Query 032136
Match_columns 146
No_of_seqs 214 out of 1056
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kqn_A Nmnat, nicotinamide mon 100.0 3.2E-35 1.1E-39 229.0 12.0 142 1-142 83-256 (279)
2 1nup_A FKSG76; NAD biosynthesi 100.0 6.9E-35 2.4E-39 224.1 12.8 142 2-143 82-236 (252)
3 1yum_A 'probable nicotinate-nu 100.0 9.3E-32 3.2E-36 205.7 14.0 127 2-143 94-233 (242)
4 3h05_A Uncharacterized protein 100.0 2.2E-32 7.4E-37 200.4 7.3 101 2-144 71-174 (177)
5 1k4m_A NAMN adenylyltransferas 100.0 2.7E-30 9.2E-35 193.8 11.3 126 2-141 74-213 (213)
6 2h29_A Probable nicotinate-nuc 100.0 5.6E-30 1.9E-34 188.8 10.5 115 2-141 74-188 (189)
7 1kam_A Deamido-NAD(+), nicotin 100.0 1.8E-28 6.2E-33 181.3 12.7 115 2-141 79-193 (194)
8 2qtr_A Nicotinate (nicotinamid 99.9 1.3E-27 4.6E-32 175.5 12.1 115 2-141 74-188 (189)
9 1v47_A ATP sulfurylase; produc 99.5 1.1E-14 3.8E-19 116.2 6.8 107 2-136 227-347 (349)
10 1jhd_A Sulfate adenylyltransfe 99.5 1.6E-14 5.6E-19 116.9 5.9 108 2-137 266-390 (396)
11 1ej2_A Nicotinamide mononucleo 99.5 8.8E-15 3E-19 106.7 2.7 91 36-141 71-164 (181)
12 3nd5_A Phosphopantetheine aden 99.5 2.7E-14 9.4E-19 103.6 5.1 90 11-142 73-163 (171)
13 1o6b_A Phosphopantetheine aden 99.4 2.1E-14 7.3E-19 103.3 0.8 47 96-143 116-163 (169)
14 3f3m_A Phosphopantetheine aden 99.4 2.7E-13 9.1E-18 98.1 3.8 84 11-137 73-158 (168)
15 1f9a_A Hypothetical protein MJ 99.3 4.4E-13 1.5E-17 96.6 3.0 101 17-140 53-157 (168)
16 1vlh_A Phosphopantetheine aden 99.3 2.1E-13 7.1E-18 99.0 0.2 85 12-138 83-168 (173)
17 1qjc_A Phosphopantetheine aden 99.2 2.9E-12 9.9E-17 90.9 2.8 41 96-137 115-156 (158)
18 1od6_A PPAT, phosphopantethein 99.2 1.5E-12 5E-17 92.7 1.1 42 96-138 116-158 (160)
19 2qjo_A Bifunctional NMN adenyl 99.1 4.4E-11 1.5E-15 93.9 5.6 93 35-139 73-173 (341)
20 4f3r_A Phosphopantetheine aden 98.6 1.9E-08 6.6E-13 72.1 3.7 41 96-137 118-159 (162)
21 3k9w_A Phosphopantetheine aden 98.4 2.5E-07 8.5E-12 67.8 4.2 34 104-137 144-177 (187)
22 3nbk_A Phosphopantetheine aden 98.4 3.8E-07 1.3E-11 66.2 4.6 43 95-137 133-175 (177)
23 2qjt_B Nicotinamide-nucleotide 98.3 6.8E-07 2.3E-11 70.3 4.6 93 35-137 75-176 (352)
24 3nv7_A Phosphopantetheine aden 97.7 7.7E-06 2.6E-10 58.2 1.5 32 105-136 125-156 (157)
25 1r6x_A ATP:sulfate adenylyltra 97.4 0.00028 9.5E-09 57.0 5.8 105 6-141 263-388 (395)
26 2b7l_A Glycerol-3-phosphate cy 97.2 0.00032 1.1E-08 47.7 4.0 17 104-120 114-130 (132)
27 1coz_A Protein (glycerol-3-pho 97.1 0.00053 1.8E-08 46.3 4.3 13 105-117 115-127 (129)
28 1g8f_A Sulfate adenylyltransfe 97.0 0.00088 3E-08 55.8 5.8 103 5-136 263-386 (511)
29 3gmi_A UPF0348 protein MJ0951; 96.0 0.0041 1.4E-07 49.5 3.3 32 106-137 226-259 (357)
30 1mrz_A Riboflavin kinase/FMN a 86.9 1.5 5.3E-05 33.6 6.2 34 87-120 113-148 (293)
31 3op1_A Macrolide-efflux protei 83.0 0.47 1.6E-05 36.9 1.7 77 35-120 93-178 (308)
32 2x0k_A Riboflavin biosynthesis 80.3 0.75 2.6E-05 36.1 2.0 16 105-120 160-175 (338)
33 3glv_A Lipopolysaccharide core 75.5 0.57 2E-05 31.8 0.0 25 95-120 112-139 (143)
34 1lw7_A Transcriptional regulat 69.6 0.5 1.7E-05 36.9 -1.6 30 104-136 142-171 (365)
35 1x6v_B Bifunctional 3'-phospho 69.2 4.4 0.00015 34.4 4.0 32 105-136 584-616 (630)
36 1xou_A ESPA; coiled coil, heli 62.0 1.6 5.6E-05 31.2 0.0 18 122-139 99-118 (192)
37 1v31_A Hypothetical protein RA 54.4 4 0.00014 25.8 0.9 21 123-143 29-49 (93)
38 1v32_A AT5G08430, hypothetical 53.1 6 0.00021 25.5 1.6 21 123-143 37-57 (101)
39 2kw0_A CCMH protein; oxidoredu 50.8 12 0.00042 23.6 2.7 23 110-137 47-69 (90)
40 2hl7_A Cytochrome C-type bioge 50.6 13 0.00043 23.2 2.7 23 110-137 50-72 (84)
41 3tvz_A Putative uncharacterize 48.9 8 0.00027 27.1 1.8 31 12-50 14-44 (172)
42 1uhr_A SWI/SNF related, matrix 41.2 14 0.00048 23.2 1.9 19 125-143 31-49 (93)
43 4ae5_A Signal transduction pro 35.9 17 0.0006 25.4 1.9 31 12-50 9-39 (167)
44 2gks_A Bifunctional SAT/APS ki 35.1 16 0.00055 30.2 1.8 32 105-136 330-363 (546)
45 3fj2_A Monooxygenase-like prot 35.1 22 0.00074 25.4 2.3 30 12-49 28-57 (186)
46 4e38_A Keto-hydroxyglutarate-a 34.4 11 0.00039 27.8 0.7 94 12-136 71-167 (232)
47 3cr8_A Sulfate adenylyltranfer 30.9 42 0.0014 27.8 3.7 32 105-136 328-360 (552)
48 2jqt_A H-NS/STPA-binding prote 29.6 25 0.00086 21.1 1.5 24 112-135 46-71 (71)
49 1p94_A Plasmid partition prote 27.7 19 0.00067 21.8 0.9 22 116-137 54-75 (76)
50 3do8_A Phosphopantetheine aden 25.8 2.6 8.9E-05 28.9 -3.9 14 105-118 129-142 (148)
51 2nx2_A Hypothetical protein YP 25.7 1.3E+02 0.0045 20.9 5.1 81 54-136 87-178 (181)
52 3kb6_A D-lactate dehydrogenase 25.2 2.1E+02 0.0072 21.8 6.6 61 60-120 188-248 (334)
53 2gt1_A Lipopolysaccharide hept 21.5 84 0.0029 23.2 3.6 26 12-45 16-41 (326)
No 1
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=100.00 E-value=3.2e-35 Score=229.03 Aligned_cols=142 Identities=39% Similarity=0.686 Sum_probs=115.0
Q ss_pred CcccccCCCccchHHHHHHHHHHhhhcc------------------c----------C----cCCCceEEEEeehhhhhh
Q 032136 1 MMLQANQSGYQRTLTVLSRVKNFLIEAG------------------L----------I----STESLKVMLVCGSDLLES 48 (146)
Q Consensus 1 ~d~E~~~~~~syT~~tL~~l~~~~~~~~------------------~----------~----~~~~~~~~fiiG~D~l~~ 48 (146)
.+||+.+++++||++||++|+++|...+ | . |+.+.+++||||+|+|.+
T Consensus 83 ~~~E~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~GaD~l~~ 162 (279)
T 1kqn_A 83 DTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLES 162 (279)
T ss_dssp CCTGGGCSSCCCHHHHHHHHHHHHTC--------------------------------------CCCEEEEEEEHHHHHH
T ss_pred eccccccCCCCcHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCCccEEEEEehhhHhh
Confidence 3799999999999999999999992000 0 0 111268999999999999
Q ss_pred CCCCCCCchhHHHhhhcceeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChH
Q 032136 49 FAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTED 128 (146)
Q Consensus 49 l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~ 128 (146)
|++|++|++++.++|++.|+|||+.|+|+...........+.++.++|.+++....++||||+||+++++|+++++|||+
T Consensus 163 ~~~p~~W~~~~~e~il~~~~lvv~~R~g~~~~~~~~~~~~l~~~~~~i~~v~~~~~~~ISST~IR~~l~~g~si~~lvP~ 242 (279)
T 1kqn_A 163 FAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDVLWKHRSNIHVVNEWIANDISSTKIRRALRRGQSIRYLVPD 242 (279)
T ss_dssp TTSTTTSCHHHHHHHHHHTCEEEEESCHHHHHHHHHTCHHHHHTGGGEEEEECCSCCCCCHHHHHHHHHTTCCCBTTBCH
T ss_pred CcCccccCcchHHHHHhhCcEEEEeCCCCChHhhhhhHHHHhhcCCcEEEECCCCCCccCHHHHHHHHHcCCChhhcCCH
Confidence 99999999854589999999999999997654332223345556678999963335899999999999999999999999
Q ss_pred HHHHHHHhcCCCCC
Q 032136 129 KVIDYIRESRLYLN 142 (146)
Q Consensus 129 ~V~~YI~~~~LY~~ 142 (146)
+|++||++|+||..
