~-------~~~~~~~k~~~~~f~l~D~~~q-----~-~~i~k 341 (429)
T TIGR01425 275 GEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDD-------NEKALIEKLKEGTFTLRDMYEQ-----F-QNLLK 341 (429)
T ss_pred CCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHH-------HHHHHHHHHHhCCCCHHHHHHH-----H-HHHHh
Confidence 344788999995555 4544 3468999999866541 1101111 12455554422 1 23444
Q ss_pred hcCcchhhhhhhhhh
Q 032135 120 SGGVKSLIGCLHGIS 134 (146)
Q Consensus 120 sGGvksLI~~lh~ia 134 (146)
.|+.+.+++-|-+..
T Consensus 342 mG~~~~i~~m~Pg~~ 356 (429)
T TIGR01425 342 MGPLGQILSMIPGFS 356 (429)
T ss_pred ccCHHHHHHhCcCcc
Confidence 588888888777654
No 6
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=34.85 E-value=24 Score=20.65 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCcchhhhhhhh
Q 032135 112 DIEKLILQSGGVKSLIGCLHG 132 (146)
Q Consensus 112 ~iE~lVrqsGGvksLI~~lh~ 132 (146)
+--..|.++||+..||..|+.
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~ 23 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKS 23 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS
T ss_pred HHHHHHHHcccHHHHHHHHcC
Confidence 345678899999999998874
No 7
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=32.43 E-value=20 Score=25.25 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=16.8
Q ss_pred CcHHHHHHHHHHhc-Ccchhhhh
Q 032135 108 LPKEDIEKLILQSG-GVKSLIGC 129 (146)
Q Consensus 108 ~Pke~iE~lVrqsG-GvksLI~~ 129 (146)
...+++..++...| |+..||.-
T Consensus 33 ~s~~el~~~l~~~~~~~~~lin~ 55 (110)
T PF03960_consen 33 LSREELRELLSKLGNGPDDLINT 55 (110)
T ss_dssp --HHHHHHHHHHHTSSGGGGB-T
T ss_pred CCHHHHHHHHHHhcccHHHHhcC
Confidence 68999999999998 68888853
No 8
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=31.89 E-value=28 Score=21.54 Aligned_cols=16 Identities=38% Similarity=0.684 Sum_probs=14.1
Q ss_pred CcHHHHHHHHHHhcCc
Q 032135 108 LPKEDIEKLILQSGGV 123 (146)
Q Consensus 108 ~Pke~iE~lVrqsGGv 123 (146)
..+++++++|++.||.
T Consensus 19 ~~~~~l~~~i~~~GG~ 34 (78)
T PF00533_consen 19 DEREELEQLIKKHGGT 34 (78)
T ss_dssp SHHHHHHHHHHHTTEE
T ss_pred CCHHHHHHHHHHcCCE
Confidence 5688999999999994
No 9
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=31.32 E-value=79 Score=25.89 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=40.1
Q ss_pred cccCCchhhHHHHHHhhHHhhhh--CcHHHHHHHHHHhc--C-c----chhhhhhhhhhhhccccCcC
Q 032135 85 TLEGDDSYSCWRAYFELKDLEKE--LPKEDIEKLILQSG--G-V----KSLIGCLHGISSIRKKKHWV 143 (146)
Q Consensus 85 tLeGDEs~SCW~AyFE~~dle~E--~Pke~iE~lVrqsG--G-v----ksLI~~lh~ia~~~K~kk~~ 143 (146)
-|+|..-- .|++|-+|+..|++ .|.+-+..++.+.- . - ..+.+=|-.||.-.|.+|.-
T Consensus 83 rLP~~~v~-~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms 149 (198)
T cd04401 83 RLPGSKVI-WWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMS 149 (198)
T ss_pred HCCCCccC-CHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCc
Confidence 46666653 38999999999876 69999999999983 2 1 34444455566666555543
No 10
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=30.77 E-value=66 Score=18.54 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=22.5
Q ss_pred HHHHHHhcCchhHHhhHhHHhhhhcccc
Q 032135 60 TKLERAVKEPSLIEKSENDLADYCSTLE 87 (146)
Q Consensus 60 skl~r~~~e~~LleKae~~l~DyCstLe 87 (146)
+.++..++++.-.+.-++.|...|+.|.
