BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032136
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KQN|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQO|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KR2|A Chain A, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|B Chain B, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|C Chain C, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|D Chain D, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|E Chain E, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|F Chain F, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
Length = 279
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 72/105 (68%)
Query: 36 KVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGN 95
KV L+CG+DLLESFA+P W E + I N+G+IC+ R G D +K I ++++L K++ N
Sbjct: 150 KVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDVLWKHRSN 209
Query: 96 IKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140
I +V+E + N ISST+IR + RG SI+YL D V +YI + LY
Sbjct: 210 IHVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHNLY 254
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 72/105 (68%)
Query: 36 KVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGN 95
KV L+CG+DLLESFA+P W E + I N+G+IC+ R G D +K I ++++L K++ N
Sbjct: 161 KVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDVLWKHRSN 220
Query: 96 IKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140
I +V+E + N ISST+IR + RG SI+YL D V +YI + LY
Sbjct: 221 IHVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHNLY 265
>pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nicotinamide
Mononucleotide Adenylyltransferase
Length = 279
Score = 108 bits (270), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 71/105 (67%)
Query: 36 KVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGN 95
KV L+CG+DLLESFA+P W E + I N+G+IC+ R G D +K I ++++L K++ N
Sbjct: 150 KVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDVLWKHRSN 209
Query: 96 IKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140
I +V+E N ISST+IR + RG SI+YL D V +YI + LY
Sbjct: 210 IHVVNEWFANDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHNLY 254
>pdb|1NUP|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complex With Nmn
pdb|1NUP|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complex With Nmn
pdb|1NUQ|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Naad
pdb|1NUQ|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Naad
pdb|1NUR|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE
pdb|1NUR|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE
pdb|1NUS|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog And Nmn
pdb|1NUS|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog And Nmn
pdb|1NUT|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog
pdb|1NUT|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog
pdb|1NUU|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Nad
pdb|1NUU|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Nad
Length = 252
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 13/150 (8%)
Query: 4 QANQSGYQRTLTVLSRVKNFLIEA-----------GLISTESL--KVMLVCGSDLLESFA 50
++ Q+ + T+ VL + L+ + L ST + ++ L+CG+D+L++F
Sbjct: 84 ESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQ 143
Query: 51 IPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISST 110
P W + I FG++C+ R D + I+++ IL ++ NI L E V N+IS+T
Sbjct: 144 TPNLWKDAHIQEIVEKFGLVCVGRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISAT 203
Query: 111 RIRDCICRGLSIKYLTEDKVIDYIRESRLY 140
IR + +G S+KYL D VI YI++ LY
Sbjct: 204 YIRRALGQGQSVKYLIPDAVITYIKDHGLY 233
>pdb|1YUM|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUM|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUM|C Chain C, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUM|D Chain D, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUN|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUN|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
Length = 242
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 81 KIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140
+ ++D + L G I V + P +S+T+IR + G S+++L D V++YI LY
Sbjct: 172 RSVADPQALKGPGGQITFVWQ-TPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLY 230
>pdb|1YUL|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
Length = 242
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 81 KIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140
+ ++D + L G I V + P +S+T+IR + G S+++L D V++YI LY
Sbjct: 172 RSVADPQALKGPGGQITFVWQ-TPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLY 230
>pdb|1KAM|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|E Chain E, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|F Chain F, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
Length = 194
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 19/106 (17%)
Query: 36 KVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGN 95
++ + G+D++E +P ++ +++ + + I ++R G VE
