Query 032136
Match_columns 146
No_of_seqs 214 out of 1056
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00482 nicotinate (nicotina 100.0 1.4E-36 3E-41 226.4 10.2 125 2-140 69-193 (193)
2 PRK00071 nadD nicotinic acid m 100.0 7.5E-36 1.6E-40 224.0 10.4 126 2-141 76-202 (203)
3 PRK06973 nicotinic acid mononu 100.0 8.9E-36 1.9E-40 228.8 10.9 127 2-141 96-242 (243)
4 PLN02945 nicotinamide-nucleoti 100.0 3.7E-35 8.1E-40 224.9 12.5 140 2-141 97-236 (236)
5 cd09286 NMNAT_Eukarya Nicotina 100.0 1.2E-34 2.5E-39 220.7 12.5 139 2-140 76-225 (225)
6 COG1057 NadD Nicotinic acid mo 100.0 4.3E-34 9.2E-39 213.1 8.7 121 2-142 75-197 (197)
7 cd02165 NMNAT Nicotinamide/nic 100.0 2.6E-32 5.6E-37 203.1 10.1 123 2-140 70-192 (192)
8 PRK07152 nadD putative nicotin 100.0 9.8E-31 2.1E-35 209.9 9.6 114 2-142 73-186 (342)
9 PRK08887 nicotinic acid mononu 100.0 1.5E-30 3.3E-35 191.2 7.4 100 2-143 71-173 (174)
10 KOG3199 Nicotinamide mononucle 99.9 1.1E-25 2.3E-30 166.3 10.8 143 2-144 84-234 (234)
11 cd02163 PPAT Phosphopantethein 99.5 3E-15 6.5E-20 107.9 2.7 84 11-136 69-153 (153)
12 TIGR01510 coaD_prev_kdtB pante 99.5 6E-15 1.3E-19 106.5 3.7 85 11-137 69-154 (155)
13 PRK00168 coaD phosphopantethei 99.4 1.1E-13 2.3E-18 100.4 4.1 85 11-137 71-156 (159)
14 PF01467 CTP_transf_2: Cytidyl 99.3 7.8E-13 1.7E-17 93.5 2.2 76 35-115 82-157 (157)
15 cd02166 NMNAT_Archaea Nicotina 98.3 3.5E-06 7.5E-11 61.3 6.9 74 54-139 82-158 (163)
16 TIGR01527 arch_NMN_Atrans nico 98.3 1.7E-06 3.6E-11 63.2 5.0 34 105-138 122-155 (165)
17 cd02168 NMNAT_Nudix Nicotinami 98.3 8.4E-07 1.8E-11 65.6 3.5 37 102-138 127-166 (181)
18 PRK01153 nicotinamide-nucleoti 97.9 9.7E-06 2.1E-10 59.6 3.4 34 105-138 125-158 (174)
19 cd02039 cytidylyltransferase_l 97.9 2.4E-05 5.2E-10 54.5 5.2 74 3-115 70-143 (143)
20 TIGR00339 sopT ATP sulphurylas 97.8 0.00013 2.9E-09 59.8 8.2 112 1-135 256-382 (383)
21 PRK13793 nicotinamide-nucleoti 97.5 9E-05 2E-09 55.5 3.2 33 105-137 134-166 (196)
22 PRK05379 bifunctional nicotina 96.8 0.00093 2E-08 54.0 2.8 34 104-137 135-171 (340)
23 cd02169 Citrate_lyase_ligase C 96.6 0.00095 2.1E-08 53.1 1.3 30 105-134 266-297 (297)
24 COG0669 CoaD Phosphopantethein 96.4 0.0049 1.1E-07 44.4 3.9 43 95-137 115-157 (159)
25 cd02170 cytidylyltransferase c 96.1 0.0095 2.1E-07 41.6 4.2 13 105-117 122-134 (136)
26 smart00764 Citrate_ly_lig Citr 96.0 0.0032 6.9E-08 46.6 1.2 30 105-134 151-182 (182)
27 PF08218 Citrate_ly_lig: Citra 94.5 0.018 3.9E-07 42.4 1.4 30 105-134 151-182 (182)
28 TIGR00124 cit_ly_ligase [citra 94.0 0.037 8E-07 44.7 2.2 34 105-138 295-330 (332)
29 COG3053 CitC Citrate lyase syn 91.9 0.12 2.5E-06 41.2 2.2 34 104-137 301-336 (352)
30 PF01747 ATP-sulfurylase: ATP- 90.1 0.42 9E-06 36.4 3.7 32 105-136 181-213 (215)
31 PRK13660 hypothetical protein; 88.5 8.3 0.00018 28.6 9.6 111 10-136 55-177 (182)
32 PRK13670 hypothetical protein; 87.9 0.8 1.7E-05 37.9 4.1 31 106-136 200-232 (388)
33 cd02064 FAD_synthetase_N FAD s 87.7 0.39 8.5E-06 35.2 2.0 16 105-120 144-159 (180)
34 PRK15364 pathogenicity island 86.8 0.76 1.7E-05 34.0 3.0 22 119-140 92-113 (196)
35 PRK07143 hypothetical protein; 86.8 0.43 9.3E-06 37.7 1.9 34 87-120 128-163 (279)
36 cd00517 ATPS ATP-sulfurylase. 84.2 1.5 3.2E-05 35.9 3.9 32 105-136 320-352 (353)
37 TIGR00083 ribF riboflavin kina 83.9 0.7 1.5E-05 36.6 1.9 16 105-120 142-157 (288)
38 COG1056 NadR Nicotinamide mono 82.7 1.4 3.1E-05 32.4 2.9 33 104-136 126-159 (172)
39 PRK04149 sat sulfate adenylylt 82.2 1.9 4.2E-05 35.7 3.8 33 105-137 347-380 (391)
40 TIGR02199 rfaE_dom_II rfaE bif 80.3 2.4 5.3E-05 29.9 3.4 27 89-117 117-143 (144)
41 PRK05627 bifunctional riboflav 77.9 1.4 2.9E-05 35.3 1.6 28 93-120 145-174 (305)
42 PRK13671 hypothetical protein; 77.2 2.2 4.8E-05 34.1 2.6 30 106-135 195-224 (298)
43 PF02201 SWIB: SWIB/MDM2 domai 73.6 1.8 4E-05 27.2 1.1 18 127-144 26-43 (76)
44 cd02171 G3P_Cytidylyltransfera 73.6 2 4.3E-05 29.4 1.3 28 88-118 101-128 (129)
45 PRK05537 bifunctional sulfate 72.6 4.4 9.4E-05 35.2 3.5 32 105-136 351-383 (568)
46 COG0196 RibF FAD synthase [Coe 72.1 2.5 5.5E-05 33.8 1.8 15 106-120 160-174 (304)
47 COG2046 MET3 ATP sulfurylase ( 71.7 5.3 0.00011 32.9 3.5 33 105-137 343-376 (397)
48 PRK13964 coaD phosphopantethei 66.4 8.5 0.00018 27.3 3.3 25 96-120 116-140 (140)
49 TIGR01518 g3p_cytidyltrns glyc 66.4 2.5 5.4E-05 28.9 0.6 20 95-116 106-125 (125)
50 COG1019 Predicted nucleotidylt 65.8 7.5 0.00016 28.1 2.9 13 105-117 135-147 (158)
51 PF06908 DUF1273: Protein of u 65.5 19 0.0004 26.5 5.1 112 10-135 55-176 (177)
52 PLN02388 phosphopantetheine ad 64.5 3.9 8.5E-05 30.2 1.3 15 104-118 152-166 (177)
53 cd02167 NMNAT_NadR Nicotinamid 64.0 2.1 4.5E-05 30.8 -0.2 24 104-130 134-157 (158)
54 PF03433 EspA: EspA-like secre 63.0 2.4 5.2E-05 31.5 0.0 18 122-139 95-112 (188)
55 KOG1946 RNA polymerase I trans 61.3 5.5 0.00012 30.9 1.7 22 123-144 121-142 (240)
56 smart00151 SWIB SWI complex, B 58.9 9.4 0.0002 24.0 2.2 18 126-143 25-42 (77)
57 PF05636 HIGH_NTase1: HIGH Nuc 57.0 3.5 7.7E-05 34.1 0.0 29 106-134 201-231 (388)
58 PF10828 DUF2570: Protein of u 55.9 16 0.00034 24.6 3.0 31 106-136 77-107 (110)
59 PF07875 Coat_F: Coat F domain 54.0 5.2 0.00011 24.1 0.4 40 104-143 24-63 (64)
60 KOG0564 5,10-methylenetetrahyd 50.8 17 0.00036 31.3 3.0 24 3-26 123-146 (590)
61 COG1323 Predicted nucleotidylt 46.8 13 0.00029 30.5 1.8 33 105-137 203-237 (358)
62 PRK08099 bifunctional DNA-bind 46.7 7.4 0.00016 32.3 0.3 26 105-133 192-217 (399)
63 TIGR03765 ICE_PFL_4695 integra 45.3 17 0.00037 24.5 1.9 64 35-116 24-89 (105)
64 PRK00777 phosphopantetheine ad 45.0 13 0.00028 26.6 1.3 14 105-118 131-144 (153)
65 PF11072 DUF2859: Protein of u 40.9 20 0.00044 25.5 1.8 65 35-117 62-128 (142)
66 KOG0037 Ca2+-binding protein, 40.2 36 0.00078 26.0 3.1 31 104-137 138-168 (221)
67 PF02826 2-Hacid_dh_C: D-isome 39.6 1.4E+02 0.0031 21.4 6.3 61 60-120 85-145 (178)
68 cd02164 PPAT_CoAS phosphopante 39.6 10 0.00022 26.8 0.1 11 104-114 132-142 (143)
69 PRK01170 phosphopantetheine ad 37.6 53 0.0011 26.6 3.9 13 104-116 127-139 (322)
70 PF10264 Stork_head: Winged he 37.3 23 0.00049 22.8 1.4 24 3-26 21-45 (80)
71 PRK10144 formate-dependent nit 36.9 50 0.0011 23.1 3.2 23 110-137 64-86 (126)
72 TIGR03147 cyt_nit_nrfF cytochr 36.9 49 0.0011 23.1 3.2 23 110-137 64-86 (126)
73 KOG2406 MADS box transcription 36.9 42 0.00091 29.1 3.3 58 12-75 97-158 (635)
74 PF01081 Aldolase: KDPG and KH 36.6 47 0.001 24.8 3.3 102 3-136 37-141 (196)
75 PF12728 HTH_17: Helix-turn-he 35.4 58 0.0013 18.1 2.9 34 104-137 10-50 (51)
76 cd00645 AsnA Asparagine synthe 32.9 86 0.0019 25.2 4.3 111 1-113 108-238 (309)
77 cd02767 MopB_ydeP The MopB_yde 29.8 59 0.0013 28.3 3.2 34 35-73 405-438 (574)
78 KOG1749 40S ribosomal protein 29.4 5.3 0.00012 27.6 -2.6 29 110-138 64-98 (143)
79 PRK05425 asparagine synthetase 29.3 1.2E+02 0.0025 24.7 4.5 111 1-113 119-248 (327)
80 COG4474 Uncharacterized protei 26.2 1.7E+02 0.0036 21.7 4.5 57 12-81 57-118 (180)
81 PHA02047 phage lambda Rz1-like 24.6 1.1E+02 0.0025 20.3 3.1 32 105-136 64-96 (101)
82 PF03918 CcmH: Cytochrome C bi 24.2 76 0.0016 22.6 2.4 22 111-137 65-86 (148)
83 PRK13395 ureidoglycolate hydro 24.2 62 0.0014 23.7 2.0 41 36-78 107-147 (171)
84 PRK10391 oriC-binding nucleoid 24.1 75 0.0016 19.8 2.1 22 113-134 47-70 (71)
85 KOG3988 Protein-tyrosine sulfo 23.6 93 0.002 25.2 3.0 25 8-40 159-183 (378)
86 PF04308 DUF458: Protein of un 23.6 81 0.0018 22.5 2.5 43 15-77 5-47 (144)
87 PF11396 DUF2874: Protein of u 23.5 54 0.0012 18.9 1.4 14 124-137 6-19 (61)
88 TIGR01701 Fdhalpha-like oxidor 23.4 84 0.0018 28.3 3.1 34 35-73 442-475 (743)
89 TIGR02193 heptsyl_trn_I lipopo 23.0 97 0.0021 24.1 3.1 26 12-45 15-40 (319)
90 cd03789 GT1_LPS_heptosyltransf 22.6 1E+02 0.0022 23.5 3.2 28 12-47 15-42 (279)
91 COG5204 SPT4 Transcription elo 22.3 94 0.002 20.7 2.4 25 122-146 84-109 (112)
92 cd00839 MPP_PAPs purple acid p 22.3 61 0.0013 24.9 1.8 53 11-72 18-74 (294)
93 PRK08410 2-hydroxyacid dehydro 21.9 3.6E+02 0.0077 21.4 6.1 62 59-120 189-250 (311)
94 PF11868 DUF3388: Protein of u 21.5 37 0.0008 25.1 0.4 15 104-118 82-96 (192)
95 COG0111 SerA Phosphoglycerate 21.1 3.7E+02 0.0081 21.6 6.1 61 60-120 191-251 (324)
96 PRK10964 ADP-heptose:LPS hepto 21.1 99 0.0022 24.2 2.8 27 11-45 15-41 (322)
97 PRK03606 ureidoglycolate hydro 21.0 83 0.0018 22.8 2.1 40 37-78 107-146 (162)
98 PRK11316 bifunctional heptose 20.7 1.1E+02 0.0025 25.4 3.2 27 90-118 447-473 (473)
99 PRK06015 keto-hydroxyglutarate 20.4 1E+02 0.0023 23.1 2.6 102 3-136 33-137 (201)
100 PF12651 RHH_3: Ribbon-helix-h 20.2 51 0.0011 18.3 0.7 19 119-137 25-43 (44)
101 PRK05718 keto-hydroxyglutarate 20.2 72 0.0016 24.1 1.7 102 3-136 44-148 (212)
No 1
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=100.00 E-value=1.4e-36 Score=226.43 Aligned_cols=125 Identities=30% Similarity=0.493 Sum_probs=105.5
Q ss_pred cccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK 81 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~ 81 (146)
++|+++++++||++||++|+++||+ .+|+||||+|+|.+|++ |+++ ++|++.|+|+|++|+|++...