T Consensus 12 ~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 12 KEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 3567778888888888899999998764
No 11
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=30.12 E-value=46 Score=19.14 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=14.2
Q ss_pred hCcHHHHHHHHHHhcC
Q 032135 107 ELPKEDIEKLILQSGG 122 (146)
Q Consensus 107 E~Pke~iE~lVrqsGG 122 (146)
...++++++++++.||
T Consensus 12 ~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 12 SEERDELKELIEKLGG 27 (72)
T ss_pred CcCHHHHHHHHHHcCC
Confidence 3678999999999999
No 12
>PF10965 DUF2767: Protein of unknown function (DUF2767); InterPro: IPR024493 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=29.30 E-value=51 Score=23.59 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=22.5
Q ss_pred HHHHhhHHhhhhCcHHHHHHHHHH
Q 032135 96 RAYFELKDLEKELPKEDIEKLILQ 119 (146)
Q Consensus 96 ~AyFE~~dle~E~Pke~iE~lVrq 119 (146)
+|||+|-++..|.-++.|.+++|-
T Consensus 20 d~Vl~L~~~G~etk~~~Ia~~LrT 43 (69)
T PF10965_consen 20 DAVLELADLGHETKRIVIADVLRT 43 (69)
T ss_pred HHHHHHHHcCCCchhhHHHHHHHH
Confidence 699999999999999999999976
No 13
>PF00839 Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR001893 This cysteine rich repeat contains four cysteines. It is found in multiple copies in metazoan proteins, single copies occur in some bacterial species and is absent from the fungi. The Golgi apparatus protein 1 (GLG1,Q9Z1E9 from SWISSPROT), which is located in Golgi cisterns of various cell types, can bind fibroblast growth factor and E-selectin. Sixteen cysteine-rich GLG1 repeats form the core of the protein and are located in the lumen. The C-terminal part of GLG1 is composed of a transmembrane region and a short cytoplasmic tail. The Cys-rich GLG1 repeat is a ~60 amino acid module that contains 4 Cys residues, which can form intrachain disulphide bridges []. Homologues of the vertebrate GLG1/Golgi sialoglycoprotein MG-160 (Mg160)/E-selectin ligand 1 (ESL1)/cysteine-rich fibroblast growth factor receptor 1 (CFR1)/latent transforming growth factor-beta complex protein 1 (LTCP-1) have been found in insects and the nematode Caenorhabditis elegans [].; GO: 0016020 membrane
Probab=28.24 E-value=84 Score=19.70 Aligned_cols=33 Identities=21% Similarity=0.537 Sum_probs=24.5
Q ss_pred cCchhHHhhHhHHhhhhccccCCch--hhHHHHHH
Q 032135 67 KEPSLIEKSENDLADYCSTLEGDDS--YSCWRAYF 99 (146)
Q Consensus 67 ~e~~LleKae~~l~DyCstLeGDEs--~SCW~AyF 99 (146)
-+|.|.+.++.+|..+|....+++. .+|=...+
T Consensus 20 ld~~L~~aC~~di~~~C~~~~~~~g~vl~CL~~~~ 54 (58)
T PF00839_consen 20 LDPPLQKACKSDIDKFCSDVEPGHGRVLECLKEHK 54 (58)
T ss_pred cCHHHHHHhHHHHHhhCcCCCCCchHHHHHHHHHH
Confidence 6899999999999999998433333 37765544
No 14
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=27.64 E-value=46 Score=30.23 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=30.4