T Consensus 243 ~V~~YI~~~~LY~~ 256 (279)
T 1kqn_A 243 LVQEYIEKHNLYSS 256 (279)
T ss_dssp HHHHHHHHHTCCSH
T ss_pred HHHHHHHHcCCcCC
Confidence 99999999999963
No 2
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=100.00 E-value=6.9e-35 Score=224.13 Aligned_cols=142 Identities=32% Similarity=0.594 Sum_probs=113.3
Q ss_pred cccccCCCccchHHHHHHHHHHh---hhc------c----cCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhccee
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFL---IEA------G----LISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFG 68 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~---~~~------~----~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~ 68 (146)
+||+.+++++||++||++++++| |+. + |.|+.+.+++||||+|+|.+|++|++|++++.++|++.|+
T Consensus 82 ~~E~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~fiiGaD~l~~l~~p~~W~~~~~~~i~~~~~ 161 (252)
T 1nup_A 82 PWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFG 161 (252)
T ss_dssp CHHHHSSSCCCHHHHHHHHHHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTC
T ss_pred hHHhcCCCCCCHHHHHHHHHHHHhhccccccccccccccccCCCCCceEEEEEecchHhHCCCcCccCcchHHHHHhhCc
Confidence 78999999999999999999999 110 0 0011126999999999999999999999854589999999
Q ss_pred EEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCCCC
Q 032136 69 VICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 143 (146)
Q Consensus 69 ~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~~~ 143 (146)
|+|+.|+|.+..........+..+..++.+++.....+||||.||++++.|+++++|||++|++||++|+||+..
T Consensus 162 lvv~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~lvP~~V~~yI~~~~LY~~~ 236 (252)
T 1nup_A 162 LVCVGRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKG 236 (252)
T ss_dssp EEEECCTTCCHHHHHHHCHHHHHTGGGEEEECCCSCCCCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHTTCSCC-
T ss_pred EEEEECCCCChHHhhhhHHHHHhcCCCEEEEcCCCCCccCHHHHHHHHHcCCCchhcCCHHHHHHHHHcCCcCCC
Confidence 999999998765332222234444567888862335899999999999999999999999999999999999854
No 3
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=99.97 E-value=9.3e-32 Score=205.69 Aligned_cols=127 Identities=20% Similarity=0.342 Sum_probs=105.2
Q ss_pred cccccCCCccchHHHHHHHHHHh-hhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVE 80 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~-~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~ 80 (146)
+||++++|++||++||+++++.| |+ .+|+||||+|++.+|++ |+++ ++|++.|+|+|++|+ +...
T Consensus 94 ~~e~~~~~~sytvdtl~~l~~~~~p~--------~~~~fI~G~D~l~~l~~---W~~~--~~i~~~~~~vv~~R~-~~~~ 159 (242)
T 1yum_A 94 PRELQRDKPSYTIDTLESVRAELAAD--------DQLFMLIGWDAFCGLPT---WHRW--EALLDHCHIVVLQRP-DADS 159 (242)
T ss_dssp CGGGGSSSSCCHHHHHHHHHHHSCTT--------CEEEEEEEHHHHTTGGG---STTG--GGSTTTCEEEEEECS-SSCC
T ss_pred eeeecCCCCCCHHHHHHHHHHHhCCC--------CcEEEEEehhHhhhhhh---hcCH--HHHHhhCcEEEEECC-Cchh
Confidence 68999999999999999999999 88 89999999999999995 5554 899999999999999 3322
Q ss_pred hhccc-hHHhh-----------hcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCCCC
Q 032136 81 KIISD-NEILD-----------KNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 143 (146)
Q Consensus 81 ~~~~~-~~~l~-----------~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~~~ 143 (146)
....+ ...+. ...++|.+++ .+..+||||.||++++.|++++++||++|++||++|+||+.+
T Consensus 160 ~~~~e~~~~~~~~~~~~~~~L~~~~~~i~~~~-~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI~~~~LY~~~ 233 (242)
T 1yum_A 160 EPPESLRDLLAARSVADPQALKGPGGQITFVW-QTPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRAP 233 (242)
T ss_dssp CCCGGGHHHHHHHBCSCGGGCCSSSCCEEEEE-CCCCSCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHTTTTCCC
T ss_pred hhhHHHHHHHHHhhccchhhhccCCCeEEEec-CCCCcCcHHHHHHHHHcCCChhHcCCHHHHHHHHHhCCcCCC
Confidence 11000 00011 1234788886 677899999999999999999999999999999999999864
No 4
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=99.97 E-value=2.2e-32 Score=200.44 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=83.0
Q ss_pred ccccc--CCC-ccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCC
Q 032136 2 MLQAN--QSG-YQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQD 78 (146)
Q Consensus 2 d~E~~--~~~-~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~ 78 (146)
++|.. |+| ++||++||++|++.||+ .+|+||||+|++.+|++ |+++ ++|+++|+|+|++|
T Consensus 71 ~~E~~l~~~~~~syT~dTl~~l~~~~p~--------~~~~~iiG~D~l~~l~~---W~~~--~~l~~~~~~vv~~r---- 133 (177)
T 3h05_A 71 DLEQALYQPGQSVTTYALLEKIQEIYPT--------ADITFVIGPDNFFKFAK---FYKA--EEITERWTVMACPE---- 133 (177)
T ss_dssp CHHHHHC----CCCHHHHHHHHHHHSTT--------SEEEEEECHHHHHTGGG---STTH--HHHHHHSEEEECCC----
T ss_pred ehhhhcccCCCCcchHHHHHHHHHHhcC--------CCeEEEEecchhhhccc---chhH--HHHHHhCCEEEEcC----
Confidence 56776 667 99999999999999998 89999999999999995 5554 99999999999875
Q ss_pred hhhhccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCCCCC
Q 032136 79 VEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNSN 144 (146)
Q Consensus 79 ~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~~~~ 144 (146)
.++||||+||+++++|+++++|||++|.+||++|+||+.+.
T Consensus 134 -------------------------~~~iSST~IR~~i~~g~~~~~lvp~~V~~yI~~~~LY~~~~ 174 (177)
T 3h05_A 134 -------------------------KVKIRSTDIRNALIEGKDISTYTTPTVSELLLNEGLYRETL 174 (177)
T ss_dssp -------------------------SSCCCHHHHHHHHHHTCCCTTTSCHHHHHHHHC--------
T ss_pred -------------------------CCCCcHHHHHHHHHcCCChhHhCCHHHHHHHHHcCCCCCcc
Confidence 35999999999999999999999999999999999998653
No 5
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=99.97 E-value=2.7e-30 Score=193.77 Aligned_cols=126 Identities=26% Similarity=0.312 Sum_probs=104.8
Q ss_pred cccccCCCccchHHHHHHHHHHh-hhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVE 80 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~-~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~ 80 (146)
+||+++++++||++|++++++.| |+ .+|+||+|+|++.+|++ |+++ ++|++.|+|+|++|+|....