T Consensus 69 ~~E~~~~~~syT~~tl~~l~~~~p~--------~~~~~iiG~D~l~~l~~---W~~~--~~i~~~~~~iv~~R~g~~~~~ 135 (193)
T TIGR00482 69 DFEIKRGGPSYTIDTLKHLKKKYPD--------VELYFIIGADALRSFPL---WKDW--QELLELVHLVIVPRPGYTLDK 135 (193)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHCCC--------CeEEEEEcHHHhhhhcc---ccCH--HHHHHhCcEEEEeCCCCCcch
Confidence 6899999999999999999999998 89999999999999995 5554 999999999999999976432
Q ss_pred hccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCC
Q 032136 82 IISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140 (146)
Q Consensus 82 ~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY 140 (146)
.............++.+++ .+..+||||+||+++++|++++++||++|++||++|+||
T Consensus 136 ~~~~~~~~~~~~~~i~~~~-~~~~~iSST~IR~~l~~g~~~~~lvP~~V~~YI~~~~LY 193 (193)
T TIGR00482 136 ALLEKAILRMHHGNLTLLH-NPRVPISSTEIRQRIRQGKSIEYLLPDPVIKYIKQHGLY 193 (193)
T ss_pred hhhHHHHhcccCCcEEEEc-CCccccCHHHHHHHHHcCCCchhhCCHHHHHHHHHhCCC
Confidence 1000000001234688885 778999999999999999999999999999999999999
No 2
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=7.5e-36 Score=224.01 Aligned_cols=126 Identities=26% Similarity=0.408 Sum_probs=107.5
Q ss_pred cccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK 81 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~ 81 (146)
++|+++++++||++||++|++.||+ .+|+||||+|++.+|++ |+++ ++|+++|+|+|++|+|.....
T Consensus 76 ~~E~~~~~~syT~~tl~~l~~~~p~--------~~~~fiiG~D~l~~l~~---W~~~--~~i~~~~~~iv~~R~g~~~~~ 142 (203)
T PRK00071 76 DIELERPGPSYTIDTLRELRARYPD--------VELVFIIGADALAQLPR---WKRW--EEILDLVHFVVVPRPGYPLEA 142 (203)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHCCC--------CcEEEEEcHHHhhhccc---ccCH--HHHHHhCcEEEEeCCCCCccc
Confidence 6899999999999999999999998 89999999999999995 5554 999999999999999976432
Q ss_pred hc-cchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCC
Q 032136 82 II-SDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 141 (146)
Q Consensus 82 ~~-~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~ 141 (146)
.. .....+....+++.+++ .+..+||||+||+++++|++++++||++|.+||++|+||+
T Consensus 143 ~~~~~~~~~~~~~~~i~~~~-~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~YI~~~~LY~ 202 (203)
T PRK00071 143 LALPALQQLLEAAGAITLLD-VPLLAISSTAIRERIKEGRPIRYLLPEAVLDYIEKHGLYR 202 (203)
T ss_pred cchhHHHHhhccCCCEEEEe-CCCCccCHHHHHHHHHcCCChhHhCCHHHHHHHHHhCccC
Confidence 11 00111212256788986 7889999999999999999999999999999999999996
No 3
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=8.9e-36 Score=228.83 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=103.6
Q ss_pred cccccCCCccchHHHHHHHHHHh-hhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVE 80 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~-~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~ 80 (146)
++|++++|++||++||++|+++| |+ .+||||||+|+|.+|++|+.| ++|+++|+|||+.|+|++..
T Consensus 96 ~~Ei~~~g~syTidTL~~l~~~~~p~--------~~~~fiiG~D~l~~l~~W~~~-----~~L~~~~~lvV~~R~g~~~~ 162 (243)
T PRK06973 96 TDEIEHAGPTYTVDTLARWRERIGPD--------ASLALLIGADQLVRLDTWRDW-----RRLFDYAHLCAATRPGFDLG 162 (243)
T ss_pred HhhhhCCCCCcHHHHHHHHHHHcCCC--------CCEEEEEchhhHhhcCCcccH-----HHHHHhCCEEEEECCCCCcc
Confidence 68999999999999999999999 77 899999999999999965555 99999999999999997643
Q ss_pred hhcc-----------chHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcC--------CCCCccChHHHHHHHHhcCCCC
Q 032136 81 KIIS-----------DNEILDKNKGNIKLVDELVPNQISSTRIRDCICRG--------LSIKYLTEDKVIDYIRESRLYL 141 (146)
Q Consensus 81 ~~~~-----------~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g--------~~i~~lvp~~V~~YI~~~~LY~ 141 (146)
.... ....+.+..++..++...+.++||||+||+++++| ++++++||++|++||++|+||+
T Consensus 163 ~~~~~~~~~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ISST~IR~~l~~g~~~~~~~~~~i~~lvP~~V~~YI~~~~LY~ 242 (243)
T PRK06973 163 AASPAVAAEIAARQADADVLQATPAGHLLIDTTLAFDLSATDIRAHLRACIARRAQVPDASAEHVPAAVWAYILQHRLYH 242 (243)
T ss_pred cchhHHHHHHhhhhhhhhhhhcCCCceEEEcCCCcccccHHHHHHHHHcCCCcccccCCChhHhCCHHHHHHHHHcCCCC
Confidence 1100 01112222223444433667899999999999999 9999999999999999999996
No 4
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=100.00 E-value=3.7e-35 Score=224.88 Aligned_cols=140 Identities=66% Similarity=1.126 Sum_probs=112.3
Q ss_pred cccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK 81 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~ 81 (146)
+||+++++++||++||++|+++||++++.+.+..+||||||+|+|.+|++|++|++++.++|++.|+|||+.|+|.....
T Consensus 97 ~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~~~l~~~~~~vV~~R~g~~~~~ 176 (236)
T PLN02945 97 PWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDLLESFSTPGVWIPDQVRTICRDYGVVCIRREGQDVEK 176 (236)
T ss_pred HHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhHHHhcCCCCcCCHHHHHHHHHhCCEEEEeCCCCCHHH
Confidence 68999999999999999999999522111112279999999999999999988998755679999999999999987543
Q ss_pred hccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCC
Q 032136 82 IISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 141 (146)
Q Consensus 82 ~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~ 141 (146)
...+...+...++++.+++..+..+||||+||+++++|++++++||++|.+||++|+||.
T Consensus 177 ~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~i~~lvP~~V~~YI~~~~LY~ 236 (236)
T PLN02945 177 LVSQDEILNENRGNILVVDDLVPNSISSTRVRECISRGLSVKYLTPDGVIDYIKEHGLYM 236 (236)
T ss_pred HhhcchhhhhCcCCEEEecccccccccHHHHHHHHHcCCCchhhCCHHHHHHHHHcCCCC
Confidence 211112233334567777433468999999999999999999999999999999999995
No 5
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=100.00 E-value=1.2e-34 Score=220.68 Aligned_cols=139 Identities=40% Similarity=0.699 Sum_probs=111.0
Q ss_pred cccccCCCccchHHHHHHHHHHhhhccc-----------CcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEE
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGL-----------ISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVI 70 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~-----------~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~i 70 (146)
++|+.+++++||++||+++++.||++.+ ......+|+||||+|+|.+|++|+.|+++..++|++.|+|+
T Consensus 76 ~~E~~~~~~syT~~TL~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~e~ll~~~~~v 155 (225)
T cd09286 76 DWESLQPEWMRTAKVLRHHREEINNKYGGIEGAAKRVLDGSRREVKIMLLCGADLLESFGIPGLWKDADLEEILGEFGLV 155 (225)
T ss_pred ehhccCCccccHHHHHHHHHHHhcccccccccccccccccccCCceEEEEecHhHHHhcCCCCcCCHHHHHHHHHhCCEE
Confidence 6899999999999999999999983100 00112799999999999999998889853349999999999
Q ss_pred EEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCC
Q 032136 71 CIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140 (146)
Q Consensus 71 V~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY 140 (146)
|++|+|+...........+..+.+++.++...+..+||||+||+++++|++++++||++|++||++|+||
T Consensus 156 v~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~~~~llp~~V~~YI~~~~LY 225 (225)
T cd09286 156 VVERTGSDPENFIASSDILRKYQDNIHLVKDWIPNDISSTKVRRALRRGMSVKYLLPDPVIEYIEQHQLY 225 (225)
T ss_pred EEeCCCCCHHHhhhccchhHHhhCCEEEEecCcccccChHHHHHHHHcCCCchhcCCHHHHHHHHHcCCC
Confidence 9999998654321111223344567888752345699999999999999999999999999999999999
No 6
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=4.3e-34 Score=213.12 Aligned_cols=121 Identities=30% Similarity=0.426 Sum_probs=102.3
Q ss_pred cccccCCCccchHHHHHHHHHHh-hhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCC-h
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQD-V 79 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~-~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~-~ 79 (146)
++|++|+|+|||++||++|++++ |+ .+||||||+|+|.+|++ |+++ ++|+++|+|||+.|+|+. .
T Consensus 75 ~~e~~r~g~sYT~dTl~~~~~~~~p~--------~~~~fIiGaD~l~~l~~---W~~~--~ell~~~~~vv~~Rp~~~~~ 141 (197)
T COG1057 75 DREIKRGGPSYTIDTLEHLRQEYGPD--------VELYFIIGADNLASLPK---WYDW--DELLKLVTFVVAPRPGYGEL 141 (197)
T ss_pred HHHHHcCCCcchHHHHHHHHHHhCCC--------CcEEEEEehHHhhhhhh---hhhH--HHHHHhCCEEEEecCCchhh
Confidence 68999999999999999999555 65 79999999999999995 5554 999999999999999985 1
Q ss_pred hhhccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCCC
Q 032136 80 EKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 142 (146)
Q Consensus 80 ~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~~ 142 (146)
... +....+.+.+++ .+.++||||.||++++.|+++.+++|++|.+||.+|+||..
T Consensus 142 ~~~------~~~~~~~~~~~~-~~~~~ISSt~IR~~~~~~~~~~~llP~~V~~YI~~~~LY~~ 197 (197)
T COG1057 142 ELS------LLSSGGAIILLD-LPRLDISSTEIRERIRRGASVDYLLPDSVLSYIEERGLYRG 197 (197)
T ss_pred hhh------hhcCCceEEEcc-CccccCchHHHHHHHhCCCCchhcCCHHHHHHHHHhccccC
Confidence 111 111124566664 88899999999999999999999999999999999999973
No 7
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.98 E-value=2.6e-32 Score=203.13 Aligned_cols=123 Identities=28% Similarity=0.370 Sum_probs=105.1
Q ss_pred cccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK 81 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~ 81 (146)
++|+++++++||++||++|++.||+ .+|+||||+|++.+|+ +|+++ ++|++.++|+|++|+|.....
T Consensus 70 ~~e~~~~~~~~t~~tl~~l~~~~p~--------~~~~~liG~D~l~~~~---~W~~~--~~i~~~~~~iv~~R~g~~~~~ 136 (192)
T cd02165 70 DIEIKRDGPSYTIDTLEELRERYPN--------AELYFIIGSDNLIRLP---KWYDW--EELLSLVHLVVAPRPGYPIED 136 (192)
T ss_pred HHHHhCCCCCCHHHHHHHHHHhccC--------CCEEEEEcHHHhhhcc---cccCH--HHHHHhCcEEEEeCCCCCccc
Confidence 6899999999999999999999998 8999999999999999 56665 999999999999999976432
Q ss_pred hccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCC
Q 032136 82 IISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140 (146)
Q Consensus 82 ~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY 140 (146)
..... ......++.+++ .+..+||||+||+++++|+++.++||++|.+||++|+||
T Consensus 137 ~~~~~--~~~~~~~~~~~~-~~~~~iSST~IR~~~~~g~~~~~lvp~~V~~yI~~~~lY 192 (192)
T cd02165 137 ASLEK--LLLPGGRIILLD-NPLLNISSTEIRERLKNGKSIRYLLPPAVADYIKEHGLY 192 (192)
T ss_pred chhhh--hccCCCcEEEec-CCccccCHHHHHHHHHcCCChhHhCCHHHHHHHHHccCC
Confidence 21110 111234677775 777999999999999999999999999999999999999
No 8
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.97 E-value=9.8e-31 Score=209.92 Aligned_cols=114 Identities=28% Similarity=0.347 Sum_probs=99.3
Q ss_pred cccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK 81 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~ 81 (146)
++|+++++++||++||++|+++||+ .+|+||||+|++.+|++ |+++ ++|+++|+|+|++|+|.....
T Consensus 73 ~~E~~~~~~syt~~tl~~l~~~~p~--------~~~~~iiG~D~~~~l~~---W~~~--~~l~~~~~~iv~~R~g~~~~~ 139 (342)
T PRK07152 73 DFEIKRQNVSYTIDTIKYFKKKYPN--------DEIYFIIGSDNLEKFKK---WKNI--EEILKKVQIVVFKRKKNINKK 139 (342)
T ss_pred HHHHhCCCCCcHHHHHHHHHHhCCC--------CcEEEEecHHHhhhccc---ccCH--HHHHHhCCEEEEECCCCCccc
Confidence 6899999999999999999999998 89999999999999995 5554 999999999999999976432
Q ss_pred hccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCCC
Q 032136 82 IISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 142 (146)
Q Consensus 82 ~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~~ 142 (146)
. +.+ .++.+++ .+.++||||+||+++++|+ ||++|++||++|+||..
