Query 032135
Match_columns 146
No_of_seqs 20 out of 22
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 16:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hp9_A Kappa-hefutoxin 1; scor 59.7 3.6 0.00012 24.0 1.2 20 89-108 2-22 (26)
2 2cos_A Serine/threonine protei 47.2 17 0.00057 24.2 3.0 32 105-137 18-49 (54)
3 2ep8_A Pescadillo homolog 1; A 44.3 12 0.00042 25.9 2.1 17 107-123 23-39 (100)
4 3ii6_X DNA ligase 4; XRCC4, NH 39.3 12 0.00039 29.3 1.5 29 107-135 24-55 (263)
5 2ebw_A DNA repair protein REV1 32.1 25 0.00085 22.7 2.0 28 108-135 26-57 (97)
6 4ap5_A GDP-fucose protein O-fu 29.5 10 0.00034 31.0 -0.3 30 94-123 82-111 (408)
7 3gkx_A Putative ARSC family re 28.5 19 0.00064 25.1 1.0 30 99-128 31-62 (120)
8 1sn9_A BBAT, tetrameric beta-B 28.3 36 0.0012 19.7 2.0 14 110-123 10-23 (26)
9 3fz4_A Putative arsenate reduc 28.0 17 0.00057 25.4 0.6 30 99-128 30-61 (120)
10 2jnu_A RGS14, regulator of G-p 27.8 1.1E+02 0.0037 21.4 4.9 52 51-106 2-55 (154)
11 4id3_A DNA repair protein REV1 25.6 39 0.0013 21.1 2.0 27 109-135 22-53 (92)
12 3rdw_A Putative arsenate reduc 25.4 21 0.00073 24.8 0.8 30 100-129 33-65 (121)
13 3f0i_A Arsenate reductase; str 25.3 27 0.00092 24.2 1.3 30 99-128 31-63 (119)
14 1z56_C DNA ligase IV; DNA repa 24.9 12 0.00041 28.3 -0.6 18 106-123 24-41 (264)
15 1gk6_A Vimentin; intermediate 23.2 20 0.00068 23.0 0.3 17 75-91 40-56 (59)
16 3jz0_A Lincosamide nucleotidyl 20.4 1.7E+02 0.0057 23.8 5.3 40 79-118 232-283 (287)
17 2xv5_A Lamin-A/C; structural p 20.3 30 0.001 23.4 0.7 17 75-91 45-61 (74)
No 1
>1hp9_A Kappa-hefutoxin 1; scorpion toxin, gating modifier, voltage-gated potassium channel; NMR {Synthetic} SCOP: j.33.2.1
Probab=59.66 E-value=3.6 Score=24.00 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=12.9
Q ss_pred Cchh-hHHHHHHhhHHhhhhC
Q 032135 89 DDSY-SCWRAYFELKDLEKEL 108 (146)
Q Consensus 89 DEs~-SCW~AyFE~~dle~E~ 108 (146)
--|| +||+|=-..+--++++
T Consensus 2 ~~cyr~cw~~g~deetck~~c 22 (26)
T 1hp9_A 2 HACYRNCWREGNDEETCKERC 22 (26)
T ss_dssp CCTTTHHHHHHSCTTHHHHHC
T ss_pred ccHHHHHHHccCcHHHHHHHh
Confidence 3467 9999865555555543
No 2
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.17 E-value=17 Score=24.16 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=25.9
Q ss_pred hhhCcHHHHHHHHHHhcCcchhhhhhhhhhhhc
Q 032135 105 EKELPKEDIEKLILQSGGVKSLIGCLHGISSIR 137 (146)
Q Consensus 105 e~E~Pke~iE~lVrqsGGvksLI~~lh~ia~~~ 137 (146)
++=.|.++.|.-|+++|+ ++|...+-.+.+|.