T Consensus 74 ~~e~~~~~~s~t~~~l~~l~~~~~~~--------~~~~~i~G~D~~~~l~~---W~~~--~~i~~~~~~vv~~R~~~~~~ 140 (213)
T 1k4m_A 74 ERELKRNAPSYTAQTLKEWRQEQGPD--------VPLAFIIGQDSLLTFPT---WYEY--ETILDNAHLIVCRRPGYPLE 140 (213)
T ss_dssp CHHHHCSSCCCHHHHHHHHHHHHCTT--------SCEEEEEEHHHHHHGGG---STTH--HHHHHHCEEEEECCTTCCSS
T ss_pred HHHhcCCCCCcHHHHHHHHHHHhCCC--------CcEEEEEehhhhhhhhc---cCCH--HHHHhhCcEEEEECCCCchh
Confidence 68889999999999999999996 77 89999999999999995 6654 89999999999999997532
Q ss_pred hhcc------------chHHhh-hcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCC
Q 032136 81 KIIS------------DNEILD-KNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 141 (146)
Q Consensus 81 ~~~~------------~~~~l~-~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~ 141 (146)
.... ..+.+. ...+.+.+++ .+..+||||.||++++.|++++++||++|.+||++|+||+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~iSST~IR~~i~~g~~i~~lvP~~V~~yI~~~~LY~ 213 (213)
T 1k4m_A 141 MAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAE-TPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR 213 (213)
T ss_dssp CSSHHHHHHHHHHBCSCTTHHHHSSSCCEEEEC-CCCCCCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHTTTC
T ss_pred hhhhHHHHHHhhhhcchhhhhhhccCCeEEEEe-CCcccCCHHHHHHHHHcCCCchhcCCHHHHHHHHHcCCCC
Confidence 1100 000121 1234788886 6789999999999999999999999999999999999995
No 6
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=99.96 E-value=5.6e-30 Score=188.76 Aligned_cols=115 Identities=20% Similarity=0.285 Sum_probs=103.3
Q ss_pred cccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK 81 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~ 81 (146)
++|+.++|++||++||+++++.||+ .+++||+|+|++.+|+ +|+++ ++|++.++++|++|+|....
T Consensus 74 ~~e~~~~~~syt~dtl~~l~~~~p~--------~~~~~i~G~D~~~~~~---~W~~~--~~i~~~~~~~v~~R~~~~~~- 139 (189)
T 2h29_A 74 DDEIKRGGQSYTYDTIKAFKEQHKD--------SELYFVIGTDQYNQLE---KWYQI--EYLKEMVTFVVVNRDKNSQN- 139 (189)
T ss_dssp CHHHHHCSBCCHHHHHHHHHHHSTT--------EEEEEEEEHHHHTTGG---GSTTH--HHHHHHCEEEEECCSSSCCC-
T ss_pred hHHhcCCCCCCHHHHHHHHHHHCCC--------CcEEEEEecchhhhhc---cccCH--HHHHhhCcEEEEECCCCccc-
Confidence 6889999999999999999999998 8999999999999999 56664 89999999999999986532
Q ss_pred hccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCC
Q 032136 82 IISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 141 (146)
Q Consensus 82 ~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~ 141 (146)
...++.+++ .+..+||||.||++++.|.+++++||++|.+||++|+||+
T Consensus 140 ----------~~~~i~~~~-~~~~~ISST~IR~~i~~g~~~~~lvP~~V~~yI~~~~LY~ 188 (189)
T 2h29_A 140 ----------VENAMIAIQ-IPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYE 188 (189)
T ss_dssp ----------CCTTSEEEC-CCCBCCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHHTTTC
T ss_pred ----------cCCcEEEEc-CCCCccCHHHHHHHHHcCCChhhcCCHHHHHHHHHhCCcc
Confidence 124677885 6678999999999999999999999999999999999996
No 7
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=99.96 E-value=1.8e-28 Score=181.32 Aligned_cols=115 Identities=24% Similarity=0.360 Sum_probs=104.0
Q ss_pred cccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK 81 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~ 81 (146)
+||+++++++||++||+++++.||+ .+++||+|+|++.+|+ +|+++ ++|++.++++|+.|+|....
T Consensus 79 ~~e~~~~~~~~t~~~l~~l~~~~p~--------~~~~~v~G~D~~~~~~---~W~~~--e~i~~~~~~~v~~R~g~~~~- 144 (194)
T 1kam_A 79 LVEMEREGPSYTFDTVSLLKQRYPN--------DQLFFIIGADMIEYLP---KWYKL--DELLNLIQFIGVKRPGFHVE- 144 (194)
T ss_dssp CGGGSTTCCCSHHHHHHHHHHHSTT--------SEEEEEEETTTTTTCC---CCHHH--HHHHHHSEEEEEECSSCCCC-
T ss_pred HHHhcCCCCCChHHHHHHHHHHCCC--------CcEEEEEecchhhhhc---cccCH--HHHHHhCcEEEEECCCcchh-
Confidence 6899999999999999999999998 8999999999999999 68876 89999999999999986421
Q ss_pred hccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCC
Q 032136 82 IISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 141 (146)
Q Consensus 82 ~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~ 141 (146)
+ +.++.+++ .+..+||||.||++++.|++++++||++|.+||++|+||+
T Consensus 145 -------l---~~~i~~~~-~~~~~ISST~IR~~i~~g~~~~~lvP~~V~~yI~~~~LY~ 193 (194)
T 1kam_A 145 -------T---PYPLLFAD-VPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLYE 193 (194)
T ss_dssp -------C---SSCCEEEE-CCCBCCCHHHHHHHHHHTCCCTTTSCHHHHHHHHHTTCSC
T ss_pred -------c---CCCEEEeC-CCCCCcCHHHHHHHHHcCCCchhhCCHHHHHHHHHcCCcc
Confidence 1 24788886 6678999999999999999999999999999999999997
No 8
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=99.95 E-value=1.3e-27 Score=175.49 Aligned_cols=115 Identities=19% Similarity=0.292 Sum_probs=102.6
Q ss_pred cccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhh
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK 81 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~ 81 (146)
+||+++++++||++||++++.++|+ .+++||+|+|++.+++ +|+++ ++|++.++++|++|+|.....