T Consensus 140 ~------~~~--~~i~~~~-~~~~~iSST~IR~~~~~~~-----vP~~V~~YI~~~~LY~e 186 (342)
T PRK07152 140 N------LKK--YNVLLLK-NKNLNISSTKIRKGNLLGK-----LDPKVNDYINENFLYLE 186 (342)
T ss_pred c------ccc--CcEEEec-CCccccCHHHHHHHHHcCC-----CCHHHHHHHHHcCcccc
Confidence 1 111 3688885 7789999999999999886 99999999999999964
No 9
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.96 E-value=1.5e-30 Score=191.17 Aligned_cols=100 Identities=24% Similarity=0.343 Sum_probs=90.6
Q ss_pred cccccC---CCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCC
Q 032136 2 MLQANQ---SGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQD 78 (146)
Q Consensus 2 d~E~~~---~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~ 78 (146)
++|+++ ++++||++||++|+++||+ .+++||||+|++.+|++ |+++ ++|++.|+|+|++|
T Consensus 71 ~~E~~~~~~~~~~yT~~tl~~l~~~~p~--------~~~~~iiG~D~l~~l~~---W~~~--~~i~~~~~l~~~~~---- 133 (174)
T PRK08887 71 DIEQELYAPDESVTTYALLTRLQELYPE--------ADLTFVIGPDNFLKFAK---FYKA--DEITQRWTVMACPE---- 133 (174)
T ss_pred hHHhhhccCCCCcchHHHHHHHHHHCCC--------CeEEEEEccchHHHHHH---hCCH--HHHHhhCeEEEeCC----
Confidence 578887 8899999999999999998 89999999999999995 5554 89999999998754
Q ss_pred hhhhccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCCCC
Q 032136 79 VEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 143 (146)
Q Consensus 79 ~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~~~ 143 (146)
..+||||+||++++.|+++.++||++|.+||++|+||+.+
T Consensus 134 -------------------------~~~ISST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~~~ 173 (174)
T PRK08887 134 -------------------------KVPIRSTDIRNALQNGKDISHLTTPGVARLLKEHQLYTEP 173 (174)
T ss_pred -------------------------CCCcCHHHHHHHHHcCCChhHhCCHHHHHHHHHccccCCC
Confidence 1479999999999999999999999999999999999875
No 10
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=166.26 Aligned_cols=143 Identities=43% Similarity=0.757 Sum_probs=118.6
Q ss_pred cccccCCCccchHHHHHHHHHHhhhc-c-----cCcCCCceEEEEeehhhhhhCCCCCC-CchhHHHhhhcceeEEEEec
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEA-G-----LISTESLKVMLVCGSDLLESFAIPGF-WMPEQVWTICRNFGVICIRR 74 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~-~-----~~~~~~~~~~fiiG~D~l~~l~~w~~-W~~~~~~~l~~~~~~iV~~R 74 (146)
+||+.|+.++.|+++|+|+++....+ + +-+..+.++.+++|+|.+.+|..++- |...++..|+..++++|+.|
T Consensus 84 ~weslQ~~wt~T~~vlrHhqe~~~~kr~~~~~~~~~k~~~kVmLlcG~Dliesf~~p~~~w~~~dl~~i~~~yGl~cv~r 163 (234)
T KOG3199|consen 84 GWESLQKEWTRTVKVLRHHQEELNRKRGGTELSPGTKSDVKVMLLCGGDLIESFGEPNLVWKDEDLRTILGEYGLVCVTR 163 (234)
T ss_pred hhhhccHHHhhhhHHHHHHHHHHHHHhccccccccccCCceEEEEeCchHHHhccCCCCCcchhhHHHHHhhCcEEEEec
Confidence 69999999999999999999866442 1 12334689999999999999998854 88877899999999999999
Q ss_pred CCCChhhhccchH-HhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCCCCC
Q 032136 75 EGQDVEKIISDNE-ILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNSN 144 (146)
Q Consensus 75 ~g~~~~~~~~~~~-~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~~~~ 144 (146)
.|.+...++...+ .+......+.+.++..+++||||.||+++++|++++|++|+.|++||++|+||...+
T Consensus 164 ~gsD~~~~i~~~d~i~~~~~~~l~ikn~~~~N~ISStklr~ai~r~~SVkYl~PD~Vi~yI~~h~LY~~~~ 234 (234)
T KOG3199|consen 164 EGSDVENFLSSHDIILEKRRNILHIKNEIVPNDISSTKLRQAIRRGQSVKYLTPDSVIEYIREHNLYSSES 234 (234)
T ss_pred cCCCHHHHHhccHHHHHhhcceEEEeeeeecCCcchHHHHHHHHcCCeeEeeCcHHHHHHHHHhhchhccC
Confidence 9999887665533 344444556666655668999999999999999999999999999999999998753
No 11
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.53 E-value=3e-15 Score=107.89 Aligned_cols=84 Identities=13% Similarity=0.083 Sum_probs=63.4
Q ss_pred cchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhhccchHHhh
Q 032136 11 QRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILD 90 (146)
Q Consensus 11 syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~ 90 (146)
+||++|++++++ + +|++|.|++.++ ++++ .++++.|++...
T Consensus 69 s~t~~~l~~l~~-------------~-~~i~G~d~~~~~-----------e~~~---~~~~~~r~~~~~----------- 109 (153)
T cd02163 69 GLLVDFARKHGA-------------N-VIVRGLRAVSDF-----------EYEF---QMAGMNRKLAPE----------- 109 (153)
T ss_pred chHHHHHHHcCC-------------C-EEEECCcchhhH-----------HHHH---HHHHhCCCCCCC-----------
Confidence 799999987752 2 489999987654 3343 555688987321
Q ss_pred hcCCCeEEEecCCC-ceeeHHHHHHHHHcCCCCCccChHHHHHHHHh
Q 032136 91 KNKGNIKLVDELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRE 136 (146)
Q Consensus 91 ~~~~~i~~l~~~~~-~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~ 136 (146)
...+.++. .+. .+||||.||++++.|++++++||++|.+||++
T Consensus 110 --~~~i~~~~-~~~~~~iSST~IR~~~~~g~~i~~lvP~~V~~yI~~ 153 (153)
T cd02163 110 --IETVFLMA-SPEYSFISSSLVKEIARFGGDVSGFVPPVVAKALKE 153 (153)
T ss_pred --CcEEEEeC-CCccceecHHHHHHHHHcCCChhHhCCHHHHHHHhC
Confidence 01355664 554 46999999999999999999999999999975
No 12
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.53 E-value=6e-15 Score=106.50 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=61.6
Q ss_pred cchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhhccchHHhh
Q 032136 11 QRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILD 90 (146)
Q Consensus 11 syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~ 90 (146)
+||++|+++++ .. +||+|.|++.+ | ++++++++ +.|.. ..
T Consensus 69 ~yt~dt~~~l~---~~-----------~~i~G~~~~~~------~-----~~~~~~~~---~~r~~---~~--------- 108 (155)
T TIGR01510 69 GLLVDYAKELG---AT-----------FIVRGLRAATD------F-----EYELQMAL---MNKHL---AP--------- 108 (155)
T ss_pred chHHHHHHHcC---CC-----------EEEecCcchhh------H-----HHHHHHHh---hCccc---cc---------
Confidence 79999999886 12 47888876533 4 56677666 35521 00
Q ss_pred hcCCCeEEEecCCC-ceeeHHHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 91 KNKGNIKLVDELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 91 ~~~~~i~~l~~~~~-~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
....+.++. .+. .+||||.||++++.|++++++||++|++||+++
T Consensus 109 -~~~~i~~~~-~~~~~~iSST~IR~~i~~g~~~~~lvP~~V~~YI~~~ 154 (155)
T TIGR01510 109 -EIETVFLMA-SPEYAFVSSSLVKEIASFGGDVSNLVPPAVARRLKAK 154 (155)
T ss_pred -CCcEEEEeC-CcchhhccHHHHHHHHHcCCChhHHCCHHHHHHHHHh
Confidence 011355554 444 499999999999999999999999999999985
No 13
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.43 E-value=1.1e-13 Score=100.36 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=61.8
Q ss_pred cchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhhccchHHhh
Q 032136 11 QRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILD 90 (146)
Q Consensus 11 syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~ 90 (146)
+||++|+++++ .. +|+.|.|+ |..| +.+++.+. +.|++.+..
T Consensus 71 ~~t~~~~~~~~-------------~~-~~~~gl~~------w~d~-----e~~~~~~~---~~r~~~~~~---------- 112 (159)
T PRK00168 71 GLLVDFAREVG-------------AT-VIVRGLRA------VSDF-----EYEFQMAG---MNRKLAPEI---------- 112 (159)
T ss_pred ccHHHHHHHcC-------------CC-EEEecCcc------hhhH-----HHHHHHHH---hCCCCCCCC----------
Confidence 78999987663 22 47777764 3345 56666555 788874310
Q ss_pred hcCCCeEEEecCCC-ceeeHHHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 91 KNKGNIKLVDELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 91 ~~~~~i~~l~~~~~-~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
..+.++. .+. .+||||.||++++.|++++++||++|++||+++
T Consensus 113 ---~~i~~~~-~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI~~~ 156 (159)
T PRK00168 113 ---ETVFLMP-SPEYSFISSSLVKEVARLGGDVSGFVPPAVAKALKEK 156 (159)
T ss_pred ---cEEEEeC-CCCcceecHHHHHHHHHcCCChhHHCCHHHHHHHHHH
Confidence 2345554 444 699999999999999999999999999999986
No 14
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.31 E-value=7.8e-13 Score=93.52 Aligned_cols=76 Identities=36% Similarity=0.508 Sum_probs=54.1
Q ss_pred ceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHHHHHH
Q 032136 35 LKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRD 114 (146)
Q Consensus 35 ~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~ 114 (146)
.+++|++|+|++.+|+ .|++. +++++.++++|+.|++............+......+.++......+||||+||+
T Consensus 82 ~~~~~v~g~D~~~~~~---~~~~~--~~~~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~ 156 (157)
T PF01467_consen 82 VKIYFVIGADNLRNFP---KWRDW--QEILKEVNIIVVSRGGDDPIETISDDEILEKYPLGIIFILDPPRNEISSTEIRE 156 (157)
T ss_dssp SCEEEEEECTHHEEEE---ESTTH--HHHHHHHHEEEEEHHHTTTHEEEEHCHHHHHTTCEEEEEEEGGGTTSSHHHHHH
T ss_pred cccceeccCCceeeec---CCCcH--HHHHHhCCEEEEEcCCCCccchhhhccccccccceeEEEecCCCCccCHHHHhc
Confidence 8999999999999999 56664 899999999999999765432211112233333344444335557899999998
Q ss_pred H
Q 032136 115 C 115 (146)
Q Consensus 115 ~ 115 (146)
+
T Consensus 157 ~ 157 (157)
T PF01467_consen 157 R 157 (157)
T ss_dssp H
T ss_pred C
Confidence 5
No 15
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=98.27 E-value=3.5e-06 Score=61.30 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCchhHHHhhhcceeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCc---eeeHHHHHHHHHcCCCCCccChHHH
Q 032136 54 FWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPN---QISSTRIRDCICRGLSIKYLTEDKV 130 (146)
Q Consensus 54 ~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~---~iSST~IR~~l~~g~~i~~lvp~~V 130 (146)
.|... ++..+..++++++.++- - ...+..+ ++.++. .+.. .+|||.||+.+.+|++++.+||++|
T Consensus 82 ~w~~~-v~~~vp~~div~~g~~~---~-----~~~f~~~--g~~v~~-~p~~~~~~~s~t~iR~~~~~~~~~~~~vp~~v 149 (163)
T cd02166 82 LWVSY-VESLTPPFDVVYSGNPL---V-----ARLFKEA--GYEVRR-PPMFNREEYSGTEIRRLMLGGEDWEELVPKSV 149 (163)
T ss_pred HHHHH-HHHHCCCCCEEEECchH---H-----HHhhhhc--CCeEec-CCcccCCCCCHHHHHHHHHcCCchhhcCCHHH
Confidence 45443 34445566777776431 0 0112223 333432 3333 4999999999999999999999999
Q ss_pred HHHHHhcCC
Q 032136 131 IDYIRESRL 139 (146)
Q Consensus 131 ~~YI~~~~L 139 (146)
.+||.+-+.