T Consensus 18 eMGFd~erae~Alk~Tg~-~Gle~AmewL~k~~ 49 (54)
T 2cos_A 18 NAGCDQEMAGRALKQTGS-RSIEAALEYISKMS 49 (54)
T ss_dssp HHHCCHHHHHHHHHHHTS-CCHHHHHHHHHHHS
T ss_pred HcCCCHHHHHHHHHHhCc-ccHHHHHHHHHHhc
Confidence 334899999999999988 77888887777664
No 3
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.31 E-value=12 Score=25.86 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=15.6
Q ss_pred hCcHHHHHHHHHHhcCc
Q 032135 107 ELPKEDIEKLILQSGGV 123 (146)
Q Consensus 107 E~Pke~iE~lVrqsGGv 123 (146)
|.|++.+|.+|+..||.
T Consensus 23 e~p~~~le~~I~~~GG~ 39 (100)
T 2ep8_A 23 EVPREALAFIIRSFGGE 39 (100)
T ss_dssp SSCHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHcCCE
Confidence 58999999999999994
No 4
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=39.26 E-value=12 Score=29.27 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=21.3
Q ss_pred hCcHHHHHHHHHHhcCc--chhhhhhhh-hhh
Q 032135 107 ELPKEDIEKLILQSGGV--KSLIGCLHG-ISS 135 (146)
Q Consensus 107 E~Pke~iE~lVrqsGGv--ksLI~~lh~-ia~ 135 (146)
+.++++|+++|++.||. ..+-...|+ ||+
T Consensus 24 ~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~ 55 (263)
T 3ii6_X 24 SQPKPDLENRIAEFGGYIVQNPGPDTYCVIAG 55 (263)
T ss_dssp -CCHHHHHHHHHHTTCEECSSCCTTEEEEECS
T ss_pred CCCHHHHHHHHHHcCCEEEecCCCCEEEEEeC
Confidence 47899999999999994 445555665 554
No 5
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=32.13 E-value=25 Score=22.67 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred CcHHHHHHHHHHhcCc--chhh--hhhhhhhh
Q 032135 108 LPKEDIEKLILQSGGV--KSLI--GCLHGISS 135 (146)
Q Consensus 108 ~Pke~iE~lVrqsGGv--ksLI--~~lh~ia~ 135 (146)
-++++++++|++.||. ..+- .+-|.|+.
T Consensus 26 ~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~ 57 (97)
T 2ebw_A 26 PSAEELRKLMMLHGGQYHVYYSRSKTTHIIAT 57 (97)
T ss_dssp SCHHHHHHHHHHTTCEECSSCCSSSCCEEECS
T ss_pred ccHHHHHHHHHHcCCEEeeecCCCCCEEEEec
Confidence 4689999999999993 3343 45677765
No 6
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=29.52 E-value=10 Score=30.99 Aligned_cols=30 Identities=37% Similarity=0.798 Sum_probs=28.1
Q ss_pred HHHHHHhhHHhhhhCcHHHHHHHHHHhcCc
Q 032135 94 CWRAYFELKDLEKELPKEDIEKLILQSGGV 123 (146)
Q Consensus 94 CW~AyFE~~dle~E~Pke~iE~lVrqsGGv 123 (146)
=|+.||.++.|.+-.|--++|.+.++.|+.
T Consensus 82 pf~~fFDv~~L~~~vpVI~meeFl~~~~~~ 111 (408)
T 4ap5_A 82 PWSEFFDLPSLNKNIPVIEYEQFIAESGGP 111 (408)
T ss_dssp CGGGTBCHHHHHTTSCEEEHHHHHHHSSSS
T ss_pred cHHHhcCHHHHHhhCCeeEHHHHHHHhCCC
Confidence 399999999999999999999999999985
No 7
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=28.47 E-value=19 Score=25.12 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=22.4
Q ss_pred HhhHHhhhh-CcHHHHHHHHHHhc-Ccchhhh
Q 032135 99 FELKDLEKE-LPKEDIEKLILQSG-GVKSLIG 128 (146)
Q Consensus 99 FE~~dle~E-~Pke~iE~lVrqsG-GvksLI~ 128 (146)
||+.|+.++ ...+++..++.++| |++.||.