T Consensus 74 ~~e~~~~~~~~~~~~l~~l~~~~p~--------~~~~~v~G~D~~~~~~---~w~~~--~~l~~~~~~~v~~r~~~~~~~ 140 (189)
T 2qtr_A 74 LEELSRKGPSYTYDTMLQLTKKYPD--------VQFHFIIGGDMVEYLP---KWYNI--EALLDLVTFVGVARPGYKLRT 140 (189)
T ss_dssp CTGGGSCSCCCHHHHHHHHHHHCTT--------CEEEEEEEHHHHHHGG---GSTTH--HHHTTTCEEEEECCTTCCCCC
T ss_pred hHHhcCCCCCCHHHHHHHHHHHCCC--------CCEEEEEehhhhhhhh---ccCCH--HHHHHhCCEEEEECCCCCccC
Confidence 6899999999999999999999998 8999999999999999 57664 899999999999999875321
Q ss_pred hccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCC
Q 032136 82 IISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 141 (146)
Q Consensus 82 ~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~ 141 (146)
...+.+++ .+..+||||.||+++++|++++++||++|.+||++|+||+
T Consensus 141 -----------~~~v~~~~-~~~~~iSST~IR~~l~~g~~~~~lvP~~V~~yI~~~~lY~ 188 (189)
T 2qtr_A 141 -----------PYPITTVE-IPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE 188 (189)
T ss_dssp -----------SSCCEEEC-CCCCCCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHTTGGG
T ss_pred -----------CceEEEEc-CCCCccCHHHHHHHHHcCCCchhcCCHHHHHHHHHcCCcC
Confidence 12577775 6667999999999999999999999999999999999996
No 9
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=99.53 E-value=1.1e-14 Score=116.16 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=83.1
Q ss_pred cccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhh--hhCCCCCCCchhHHHhhhcce-----eEEEEec
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL--ESFAIPGFWMPEQVWTICRNF-----GVICIRR 74 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l--~~l~~w~~W~~~~~~~l~~~~-----~~iV~~R 74 (146)
++|++..|++||+ ++++..++++ +. +||+|.|.. .+|. .|+++ ++|++++ .++++.|
T Consensus 227 p~~m~~aGPreai--lhaiirkn~G--------~t-~fIVGrDhag~~~~y---~~~~a--q~i~~~~~~l~i~~v~~~~ 290 (349)
T 1v47_A 227 ATPMRYAGPKEAV--FHALVRKNFG--------AT-HFLVGRDHAGVGDFY---DPYAA--HRIFDRLPPLGIEIVKVGA 290 (349)
T ss_dssp CSCCCCCTHHHHH--HHHHHHHHTT--------CS-EEEECTTTTCSTTCS---CTTHH--HHGGGGSCCCSSEEEECCC
T ss_pred hHHhhcCCcHHHH--HHHHHHHcCC--------Cc-EEEECcCCCCccccc---CcccH--HHHHHhhhhcCceEEeccc
Confidence 5788899999996 8876555555 66 999999997 6666 78886 9999998 8899888
Q ss_pred CCCChhhhccchHHhhhcCCCeEEEe------cCCCceeeHHHHHHHHHcCCC-CCccChHHHHHHHHh
Q 032136 75 EGQDVEKIISDNEILDKNKGNIKLVD------ELVPNQISSTRIRDCICRGLS-IKYLTEDKVIDYIRE 136 (146)
Q Consensus 75 ~g~~~~~~~~~~~~l~~~~~~i~~l~------~~~~~~iSST~IR~~l~~g~~-i~~lvp~~V~~YI~~ 136 (146)
.++.... +.+..+. ..+..+||||+||+++++|+. +.+++|++|.+||++
T Consensus 291 ~~Y~~~~------------~~~~~~~~~p~~~~~~~~~ISgT~iR~~L~~G~~pp~~f~~peV~~~I~~ 347 (349)
T 1v47_A 291 VFHCPLC------------GGIASERTCPEGHREKRTAISMTKVRALLREGKAPPSELVRPELLPILRR 347 (349)
T ss_dssp EEEETTT------------TEEEETTTSCGGGGGGCEECCHHHHHHHHHTTCCCCTTTSCGGGHHHHHT
T ss_pred cEEcccC------------CceEEccccCccCCCcccccCHHHHHHHHHCcCCCchhcCCHHHHHHHHh
Confidence 7763221 1233321 123479999999999999995 579999999999987
No 10
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=99.50 E-value=1.6e-14 Score=116.86 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=80.9
Q ss_pred cccccCCCccchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhh--hhCCCCCCCchhHHHhhhcc--------eeEEE
Q 032136 2 MLQANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL--ESFAIPGFWMPEQVWTICRN--------FGVIC 71 (146)
Q Consensus 2 d~E~~~~~~syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l--~~l~~w~~W~~~~~~~l~~~--------~~~iV 71 (146)
++|++..|++||+ +..+..++.+ +. +||+|.|.+ .+|. .|+++ ++|++. +.+++
T Consensus 266 p~~m~~aGPreai--lhaiirkn~G--------~t-~fIVGrDhag~~~~y---~~~~a--q~il~~~~~~~~l~i~iv~ 329 (396)
T 1jhd_A 266 GFDMLYAGPREAV--LHAYFRQNMG--------AT-HFIIGRDHAGVGDYY---GAFDA--QTIFDDEVPEGAMEIEIFR 329 (396)
T ss_dssp ECCCCCCTHHHHH--HHHHHHHHTT--------CS-EEEECTTTTCCTTCS---CTTHH--HHHHHHTSCTTSCSCEEEE
T ss_pred hHHhhcCCchHHH--HHHHHHHcCC--------Cc-EEEECCCCCCccccC---CcchH--HHHHHhcccccccceeEEe
Confidence 5788899999998 5554444445 66 999999997 6677 78886 888885 68899
Q ss_pred EecCCCChhhhccchHHhhhcCCCeEEEec------CCCceeeHHHHHHHHHcCCC-CCccChHHHHHHHHhc
Q 032136 72 IRREGQDVEKIISDNEILDKNKGNIKLVDE------LVPNQISSTRIRDCICRGLS-IKYLTEDKVIDYIRES 137 (146)
Q Consensus 72 ~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~------~~~~~iSST~IR~~l~~g~~-i~~lvp~~V~~YI~~~ 137 (146)
+.|.++.... +.+..+.. .+.++||||+||+++++|+. +..++|++|.+||.++
T Consensus 330 ~~~~~Y~~~~------------~~~~~~~~~p~~~~~~~~~ISgT~IR~~L~~G~~pP~~f~~peV~~~I~~~ 390 (396)
T 1jhd_A 330 ADHTAYSKKL------------NKIVMMRDVPDHTKEDFVLLSGTKVREMLGQGIAPPPEFSRPEVAKILMDY 390 (396)
T ss_dssp CCCEEEETTT------------TEEEEGGGCTTCCGGGEECCCHHHHHHHHHTTCCCCTTTCCHHHHHHHHHH
T ss_pred cccceecCCC------------CeEEEccccCcccCCCccccCHHHHHHHHHCCCCCCcccCCHHHHHHHHHh
Confidence 9998763221 12323211 23478999999999999984 5889999999999984
No 11
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.48 E-value=8.8e-15 Score=106.72 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=71.2
Q ss_pred eEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCce---eeHHHH
Q 032136 36 KVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQ---ISSTRI 112 (146)
Q Consensus 36 ~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~---iSST~I 112 (146)
+.++|+|.|.+.... .|.+. ++++...++++|+.|++. .. .+.. .++.++. .+..+ ||||.|
T Consensus 71 ~~v~v~~~d~~~~~~---~w~~~-~~~l~~~~~~~v~gr~~~--~~------~~~~--~~i~~~~-~~~~~~~~ISST~I 135 (181)
T 1ej2_A 71 SRYYIIPVQDIECNA---LWVGH-IKMLTPPFDRVYSGNPLV--QR------LFSE--DGYEVTA-PPLFYRDRYSGTEV 135 (181)
T ss_dssp GGEEEEECCCCSCHH---HHHHH-HHHHSCCCSEEECCCHHH--HH------HHHH--TTCCEEC-CCCSSTTTSSHHHH
T ss_pred CcEEEEecCccCCHH---HHHHH-HHHHCCCCCEEEECCHHH--HH------HHHh--CCeEEEe-cCCCccCcCcHHHH
Confidence 578999999988777 57663 477888999999998751 11 1111 2455554 44455 999999
Q ss_pred HHHHHcCCCCCccChHHHHHHHHhcCCCC
Q 032136 113 RDCICRGLSIKYLTEDKVIDYIRESRLYL 141 (146)
Q Consensus 113 R~~l~~g~~i~~lvp~~V~~YI~~~~LY~ 141 (146)
|++++.|.+++++||++|.+||++|+||.
T Consensus 136 R~~l~~G~~i~~lvP~~V~~yI~~~~l~~ 164 (181)
T 1ej2_A 136 RRRMLDDGDWRSLLPESVVEVIDEINGVE 164 (181)
T ss_dssp HHHHHHTCCCGGGSCHHHHHHHHHTTHHH
T ss_pred HHHHHcCCChhHhCCHHHHHHHHHcCChH
Confidence 99999999999999999999999999984
No 12
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.48 E-value=2.7e-14 Score=103.62 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=62.1
Q ss_pred cchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhhccchHHhh
Q 032136 11 QRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILD 90 (146)
Q Consensus 11 syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~ 90 (146)
+||++|++.++ .+ +||+|.|++.++ +..++++.+ .|. +.