T Consensus 150 ~~~l~~~~~ 158 (163)
T cd02166 150 AEVIKEIGG 158 (163)
T ss_pred HHHHHHcCC
Confidence 999998765
No 16
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=98.25 E-value=1.7e-06 Score=63.17 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.8
Q ss_pred ceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcC
Q 032136 105 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 138 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~ 138 (146)
..+|||+||+.+.+|.+|+.|||++|++||++-+
T Consensus 122 ~~~S~T~IR~~i~~~~~W~~lVP~~v~~~i~~i~ 155 (165)
T TIGR01527 122 KEYSGTEIRRRMLNGEDWEHLVPKAVADVIKEIK 155 (165)
T ss_pred CcccHHHHHHHHHcCCChhhhCCHHHHHHHHHcC
Confidence 4799999999999999999999999999999854
No 17
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=98.25 E-value=8.4e-07 Score=65.64 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=32.5
Q ss_pred CCCc-eeeHHHHHHHHHc--CCCCCccChHHHHHHHHhcC
Q 032136 102 LVPN-QISSTRIRDCICR--GLSIKYLTEDKVIDYIRESR 138 (146)
Q Consensus 102 ~~~~-~iSST~IR~~l~~--g~~i~~lvp~~V~~YI~~~~ 138 (146)
.+.. +||||.||+++++ |.+++++||++|.+||++.+
T Consensus 127 ~p~~~~iSsT~IR~~i~~~~g~~~~~lvP~~V~~~I~~~~ 166 (181)
T cd02168 127 VPNYPDLNATDIRRAYFEGKEAMYRAALPAGVYDFLTAFQ 166 (181)
T ss_pred CccccccCHHHHHHHHHhcCCCChhHhCCHHHHHHHHHhC
Confidence 4444 7999999999999 67999999999999999864
No 18
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.91 E-value=9.7e-06 Score=59.63 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=31.3
Q ss_pred ceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcC
Q 032136 105 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 138 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~ 138 (146)
-++|||.||+++.+|++++.+||++|.+||.+-+
T Consensus 125 ~~iSsT~IR~~i~~g~~w~~~VPp~V~~~i~~~~ 158 (174)
T PRK01153 125 EEYSGTEIRRRMIEGDPWEELVPKSVAEVIKEID 158 (174)
T ss_pred CCCCHHHHHHHHHcCCchhhhCCHHHHHHHHHhC
Confidence 3799999999999999999999999999998754
No 19
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=97.91 E-value=2.4e-05 Score=54.45 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=50.1
Q ss_pred ccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhh
Q 032136 3 LQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKI 82 (146)
Q Consensus 3 ~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~ 82 (146)
+|..+..+++|.+.+..+...++ ..++++|.|....+. +|++...+++...+.+++++|.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~G~d~~~~~~---~~~~~~~~~~~~~~~vv~~~~~~------ 130 (143)
T cd02039 70 VDFPEVKILLAVVFILKILLKVG----------PDKVVVGEDFAFGKN---ASYNKDLKELFLDIEIVEVPRVR------ 130 (143)
T ss_pred EecChhhccCHHHHHHHHHHHcC----------CcEEEECCccccCCc---hhhhHHHHHhCCceEEEeeEecC------
Confidence 34444456777766655544443 458999999999999 57633246676777888877753
Q ss_pred ccchHHhhhcCCCeEEEecCCCceeeHHHHHHH
Q 032136 83 ISDNEILDKNKGNIKLVDELVPNQISSTRIRDC 115 (146)
Q Consensus 83 ~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~ 115 (146)
....||||.||++
T Consensus 131 --------------------~~~~iSSt~IR~~ 143 (143)
T cd02039 131 --------------------DGKKISSTLIREL 143 (143)
T ss_pred --------------------CCcEEehHHhhcC
Confidence 1247999999973
No 20
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=97.78 E-value=0.00013 Score=59.83 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=69.4
Q ss_pred CcccccCCCccchHHHHHH--HHHHhhhcccCcCCCceEEEEeehhhhhhCCC--CC-CCchhHHHhhhcce----eEEE
Q 032136 1 MMLQANQSGYQRTLTVLSR--VKNFLIEAGLISTESLKVMLVCGSDLLESFAI--PG-FWMPEQVWTICRNF----GVIC 71 (146)
Q Consensus 1 ~d~E~~~~~~syT~~tL~~--l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~--w~-~W~~~~~~~l~~~~----~~iV 71 (146)
+++|++..|++ +||.| +++.|+. . +||+|.|..---+. -. -|..++.++|++.+ ++-+
T Consensus 256 ~~~em~~agpr---eall~Aiir~nyG~--------t--h~IiG~Dhag~g~~~~~~~~Y~~~~aq~i~~~~~~~l~I~~ 322 (383)
T TIGR00339 256 LPLAMRYAGPR---EAIWHAIIRKNYGA--------T--HFIVGRDHAGPGSNSKGQDFYGPYDAQELFEKYKAELGIKI 322 (383)
T ss_pred cchHhhcCCcH---HHHHHHHHHHHCCC--------C--EEEECCCCCCCCCCCccccCCCcchHHHHHHhCccccCceE
Confidence 36788999998 99999 9999975 3 89999998655410 00 23334458888654 2222
Q ss_pred EecCCCChhhhccchHHhhhcCCCeEEEecC-----CCceeeHHHHHHHHHcCCCC-CccChHHHHHHHH
Q 032136 72 IRREGQDVEKIISDNEILDKNKGNIKLVDEL-----VPNQISSTRIRDCICRGLSI-KYLTEDKVIDYIR 135 (146)
Q Consensus 72 ~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~-----~~~~iSST~IR~~l~~g~~i-~~lvp~~V~~YI~ 135 (146)
+.-+..-.- ...+.+...... ....+|+|+||+++++|..+ ..++.++|.+-+.
T Consensus 323 v~~~~~~Yc----------~~c~~~~~~~~cph~~~~~~~~sgt~ir~~L~~G~~pP~~f~rpeV~~~L~ 382 (383)
T TIGR00339 323 VPFEHVAYC----------PDEDEYAPADQAGHTNLRTLNISGTKLRGMLREGVFPPEWFSRPEVVKILR 382 (383)
T ss_pred EecceeEEE----------cccCcEeecccCCCCccceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHh
Confidence 221110000 001122222111 23589999999999999865 5688899988764
No 21
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.50 E-value=9e-05 Score=55.46 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=30.6
Q ss_pred ceeeHHHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 105 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
..+|+|.||+++..|.+++.+||++|.++|++-
T Consensus 134 ~~~SaT~IR~~~~~g~~w~~lVP~~V~~~l~~~ 166 (196)
T PRK13793 134 DSISATPMREAYYQGKIKTDAFPKGTIQFLEEF 166 (196)
T ss_pred CccchHHHHHHHHcCCChhhhCCHHHHHHHHHh
Confidence 569999999999999999999999999999874
No 22
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=96.80 E-value=0.00093 Score=53.99 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=30.3
Q ss_pred CceeeHHHHHHHHHcCCCCCc---cChHHHHHHHHhc
Q 032136 104 PNQISSTRIRDCICRGLSIKY---LTEDKVIDYIRES 137 (146)
Q Consensus 104 ~~~iSST~IR~~l~~g~~i~~---lvp~~V~~YI~~~ 137 (146)
..++|||.||+++..|..+.. +||++|.+||.+-
T Consensus 135 ~~~~s~T~iR~~~~~~~~~~~~~~~vP~~v~~~l~~~ 171 (340)
T PRK05379 135 TEDLSATEIRDAYFEGRISSFYGWAVPAPVYAFLEAF 171 (340)
T ss_pred ccccCccHHHHHHHcCCCchhhhhcCCHHHHHHHHHh
Confidence 457999999999999998766 9999999999874
No 23
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=96.57 E-value=0.00095 Score=53.06 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=27.0
Q ss_pred ceeeHHHHHHHHHcCC--CCCccChHHHHHHH
Q 032136 105 NQISSTRIRDCICRGL--SIKYLTEDKVIDYI 134 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~--~i~~lvp~~V~~YI 134 (146)
..||||.||+.|++|. ....|||++|++++
T Consensus 266 ~~ISST~IR~~l~~G~v~~A~~lLp~~~~~~~ 297 (297)
T cd02169 266 QPISASTVRQLLKEGNLEEIAKLVPETTYEFL 297 (297)
T ss_pred cEEcHHHHHHHHHcCCHHHHHHhCCHHhHhhC
Confidence 4899999999999998 67899999999874
No 24
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=96.40 E-value=0.0049 Score=44.43 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=35.0
Q ss_pred CeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 95 NIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 95 ~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
.+++........||||.+|+-..-|.++..+||++|.+-+++.
T Consensus 115 TvFl~~s~~~~~iSSs~Vreia~~ggdvs~~VP~~V~~~l~~k 157 (159)
T COG0669 115 TVFLMPSPEYSFISSSLVREIAAFGGDVSEFVPEAVARALRAK 157 (159)
T ss_pred EEEecCCcceehhhHHHHHHHHHhCCCchhhCCHHHHHHHHHh
Confidence 3555542334799999999999999999999999999988764
No 25
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=96.11 E-value=0.0095 Score=41.57 Aligned_cols=13 Identities=38% Similarity=0.307 Sum_probs=11.4
Q ss_pred ceeeHHHHHHHHH
Q 032136 105 NQISSTRIRDCIC 117 (146)
Q Consensus 105 ~~iSST~IR~~l~ 117 (146)
..||||.||+++.
T Consensus 122 ~~vSSt~Ir~~i~ 134 (136)
T cd02170 122 EGISSSDIIKRIL 134 (136)
T ss_pred CCCcHHHHHHHHH
Confidence 4799999999985
No 26
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=95.96 E-value=0.0032 Score=46.65 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=26.4
Q ss_pred ceeeHHHHHHHHHcCC--CCCccChHHHHHHH
Q 032136 105 NQISSTRIRDCICRGL--SIKYLTEDKVIDYI 134 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~--~i~~lvp~~V~~YI 134 (146)
..||||.||+.+.+|+ .+..+||..+.+|+
T Consensus 151 ~~iSST~IR~~L~~G~v~~a~~lLP~~~~~~~ 182 (182)
T smart00764 151 QPISASTVRKLLKEGNLEELAKLVPETTLNFL 182 (182)
T ss_pred cEECHHHHHHHHHcCCHHHHHHhCCHHHHhhC
Confidence 4799999999999996 77889999998873
No 27
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=94.54 E-value=0.018 Score=42.44 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=27.3
Q ss_pred ceeeHHHHHHHHHcCC--CCCccChHHHHHHH
Q 032136 105 NQISSTRIRDCICRGL--SIKYLTEDKVIDYI 134 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~--~i~~lvp~~V~~YI 134 (146)
..||+|.+|+++++|+ .++.+||+..++|+
T Consensus 151 ~~ISAS~VR~~l~~~~~~~i~~lVP~tT~~yl 182 (182)
T PF08218_consen 151 EPISASRVRKLLKEGDFEEIKKLVPETTYDYL 182 (182)
T ss_pred cEEcHHHHHHHHHcCCHHHHHHhCCHhhHhhC
Confidence 5899999999999996 68899999999885
No 28
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=93.98 E-value=0.037 Score=44.72 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=30.0
Q ss_pred ceeeHHHHHHHHHcCC--CCCccChHHHHHHHHhcC
Q 032136 105 NQISSTRIRDCICRGL--SIKYLTEDKVIDYIRESR 138 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~--~i~~lvp~~V~~YI~~~~ 138 (146)
..+|+|.||+++++|. .++.+||+.+.+|++++.
T Consensus 295 ~~~SASaIR~~L~~~~~~~i~~~VP~~t~~~l~~~~ 330 (332)
T TIGR00124 295 GPISASTVRELLAKGDWAAWAKLVPETTLHFLQNLL 330 (332)
T ss_pred CeeCHHHHHHHHHcCCHHHHHHhCCHHHHHHHHHhh
Confidence 3699999999998874 689999999999998874
No 29
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=91.89 E-value=0.12 Score=41.23 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=30.5
Q ss_pred CceeeHHHHHHHHHcCC--CCCccChHHHHHHHHhc
Q 032136 104 PNQISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 137 (146)
Q Consensus 104 ~~~iSST~IR~~l~~g~--~i~~lvp~~V~~YI~~~ 137 (146)
...||+|.+|+.++++. .+..|||+..++|+.+|
T Consensus 301 ~~~ISAS~VR~~l~~~~~~~ia~lVP~tTl~Yl~~~ 336 (352)
T COG3053 301 EMPISASRVRQLLAKNDLEAIANLVPATTLNYLQQH 336 (352)
T ss_pred CCcccHHHHHHHHHhCCHHHHHhhCcHHHHHHHHHH
Confidence 36899999999999886 67899999999999986
No 30
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=90.15 E-value=0.42 Score=36.38 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=22.9
Q ss_pred ceeeHHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 032136 105 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 136 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i-~~lvp~~V~~YI~~ 136 (146)
..||+|+||+++++|..+ ..++.++|.+-|.+
T Consensus 181 ~~iSgt~ir~~L~~G~~pP~~f~rpeV~~~L~~ 213 (215)
T PF01747_consen 181 ISISGTEIRELLREGEEPPEWFMRPEVAAILRR 213 (215)
T ss_dssp EE--HHHHHHHHHTT----TTTS-HHHHHHHHH
T ss_pred eeeCHHHHHHHHHCcCCCCCCcCcHHHHHHHHH
Confidence 589999999999999876 56889999998875
No 31
>PRK13660 hypothetical protein; Provisional
Probab=88.49 E-value=8.3 Score=28.58 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=66.9
Q ss_pred ccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhH---HHhhhcceeEEEEecCCCC--hhhhcc
Q 032136 10 YQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQ---VWTICRNFGVICIRREGQD--VEKIIS 84 (146)
Q Consensus 10 ~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~---~~~l~~~~~~iV~~R~g~~--~~~~~~ 84 (146)
-..+.+++..||+.||+ -++..++=.= +... +|.... ...|++.|+++++--+..- +.....
T Consensus 55 d~wAaEvvl~LK~~yp~--------lkL~~~~PF~---~q~~--~W~e~~q~~y~~i~~~aD~v~~vs~~~y~~p~q~~~ 121 (182)
T PRK13660 55 ELWAAEVVLELKEEYPD--------LKLAVITPFE---EHGE--NWNEANQEKLANILKQADFVKSISKRPYESPAQFRQ 121 (182)
T ss_pred HHHHHHHHHHHHhhCCC--------eEEEEEeCcc---chhh--cCCHHHHHHHHHHHHhCCEEEEecCCCCCChHHHHH
Confidence 34678899999999988 6777666433 3333 787642 4578899999988766532 322211
Q ss_pred chHHhhhcCCC-eEEEecCCCceeeHH--HHHHHHHc----CCCCCccChHHHHHHHHh
Q 032136 85 DNEILDKNKGN-IKLVDELVPNQISST--RIRDCICR----GLSIKYLTEDKVIDYIRE 136 (146)
Q Consensus 85 ~~~~l~~~~~~-i~~l~~~~~~~iSST--~IR~~l~~----g~~i~~lvp~~V~~YI~~ 136 (146)
-...+-.+... +.+.+ .... ++| .+|.+.+. |..+..+-|+...+.+.+
T Consensus 122 rn~fmv~~sd~~i~~YD-~e~~--Ggt~y~~~~A~k~~~~~~y~i~~I~~~~l~~~~~~ 177 (182)
T PRK13660 122 YNQFMLEHTDGALLVYD-EENE--GSPKYFYEAAKKKQEKEDYPLDLITFDDLQEIAEE 177 (182)
T ss_pred HHHHHHHccCeEEEEEc-CCCC--CChHHHHHHHHHhhhccCceEEEeCHHHHHHHHHH
Confidence 12222233333 33444 2222 444 46666666 788888888888776653
No 32
>PRK13670 hypothetical protein; Provisional
Probab=87.93 E-value=0.8 Score=37.86 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=27.3
Q ss_pred eeeHHHHHHHHHcC--CCCCccChHHHHHHHHh
Q 032136 106 QISSTRIRDCICRG--LSIKYLTEDKVIDYIRE 136 (146)
Q Consensus 106 ~iSST~IR~~l~~g--~~i~~lvp~~V~~YI~~ 136 (146)
-+|+|.||+.+.+| ..+..+||+...+++.+
T Consensus 200 ~aSASaIR~~L~~~~~~~i~~~vP~~t~~il~~ 232 (388)
T PRK13670 200 FASATAIRKALLEKDLDELKKFVPKATLELLKR 232 (388)
T ss_pred ChhHHHHHHHHHhCCHHHHHHhCCHHHHHHHHh
Confidence 59999999999876 46889999999999876
No 33
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=87.75 E-value=0.39 Score=35.16 Aligned_cols=16 Identities=44% Similarity=0.736 Sum_probs=14.7
Q ss_pred ceeeHHHHHHHHHcCC
Q 032136 105 NQISSTRIRDCICRGL 120 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~ 120 (146)
..||||.||+.+++|+
T Consensus 144 ~~iSST~IR~~i~~G~ 159 (180)
T cd02064 144 ERVSSTRIREALAEGD 159 (180)
T ss_pred cEEcHHHHHHHHHhCC
Confidence 5899999999999985
No 34
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=86.81 E-value=0.76 Score=33.96 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.0
Q ss_pred CCCCCccChHHHHHHHHhcCCC
Q 032136 119 GLSIKYLTEDKVIDYIRESRLY 140 (146)
Q Consensus 119 g~~i~~lvp~~V~~YI~~~~LY 140 (146)
+...+.-||++|++||++|++=
T Consensus 92 ddK~k~~LPddVI~YmrdNgI~ 113 (196)
T PRK15364 92 DAKTKEEVPEDVIKYMRDNGIL 113 (196)
T ss_pred CCcccccCCHHHHHHHHHcCce
Confidence 4456678999999999999863
No 35
>PRK07143 hypothetical protein; Provisional
Probab=86.80 E-value=0.43 Score=37.70 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=22.1
Q ss_pred HHhhhcCCCeEEEec--CCCceeeHHHHHHHHHcCC
Q 032136 87 EILDKNKGNIKLVDE--LVPNQISSTRIRDCICRGL 120 (146)
Q Consensus 87 ~~l~~~~~~i~~l~~--~~~~~iSST~IR~~l~~g~ 120 (146)
..|+++...+..++. .....||||.||+.|++|.