Q ss_pred ccccCCchhhHHHHHHhhHHhhhh--CcHHHHHHHHHHhc
Q 032135 84 STLEGDDSYSCWRAYFELKDLEKE--LPKEDIEKLILQSG 121 (146)
Q Consensus 84 stLeGDEs~SCW~AyFE~~dle~E--~Pke~iE~lVrqsG 121 (146)
+-|+|+ .-=|++|-+|++.|++ .|.+-+..++-|+-
T Consensus 85 ~RLp~g--vVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l 122 (420)
T PF08101_consen 85 SRLPGG--VVGWDSYEEFKRREREAGYPRDAFLTFLPQCL 122 (420)
T ss_pred HHcCCC--ccccHHHHHHHHHHhhcCCChHHHHHhccccC
Confidence 356676 6679999999999998 79999999998875
No 15
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=27.31 E-value=27 Score=25.00 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=22.9
Q ss_pred HhhHHhhhh-CcHHHHHHHHHHhc-Ccchhhhh
Q 032135 99 FELKDLEKE-LPKEDIEKLILQSG-GVKSLIGC 129 (146)
Q Consensus 99 FE~~dle~E-~Pke~iE~lVrqsG-GvksLI~~ 129 (146)
|++.|+.++ ..+++++.++.++| |+..||.-
T Consensus 26 ~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~ 58 (112)
T cd03034 26 PEIVEYLKTPPTAAELRELLAKLGISPRDLLRT 58 (112)
T ss_pred eEEEecccCCcCHHHHHHHHHHcCCCHHHHHhc
Confidence 555565444 57899999999997 57888754
No 16
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=26.89 E-value=46 Score=18.35 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=15.6
Q ss_pred HHHHHHHhcCcchhhhhhh
Q 032135 113 IEKLILQSGGVKSLIGCLH 131 (146)
Q Consensus 113 iE~lVrqsGGvksLI~~lh 131 (146)
-...+.+.||+..|+..++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~ 22 (41)
T smart00185 4 QKQAVVDAGGLPALVELLK 22 (41)
T ss_pred HHHHHHHCCCHHHHHHHHc
Confidence 4567888999999998876
No 17
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=26.88 E-value=32 Score=21.47 Aligned_cols=20 Identities=45% Similarity=0.516 Sum_probs=16.5
Q ss_pred cchhhhhhhhhhhhccccCc
Q 032135 123 VKSLIGCLHGISSIRKKKHW 142 (146)
Q Consensus 123 vksLI~~lh~ia~~~K~kk~ 142 (146)
...|-|-+|+|+..+|-||-
T Consensus 10 pdflkgylhgisaankhkkg 29 (31)
T PF08109_consen 10 PDFLKGYLHGISAANKHKKG 29 (31)
T ss_pred HHHHHHHHhhhhhhcccccc
Confidence 35677899999999998874
No 18
>smart00315 RGS Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.
Probab=25.58 E-value=1.4e+02 Score=19.76 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHhcCchhHHhhHhHHhhhhccccCCchhhHHHHHHhhHHhhh
Q 032135 62 LERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEK 106 (146)
Q Consensus 62 l~r~~~e~~LleKae~~l~DyCstLeGDEs~SCW~AyFE~~dle~ 106 (146)
|+.++++|... ....+||..-...|...+|++.-+++.+..
T Consensus 2 l~~il~d~~~~----~~F~~fl~~~~~~e~l~F~~~v~~~~~~~~ 42 (118)
T smart00315 2 LESLLSDPIGR----LLFREFLESEFSEENLEFWLAVEEFKKAED 42 (118)
T ss_pred HHHHhcChHHH----HHHHHHHHHhcchHhHHHHHHHHHHHhcCC
Confidence 45566666554 456777777777788999999999988876
No 19
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.04 E-value=37 Score=27.11 Aligned_cols=19 Identities=42% Similarity=0.950 Sum_probs=15.8
Q ss_pred hhHHHHHHhhHHhhhhCcH
Q 032135 92 YSCWRAYFELKDLEKELPK 110 (146)
Q Consensus 92 ~SCW~AyFE~~dle~E~Pk 110 (146)
--=|+-||..++|-+..|.