T Consensus 73 ~~tvd~~~~l~-------------~~-~~i~G~~~~~d~-----------~~e~~la~~---nr~-------------l~ 111 (171)
T 3nd5_A 73 QLTVESAKSLG-------------AN-FLIRGIRNVKDY-----------EYEKDIAKM---NQH-------------LA 111 (171)
T ss_dssp SCHHHHHHHHT-------------CC-EEEEEECSHHHH-----------HHHHHHHHH---HHH-------------HC
T ss_pred CcHHHHHHHCC-------------CC-EEEECCCchhhh-----------HHHHHHHHH---hhh-------------hc
Confidence 68999987663 23 799998876653 344555554 332 11
Q ss_pred hcCCCeEEEecCCCc-eeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCCC
Q 032136 91 KNKGNIKLVDELVPN-QISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 142 (146)
Q Consensus 91 ~~~~~i~~l~~~~~~-~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~~ 142 (146)
.....++++. .+.. +||||.||+.++.|.+++++||++|.+||++++||-+
T Consensus 112 ~~~etv~l~~-~~~~~~ISST~IRe~~~~g~~i~~lVP~~V~~~i~~~~~y~~ 163 (171)
T 3nd5_A 112 PEIETVFLLA-EEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQKKNDWS 163 (171)
T ss_dssp TTSEEEEEEC-CGGGTTCCHHHHHHHHHTTCCCGGGSCHHHHHHHHHC-----
T ss_pred CCccEEEEeC-CccccccchHHHHHHHHcCCChhHhCCHHHHHHHHHhhcccc
Confidence 1113466665 5554 9999999999999999999999999999999999964
No 13
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.42 E-value=2.1e-14 Score=103.34 Aligned_cols=47 Identities=11% Similarity=-0.020 Sum_probs=40.2
Q ss_pred eEEEecCCC-ceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCCCCC
Q 032136 96 IKLVDELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 143 (146)
Q Consensus 96 i~~l~~~~~-~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY~~~ 143 (146)
+.++. .+. .+||||.||+++++|.+++++||++|.+||++++||+..
T Consensus 116 i~~~~-~~~~~~ISST~IR~~l~~G~~~~~~vP~~V~~yi~~~~ly~~~ 163 (169)
T 1o6b_A 116 FFMMA-NNQYSFLSSSIVKEVARYDGSVSEFVPPEVELALQQKFRQGGS 163 (169)
T ss_dssp EEEEC-CSTTTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHHHSCSC
T ss_pred EEEEC-CCCCCcCcHHHHHHHHHcCCChhHHCCHHHHHHHHHhhCcCCC
Confidence 44443 443 479999999999999999999999999999999999764
No 14
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.37 E-value=2.7e-13 Score=98.14 Aligned_cols=84 Identities=12% Similarity=0.181 Sum_probs=60.1
Q ss_pred cchHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHH-hhhcceeEEEEecCCCChhhhccchHHh
Q 032136 11 QRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVW-TICRNFGVICIRREGQDVEKIISDNEIL 89 (146)
Q Consensus 11 syT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~-~l~~~~~~iV~~R~g~~~~~~~~~~~~l 89 (146)
.||++|+++++ .+ +||+|.|++.++. | + ++... .|. +
T Consensus 73 ~~tvd~~~~l~-------------~~-~~I~G~d~~~d~~----~-----e~~~a~~------~r~-------------l 110 (168)
T 3f3m_A 73 GLLVDYCEQVG-------------AK-TIIRGLRAVSDFE----Y-----ELRLTSM------NKK-------------L 110 (168)
T ss_dssp SCHHHHHHHHT-------------CC-EEEEEECTTCCHH----H-----HHHHHHH------HHH-------------H
T ss_pred CCHHHHHHHcC-------------CC-EEEEcCCchhhhh----H-----HHHHhHH------hHh-------------h
Confidence 39999998763 22 6999999876643 2 2 23221 221 1
Q ss_pred hhcCCCeEEEecCCCce-eeHHHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 90 DKNKGNIKLVDELVPNQ-ISSTRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 90 ~~~~~~i~~l~~~~~~~-iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
......+++++ .+..+ ||||.||+.++.|.++++|||++|.+||+++
T Consensus 111 ~~~~e~v~l~~-~p~~~~ISST~IRe~~~~g~~i~~lvP~~V~~~i~~~ 158 (168)
T 3f3m_A 111 NNEIETLYMMS-STNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKK 158 (168)
T ss_dssp CTTSEEEEEEC-CTTTTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEeC-CcccccccHHHHHHHHHcCCChhHHCCHHHHHHHHHh
Confidence 10012466775 67776 9999999999999999999999999999976
No 15
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.33 E-value=4.4e-13 Score=96.56 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=74.0
Q ss_pred HHHHHHHhhhcccCcCCCce-EEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhhccchHHhhhcCCC
Q 032136 17 LSRVKNFLIEAGLISTESLK-VMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGN 95 (146)
Q Consensus 17 L~~l~~~~~~~~~~~~~~~~-~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~ 95 (146)
++.++....+ .. -..+++.|.+..+. .|+++ ++++...++++++.|++. .. .+.. .+
T Consensus 53 ~~m~~~~~~~--------~~~~v~v~~~d~l~~~~---~w~~~-~~~~~~~~~~~~~~~~~~--~~------~~~~--~~ 110 (168)
T 1f9a_A 53 ILMITQSLKD--------YDLTYYPIPIKDIEFNS---IWVSY-VESLTPPFDIVYSGNPLV--RV------LFEE--RG 110 (168)
T ss_dssp HHHHHHHHTT--------SSCEEEEEECCCCSCGG---GHHHH-HHHHSCCCSEEECCCHHH--HH------HHHH--TT
T ss_pred HHHHHHHHhc--------CCCceEEEeeCCcccHH---HHHHH-HHHhccCCCEEEECcHHH--HH------hhhh--cC
Confidence 4555655544 22 34567888877766 67764 477888899998877541 11 1111 35
Q ss_pred eEEEecCCCce---eeHHHHHHHHHcCCCCCccChHHHHHHHHhcCCC
Q 032136 96 IKLVDELVPNQ---ISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 140 (146)
Q Consensus 96 i~~l~~~~~~~---iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY 140 (146)
+.++. .+..+ ||||.||++++.|.+++++||++|.+||++|+||
T Consensus 111 i~~~~-~~~~~~~~ISST~IR~~~~~g~~i~~lvP~~V~~yI~~~~l~ 157 (168)
T 1f9a_A 111 YEVKR-PEMFNRKEYSGTEIRRRMLNGEKWEHLVPKAVVDVIKEIKGV 157 (168)
T ss_dssp CEEEC-CCCCSTTTSSHHHHHHHHHHTCCCGGGSCHHHHHHHHHHTHH
T ss_pred cEEEe-CCccccCcccHHHHHHHHHcCCChhHcCCHHHHHHHHHcCCh
Confidence 77775 66666 9999999999999999999999999999999987
No 16
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.31 E-value=2.1e-13 Score=98.96 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhhccchHHhhh
Q 032136 12 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDK 91 (146)
Q Consensus 12 yT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~ 91 (146)
||++|+++++ .+ +||.| |.+ |+++ +.++ +++++.|++...
T Consensus 83 ~tvd~l~~l~-------------~~-~~i~g------l~~---w~d~--~~~~---~~~~~~r~~~~~------------ 122 (173)
T 1vlh_A 83 LLVDYLKKHG-------------IK-VLVRG------LRA---VTDY--EYEL---QMALANKKLYSD------------ 122 (173)
T ss_dssp CHHHHHHHHT-------------CC-EEEEE------ECT---TSCH--HHHH---HHHHHHHHHSTT------------
T ss_pred hHHHHHHHhC-------------CC-eEEeC------CCc---ccch--hhcc---chhhcCCCCCCC------------
Confidence 9999998774 22 26644 564 5553 5554 567778876421
Q ss_pred cCCCeEEEecCCCce-eeHHHHHHHHHcCCCCCccChHHHHHHHHhcC
Q 032136 92 NKGNIKLVDELVPNQ-ISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 138 (146)
Q Consensus 92 ~~~~i~~l~~~~~~~-iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~ 138 (146)
...+.++. .+..+ ||||.||+.++.|.+++++||++|.+||++|.
T Consensus 123 -~~~i~l~~-~~~~~~iSST~IR~~i~~g~~i~~lvP~~V~~yI~~~~ 168 (173)
T 1vlh_A 123 -LETVFLIA-SEKFSFISSSLVKEVALYGGDVTEWVPPEVARALNEKL 168 (173)
T ss_dssp -CEEEEEEC-CGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHT
T ss_pred -CcEEEEeC-CCCCCceeHHHHHHHHHcCCChhHcCCHHHHHHHHHHH
Confidence 11355554 55555 99999999999999999999999999999874
No 17
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.23 E-value=2.9e-12 Score=90.86 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=34.8
Q ss_pred eEEEecCCC-ceeeHHHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 96 IKLVDELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 96 i~~l~~~~~-~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
+.++. .+. .+||||.||+++++|++++++||++|.+||++|
T Consensus 115 i~~~~-~~~~~~iSST~IR~~i~~g~~~~~~vP~~V~~yI~~~ 156 (158)
T 1qjc_A 115 VFLMP-SKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAK 156 (158)
T ss_dssp EEECC-CGGGTTCCHHHHHHHHHTTCCCGGGSCHHHHHHHHHH
T ss_pred EEEEC-CCCCCccCHHHHHHHHHcCCChhHhCCHHHHHHHHHh
Confidence 44443 444 479999999999999999999999999999986
No 18
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.23 E-value=1.5e-12 Score=92.65 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=35.5
Q ss_pred eEEEecCCC-ceeeHHHHHHHHHcCCCCCccChHHHHHHHHhcC
Q 032136 96 IKLVDELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 138 (146)
Q Consensus 96 i~~l~~~~~-~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~ 138 (146)
+.++. .+. .+||||.||+++++|.+++++||++|.+||++|.