T Consensus 128 ~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G~ 163 (279)
T PRK07143 128 DDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFGD 163 (279)
T ss_pred HHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcCC
Confidence 345554335555531 1225899999999999984
No 36
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=84.20 E-value=1.5 Score=35.86 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=27.8
Q ss_pred ceeeHHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 032136 105 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 136 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i-~~lvp~~V~~YI~~ 136 (146)
..+|+|+||++++.|..+ ..++.++|.+-|.+
T Consensus 320 ~~iSgt~iR~~L~~G~~pP~~f~rpeV~~~L~~ 352 (353)
T cd00517 320 LNISGTKLRKMLREGEKPPEWFMRPEVAKVLRE 352 (353)
T ss_pred eeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhh
Confidence 589999999999999865 56889999988865
No 37
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=83.92 E-value=0.7 Score=36.65 Aligned_cols=16 Identities=38% Similarity=0.439 Sum_probs=14.3
Q ss_pred ceeeHHHHHHHHHcCC
Q 032136 105 NQISSTRIRDCICRGL 120 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~ 120 (146)
..||||.||+.|++|.
T Consensus 142 ~~ISST~IR~~l~~G~ 157 (288)
T TIGR00083 142 IRISSSAIRQALKNGD 157 (288)
T ss_pred CeECHHHHHHHHHcCC
Confidence 5799999999999984
No 38
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=82.73 E-value=1.4 Score=32.38 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=30.4
Q ss_pred CceeeHHHHHHHHHcCCC-CCccChHHHHHHHHh
Q 032136 104 PNQISSTRIRDCICRGLS-IKYLTEDKVIDYIRE 136 (146)
Q Consensus 104 ~~~iSST~IR~~l~~g~~-i~~lvp~~V~~YI~~ 136 (146)
..+.|.|.||+.+..|.. ++.++|+.|..||.+
T Consensus 126 ~~e~~~t~ir~~~~~~e~~w~~~~~~~v~~~i~e 159 (172)
T COG1056 126 RWEYSGTAIRRKMLGGEDVWEDLVPTFVAESITE 159 (172)
T ss_pred ccccccchHHHHhhcCccchhhccCchHhHHHHh
Confidence 358999999999999988 999999999999986
No 39
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=82.16 E-value=1.9 Score=35.69 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=28.5
Q ss_pred ceeeHHHHHHHHHcCCCC-CccChHHHHHHHHhc
Q 032136 105 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRES 137 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i-~~lvp~~V~~YI~~~ 137 (146)
..||+|+||++++.|..+ ..++.++|.+-|.+.
T Consensus 347 ~~iSgt~iR~~L~~G~~pP~~f~rpeV~~iL~~~ 380 (391)
T PRK04149 347 VHLSGTKVREMLREGEKPPPEFSRPEVAEVLIKG 380 (391)
T ss_pred EeeCHHHHHHHHHCcCCCCCccCcHHHHHHHHHH
Confidence 589999999999999865 568899999888764
No 40
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=80.31 E-value=2.4 Score=29.88 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=19.8
Q ss_pred hhhcCCCeEEEecCCCceeeHHHHHHHHH
Q 032136 89 LDKNKGNIKLVDELVPNQISSTRIRDCIC 117 (146)
Q Consensus 89 l~~~~~~i~~l~~~~~~~iSST~IR~~l~ 117 (146)
+.++++.+.+++ . ...||||.||+++.
T Consensus 117 ~~~~g~~v~~~~-~-~~~iSSs~Ir~ri~ 143 (144)
T TIGR02199 117 VESYGGQVVLLP-F-VEGRSTTAIIEKIL 143 (144)
T ss_pred HHHcCCEEEEEe-C-CCCcCHHHHHHHHh
Confidence 445566777775 2 24899999999985
No 41
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=77.93 E-value=1.4 Score=35.29 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=19.2
Q ss_pred CCCeEEEecC--CCceeeHHHHHHHHHcCC
Q 032136 93 KGNIKLVDEL--VPNQISSTRIRDCICRGL 120 (146)
Q Consensus 93 ~~~i~~l~~~--~~~~iSST~IR~~l~~g~ 120 (146)
+..+.+++.. ....||||.||+.+++|.
T Consensus 145 g~~v~~v~~~~~~~~~ISST~IR~~I~~G~ 174 (305)
T PRK05627 145 GFEVTIVPEVKEDGERVSSTAIRQALAEGD 174 (305)
T ss_pred CcEEEEeccEecCCCcCchHHHHHHHHcCC
Confidence 3445555311 125899999999999984
No 42
>PRK13671 hypothetical protein; Provisional
Probab=77.17 E-value=2.2 Score=34.08 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=25.5
Q ss_pred eeeHHHHHHHHHcCCCCCccChHHHHHHHH
Q 032136 106 QISSTRIRDCICRGLSIKYLTEDKVIDYIR 135 (146)
Q Consensus 106 ~iSST~IR~~l~~g~~i~~lvp~~V~~YI~ 135 (146)
-.|+|.||+.+.+|..+...||+...+...
T Consensus 195 ~aSAtaIR~~l~~~~~~~~~~p~~~~~~l~ 224 (298)
T PRK13671 195 YASATYLRKMIFENKDISKYSPMKFKKPPK 224 (298)
T ss_pred cccHHHHHHHHhccchHHHhCCHHHHHHHH
Confidence 389999999998777888899999877654
No 43
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=73.65 E-value=1.8 Score=27.19 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.1
Q ss_pred hHHHHHHHHhcCCCCCCC
Q 032136 127 EDKVIDYIRESRLYLNSN 144 (146)
Q Consensus 127 p~~V~~YI~~~~LY~~~~ 144 (146)
-..+++||++|+|+...+
T Consensus 26 ~~~lw~YIk~~~L~dp~~ 43 (76)
T PF02201_consen 26 VKRLWQYIKENNLQDPKD 43 (76)
T ss_dssp HHHHHHHHHHTTSBESSS
T ss_pred HHHHHHHHHHhcCCCccc
Confidence 346789999999996543
No 44
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=73.60 E-value=2 Score=29.43 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=18.5
Q ss_pred HhhhcCCCeEEEecCCCceeeHHHHHHHHHc
Q 032136 88 ILDKNKGNIKLVDELVPNQISSTRIRDCICR 118 (146)
Q Consensus 88 ~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~ 118 (146)
.++++ +.+.+++ ....||||.||+.+++
T Consensus 101 ~l~~~-~~v~~~~--~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 101 FLKEY-CEVVYLP--RTKGISSTQLKEMLKK 128 (129)
T ss_pred HHHhC-cEEEEeC--CCCCcChHHHHHHHhh
Confidence 34444 3455554 2467999999999863
No 45
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=72.60 E-value=4.4 Score=35.21 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=27.5
Q ss_pred ceeeHHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 032136 105 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 136 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i-~~lvp~~V~~YI~~ 136 (146)
..+|+|+||++++.|..+ ..++.++|.+-+.+
T Consensus 351 ~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~ 383 (568)
T PRK05537 351 LTISGTELRRRLREGLEIPEWFSFPEVVAELRR 383 (568)
T ss_pred eccCHHHHHHHHHCCCCCChhhcHHHHHHHHHH
Confidence 589999999999999865 56899999996554
No 46
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=72.08 E-value=2.5 Score=33.84 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=13.5
Q ss_pred eeeHHHHHHHHHcCC
Q 032136 106 QISSTRIRDCICRGL 120 (146)
Q Consensus 106 ~iSST~IR~~l~~g~ 120 (146)
.||||.||+++++|.
T Consensus 160 ~iSSt~IR~~L~~gd 174 (304)
T COG0196 160 RISSTAIRQALREGD 174 (304)
T ss_pred EEchHHHHHHHhcCC
Confidence 599999999999874
No 47
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=71.74 E-value=5.3 Score=32.95 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=27.5
Q ss_pred ceeeHHHHHHHHHcCCC-CCccChHHHHHHHHhc
Q 032136 105 NQISSTRIRDCICRGLS-IKYLTEDKVIDYIRES 137 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~-i~~lvp~~V~~YI~~~ 137 (146)
..+|+|.+|++|++|.. .+.+.=++|.+-|.+.
T Consensus 343 ~~~SGt~lR~~Lr~G~~PP~~f~RPEV~~vl~k~ 376 (397)
T COG2046 343 LHISGTKLREMLRAGVKPPEEFSRPEVADVLRKS 376 (397)
T ss_pred EEEccHHHHHHHHcCCCCCcccccHHHHHHHHHh
Confidence 58999999999999974 4567778999888763
No 48
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=66.43 E-value=8.5 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=17.1
Q ss_pred eEEEecCCCceeeHHHHHHHHHcCC
Q 032136 96 IKLVDELVPNQISSTRIRDCICRGL 120 (146)
Q Consensus 96 i~~l~~~~~~~iSST~IR~~l~~g~ 120 (146)
++++.......||||.||+..+-|+
T Consensus 116 vfl~~~~~~~~iSSs~vre~~~~~~ 140 (140)
T PRK13964 116 ILIIPDYDKIEYSSTLLRHKKFLKK 140 (140)
T ss_pred EEeecCCCCCEEeHHHHHHHHHccC
Confidence 4444323347999999999877653
No 49
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=66.37 E-value=2.5 Score=28.87 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=13.6
Q ss_pred CeEEEecCCCceeeHHHHHHHH
Q 032136 95 NIKLVDELVPNQISSTRIRDCI 116 (146)
Q Consensus 95 ~i~~l~~~~~~~iSST~IR~~l 116 (146)
.+.+++ ....||||.||+++
T Consensus 106 ~v~~v~--~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 106 KVVYLP--RTEGVSTTKIKKEI 125 (125)
T ss_pred EEEEeC--CCCCccHHHHHhhC
Confidence 455554 23569999999863
No 50
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=65.77 E-value=7.5 Score=28.09 Aligned_cols=13 Identities=54% Similarity=0.483 Sum_probs=10.5
Q ss_pred ceeeHHHHHHHHH
Q 032136 105 NQISSTRIRDCIC 117 (146)
Q Consensus 105 ~~iSST~IR~~l~ 117 (146)
.+||||.||+-.-
T Consensus 135 ~~iSSTrIrrgeI 147 (158)
T COG1019 135 KPISSTRIRRGEI 147 (158)
T ss_pred Cccchhhhhhhcc
Confidence 5999999997543
No 51
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=65.49 E-value=19 Score=26.53 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=54.7
Q ss_pred ccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchh---HHHhhhcceeEEEEecCC--CChhhhcc
Q 032136 10 YQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPE---QVWTICRNFGVICIRREG--QDVEKIIS 84 (146)
Q Consensus 10 ~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~---~~~~l~~~~~~iV~~R~g--~~~~~~~~ 84 (146)
.....+++..||+.||+ -++..++=. .+... +|... ....|++.|+++++--+. ..+.....
T Consensus 55 D~waae~vl~LK~~yp~--------ikL~~v~Pf---~~q~~--~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~ 121 (177)
T PF06908_consen 55 DLWAAEVVLELKKEYPE--------IKLALVLPF---ENQGN--NWNEANQERYQSILEQADFVVVVSERPYYSPGQLQK 121 (177)
T ss_dssp HHHHHHHHHTTTTT-TT---------EEEEEESS---B-TTT--TS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHH
T ss_pred HHHHHHHHHHHHhhhhh--------eEEEEEEcc---cchhh--cCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHH
Confidence 34678888899999988 788777754 33333 78764 247789999998887553 33333211
Q ss_pred chHHhhhcCCCeEE-EecCCCceeeHHHHHHHHHc----CCCCCccChHHHHHHHH
Q 032136 85 DNEILDKNKGNIKL-VDELVPNQISSTRIRDCICR----GLSIKYLTEDKVIDYIR 135 (146)
Q Consensus 85 ~~~~l~~~~~~i~~-l~~~~~~~iSST~IR~~l~~----g~~i~~lvp~~V~~YI~ 135 (146)
-+..+-.+...+.. .+ .....=....+|.+.+. |..+..+-|+...+...
