Query 032135
Match_columns 146
No_of_seqs 20 out of 22
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 16:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032135.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032135hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t15a2 c.15.1.3 (A:1758-1859) 49.4 4.3 0.00032 24.2 2.0 16 108-123 18-33 (102)
2 d1htaa_ a.22.1.2 (A:) Archaeal 26.7 18 0.0013 21.3 2.2 17 107-123 3-19 (68)
3 d2gtga1 a.64.1.1 (A:2-79) Sapo 24.3 15 0.0011 21.4 1.5 38 60-97 12-49 (78)
4 d1z3ea1 c.47.1.12 (A:1-114) Re 23.8 8.8 0.00064 24.8 0.3 29 100-128 28-58 (114)
5 d1zq1c1 a.182.1.2 (C:457-512) 23.0 12 0.00087 22.1 0.8 17 107-123 1-17 (56)
6 d3pmga2 c.84.1.1 (A:191-303) P 21.1 29 0.0021 22.1 2.5 38 96-135 2-39 (113)
7 d2d6fc1 a.182.1.2 (C:445-503) 19.6 20 0.0014 21.3 1.3 19 107-125 1-19 (59)
8 d1ku5a_ a.22.1.2 (A:) Archaeal 18.1 34 0.0025 20.0 2.2 17 107-123 2-18 (66)
9 d1b3ta_ d.58.8.1 (A:) Epstein 16.7 24 0.0018 25.6 1.4 24 67-90 107-130 (147)
10 d1wima_ g.44.1.1 (A:) UbcM4-in 16.6 27 0.002 21.1 1.4 13 91-103 31-43 (94)
No 1
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.43 E-value=4.3 Score=24.20 Aligned_cols=16 Identities=19% Similarity=0.540 Sum_probs=14.5
Q ss_pred CcHHHHHHHHHHhcCc
Q 032135 108 LPKEDIEKLILQSGGV 123 (146)
Q Consensus 108 ~Pke~iE~lVrqsGGv 123 (146)
.++++|++||.+.||.
T Consensus 18 ~~~~~L~~li~~~GG~ 33 (102)
T d1t15a2 18 MPTDQLEWMVQLCGAS 33 (102)
T ss_dssp SCHHHHHHHHHHTTCE
T ss_pred cCHHHHHHHHHHhCCE
Confidence 6789999999999993
No 2
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=26.65 E-value=18 Score=21.32 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=14.3
Q ss_pred hCcHHHHHHHHHHhcCc
Q 032135 107 ELPKEDIEKLILQSGGV 123 (146)
Q Consensus 107 E~Pke~iE~lVrqsGGv 123 (146)
|+|++.|.++++..|..
T Consensus 3 eLP~a~I~ri~k~~~~~ 19 (68)
T d1htaa_ 3 ELPIAPIGRIIKNAGAE 19 (68)
T ss_dssp CSCHHHHHHHHHHTTCS
T ss_pred cCcHHHHHHHHHHCCcc
Confidence 58999999999987554
No 3
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.29 E-value=15 Score=21.35 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=30.7
Q ss_pred HHHHHHhcCchhHHhhHhHHhhhhccccCCchhhHHHH
Q 032135 60 TKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRA 97 (146)
Q Consensus 60 skl~r~~~e~~LleKae~~l~DyCstLeGDEs~SCW~A 97 (146)
+.++..++++.-.+.-.+++...|..|.++-.-.|=..
T Consensus 12 ~~~~~~l~~~~t~~~I~~~l~~~C~~lp~~~~~~C~~~ 49 (78)
T d2gtga1 12 KEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEV 49 (78)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHhCCcchhhhhHHH
Confidence 34677788898899999999999999988666667554
No 4
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=23.79 E-value=8.8 Score=24.82 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=21.5
Q ss_pred hhHHhhhh-CcHHHHHHHHHHhc-Ccchhhh
Q 032135 100 ELKDLEKE-LPKEDIEKLILQSG-GVKSLIG 128 (146)
Q Consensus 100 E~~dle~E-~Pke~iE~lVrqsG-GvksLI~ 128 (146)
++-++.++ ...++++.++...| |+..||.