T Consensus 116 i~~~~-~~~~~~ISST~IR~~l~~G~~~~~~vP~~V~~~I~~~~ 158 (160)
T 1od6_A 116 LFILA-ATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAKL 158 (160)
T ss_dssp EEEEC-CGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHT
T ss_pred EEEeC-CCCCCcccHHHHHHHHHcCCChhHHCCHHHHHHHHHHh
Confidence 44553 443 4899999999999999999999999999999873
No 19
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.13 E-value=4.4e-11 Score=93.87 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=67.2
Q ss_pred ceEEEEeehhhhhhCCCCCCCchhHHHhhhcc-----eeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCC-Cceee
Q 032136 35 LKVMLVCGSDLLESFAIPGFWMPEQVWTICRN-----FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELV-PNQIS 108 (146)
Q Consensus 35 ~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~-----~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~-~~~iS 108 (146)
.+++|++|.|.+.++. .|++. .+++++. ++++++.++...... ..+...++.++. .+ ..+||
T Consensus 73 ~~~~~i~~~d~~~~~~---~w~~~-~~~l~~~l~r~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~-~~~~~~iS 140 (341)
T 2qjo_A 73 KRVHFLTVRDWLYSDN---LWLAA-VQQQVLKITGGSNSVVVLGHRKDASSY-------YLNLFPQWDYLE-TGHYPDFS 140 (341)
T ss_dssp TTEEEEEEECCTTCHH---HHHHH-HHHHHHHHHTTCSCEEEEECCCSGGGG-------GGGSCTTSEEEE-CCCCTTCC
T ss_pred CeEEEEECCCCcCChH---HHHHH-HHHHhHHhcCCCceEEEEcCCCCCChH-------HHHhccccceee-cccCCCCC
Confidence 3699999999988888 46654 2456665 678887655321111 111122466664 44 57999
Q ss_pred HHHHHHHHHcCCCCCc--cChHHHHHHHHhcCC
Q 032136 109 STRIRDCICRGLSIKY--LTEDKVIDYIRESRL 139 (146)
Q Consensus 109 ST~IR~~l~~g~~i~~--lvp~~V~~YI~~~~L 139 (146)
||.||+++++|+++++ +||++|.+||.++++
T Consensus 141 ST~IR~~l~~g~~~~~~~lvp~~v~~~i~~~~~ 173 (341)
T 2qjo_A 141 STAIRGAYFEGKEGDYLDKVPPAIADYLQTFQK 173 (341)
T ss_dssp HHHHHHHHHHTCGGGTTTTSCHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCCcchhhhCCHHHHHHHHHhcc
Confidence 9999999999999777 999999999999875
No 20
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=98.62 E-value=1.9e-08 Score=72.07 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=32.7
Q ss_pred eEEEecCCC-ceeeHHHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 96 IKLVDELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 96 i~~l~~~~~-~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
++++. .+. ..||||.||+.++.|.+++++||+.|.+||+++
T Consensus 118 v~l~~-~~~~~~ISST~IRe~~~~g~~i~~~VP~~V~~~l~~~ 159 (162)
T 4f3r_A 118 IFLPA-REGYSYVSGTMVREIVTLGGDVSPFVPPLVARHLQKR 159 (162)
T ss_dssp EEEEC-CGGGSSCCHHHHHHHHHTTCCCTTTSCHHHHHHC---
T ss_pred EEEEC-CcccccccHHHHHHHHHcCCChhHhCCHHHHHHHHHH
Confidence 44443 443 599999999999999999999999999999875
No 21
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=98.38 E-value=2.5e-07 Score=67.75 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=32.1
Q ss_pred CceeeHHHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 104 PNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 104 ~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
...||||.||+.++.|.+++++||+.|.+||+++
T Consensus 144 ~~~ISST~IRe~~~~g~~i~~lVP~~V~~~i~~k 177 (187)
T 3k9w_A 144 YQFISGTIVREIAQLGGDVSKFVFPSVEKWLTEK 177 (187)
T ss_dssp GTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHcCCChhHHCCHHHHHHHHHH
Confidence 3689999999999999999999999999999875
No 22
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=98.35 E-value=3.8e-07 Score=66.24 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=35.5
Q ss_pred CeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 95 NIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 95 ~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
.++++.......||||.||+.++.|.+++++||++|.+||+++
T Consensus 133 tvfl~~~~~~~~ISST~IRe~~~~ggdv~~lVP~~V~~~l~~~ 175 (177)
T 3nbk_A 133 TFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDR 175 (177)
T ss_dssp EEEEECCGGGSSCCHHHHHHHHHTTCCCGGGSCHHHHHHHHHH
T ss_pred eEEEeCCCcccccchHHHHHHHHcCCChhHhCCHHHHHHHHHH
Confidence 3455532233699999999999999999999999999999874
No 23
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=98.26 E-value=6.8e-07 Score=70.27 Aligned_cols=93 Identities=6% Similarity=0.015 Sum_probs=61.8
Q ss_pred ceEEEEeehhhhhhCCCCCCCchhHHHhhhcc----eeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHH
Q 032136 35 LKVMLVCGSDLLESFAIPGFWMPEQVWTICRN----FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISST 110 (146)
Q Consensus 35 ~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~----~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST 110 (146)
.+++|++|.|.+.... .|.+..-+.+.+. ..++++.|........ + .....+..+.......||||
T Consensus 75 ~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~------~-~~~~~~~~~~~~~~~~iSST 144 (352)
T 2qjt_B 75 DTVVIEPLADYFYQEQ---KWQDELRKNVYKHAKNNNSIAIVGHIKDSSSYY------I-RSFPEWDYIGVDNYKNFNAT 144 (352)
T ss_dssp GGEEEEEEECCTTCHH---HHHHHHHHHHTTTSCSSCCEEECCBSSSSHHHH------H-HHCTTSEECCBCCTTCCCHH
T ss_pred ceEEEEEcCCCcCChH---HHHHHHHHHHHHhcccCCeEEEEcCCCCcchhh------h-hcCCccceeccCCCCCCCch
Confidence 6899999999998888 5766411334443 4667776654221110 1 11122334431223579999
Q ss_pred HHHHHHHc-C--CC-CCccChH-HHHHHHHhc
Q 032136 111 RIRDCICR-G--LS-IKYLTED-KVIDYIRES 137 (146)
Q Consensus 111 ~IR~~l~~-g--~~-i~~lvp~-~V~~YI~~~ 137 (146)
.||+.++. | .+ +++|||+ +|.+||.+.