T Consensus 122 rn~fMvdhsd~~iavyD-~~~~G~t~~~~~~a~~~~~~~~y~i~~I~~d~l~~~~~ 176 (177)
T PF06908_consen 122 RNRFMVDHSDGLIAVYD-GEPEGGTKYTVRAAKKYQEQKGYPIDLIDPDDLQEIAE 176 (177)
T ss_dssp HHHHHHHHSSEEEEE---TTT--TTHHHHHHHHHHHHHH---EEEE-HHHHHHHHH
T ss_pred HhHHHHhCCCeEEEEEe-CCCCCcchHHHHHHHHHhhccCCeEEEecHHHHHHHhh
Confidence 12222223334333 33 22221223335544433 45676666766665543
No 52
>PLN02388 phosphopantetheine adenylyltransferase
Probab=64.47 E-value=3.9 Score=30.17 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=12.6
Q ss_pred CceeeHHHHHHHHHc
Q 032136 104 PNQISSTRIRDCICR 118 (146)
Q Consensus 104 ~~~iSST~IR~~l~~ 118 (146)
...||||.||++..+
T Consensus 152 ~~kiSST~iR~~~~~ 166 (177)
T PLN02388 152 GNKLSSTTLRRLEAE 166 (177)
T ss_pred CCccCHHHHHHHHHH
Confidence 358999999998765
No 53
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=64.04 E-value=2.1 Score=30.81 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=16.3
Q ss_pred CceeeHHHHHHHHHcCCCCCccChHHH
Q 032136 104 PNQISSTRIRDCICRGLSIKYLTEDKV 130 (146)
Q Consensus 104 ~~~iSST~IR~~l~~g~~i~~lvp~~V 130 (146)
..+||||+||+....- ..++|+.|
T Consensus 134 ~~~iSaT~IR~~p~~~---w~~i~~~v 157 (158)
T cd02167 134 DISVSATQIRENPFRY---WYHIPREV 157 (158)
T ss_pred cCCcCHHHHHhCHHHH---HHhccccc
Confidence 4689999999976542 23566554
No 54
>PF03433 EspA: EspA-like secreted protein ; InterPro: IPR005095 EspA is the prototypical member of this family. EspA, together with EspB, EspD and Tir are exported by a type III secretion system. These proteins are essential for attaching and effacing lesion formation. EspA is a structural protein and a major component of a large, transiently expressed, filamentous surface organelle which forms a direct link between the bacterium and the host cell [, ].; PDB: 1XOU_A.
Probab=62.95 E-value=2.4 Score=31.53 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=0.0
Q ss_pred CCccChHHHHHHHHhcCC
Q 032136 122 IKYLTEDKVIDYIRESRL 139 (146)
Q Consensus 122 i~~lvp~~V~~YI~~~~L 139 (146)
.+.-||++|++||++||+
T Consensus 95 ~k~~lp~dVi~Ym~~ngI 112 (188)
T PF03433_consen 95 AKAPLPDDVIDYMRDNGI 112 (188)
T ss_dssp ------------------
T ss_pred ccccCCHHHHHHHHHcCC
Confidence 345699999999999987
No 55
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]
Probab=61.28 E-value=5.5 Score=30.87 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=17.5
Q ss_pred CccChHHHHHHHHhcCCCCCCC
Q 032136 123 KYLTEDKVIDYIRESRLYLNSN 144 (146)
Q Consensus 123 ~~lvp~~V~~YI~~~~LY~~~~ 144 (146)
+.-|-..|++||++|+|+-..+
T Consensus 121 R~~vvk~iw~YIke~nLqDP~n 142 (240)
T KOG1946|consen 121 RTDVVKKIWAYIKEHNLQDPKN 142 (240)
T ss_pred HHHHHHHHHHHHHHhccCCccc
Confidence 4456788999999999986554
No 56
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=58.91 E-value=9.4 Score=23.96 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=13.7
Q ss_pred ChHHHHHHHHhcCCCCCC
Q 032136 126 TEDKVIDYIRESRLYLNS 143 (146)
Q Consensus 126 vp~~V~~YI~~~~LY~~~ 143 (146)
|-..+++||++|+|....
T Consensus 25 v~~~lw~YIk~n~L~d~~ 42 (77)
T smart00151 25 IIKRLWEYIKEHNLQDPQ 42 (77)
T ss_pred HHHHHHHHHHHhcccCCc
Confidence 445789999999998643
No 57
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=57.05 E-value=3.5 Score=34.09 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred eeeHHHHHHHH--HcCCCCCccChHHHHHHH
Q 032136 106 QISSTRIRDCI--CRGLSIKYLTEDKVIDYI 134 (146)
Q Consensus 106 ~iSST~IR~~l--~~g~~i~~lvp~~V~~YI 134 (146)
-.|+|.||+.+ ..+..+..+||+.+.+.+
T Consensus 201 ~aSAtaIR~~l~~~~~~~~~~~vP~~~~~~l 231 (388)
T PF05636_consen 201 FASATAIRKALSNNDLEEISNYVPKSSYEIL 231 (388)
T ss_dssp -------------------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 45999999999 556678899999999888
No 58
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=55.86 E-value=16 Score=24.64 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=22.7
Q ss_pred eeeHHHHHHHHHcCCCCCccChHHHHHHHHh
Q 032136 106 QISSTRIRDCICRGLSIKYLTEDKVIDYIRE 136 (146)
Q Consensus 106 ~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~ 136 (146)
+..-..||..++.......-+|++|++.+++
T Consensus 77 e~~~e~ik~~lk~d~Ca~~~~P~~V~d~L~~ 107 (110)
T PF10828_consen 77 EERRESIKTALKDDPCANTAVPDAVIDSLRR 107 (110)
T ss_pred HHHHHHHHHHHccCccccCCCCHHHHHHHHH
Confidence 4444566666766665667899999999986
No 59
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=54.00 E-value=5.2 Score=24.10 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=31.3
Q ss_pred CceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCCCC
Q 032136 104 PNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 143 (146)
Q Consensus 104 ~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~~~ 143 (146)
..+.|.-++|+.+.....-..-...+|.+|+.++|-|...
T Consensus 24 ~~E~~np~lR~~l~~~~~~~~~~~~~l~~~m~~kGwY~~~ 63 (64)
T PF07875_consen 24 ALECANPELRQILQQILNECQQMQYELFNYMNQKGWYQPP 63 (64)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 3578888999988765443445778999999999999764
No 60
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=50.85 E-value=17 Score=31.32 Aligned_cols=24 Identities=4% Similarity=0.249 Sum_probs=21.6
Q ss_pred ccccCCCccchHHHHHHHHHHhhh
Q 032136 3 LQANQSGYQRTLTVLSRVKNFLIE 26 (146)
Q Consensus 3 ~E~~~~~~syT~~tL~~l~~~~~~ 26 (146)
||-.-+|..|.+|.++|++++|.+
T Consensus 123 ~~~~e~gF~yA~DLVr~Irs~YGD 146 (590)
T KOG0564|consen 123 WVEEEGGFRYAVDLVRYIRSKYGD 146 (590)
T ss_pred cccccCCchhHHHHHHHHHHHhCC
Confidence 666777999999999999999987
No 61
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=46.83 E-value=13 Score=30.47 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=28.3
Q ss_pred ceeeHHHHHHHHHcCC--CCCccChHHHHHHHHhc
Q 032136 105 NQISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 137 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~--~i~~lvp~~V~~YI~~~ 137 (146)
.-.|+|.||+.+..|. .+..+||+.+.+-|.++
T Consensus 203 ~~aSaT~IR~~i~~~~~~~~~~~vP~~t~~~l~~~ 237 (358)
T COG1323 203 EGASATAIRKAIFSGDLERIANMVPKETLEILSSK 237 (358)
T ss_pred cccchHHHHHHHhcchHHHHHhhCCHHHHHHHHhc
Confidence 4789999999999876 46789999999999865
No 62
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=46.74 E-value=7.4 Score=32.27 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=18.5
Q ss_pred ceeeHHHHHHHHHcCCCCCccChHHHHHH
Q 032136 105 NQISSTRIRDCICRGLSIKYLTEDKVIDY 133 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i~~lvp~~V~~Y 133 (146)
.+||||+||+....- ..++|+.|..+
T Consensus 192 ~~iSaT~IR~~p~~~---w~~i~~~vr~~ 217 (399)
T PRK08099 192 MNISGTQIRENPFRY---WEYIPTEVRPF 217 (399)
T ss_pred CCcCHHHHhhCHHHH---HHhcCHHHhhC
Confidence 689999999876442 24577777655
No 63
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=45.31 E-value=17 Score=24.53 Aligned_cols=64 Identities=13% Similarity=0.220 Sum_probs=35.3
Q ss_pred ceEEEEeehhhhhhCCCCCCCchhHHHhhh--cceeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHHHH
Q 032136 35 LKVMLVCGSDLLESFAIPGFWMPEQVWTIC--RNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRI 112 (146)
Q Consensus 35 ~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~--~~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~I 112 (146)
-.-+||||.|.... .|-..+.++|- .-+++||=-....... .+++... ..+..++|-.++
T Consensus 24 ~~p~FlIGdD~~S~-----~WL~~~~~~L~~l~AvGlVVnV~t~~~l~-------~Lr~lap------gl~l~P~sgddL 85 (105)
T TIGR03765 24 LTPLFLIGDDPASR-----QWLQQNAAALKSLGAVGLVVNVETAAALQ-------RLRALAP------GLPLLPVSGDDL 85 (105)
T ss_pred CCceEEEeCCHHHH-----HHHHHHHHHHHHCCCeEEEEecCCHHHHH-------HHHHHcC------CCcccCCCHHHH
Confidence 34689999999876 58664435553 3456776443211111 1222111 234567777777
Q ss_pred HHHH
Q 032136 113 RDCI 116 (146)
Q Consensus 113 R~~l 116 (146)
=+++
T Consensus 86 a~rL 89 (105)
T TIGR03765 86 AERL 89 (105)
T ss_pred HHHh
Confidence 6666
No 64
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=44.98 E-value=13 Score=26.60 Aligned_cols=14 Identities=50% Similarity=0.442 Sum_probs=11.4
Q ss_pred ceeeHHHHHHHHHc
Q 032136 105 NQISSTRIRDCICR 118 (146)
Q Consensus 105 ~~iSST~IR~~l~~ 118 (146)
..+|||.||+.+-+
T Consensus 131 ~~~SSt~Ir~~~~~ 144 (153)
T PRK00777 131 KPISSTRIRRGEID 144 (153)
T ss_pred CeeeHHHHHHhhhc
Confidence 56999999987654
No 65
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=40.93 E-value=20 Score=25.51 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=35.9
Q ss_pred ceEEEEeehhhhhhCCCCCCCchhHHHhhhc--ceeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHHHH
Q 032136 35 LKVMLVCGSDLLESFAIPGFWMPEQVWTICR--NFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRI 112 (146)
Q Consensus 35 ~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~--~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~I 112 (146)
-.-+||||.|.+.. .|-....++|-+ -+++||=-...... ..+++.... .+..++|..++
T Consensus 62 ~~plFlVGdD~~S~-----~WL~~~~~~L~~l~AvGlVVNV~t~~~L-------~~Lr~lapg------l~l~P~sgddL 123 (142)
T PF11072_consen 62 LQPLFLVGDDPLSR-----QWLQQNAEELKQLGAVGLVVNVATEAAL-------QRLRQLAPG------LPLLPVSGDDL 123 (142)
T ss_pred CCCEEEEcCCHHHH-----HHHHHHHHHHHHCCCeEEEEecCCHHHH-------HHHHHHcCC------CeecCCCHHHH
Confidence 46789999999877 586543355533 35676643321111 112222222 33456777777
Q ss_pred HHHHH
Q 032136 113 RDCIC 117 (146)
Q Consensus 113 R~~l~ 117 (146)
=+++.
T Consensus 124 A~rL~ 128 (142)
T PF11072_consen 124 ARRLG 128 (142)
T ss_pred HHHhC
Confidence 76663
No 66
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=40.17 E-value=36 Score=26.05 Aligned_cols=31 Identities=13% Similarity=0.345 Sum_probs=26.1
Q ss_pred CceeeHHHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 104 PNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 104 ~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
--.|++|++|+++.+ .-+.|++.+.+.|..+
T Consensus 138 SG~I~~sEL~~Al~~---~Gy~Lspq~~~~lv~k 168 (221)
T KOG0037|consen 138 SGTIDSSELRQALTQ---LGYRLSPQFYNLLVRK 168 (221)
T ss_pred CCcccHHHHHHHHHH---cCcCCCHHHHHHHHHH
Confidence 468999999999975 4588999999998764
No 67
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=39.63 E-value=1.4e+02 Score=21.38 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=37.8
Q ss_pred HHhhhcceeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCC
Q 032136 60 VWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 120 (146)
Q Consensus 60 ~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~ 120 (146)
++++++.+++|++.=|..+.....-..+.+.+.+.+..+++...-.-|--..+=+++++|+
T Consensus 85 l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 85 LDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGK 145 (178)
T ss_dssp HHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTS
T ss_pred hhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhcc
Confidence 6889999999999877543222112344566667777888633334566667777888775
No 68
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=39.56 E-value=10 Score=26.79 Aligned_cols=11 Identities=64% Similarity=0.752 Sum_probs=9.5
Q ss_pred CceeeHHHHHH
Q 032136 104 PNQISSTRIRD 114 (146)
Q Consensus 104 ~~~iSST~IR~ 114 (146)
...||||.||+
T Consensus 132 ~~kiSST~iR~ 142 (143)
T cd02164 132 GEKISSTRIRR 142 (143)
T ss_pred CCeecchhhhC
Confidence 46899999996
No 69
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=37.62 E-value=53 Score=26.62 Aligned_cols=13 Identities=46% Similarity=0.235 Sum_probs=10.1
Q ss_pred CceeeHHHHHHHH
Q 032136 104 PNQISSTRIRDCI 116 (146)
Q Consensus 104 ~~~iSST~IR~~l 116 (146)
...||||.||+.-
T Consensus 127 ~~~iSSTrIr~~e 139 (322)
T PRK01170 127 LFPISSTRIINGE 139 (322)
T ss_pred CCcccHHHHhhhh
Confidence 3579999999743
No 70
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=37.29 E-value=23 Score=22.76 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.4
Q ss_pred ccccCCCccchHHHH-HHHHHHhhh
Q 032136 3 LQANQSGYQRTLTVL-SRVKNFLIE 26 (146)
Q Consensus 3 ~E~~~~~~syT~~tL-~~l~~~~~~ 26 (146)
++.++.+.+=|.++| ++|.+.||+
T Consensus 21 ~dln~~~~~at~E~l~~~L~~~yp~ 45 (80)
T PF10264_consen 21 SDLNAAGQPATQETLREHLRKHYPG 45 (80)
T ss_pred HHHhccCCcchHHHHHHHHHHhCCC
Confidence 467788999999997 699999986
No 71
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=36.94 E-value=50 Score=23.07 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 110 TRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 110 T~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
.+||+++++|++ .++|.+|+.+.