T Consensus 110 I~~WRDYFDv~~l~k~~~r 128 (130)
T COG4308 110 IVLWRDYFDVNDLFKQTPR 128 (130)
T ss_pred EEeehhhhhHHHHHhhccC
Confidence 3569999999999987764
No 20
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.80 E-value=1.8e+02 Score=27.32 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=43.4
Q ss_pred CCCCCCCc-hHHHHHHh---cCchhHHhhHhHHhhhhccccCCchhhHHHHHHhhHHhh-hhCcHHHHHHHHH---HhcC
Q 032135 51 VPKLEPFS-RTKLERAV---KEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLE-KELPKEDIEKLIL---QSGG 122 (146)
Q Consensus 51 IPKlePFs-rskl~r~~---~e~~LleKae~~l~DyCstLeGDEs~SCW~AyFE~~dle-~E~Pke~iE~lVr---qsGG 122 (146)
|.-||||. ++..+|++ -=-+|+||++..+-. +|.- -=.++|. -+.-++|+-+-++ .-|+
T Consensus 278 i~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~-------e~a~------~~~~kl~~g~FtL~Df~~Ql~~m~kmGp 344 (451)
T COG0541 278 IDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDE-------EEAE------KLAEKLKKGKFTLEDFLEQLEQMKKMGP 344 (451)
T ss_pred cccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhH-------HHHH------HHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 67799999 77888887 447899999876521 0000 0011111 1244444444443 4499
Q ss_pred cchhhhhhhhhh
Q 032135 123 VKSLIGCLHGIS 134 (146)
Q Consensus 123 vksLI~~lh~ia 134 (146)
...|++-|-+.+
T Consensus 345 l~~ll~miPG~~ 356 (451)
T COG0541 345 LSKLLSMIPGMG 356 (451)
T ss_pred HHHHHHhCCCCC
Confidence 999998887765
No 21
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=24.54 E-value=46 Score=27.17 Aligned_cols=14 Identities=50% Similarity=0.914 Sum_probs=12.5
Q ss_pred CCCCCchHHHHHHh
Q 032135 53 KLEPFSRTKLERAV 66 (146)
Q Consensus 53 KlePFsrskl~r~~ 66 (146)
..|||+|.||-+.|
T Consensus 57 ~Re~F~r~Kl~~gl 70 (156)
T COG1327 57 RREPFDREKLRRGL 70 (156)
T ss_pred CcCCCCHHHHHHHH
Confidence 38999999999887
No 22
>PF14294 DUF4372: Domain of unknown function (DUF4372)
Probab=23.27 E-value=1e+02 Score=21.48 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=19.4
Q ss_pred hHHhhhhCcHHHHHHHHHHhcCcch
Q 032135 101 LKDLEKELPKEDIEKLILQSGGVKS 125 (146)
Q Consensus 101 ~~dle~E~Pke~iE~lVrqsGGvks 125 (146)
|..|=+-.|+.+++++|+..+|.++
T Consensus 7 f~Qll~~i~~~~f~~~v~k~~~d~~ 31 (76)
T PF14294_consen 7 FAQLLSFIPRHEFERIVKKYGGDRY 31 (76)
T ss_pred HHHHHHHCCHHHHHHHHHHhCCCCC
Confidence 3445555899999999999988654
No 23
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=22.73 E-value=38 Score=24.28 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=18.8
Q ss_pred hhHHhhhh-CcHHHHHHHHHHhcCcchhh
Q 032135 100 ELKDLEKE-LPKEDIEKLILQSGGVKSLI 127 (146)
Q Consensus 100 E~~dle~E-~Pke~iE~lVrqsGGvksLI 127 (146)
++.++.++ ..+++++.++.+.| +..||
T Consensus 27 ~~~di~~~p~s~~eL~~~l~~~g-~~~li 54 (105)
T cd03035 27 TFHDYRKDGLDAATLERWLAKVG-WETLL 54 (105)
T ss_pred EEEecccCCCCHHHHHHHHHHhC-hHHHH
Confidence 34445444 67899999999887 55555
No 24
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=22.06 E-value=78 Score=18.65 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=18.9
Q ss_pred CcHHHHHHHHHHhcCc--chhh--hhhhhhh
Q 032135 108 LPKEDIEKLILQSGGV--KSLI--GCLHGIS 134 (146)
Q Consensus 108 ~Pke~iE~lVrqsGGv--ksLI--~~lh~ia 134 (146)
..++++++++++.||- ..+= ..=|.++
T Consensus 17 ~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~ 47 (80)