T Consensus 145 ~IR~~~~~~g~~~~~i~~lvP~~~va~~I~~w 176 (352)
T 2qjt_B 145 EFRQKFYNGIISKQYMCSNDPKLGTYNFLTKF 176 (352)
T ss_dssp HHHHHHHTTCCCGGGCSCSSTTSHHHHHHHHH
T ss_pred HHHHHHhccCcccchhhhcCChHHHHHHHHHH
Confidence 99999997 8 77 9999999 999999864
No 24
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=97.75 E-value=7.7e-06 Score=58.15 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=30.0
Q ss_pred ceeeHHHHHHHHHcCCCCCccChHHHHHHHHh
Q 032136 105 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRE 136 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~ 136 (146)
..||||.||+.++.|.+++++||+.|.++|++
T Consensus 125 ~~iSSt~vRe~~~~ggdv~~~VP~~V~~~l~~ 156 (157)
T 3nv7_A 125 AFISSSIVRSIIAHKGDASHLVPKEIYPLISK 156 (157)
T ss_dssp HTCCHHHHHHHHHTTCCCTTTSCTTTHHHHCC
T ss_pred ceeeHHHHHHHHHcCCChHHhCCHHHHHHHhh
Confidence 47999999999999999999999999999864
No 25
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=97.35 E-value=0.00028 Score=56.99 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=65.9
Q ss_pred cCCCccchHHHHHH-HHHHhhhcccCcCCCceEEEEeehhhhh--------hCCCCCCCchhHHHhhhcce------eEE
Q 032136 6 NQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLE--------SFAIPGFWMPEQVWTICRNF------GVI 70 (146)
Q Consensus 6 ~~~~~syT~~tL~~-l~~~~~~~~~~~~~~~~~~fiiG~D~l~--------~l~~w~~W~~~~~~~l~~~~------~~i 70 (146)
+-.||...+ +.. +++.|. +. .||+|-|..- +|= .|+++ ++|++.+ .++
T Consensus 263 ryAGPrEai--~HAiiRkN~G---------ct-hfIVGRDhAG~g~~~~~~d~Y---~~~~a--q~i~~~~~~el~I~~v 325 (395)
T 1r6x_A 263 RMSGDREAV--WHAIIRKNYG---------AS-HFIVGRDHAGPGKNSKGVDFY---GPYDA--QELVESYKHELDIEVV 325 (395)
T ss_dssp CCCHHHHHH--HHHHHHHHTT---------CS-EEEECTTTTCCCBCTTSCBSS---CTTHH--HHHHHHHHHHHTCEEE
T ss_pred hhcCcHHHH--HHHHHHHHcC---------Cc-eEEECCCCCCCCCCCcccccC---CcchH--HHHHHhchhccCceEE
Confidence 334444443 444 466664 44 6999999764 444 56665 8888776 555
Q ss_pred EEecCCCChhhhccchHHhhhcCCCeEEEecC-----CCceeeHHHHHHHHHcCCCC-CccChHHHHHHHHhcCCCC
Q 032136 71 CIRREGQDVEKIISDNEILDKNKGNIKLVDEL-----VPNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRESRLYL 141 (146)
Q Consensus 71 V~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~-----~~~~iSST~IR~~l~~g~~i-~~lvp~~V~~YI~~~~LY~ 141 (146)
.+..--+.... +.+...+.. ....||+|+||+++++|..+ ..+++++|.+.+.+ +|.
T Consensus 326 ~f~~~~Y~~~~------------~~~~~~~~~p~~~~~~~~iSGT~~R~~L~~G~~pP~~f~rpeV~~iL~~--~~~ 388 (395)
T 1r6x_A 326 PFRMVTYLPDE------------DRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRE--SNP 388 (395)
T ss_dssp ECCCEEEEGGG------------TEEEETTTSCSSSCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHTT--C--
T ss_pred EecceEEeccc------------CeEEEcccCCCCccceEccCHHHHHHHHHCcCCCCcccCCHHHHHHHHH--hcC
Confidence 55443222111 122222111 24689999999999999987 78999999998877 554
No 26
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=97.20 E-value=0.00032 Score=47.69 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=0.9
Q ss_pred CceeeHHHHHHHHHcCC
Q 032136 104 PNQISSTRIRDCICRGL 120 (146)
Q Consensus 104 ~~~iSST~IR~~l~~g~ 120 (146)
...||||.||+++++|.
T Consensus 114 ~~~iSST~IR~~i~~g~ 130 (132)
T 2b7l_A 114 TEGISTTKIKQELYGKD 130 (132)
T ss_dssp CC---------------
T ss_pred CCCcCHHHHHHHHHhcC
Confidence 35799999999999885
No 27
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=97.09 E-value=0.00053 Score=46.32 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=10.3
Q ss_pred ceeeHHHHHHHHH
Q 032136 105 NQISSTRIRDCIC 117 (146)
Q Consensus 105 ~~iSST~IR~~l~ 117 (146)
..||||.||++++
T Consensus 115 ~~iSST~IR~~i~ 127 (129)
T 1coz_A 115 EGISTTKIKEEIA 127 (129)
T ss_dssp TTCCHHHHHHTC-
T ss_pred CCcCHHHHHHHHH
Confidence 3699999999865
No 28
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.03 E-value=0.00088 Score=55.78 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=65.5
Q ss_pred ccCCCccchHHHHHH-HHHHhhhcccCcCCCceEEEEeehhhhh--------hCCCCCCCchhHHHhhhcce------eE
Q 032136 5 ANQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLE--------SFAIPGFWMPEQVWTICRNF------GV 69 (146)
Q Consensus 5 ~~~~~~syT~~tL~~-l~~~~~~~~~~~~~~~~~~fiiG~D~l~--------~l~~w~~W~~~~~~~l~~~~------~~ 69 (146)
.+-.||...+ +.. +++.|. +. .||+|-|..- ++= .|+++ ++|++.+ .+
T Consensus 263 m~yaGprea~--~hai~r~n~G---------~t-h~IvGrdhAg~g~~~~~~~~Y---~~~~a--q~i~~~~~~~l~i~p 325 (511)
T 1g8f_A 263 MRMSGDREAV--WHAIIRKNYG---------AS-HFIVGRDHAGPGKNSKGVDFY---GPYDA--QELVESYKHELDIEV 325 (511)
T ss_dssp CCCCHHHHHH--HHHHHHHHTT---------CS-EEECCTTTTCCCBCTTSCBSS---CTTHH--HHHHHHTHHHHCSEE
T ss_pred hhccCcHHHH--HHHHHHHhCC---------Cc-eEEeCCCCCCCCCCCcccccC---CcchH--HHHHHhCccccCceE
Confidence 3334444444 444 466664 44 6999999764 443 56665 8888765 34
Q ss_pred EEEecCCCChhhhccchHHhhhcCCCeEEEecCC-----CceeeHHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 032136 70 ICIRREGQDVEKIISDNEILDKNKGNIKLVDELV-----PNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 136 (146)
Q Consensus 70 iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~-----~~~iSST~IR~~l~~g~~i-~~lvp~~V~~YI~~ 136 (146)
+++..-.+... .+.+..++..+ ...||+|+||+++++|..+ ..+++++|.+.+++
T Consensus 326 v~fd~~~y~~~------------~g~~i~~d~~p~~~~~~~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr~ 386 (511)
T 1g8f_A 326 VPFRMVTYLPD------------EDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRE 386 (511)
T ss_dssp ECCCCEEEEGG------------GTEEEEGGGCSSSCCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHH
T ss_pred EeecceeEecc------------cCeEEEcccCCCCcccccccCHHHHHHHHhCCCCCCccccChhhHHHHHH
Confidence 44332211110 12344443223 3789999999999999988 68999999999987
No 29
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=96.00 E-value=0.0041 Score=49.53 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=29.7
Q ss_pred eeeHHHHHHHHHcCC--CCCccChHHHHHHHHhc
Q 032136 106 QISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 137 (146)
Q Consensus 106 ~iSST~IR~~l~~g~--~i~~lvp~~V~~YI~~~ 137 (146)
.+|+|.||+++++|. .++.+||+.+.+|+++.
T Consensus 226 ~~SAS~IR~~i~~g~~~~~~~lVP~~t~~~l~~~ 259 (357)
T 3gmi_A 226 GISGTKIREAIFSGKFEDIKNMLPKTTLSILKEL 259 (357)
T ss_dssp CCCHHHHHHHHHTTCGGGTGGGSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCChhHHHhcCChHHHHHHHHH
Confidence 799999999999996 79999999999999864
No 30
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=86.92 E-value=1.5 Score=33.62 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=22.1
Q ss_pred HHhhhcCCCeEEEecC--CCceeeHHHHHHHHHcCC
Q 032136 87 EILDKNKGNIKLVDEL--VPNQISSTRIRDCICRGL 120 (146)
Q Consensus 87 ~~l~~~~~~i~~l~~~--~~~~iSST~IR~~l~~g~ 120 (146)
+.|.+++..+..++.. ....||||.||+++++|.
T Consensus 113 ~~L~~~G~~V~~v~~~~~~~~~iSST~IR~~L~~G~ 148 (293)
T 1mrz_A 113 SFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEGR 148 (293)
T ss_dssp HHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTTC
T ss_pred HHHHhCCCEEEEECCEEeCCccccHhHHHHHHhcCc
Confidence 3444444455555411 125899999999999985
No 31
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=83.04 E-value=0.47 Score=36.88 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=40.3
Q ss_pred ceEEEEeehhh-hhhCCCCCCCchhHHHhhhc--ceeEEEEecC---CCChhhhccchHHhhhcCC-CeEEEecC--CCc
Q 032136 35 LKVMLVCGSDL-LESFAIPGFWMPEQVWTICR--NFGVICIRRE---GQDVEKIISDNEILDKNKG-NIKLVDEL--VPN 105 (146)
Q Consensus 35 ~~~~fiiG~D~-l~~l~~w~~W~~~~~~~l~~--~~~~iV~~R~---g~~~~~~~~~~~~l~~~~~-~i~~l~~~--~~~ 105 (146)
.+..+++-.|. |..+. +..- +++++. .+..+|+.-+ |. -. ...+.|.+++. .+..++.. ...