T Consensus 28 ~~~d~~~~p~s~~eL~~ll~~~~~~~~~lin 58 (114)
T d1z3ea1 28 VERNIFSEPLSIDEIKQILRMTEDGTDEIIS 58 (114)
T ss_dssp EEEETTTSCCCHHHHHHHHHTCSSCGGGTBC
T ss_pred EEEeeeccCCCHHHHHHHHHHhccCHHHHHH
Confidence 44444444 68999999999987 7888875
No 5
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=22.96 E-value=12 Score=22.11 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=13.6
Q ss_pred hCcHHHHHHHHHHhcCc
Q 032135 107 ELPKEDIEKLILQSGGV 123 (146)
Q Consensus 107 E~Pke~iE~lVrqsGGv 123 (146)
|+|.+..+|+|++.|=-
T Consensus 1 ELP~~k~~Ry~~eygLs 17 (56)
T d1zq1c1 1 ELPQAKVERYVKEYKLD 17 (56)
T ss_dssp CCHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHcCCC
Confidence 57888899998888744
No 6
>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.07 E-value=29 Score=22.11 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=27.6
Q ss_pred HHHHhhHHhhhhCcHHHHHHHHHHhcCcchhhhhhhhhhh
Q 032135 96 RAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISS 135 (146)
Q Consensus 96 ~AyFE~~dle~E~Pke~iE~lVrqsGGvksLI~~lh~ia~ 135 (146)
+.|.|+ |++-...+.|.+++...-+.|-++.|.|+.+.
T Consensus 2 e~Y~~~--l~~~id~~~I~~~~~~~~~lkIv~D~~nGa~~ 39 (113)
T d3pmga2 2 EAYATM--LRNIFDFNALKELLSGPNRLKIRIDAMHGVVG 39 (113)
T ss_dssp HHHHHH--HHTTSCHHHHHHHHHSTTCCCEEEECTTSTTH
T ss_pred HHHHHH--HHHhcCHHHHHHHhccCCCcEEEEECCCCccc
Confidence 356663 66666667777777776788999999998654
No 7
>d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=19.62 E-value=20 Score=21.28 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=14.4
Q ss_pred hCcHHHHHHHHHHhcCcch
Q 032135 107 ELPKEDIEKLILQSGGVKS 125 (146)
Q Consensus 107 E~Pke~iE~lVrqsGGvks 125 (146)
|+|.+..+++|.+.|=-.+
T Consensus 1 ELP~~k~~R~~~eygLs~~ 19 (59)
T d2d6fc1 1 ELPSEKKERIMRDYGLSED 19 (59)
T ss_dssp CCHHHHHHHHHHTTCCCHH
T ss_pred CCHHHHHHHHHHHcCcCHH
Confidence 5788889999988875433
No 8
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=18.07 E-value=34 Score=20.01 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=14.4
Q ss_pred hCcHHHHHHHHHHhcCc
Q 032135 107 ELPKEDIEKLILQSGGV 123 (146)
Q Consensus 107 E~Pke~iE~lVrqsGGv 123 (146)
|+|+..|.++++..|.+
T Consensus 2 ~LP~a~I~rI~k~~~~~ 18 (66)
T d1ku5a_ 2 ELPIAPVDRLIRKAGAE 18 (66)
T ss_dssp CSCHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHhCccc
Confidence 68999999999987654
No 9
>d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
Probab=16.70 E-value=24 Score=25.58 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=18.5
Q ss_pred cCchhHHhhHhHHhhhhccccCCc
Q 032135 67 KEPSLIEKSENDLADYCSTLEGDD 90 (146)
Q Consensus 67 ~e~~LleKae~~l~DyCstLeGDE 90 (146)
+-.-.-|-.+|||.|||+|-.+--
T Consensus 107 qt~~fAe~~kDAi~Dyi~t~P~PT 130 (147)
T d1b3ta_ 107 QTHIFAEVLKDAIKDLVMTKPAPT 130 (147)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCTTG
T ss_pred ehhHHHHHHHHHHHHHHhCCCCCC
Confidence 444566889999999999977643
No 10
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.64 E-value=27 Score=21.07 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=10.3
Q ss_pred hhhHHHHHHhhHH
Q 032135 91 SYSCWRAYFELKD 103 (146)
Q Consensus 91 s~SCW~AyFE~~d 103 (146)
|..||..||+.+-
T Consensus 31 C~~Cl~~~~~~~i 43 (94)
T d1wima_ 31 CTLCLKQYVELLI 43 (94)
T ss_dssp EHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHH
Confidence 3499999999653
Done!