T Consensus 64 ~~Vr~~i~~G~s-----d~eI~~~~v~R 86 (126)
T PRK10144 64 HQVYSMVAEGKS-----EVEIIGWMTER 86 (126)
T ss_pred HHHHHHHHcCCC-----HHHHHHHHHHh
Confidence 467888888874 78999999875
No 72
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=36.91 E-value=49 Score=23.08 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 110 TRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 110 T~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
.+||+++++|++ .++|.+|+.+.
T Consensus 64 ~~Vr~~i~~G~S-----d~eI~~~~v~R 86 (126)
T TIGR03147 64 HEVYSMVNEGKS-----NQQIIDFMTAR 86 (126)
T ss_pred HHHHHHHHcCCC-----HHHHHHHHHHh
Confidence 467788888874 78999999875
No 73
>KOG2406 consensus MADS box transcription factor [Transcription]
Probab=36.85 E-value=42 Score=29.05 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHhhhccc-CcCCCceEEEEeehhhhhhCCCCCCCchhH---HHhhhcceeEEEEecC
Q 032136 12 RTLTVLSRVKNFLIEAGL-ISTESLKVMLVCGSDLLESFAIPGFWMPEQ---VWTICRNFGVICIRRE 75 (146)
Q Consensus 12 yT~~tL~~l~~~~~~~~~-~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~---~~~l~~~~~~iV~~R~ 75 (146)
|-+-.|+.+-+.+|.... +.+.+.+|.+|=.+|.|.. |-+++ -.-.+..-++++++|.
T Consensus 97 fiVylL~eiska~~s~~aRi~D~DGEFLLIEAA~~LPk------Wldpens~nRVfi~gGel~Ilp~~ 158 (635)
T KOG2406|consen 97 FIVYLLREISKAFPSAFARIIDEDGEFLLIEAADSLPK------WLDPENSDNRVFIHGGELIILPPE 158 (635)
T ss_pred hhHHHHHHHHHhcCcceEEEEcCCCCEEeehhhhhccc------ccCcccccceEEEECCEEEEeccc
Confidence 456678888888876321 3556689989988887654 65531 0123344466677543
No 74
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=36.63 E-value=47 Score=24.85 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=64.9
Q ss_pred ccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhh
Q 032136 3 LQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKI 82 (146)
Q Consensus 3 ~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~ 82 (146)
+|+.-.++ ...+.++.++++||+ +++|+=++.+..+ =+ +-+-.-++|+|.+ +.+.+-.
T Consensus 37 iEiT~~t~-~a~~~I~~l~~~~p~------------~~vGAGTV~~~e~---a~----~a~~aGA~FivSP--~~~~~v~ 94 (196)
T PF01081_consen 37 IEITLRTP-NALEAIEALRKEFPD------------LLVGAGTVLTAEQ---AE----AAIAAGAQFIVSP--GFDPEVI 94 (196)
T ss_dssp EEEETTST-THHHHHHHHHHHHTT------------SEEEEES--SHHH---HH----HHHHHT-SEEEES--S--HHHH
T ss_pred EEEecCCc-cHHHHHHHHHHHCCC------------CeeEEEeccCHHH---HH----HHHHcCCCEEECC--CCCHHHH
Confidence 35555443 567999999999986 6789988888762 21 4456778999986 4443321
Q ss_pred ccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHH---HHHHHh
Q 032136 83 ISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDYIRE 136 (146)
Q Consensus 83 ~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V---~~YI~~ 136 (146)
.... ..++-+++ --.+.|+|.++++.|-++-.+-|..+ .+||+.
T Consensus 95 ----~~~~--~~~i~~iP----G~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~ 141 (196)
T PF01081_consen 95 ----EYAR--EYGIPYIP----GVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKA 141 (196)
T ss_dssp ----HHHH--HHTSEEEE----EESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHH
T ss_pred ----HHHH--HcCCcccC----CcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHH
Confidence 0011 12455554 25788999999999988878888777 678774
No 75
>PF12728 HTH_17: Helix-turn-helix domain
Probab=35.37 E-value=58 Score=18.08 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=23.8
Q ss_pred CceeeHHHHHHHHHcCCCC-------CccChHHHHHHHHhc
Q 032136 104 PNQISSTRIRDCICRGLSI-------KYLTEDKVIDYIRES 137 (146)
Q Consensus 104 ~~~iSST~IR~~l~~g~~i-------~~lvp~~V~~YI~~~ 137 (146)
.+.||-+.|++.+++|.-. ...-.++|.+||+++
T Consensus 10 ~l~is~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 10 LLGISRSTVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HHCcCHHHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 3578889999999887421 223457788888775
No 76
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=32.86 E-value=86 Score=25.24 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=61.3
Q ss_pred CcccccCCCccchHHHHHHH-HHHhhh----------cc--cCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcce
Q 032136 1 MMLQANQSGYQRTLTVLSRV-KNFLIE----------AG--LISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNF 67 (146)
Q Consensus 1 ~d~E~~~~~~syT~~tL~~l-~~~~~~----------~~--~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~ 67 (146)
||||..-....+|.++|+.. ++.|.. .+ ..+--+.+++||--.+.....++- .=+.-+ .+|++..
T Consensus 108 WDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~y~~~~~~Lp~~i~FitsqeL~~~YP~l-~~keRE-~~i~ke~ 185 (309)
T cd00645 108 WDWEKVISKGERNLETLKETVNKIYKAIKETELEVNEKYPQLEPILPEEITFITSQELEDRYPDL-TPKERE-DAICKEH 185 (309)
T ss_pred ccHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhcCCCceEEecHHHHHHHCCCC-CHHHHH-HHHHHHh
Confidence 68998877777888877632 333321 11 112225689999888777766631 112221 5789988
Q ss_pred eEEEEecCCCChhhhccc---hHHhhh--cCCCeEEEec--CCCceeeHHHHH
Q 032136 68 GVICIRREGQDVEKIISD---NEILDK--NKGNIKLVDE--LVPNQISSTRIR 113 (146)
Q Consensus 68 ~~iV~~R~g~~~~~~~~~---~~~l~~--~~~~i~~l~~--~~~~~iSST~IR 113 (146)
+-|.+---|..+..-... ++--.. ..+.+.+-++ ...+++||-.||
T Consensus 186 gaVFi~~IG~~L~~g~~Hd~RapDYDDW~LNGDil~w~~~l~~a~ELSSmGiR 238 (309)
T cd00645 186 GAVFIIGIGGKLSDGKKHDGRAPDYDDWTLNGDILVWNPVLQRAFELSSMGIR 238 (309)
T ss_pred CcEEEEeccCcCCCCCcCCCCCCCCcCccccceEEEEchhcCceeeecCcceE
Confidence 888887777655321000 000011 2355555431 123688887776
No 77
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=29.79 E-value=59 Score=28.34 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=27.1
Q ss_pred ceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEe
Q 032136 35 LKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIR 73 (146)
Q Consensus 35 ~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~ 73 (146)
.+.+|++|.+-+.++++...| ++-++.++|+|+.
T Consensus 405 ik~l~~~ggNp~~~~pd~~~~-----~~AL~kld~~V~~ 438 (574)
T cd02767 405 VKAFISLGGNFAEAMPDPAAT-----EEALRRLDLTVHV 438 (574)
T ss_pred ceEEEEecCCHHhcCcCHHHH-----HHHHhcCCeEEEE
Confidence 799999999999999865444 5667888887754
No 78
>KOG1749 consensus 40S ribosomal protein S23 [Translation, ribosomal structure and biogenesis]
Probab=29.38 E-value=5.3 Score=27.65 Aligned_cols=29 Identities=31% Similarity=0.614 Sum_probs=22.2
Q ss_pred HHHHHH-----HHcCCCCCccCh-HHHHHHHHhcC
Q 032136 110 TRIRDC-----ICRGLSIKYLTE-DKVIDYIRESR 138 (146)
Q Consensus 110 T~IR~~-----l~~g~~i~~lvp-~~V~~YI~~~~ 138 (146)
|.||+. |+.|+.|..+|| +..+.||.+|.
T Consensus 64 SAiRKcvRvQLIkngKKITafVp~dgcln~ieend 98 (143)
T KOG1749|consen 64 SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEND 98 (143)
T ss_pred HHHhhheeeeeeeCCceEEEEecCCCceeeeccCC
Confidence 567754 567899999998 67888888763
No 79
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=29.26 E-value=1.2e+02 Score=24.74 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=62.4
Q ss_pred CcccccCCCccchHHHHHHH-HHHhhh----------ccc-CcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhccee
Q 032136 1 MMLQANQSGYQRTLTVLSRV-KNFLIE----------AGL-ISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFG 68 (146)
Q Consensus 1 ~d~E~~~~~~syT~~tL~~l-~~~~~~----------~~~-~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~ 68 (146)
||||..-....+|+++|+.. ++.|.. .++ ++--+.+++||--.+.....++- .=+.-+ .+|++..+
T Consensus 119 WDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~te~~~~~~y~~~~~Lp~~i~FitsqeL~~~YP~l-~~keRE-~~i~ke~g 196 (327)
T PRK05425 119 WDWEKVIGKEERNLDYLKETVEKIYKAIKATEKAVSKKYPLLPFLPEEITFITSQELEDRYPDL-TPKERE-DAIAKEYG 196 (327)
T ss_pred ccHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCCceEEecHHHHHHHCCCC-CHHHHH-HHHHHHhC
Confidence 78998887777888877733 333321 111 12225689999888777776631 112221 57889888
Q ss_pred EEEEecCCCChhhhccc---hHHhhhc--CCCeEEEec--CCCceeeHHHHH
Q 032136 69 VICIRREGQDVEKIISD---NEILDKN--KGNIKLVDE--LVPNQISSTRIR 113 (146)
Q Consensus 69 ~iV~~R~g~~~~~~~~~---~~~l~~~--~~~i~~l~~--~~~~~iSST~IR 113 (146)
-|.+-.-|..+..-... ++--..| .+.+.+-++ ...+++||-.||
T Consensus 197 aVFi~~IG~~L~~g~~Hd~RapDYDDW~LNGDilvw~~~l~~a~ELSSmGiR 248 (327)
T PRK05425 197 AVFLIGIGGKLSDGKPHDGRAPDYDDWGLNGDILVWNPVLDDAFELSSMGIR 248 (327)
T ss_pred cEEEEeccCcCCCCCcCCCCCCCCcCcccCceEEEEccccCceeeecCcceE
Confidence 88888777665321100 0000112 355655431 123688887776
No 80
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.20 E-value=1.7e+02 Score=21.67 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhH---HHhhhcceeEE--EEecCCCChhh
Q 032136 12 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQ---VWTICRNFGVI--CIRREGQDVEK 81 (146)
Q Consensus 12 yT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~---~~~l~~~~~~i--V~~R~g~~~~~ 81 (146)
.+.+++..|++.||+ -++.-|.- |..=. .+|.... ..++++.+++| +..||-.++..
T Consensus 57 WA~Evv~eLk~eyp~--------ik~avitp---Fe~q~--~~WnE~nq~ky~~~l~~aD~v~~i~~~~YesPaQ 118 (180)
T COG4474 57 WAAEVVIELKEEYPH--------IKLAVITP---FEEQG--KNWNEDNQMKYARILKAADFVKSITERPYESPAQ 118 (180)
T ss_pred HHHHHHHHHHhhCCC--------eeEEEEec---hhhhc--cccCchhHHHHHHHHhhhhhhhhhccCCccCHHH
Confidence 456777778888876 44444332 22222 2676531 24567777766 56676444433
No 81
>PHA02047 phage lambda Rz1-like protein
Probab=24.63 E-value=1.1e+02 Score=20.30 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=25.3
Q ss_pred ceeeHHHHHHHHHcCCCCCc-cChHHHHHHHHh
Q 032136 105 NQISSTRIRDCICRGLSIKY-LTEDKVIDYIRE 136 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i~~-lvp~~V~~YI~~ 136 (146)
-+-++-+|+..+.+.++|.+ =||+.|.+-+=+
T Consensus 64 ae~~t~Ei~~aL~~n~~WaD~PVPpaV~~~Lck 96 (101)
T PHA02047 64 TNTQRQEVDRALDQNRPWADRPVPPAVVDSLCK 96 (101)
T ss_pred HHHHHHHHHHHHHhCCCcccCCCChHHHHHHHH
Confidence 35677889999999998864 799999876543
No 82
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=24.21 E-value=76 Score=22.63 Aligned_cols=22 Identities=36% Similarity=0.756 Sum_probs=15.9
Q ss_pred HHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 111 RIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 111 ~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
+||+++++|++ .++|.+|+.++
T Consensus 65 ~I~~~l~~G~s-----~~eI~~~~v~r 86 (148)
T PF03918_consen 65 EIREMLAEGKS-----DEEIIDYFVER 86 (148)
T ss_dssp HHHHHHHHT-------HHHHHHHHHHH
T ss_pred HHHHHHHcCCC-----HHHHHHHHHHh
Confidence 57788888875 68899998864
No 83
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=24.20 E-value=62 Score=23.73 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=29.4
Q ss_pred eEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCC
Q 032136 36 KVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQD 78 (146)
Q Consensus 36 ~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~ 78 (146)
--.|++-.+...+++ .+.|+.+ +--|-+.++|+|+.|.|..