Sbjct: 105 QLFFIIGADMIE--YLPKWYKLDELLNLIQ---FIGVKRPGFHVETPYP----------- 148
Query: 96 IKLVDELVPN-QISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140
L+ VP ++SST IR+ YL DKV Y+ E+ LY
Sbjct: 149 --LLFADVPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLY 192
>pdb|2H2A|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Staphylococcus Aureus: Product
Bound Form 2
pdb|2H2A|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Staphylococcus Aureus: Product
Bound Form 2
Length = 189
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 90 DKNKGNIK--LVDELVPN-QISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140
DKN N++ ++ +P ISST IR + G SI+ L V +YI+ LY
Sbjct: 134 DKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLY 187
>pdb|2H29|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Staphylococcus Aureus: Product
Bound Form 1
pdb|2H29|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Staphylococcus Aureus: Product
Bound Form 1
Length = 189
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 90 DKNKGNIK--LVDELVPN-QISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140
DKN N++ ++ +P ISST IR + G SI+ L V +YI+ LY
Sbjct: 134 DKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLY 187
>pdb|2V6Z|M Chain M, Solution Structure Of Amino Terminal Domain Of Human Dna
Polymerase Epsilon Subunit B
Length = 99
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 90 DKNKGNIKLVDELVPNQI-----SSTRIRDCICRGLSIKYLTE 127
D N + +L ++ P ++ S+ ++R + RG +IKYLTE
Sbjct: 13 DPNSSSARLQVDMAPERLRSRALSAFKLRGLLLRGEAIKYLTE 55
>pdb|1I0E|A Chain A, Crystal Structure Of Creatine Kinase From Human Muscle
pdb|1I0E|B Chain B, Crystal Structure Of Creatine Kinase From Human Muscle
pdb|1I0E|C Chain C, Crystal Structure Of Creatine Kinase From Human Muscle
pdb|1I0E|D Chain D, Crystal Structure Of Creatine Kinase From Human Muscle
Length = 381
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 84 SDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLT 126
+D D N N+K D+L PN + S+R+R G SIK T
Sbjct: 103 TDKHKTDLNHENLKGGDDLDPNYVLSSRVR----TGRSIKGYT 141
>pdb|1VRP|A Chain A, The 2.1 Structure Of T. Californica Creatine Kinase
Complexed With The Transition-State Analogue Complex,
Adp- Mg 2+ NO3-CREATINE
pdb|1VRP|B Chain B, The 2.1 Structure Of T. Californica Creatine Kinase
Complexed With The Transition-State Analogue Complex,
Adp- Mg 2+ NO3-CREATINE
Length = 381
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 84 SDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIK 123
+D D N+ N+K D+L PN + S+R+R G SIK
Sbjct: 103 TDKHKTDLNQENLKGGDDLDPNYVLSSRVR----TGRSIK 138
>pdb|1B25|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B4N|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
Length = 619
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 68 GVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTE 127
G + + EGQ+ E + +L N G KL + V N+I+ D I G+SI ++ E
Sbjct: 292 GNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVME 351
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 8 SGYQRTLTVLSRVKNF-LIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN 66
SG R L R +F LI + + L + L E A FW + C N
Sbjct: 73 SGVIRLLDWFERPDSFVLILERMEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN 132
Query: 67 FGVICIRREGQDVEKIISDNEILDKNKGNIKLVD 100
GV+ R+ +D +N ++D N+G +KL+D
Sbjct: 133 CGVL--HRDIKD------ENILIDLNRGELKLID 158
>pdb|3B6R|A Chain A, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3B6R|B Chain B, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRB|A Chain A, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRB|B Chain B, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRE|A Chain A, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRE|B Chain B, Crystal Structure Of Human Brain-Type Creatine Kinase
Length = 381
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 84 SDNEILDKNKGNIKLVDELVPNQISSTRIR 113
SD D N N++ D+L PN + S+R+R
Sbjct: 103 SDEHKTDLNPDNLQGGDDLDPNYVLSSRVR 132
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 25.8 bits (55), Expect = 9.1, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 76 GQDVEKIISDNEILDKNKGNIK 97
G ++++I S+ EI+ K +GN+K
Sbjct: 32 GLELDEITSEKEIISKEQGNVK 53
>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine
pdb|1YI3|A Chain A, Crystal Structure Of Pim-1 Bound To Ly294002
pdb|1YI4|A Chain A, Structure Of Pim-1 Bound To Adenosine
Length = 273
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 8 SGYQRTLTVLSRVKNF-LIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN 66
SG R L R +F LI + L + L E A FW + C N
Sbjct: 69 SGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN 128
Query: 67 FGVICIRREGQDVEKIISDNEILDKNKGNIKLVD 100
GV+ I +N ++D N+G +KL+D
Sbjct: 129 XGVLH--------RDIKDENILIDLNRGELKLID 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,044,170
Number of Sequences: 62578
Number of extensions: 154474
Number of successful extensions: 528
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 45
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)