T smart00292 17 NERDELKELIEALGGKVTSSLSSKTTTHVIV 47 (80)
T ss_pred ccHHHHHHHHHHcCCEEecccCccceeEEEE
Confidence 5789999999999994 3333 3445444
No 25
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=22.00 E-value=47 Score=28.45 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=21.3
Q ss_pred hcCchhHHhhHhHHhhhhccccCCchhhHH
Q 032135 66 VKEPSLIEKSENDLADYCSTLEGDDSYSCW 95 (146)
Q Consensus 66 ~~e~~LleKae~~l~DyCstLeGDEs~SCW 95 (146)
+.||.|.+|+.+.+.+.|++ +-+ |..||
T Consensus 309 iadP~~~~k~~~~~~~~~~~-~~~-~~~~~ 336 (337)
T PRK13523 309 LRNPYFPRIAAKELGFEIEA-PKQ-YERAW 336 (337)
T ss_pred HhCccHHHHHHHHcCCCCCC-cch-hhhcc
Confidence 47899999999999988865 111 55787
No 26
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=21.49 E-value=64 Score=26.53 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHh--cCcchhhhhhhhhhhhccc
Q 032135 108 LPKEDIEKLILQS--GGVKSLIGCLHGISSIRKK 139 (146)
Q Consensus 108 ~Pke~iE~lVrqs--GGvksLI~~lh~ia~~~K~ 139 (146)
+|.+|++..+++. =+.+.|++=|+..+...||
T Consensus 190 l~e~e~~~W~~~h~eYs~~ql~~Lv~~~~~~~kk 223 (234)
T PF10474_consen 190 LPEEELEEWIRTHTEYSKKQLVGLVNCAAASKKK 223 (234)
T ss_pred CCHHHHHHHHHhCcccCHHHHHHHHHHHHHhhHH
Confidence 7899999999998 3358888888888887444
No 27
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=21.21 E-value=62 Score=25.99 Aligned_cols=13 Identities=54% Similarity=0.838 Sum_probs=11.8
Q ss_pred CCCCchHHHHHHh
Q 032135 54 LEPFSRTKLERAV 66 (146)
Q Consensus 54 lePFsrskl~r~~ 66 (146)
+|||+|.||-+++
T Consensus 58 re~Fdr~Kl~~gl 70 (147)
T TIGR00244 58 REPFNREKLLRGM 70 (147)
T ss_pred CCCCCHHHHHHHH
Confidence 8999999998876
No 28
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=20.96 E-value=1e+02 Score=22.16 Aligned_cols=26 Identities=31% Similarity=0.773 Sum_probs=17.5
Q ss_pred CchhhHHHHHHhhHHhhhhCcHHHHHHHHHHh
Q 032135 89 DDSYSCWRAYFELKDLEKELPKEDIEKLILQS 120 (146)
Q Consensus 89 DEs~SCW~AyFE~~dle~E~Pke~iE~lVrqs 120 (146)
+++++||.++-. -++.++++.++-|.
T Consensus 72 ~~al~~W~~fi~------~L~~~~l~~ll~~~ 97 (107)
T PF08064_consen 72 EEALSCWNCFIK------TLDEEDLGPLLDQI 97 (107)
T ss_pred HHHHHHHHHHHH------HCCHHHHHHHHHHH
Confidence 357899999753 24457777777664
No 29
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=20.59 E-value=60 Score=30.74 Aligned_cols=23 Identities=43% Similarity=0.949 Sum_probs=19.0
Q ss_pred hHHhhhhccccCCchhhHHHHHHh
Q 032135 77 NDLADYCSTLEGDDSYSCWRAYFE 100 (146)
Q Consensus 77 ~~l~DyCstLeGDEs~SCW~AyFE 100 (146)
-+|..+--++||-|.| ||+||-+
T Consensus 429 ~~L~~~a~t~eG~~~y-c~rafA~ 451 (534)
T KOG0358|consen 429 LRLSALARTLEGVEAY-CWRAFAD 451 (534)
T ss_pred HHHHHHHhhhccchhH-HHHHHHH
Confidence 4677888899999998 9999754
No 30
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=20.21 E-value=41 Score=25.17 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=21.4
Q ss_pred HhhHHhhhh-CcHHHHHHHHHHhc-Ccchhhh
Q 032135 99 FELKDLEKE-LPKEDIEKLILQSG-GVKSLIG 128 (146)
Q Consensus 99 FE~~dle~E-~Pke~iE~lVrqsG-GvksLI~ 128 (146)
|++.|+.++ ..++++..++.++| |+..||.
T Consensus 27 ~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin 58 (132)
T PRK13344 27 YKEQNLGKEPLTKEEILAILTKTENGIESIVS 58 (132)
T ss_pred eEEEECCCCCCCHHHHHHHHHHhCCCHHHhhc
Confidence 334444333 67899999999996 6788875
Done!