T Consensus 31 ~~~~di~~~~~~~~eL~~~l~~~g~~~~~l~n 62 (120)
T 3gkx_A 31 YTNRLIVDDNPTVEELKAWIPLSGLPVKKFFN 62 (120)
T ss_dssp CEEEETTTTCCCHHHHHHHHHHHTSCGGGGBC
T ss_pred eEEEecccCcCCHHHHHHHHHHcCCCHHHeEe
Confidence 344455444 56899999999998 7888876
No 8
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=28.28 E-value=36 Score=19.68 Aligned_cols=14 Identities=29% Similarity=0.606 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCc
Q 032135 110 KEDIEKLILQSGGV 123 (146)
Q Consensus 110 ke~iE~lVrqsGGv 123 (146)
.+|+.+|+||..|.
T Consensus 10 adelakllrqa~g~ 23 (26)
T 1sn9_A 10 ADELAKLLRQAXGX 23 (26)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhhCc
Confidence 47899999999875
No 9
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=27.96 E-value=17 Score=25.37 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=22.2
Q ss_pred HhhHHhhhh-CcHHHHHHHHHHhc-Ccchhhh
Q 032135 99 FELKDLEKE-LPKEDIEKLILQSG-GVKSLIG 128 (146)
Q Consensus 99 FE~~dle~E-~Pke~iE~lVrqsG-GvksLI~ 128 (146)
||+.|+.++ ...+++..++.++| |++.||.
T Consensus 30 ~~~~di~~~~~~~~eL~~~l~~~g~~~~~l~n 61 (120)
T 3fz4_A 30 YDAIDIKKNPPAASLIRNWLENSGLELKKFFN 61 (120)
T ss_dssp EEEEETTTSCCCHHHHHHHHHHSCCCGGGGBC
T ss_pred eEEEEeccCchhHHHHHHHHHHcCCCHHHHhC
Confidence 344455544 57899999999998 7888874
No 10
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=27.81 E-value=1.1e+02 Score=21.44 Aligned_cols=52 Identities=12% Similarity=0.337 Sum_probs=39.8
Q ss_pred CCCCCCCch--HHHHHHhcCchhHHhhHhHHhhhhccccCCchhhHHHHHHhhHHhhh
Q 032135 51 VPKLEPFSR--TKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEK 106 (146)
Q Consensus 51 IPKlePFsr--skl~r~~~e~~LleKae~~l~DyCstLeGDEs~SCW~AyFE~~dle~ 106 (146)
||-.++..| ..|+.++++|..+ ....+||..-.-.|...+|.|.-+|+++..
T Consensus 2 ~p~~~~~~~w~~sl~~iL~dp~g~----~~F~~FL~~e~~~Enl~Fw~~ve~~k~~~~ 55 (154)
T 2jnu_A 2 MTEEQPVASWALSFERLLQDPLGL----AYFTEFLKKEFSAENVTFWKACERFQQIPA 55 (154)
T ss_dssp CSSCCSGGGGGTCHHHHHHSHHHH----HHHHHHTTTSSCTHHHHHHHHHHHHHHSCT
T ss_pred CCchHhHHHHHHhHHHHHCChHHH----HHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 555555553 3588899987665 468889888778889999999999998753
No 11
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=25.58 E-value=39 Score=21.12 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHhcCc--chhh---hhhhhhhh
Q 032135 109 PKEDIEKLILQSGGV--KSLI---GCLHGISS 135 (146)
Q Consensus 109 Pke~iE~lVrqsGGv--ksLI---~~lh~ia~ 135 (146)
++++++++|++.||. .++- .+-|.|+.