T Consensus 107 ~~aF~~~g~qgV~y~-~GtWH~p-l~~L~~~~dF~vvdr~g~~ 147 (171)
T PRK13395 107 MRAFLAEGWQGVNYA-KGVWHHP-LLALDAVSDFVVVDRGGPQ 147 (171)
T ss_pred eEEEEecCCcEEEeC-CCccccc-ccccCCCccEEEEeCCcCC
Confidence 456777777778877 4589986 2344455789999998843
No 84
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=24.05 E-value=75 Score=19.83 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=14.9
Q ss_pred HHHHHcCCCCCc--cChHHHHHHH
Q 032136 113 RDCICRGLSIKY--LTEDKVIDYI 134 (146)
Q Consensus 113 R~~l~~g~~i~~--lvp~~V~~YI 134 (146)
|..+..|..+-. -||.+|+.|+
T Consensus 47 ~AEL~~~~kLyD~gkVP~sVW~~V 70 (71)
T PRK10391 47 RAELVSGGRLFDLGQVPKSVWHYV 70 (71)
T ss_pred HHHHHhCccccccccCCHHHHHhc
Confidence 445556633434 7999999997
No 85
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.61 E-value=93 Score=25.17 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=20.2
Q ss_pred CCccchHHHHHHHHHHhhhcccCcCCCceEEEE
Q 032136 8 SGYQRTLTVLSRVKNFLIEAGLISTESLKVMLV 40 (146)
Q Consensus 8 ~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fi 40 (146)
+...||...+-++++.||+ ++|.|.
T Consensus 159 NKDPftlk~~~yl~rLfPN--------AKfllM 183 (378)
T KOG3988|consen 159 NKDPFTLKSLVYLSRLFPN--------AKFLLM 183 (378)
T ss_pred cCCchHHHHHHHHHHHCCC--------ceEEEE
Confidence 3457999999999999999 776543
No 86
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=23.60 E-value=81 Score=22.51 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCC
Q 032136 15 TVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQ 77 (146)
Q Consensus 15 ~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~ 77 (146)
+-+..+-+..|+ .++-+++|.|+=..= .-...+..||+.|.|-
T Consensus 5 ~~I~~fi~~~~~--------~~yki~IGTDSQ~~~------------~~T~FvTaIvihR~Gk 47 (144)
T PF04308_consen 5 EDIKEFIEQDPD--------SNYKIIIGTDSQVKG------------DETCFVTAIVIHREGK 47 (144)
T ss_pred HHHHHHHHhCCC--------CCeEEEEecCCCcCC------------CceEEEEEEEEEEecC
Confidence 344555555676 899999999986542 2245678888888874
No 87
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=23.53 E-value=54 Score=18.91 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=11.3
Q ss_pred ccChHHHHHHHHhc
Q 032136 124 YLTEDKVIDYIRES 137 (146)
Q Consensus 124 ~lvp~~V~~YI~~~ 137 (146)
.-||.+|.+||.++
T Consensus 6 ~~lP~~v~~~i~~~ 19 (61)
T PF11396_consen 6 SELPAAVKNAIKKN 19 (61)
T ss_dssp GGS-HHHHHHHHHH
T ss_pred HHCCHHHHHHHHHH
Confidence 35999999999987
No 88
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=23.37 E-value=84 Score=28.26 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=27.1
Q ss_pred ceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEe
Q 032136 35 LKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIR 73 (146)
Q Consensus 35 ~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~ 73 (146)
.+.+|++|.+-+.+.++...+ ++-++.++|+|+.
T Consensus 442 ikal~~~ggNp~~~~Pd~~~~-----~~AL~kld~~V~~ 475 (743)
T TIGR01701 442 VRAFICLGGNFLEAMPDTAAI-----ERALRQLDLRVHV 475 (743)
T ss_pred ceEEEEeCCChHhcCCCHHHH-----HHHHHcCCeEEEE
Confidence 789999999999999865444 5667888888764
No 89
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=23.03 E-value=97 Score=24.12 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHhhhcccCcCCCceEEEEeehhh
Q 032136 12 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 45 (146)
Q Consensus 12 yT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 45 (146)
-|.-+++.||+.||+ +++.|++....
T Consensus 15 l~~p~l~~Lr~~~P~--------a~I~~l~~~~~ 40 (319)
T TIGR02193 15 HTLPALTDIKRALPD--------VEIDWVVEEGF 40 (319)
T ss_pred HHHHHHHHHHHhCCC--------CEEEEEEChhH
Confidence 456678999999999 89999987655
No 90
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.61 E-value=1e+02 Score=23.47 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhh
Q 032136 12 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 47 (146)
Q Consensus 12 yT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~ 47 (146)
-|.-.++.|++.||+ .++.+++..+...
T Consensus 15 ~~~p~l~~Lk~~~P~--------~~I~~l~~~~~~~ 42 (279)
T cd03789 15 LATPLLRALKARYPD--------ARITVLAPPWFAP 42 (279)
T ss_pred HHHHHHHHHHHHCCC--------CEEEEEEChhhHH
Confidence 456678999999999 8999999887433
No 91
>COG5204 SPT4 Transcription elongation factor SPT4 [Transcription]
Probab=22.34 E-value=94 Score=20.74 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=19.7
Q ss_pred CCccChHHHHHHHHhcCC-CCCCCCC
Q 032136 122 IKYLTEDKVIDYIRESRL-YLNSNDS 146 (146)
Q Consensus 122 i~~lvp~~V~~YI~~~~L-Y~~~~~~ 146 (146)
+.+.+|+.|.+-+.+|+. |...+.|
T Consensus 84 V~G~L~edvve~L~~~g~~Y~pR~gs 109 (112)
T COG5204 84 VEGALSEDVVEDLEQHGRIYYPRTGS 109 (112)
T ss_pred EcccCCHHHHHHHHHhCccccCCCCc
Confidence 567799999999999974 7666654
No 92
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=22.27 E-value=61 Score=24.89 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCC--CCCchh--HHHhhhcceeEEEE
Q 032136 11 QRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIP--GFWMPE--QVWTICRNFGVICI 72 (146)
Q Consensus 11 syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w--~~W~~~--~~~~l~~~~~~iV~ 72 (146)
.++.+|++.+.+...+ .++.++.| |.......- ..|... .++.+...+.+.++
T Consensus 18 ~~~~~~~~~l~~~~~~--------~d~vl~~G-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 74 (294)
T cd00839 18 NNSTNTLDHLEKELGN--------YDAILHVG-DLAYADGYNNGSRWDTFMRQIEPLASYVPYMVT 74 (294)
T ss_pred CCcHHHHHHHHhccCC--------ccEEEEcC-chhhhcCCccchhHHHHHHHHHHHHhcCCcEEc
Confidence 5678899999875333 56666666 887554321 135332 13444445566554
No 93
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=21.89 E-value=3.6e+02 Score=21.40 Aligned_cols=62 Identities=10% Similarity=0.033 Sum_probs=35.5
Q ss_pred HHHhhhcceeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCC
Q 032136 59 QVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 120 (146)
Q Consensus 59 ~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~ 120 (146)
+++++++.+++|++.=|..+.....-..+.+...+.+..+++...-.=|---.+-+++++|+
T Consensus 189 ~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~ 250 (311)
T PRK08410 189 SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKD 250 (311)
T ss_pred cHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence 36889999999998776543221111233455555666666522223444555666666664
No 94
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=21.52 E-value=37 Score=25.07 Aligned_cols=15 Identities=27% Similarity=0.107 Sum_probs=12.4
Q ss_pred CceeeHHHHHHHHHc
Q 032136 104 PNQISSTRIRDCICR 118 (146)
Q Consensus 104 ~~~iSST~IR~~l~~ 118 (146)
..-+|||.||+-++.
T Consensus 82 W~f~SSTlikQTvRs 96 (192)
T PF11868_consen 82 WLFLSSTLIKQTVRS 96 (192)
T ss_pred EEEeeHHHHHHHHHH
Confidence 356899999998876
No 95
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=21.13 E-value=3.7e+02 Score=21.61 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=39.3
Q ss_pred HHhhhcceeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCC
Q 032136 60 VWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 120 (146)
Q Consensus 60 ~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~ 120 (146)
++++++.+++|++.=|-.+-..-.-....+.+.+.+..+++-..---|---.+-+++++|+
T Consensus 191 Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~ 251 (324)
T COG0111 191 LDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGK 251 (324)
T ss_pred HHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCC
Confidence 6899999999998766533221111234455555566777633335677778888888885
No 96
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=21.05 E-value=99 Score=24.21 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHhhhcccCcCCCceEEEEeehhh
Q 032136 11 QRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 45 (146)
Q Consensus 11 syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 45 (146)
.-|.=+++.||+.||+ +++.||+..-.
T Consensus 15 v~~~p~~~~lk~~~P~--------a~I~~l~~~~~ 41 (322)
T PRK10964 15 LHTLPALTDAQQAIPG--------IQFDWVVEEGF 41 (322)
T ss_pred HhHHHHHHHHHHhCCC--------CEEEEEECHHH
Confidence 3456678999999999 99999998643
No 97
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=21.03 E-value=83 Score=22.84 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=26.6
Q ss_pred EEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCC
Q 032136 37 VMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQD 78 (146)
Q Consensus 37 ~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~ 78 (146)
-.|++-.....+++ .+.|+.+ +-.|-+.++|+|+.|.|..
T Consensus 107 raF~~~~~qgV~y~-~G~WH~p-l~~l~~~~dF~vvdr~g~g 146 (162)
T PRK03606 107 RAFVTNGRQGVNYH-RGVWHHP-LLALGEVSDFLVVDRGGPG 146 (162)
T ss_pred EEEEecCCcEEEeC-CCccccc-ccccCCCceEEEEeCCcCC
Confidence 45666666666665 3589875 3355566789999998743
No 98
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=20.74 E-value=1.1e+02 Score=25.40 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=18.8
Q ss_pred hhcCCCeEEEecCCCceeeHHHHHHHHHc
Q 032136 90 DKNKGNIKLVDELVPNQISSTRIRDCICR 118 (146)
Q Consensus 90 ~~~~~~i~~l~~~~~~~iSST~IR~~l~~ 118 (146)
.+.++.+.+++ . ...+|||+|++++++
T Consensus 447 ~~~~~~~~~~~-~-~~~~st~~i~~ri~~ 473 (473)
T PRK11316 447 WANGGEVKVLN-F-EDGCSTTNIIKKIRQ 473 (473)
T ss_pred HHcCCEEEEEc-C-CCCcCHHHHHHHHhC
Confidence 34456666664 2 358999999999853
No 99
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.42 E-value=1e+02 Score=23.09 Aligned_cols=102 Identities=9% Similarity=0.122 Sum_probs=65.4
Q ss_pred ccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhh
Q 032136 3 LQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKI 82 (146)
Q Consensus 3 ~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~ 82 (146)
+|+.-. .....+.++.++++||+ .++|+=++.+-.+ =. +-+-.-++|+|.+ +.+.+-.
T Consensus 33 iEit~~-tp~a~~~I~~l~~~~~~------------~~vGAGTVl~~e~---a~----~ai~aGA~FivSP--~~~~~vi 90 (201)
T PRK06015 33 IEITLR-TPAALDAIRAVAAEVEE------------AIVGAGTILNAKQ---FE----DAAKAGSRFIVSP--GTTQELL 90 (201)
T ss_pred EEEeCC-CccHHHHHHHHHHHCCC------------CEEeeEeCcCHHH---HH----HHHHcCCCEEECC--CCCHHHH
Confidence 355443 33467889999999864 7899998888763 21 4456778999975 3332211
Q ss_pred ccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHH---HHHHh
Q 032136 83 ISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVI---DYIRE 136 (146)
Q Consensus 83 ~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~---~YI~~ 136 (146)
.... ..++.+++ --.+-|+|-++++.|-++-.+-|..+. +||+.
T Consensus 91 ----~~a~--~~~i~~iP----G~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yika 137 (201)
T PRK06015 91 ----AAAN--DSDVPLLP----GAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKA 137 (201)
T ss_pred ----HHHH--HcCCCEeC----CCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHH
Confidence 0011 12444443 256788999999888887778886553 77764
No 100
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=20.17 E-value=51 Score=18.31 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=15.7
Q ss_pred CCCCCccChHHHHHHHHhc
Q 032136 119 GLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 119 g~~i~~lvp~~V~~YI~~~ 137 (146)
|.+...+|-++|..||.++
T Consensus 25 ~i~~S~Ll~eAle~~l~ky 43 (44)
T PF12651_consen 25 GIPKSKLLREALEDYLEKY 43 (44)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 5666788999999999876
No 101
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.15 E-value=72 Score=24.10 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=57.9
Q ss_pred ccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhh
Q 032136 3 LQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKI 82 (146)
Q Consensus 3 ~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~ 82 (146)
+|+.-.. .+..+.++.++++||+ .++|+++..+-.+ =+ .-+-.-++|+|.+ +.+.+-.
T Consensus 44 iEitl~~-~~~~~~I~~l~~~~p~------------~~IGAGTVl~~~~---a~----~a~~aGA~FivsP--~~~~~vi 101 (212)
T PRK05718 44 LEVTLRT-PAALEAIRLIAKEVPE------------ALIGAGTVLNPEQ---LA----QAIEAGAQFIVSP--GLTPPLL 101 (212)
T ss_pred EEEecCC-ccHHHHHHHHHHHCCC------------CEEEEeeccCHHH---HH----HHHHcCCCEEECC--CCCHHHH
Confidence 3555333 3788999999999975 6789888887641 11 3345667788875 4333211
Q ss_pred ccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHH---HHHHHh
Q 032136 83 ISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDYIRE 136 (146)
Q Consensus 83 ~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V---~~YI~~ 136 (146)
. ... ...+-+++ --.+-|+|.+.++.|-++-.+.|..+ .+||+.
T Consensus 102 -~---~a~--~~~i~~iP----G~~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~ 148 (212)
T PRK05718 102 -K---AAQ--EGPIPLIP----GVSTPSELMLGMELGLRTFKFFPAEASGGVKMLKA 148 (212)
T ss_pred -H---HHH--HcCCCEeC----CCCCHHHHHHHHHCCCCEEEEccchhccCHHHHHH
Confidence 0 000 11233332 13445667777777766666666553 356653
Done!