T Consensus 22 ~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~ 53 (92)
T 4id3_A 22 GRLQLHEMIVLHGGKFLHYLSSKKTVTHIVAS 53 (92)
T ss_dssp CHHHHHHHHHHTTCEEESSCCCTTTCCEEECS
T ss_pred CHHHHHHHHHHCCCEEEEEecCCCceEEEEec
Confidence 678999999999994 4453 45676664
No 12
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=25.39 E-value=21 Score=24.84 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=21.8
Q ss_pred hhHHhhhh-CcHHHHHHHHHHhc--Ccchhhhh
Q 032135 100 ELKDLEKE-LPKEDIEKLILQSG--GVKSLIGC 129 (146)
Q Consensus 100 E~~dle~E-~Pke~iE~lVrqsG--GvksLI~~ 129 (146)
|+.|+.++ ...+++..++.++| +++.||.-
T Consensus 33 ~~~di~~~~~~~~eL~~~l~~~g~~~~~~l~n~ 65 (121)
T 3rdw_A 33 QVVLYLETPPSVDKLKELLQQLGFSDARQLMRT 65 (121)
T ss_dssp EEECTTTSCCCHHHHHHHHHHTTCSSGGGGBCT
T ss_pred EEEeeccCCCcHHHHHHHHHhcCCcCHHHHhcC
Confidence 44445444 56899999999998 77777753
No 13
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=25.30 E-value=27 Score=24.24 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=21.5
Q ss_pred HhhHHhhhh-CcHHHHHHHHHHhc-C-cchhhh
Q 032135 99 FELKDLEKE-LPKEDIEKLILQSG-G-VKSLIG 128 (146)
Q Consensus 99 FE~~dle~E-~Pke~iE~lVrqsG-G-vksLI~ 128 (146)
||+.|+.++ ...+++..++.++| + ++.||.
T Consensus 31 ~~~~di~~~~~t~~eL~~~l~~~g~~~~~~l~n 63 (119)
T 3f0i_A 31 PQVIKYLETSPSVEELKRLYQQLGLNEVRAMMR 63 (119)
T ss_dssp CEEECHHHHCCCHHHHHHHHHHHTCSSGGGGBC
T ss_pred eEEEEeccCcCcHHHHHHHHHHcCCccHHHHhc
Confidence 344455444 67899999999998 6 766664
No 14
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=24.88 E-value=12 Score=28.34 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=15.7
Q ss_pred hhCcHHHHHHHHHHhcCc
Q 032135 106 KELPKEDIEKLILQSGGV 123 (146)
Q Consensus 106 ~E~Pke~iE~lVrqsGGv 123 (146)
.+.|+++|+.+|++.||.
T Consensus 24 ~~~~~~~L~~li~~~GG~ 41 (264)
T 1z56_C 24 IRITRAELEKTIVEHGGK 41 (264)
T ss_dssp SSSSCCCTHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHcCCE
Confidence 357899999999999993
No 15
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=23.24 E-value=20 Score=22.99 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=14.7
Q ss_pred hHhHHhhhhccccCCch
Q 032135 75 SENDLADYCSTLEGDDS 91 (146)
Q Consensus 75 ae~~l~DyCstLeGDEs 91 (146)
-+-+|+.|+..|||.|+
T Consensus 40 Le~EIatYRkLLEgEe~ 56 (59)
T 1gk6_A 40 LDIEIATYRKLLEGEES 56 (59)
T ss_dssp HHHHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHHHccCcc
Confidence 46789999999999986
No 16
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=20.35 E-value=1.7e+02 Score=23.76 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=30.4
Q ss_pred HhhhhccccCCchhhHHHHHHhhHHhhhh------------CcHHHHHHHHH
Q 032135 79 LADYCSTLEGDDSYSCWRAYFELKDLEKE------------LPKEDIEKLIL 118 (146)
Q Consensus 79 l~DyCstLeGDEs~SCW~AyFE~~dle~E------------~Pke~iE~lVr 118 (146)
...+=.|+.+.+--++|+|+|-.-+|=.+ .|+++-+|+..
T Consensus 232 ~~~l~~t~~~~~~~~iw~Al~~~~~LF~~la~~va~~~g~~yp~~~~~~~~~ 283 (287)
T 3jz0_A 232 YKKFAKTTARLDKVELFEAYKNSLLLVMDLQSHLIEQYNLKVTHDILERLLN 283 (287)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCHHHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34566788889999999999986655444 68888888754
No 17
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.27 E-value=30 Score=23.42 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=12.4
Q ss_pred hHhHHhhhhccccCCch
Q 032135 75 SENDLADYCSTLEGDDS 91 (146)
Q Consensus 75 ae~~l~DyCstLeGDEs 91 (146)
-+-+|+.|+..|||+|+
T Consensus 45 Le~EIatYRkLLEGEe~ 61 (74)
T 2xv5_A 45 LDMEIHAYRKLLEGEEE 61 (74)
T ss_dssp HHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 46789999999999986
Done!