T Consensus 93 VD~v~~~~F~~~~a~ls----~e~F-v~~ll~~l~~~~ivvG~DfrFG~-r~---G~~~~L~~~~~~~V~~v~~~~~~~~ 163 (308)
T 3op1_A 93 VEELYLLDFSSQFASLT----AQEF-FATYIKAMNAKIIVAGFDYTFGS-DK---KTAEDLKNYFDGEVIIVPPVEDEKG 163 (308)
T ss_dssp CCEEEEECCCHHHHTCC----HHHH-HHHHHHHHTEEEEEEETTCCBTT-TT---BCSTTHHHHCSSEEEEECCCBCSSC
T ss_pred CCEEEEecCCHHHHcCC----HHHH-HHHHHHHcCCCEEEECcCCCCCC-cC---CCHHHHHHhCCCCEEEeCCEecCCc
Confidence 55666666663 66654 3221 233332 2455666532 22 11 11233444433 35555421 124
Q ss_pred eeeHHHHHHHHHcCC
Q 032136 106 QISSTRIRDCICRGL 120 (146)
Q Consensus 106 ~iSST~IR~~l~~g~ 120 (146)
.||||.||+.|++|.
T Consensus 164 ~ISST~IR~~L~~G~ 178 (308)
T 3op1_A 164 KISSTRIRQAILDGN 178 (308)
T ss_dssp BCCHHHHHHHHHHTC
T ss_pred eEeHHHHHHHHHcCC
Confidence 799999999999985
No 32
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=80.27 E-value=0.75 Score=36.09 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=14.4
Q ss_pred ceeeHHHHHHHHHcCC
Q 032136 105 NQISSTRIRDCICRGL 120 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~ 120 (146)
..||||.||+++++|.
T Consensus 160 ~~ISST~IR~~L~~G~ 175 (338)
T 2x0k_A 160 VRISSTTVREFLSEGD 175 (338)
T ss_dssp EECSHHHHHHHHHTTC
T ss_pred cccccchHHHHHhcCc
Confidence 4799999999999985
No 33
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=75.47 E-value=0.57 Score=31.84 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=3.9
Q ss_pred CeEEEecCCC---ceeeHHHHHHHHHcCC
Q 032136 95 NIKLVDELVP---NQISSTRIRDCICRGL 120 (146)
Q Consensus 95 ~i~~l~~~~~---~~iSST~IR~~l~~g~ 120 (146)
.+.+++ ... ..||||.||+++.++.
T Consensus 112 ~v~vv~-~~~~~~~~iSST~IR~~i~~~~ 139 (143)
T 3glv_A 112 TVKIVR-ISKYDGQLNSSSSVRKKIMELI 139 (143)
T ss_dssp CCEEEE-CCCCC-----------------
T ss_pred eEEEEE-eeccCCCcCCHHHHHHHHHHHh
Confidence 455554 222 4699999999998753
No 34
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=69.62 E-value=0.5 Score=36.91 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=23.4
Q ss_pred CceeeHHHHHHHHHcCCCCCccChHHHHHHHHh
Q 032136 104 PNQISSTRIRDCICRGLSIKYLTEDKVIDYIRE 136 (146)
Q Consensus 104 ~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~ 136 (146)
...||||.||+... .+..+||..|..|+.+
T Consensus 142 ~~~iSsT~IRe~~~---~~~~~v~~~v~~~lg~ 171 (365)
T 1lw7_A 142 FFNVSATKIRTTPF---QYWKFIPKEARPFFAK 171 (365)
T ss_dssp SSCCCHHHHHHCGG---GGGGGSCTTTGGGTCE
T ss_pred CCCCCHHHHHhChh---hChhhCCHHHHHhhhC
Confidence 36899999999753 3567899999887754
No 35
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=69.21 E-value=4.4 Score=34.44 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=27.0
Q ss_pred ceeeHHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 032136 105 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 136 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i-~~lvp~~V~~YI~~ 136 (146)
..||.|++|+++++|..+ ..+.-|+|.+-|.+
T Consensus 584 ~~isgt~~R~~l~~G~~pP~~f~rpev~~~l~~ 616 (630)
T 1x6v_B 584 EFISGTRMRKLAREGQKPPEGFMAPKAWTVLTE 616 (630)
T ss_dssp ECCCHHHHHHHHHTTCCCCTTSSCHHHHHHHHH
T ss_pred eecCHHHHHHHHHCCCCCCcccCcHHHHHHHHH
Confidence 489999999999999865 56778888888775
No 36
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=62.03 E-value=1.6 Score=31.18 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCccChHHHHHHHHh--cCC
Q 032136 122 IKYLTEDKVIDYIRE--SRL 139 (146)
Q Consensus 122 i~~lvp~~V~~YI~~--~~L 139 (146)
.+.-||++|++||++ ||+
T Consensus 99 ak~~LP~dVI~Ymrd~~NgI 118 (192)
T 1xou_A 99 AKAQLPDEVISYINDPRNDI 118 (192)
T ss_dssp --------------------
T ss_pred ccccCCHHHHHHHHccCCCe
Confidence 356799999999999 876
No 37
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=54.39 E-value=4 Score=25.84 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=16.5
Q ss_pred CccChHHHHHHHHhcCCCCCC
Q 032136 123 KYLTEDKVIDYIRESRLYLNS 143 (146)
Q Consensus 123 ~~lvp~~V~~YI~~~~LY~~~ 143 (146)
+.-|-..+++||++|+|....
T Consensus 29 r~evvk~lW~YIK~n~Lqdp~ 49 (93)
T 1v31_A 29 RPRIIAAIWHYVKARKLQNPN 49 (93)
T ss_dssp SHHHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHHHHHHHHHHccCcCcc
Confidence 345677899999999998654
No 38
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=53.09 E-value=6 Score=25.51 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=16.7
Q ss_pred CccChHHHHHHHHhcCCCCCC
Q 032136 123 KYLTEDKVIDYIRESRLYLNS 143 (146)
Q Consensus 123 ~~lvp~~V~~YI~~~~LY~~~ 143 (146)
+.-|-..+++||++|+|....
T Consensus 37 R~eVvk~lW~YIK~nnLQdp~ 57 (101)
T 1v32_A 37 RYDVSDTIAKYISKEGLLDPS 57 (101)
T ss_dssp HHHHHHHHHHHHHHHTCBCSS
T ss_pred HHHHHHHHHHHHHhhcCcCcc
Confidence 345677899999999998654
No 39
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=50.79 E-value=12 Score=23.56 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 110 TRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 110 T~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
..||+++++|++ .++|++|+.++
T Consensus 47 ~~Vre~l~~G~S-----d~eI~~~mv~R 69 (90)
T 2kw0_A 47 QKVYELMQEGKS-----KKEIVDYMVAR 69 (90)
T ss_dssp HHHHHHHHHTCC-----HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-----HHHHHHHHHHh
Confidence 357888899985 78999999864
No 40
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=50.59 E-value=13 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCCCccChHHHHHHHHhc
Q 032136 110 TRIRDCICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 110 T~IR~~l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
..||+++++|++ .++|.+|+.++
T Consensus 50 ~~V~~~l~~G~s-----d~eI~~~~v~R 72 (84)
T 2hl7_A 50 KQIYGQLQQGKS-----DGEIVDYMVAR 72 (84)
T ss_dssp HHHHHHHHHTCC-----HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-----HHHHHHHHHHh
Confidence 367888899885 78999999864
No 41
>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}
Probab=48.86 E-value=8 Score=27.06 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCC
Q 032136 12 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFA 50 (146)
Q Consensus 12 yT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~ 50 (146)
-|.+.|+.++++||+ .++.++-+.|+..-|+
T Consensus 14 Gt~~~L~~i~~~~~~--------~~l~l~~~~~~~~l~~ 44 (172)
T 3tvz_A 14 GTADFLKTIVKKHPS--------ENILLMQGQENAILIH 44 (172)
T ss_dssp ECHHHHHHHHHHCTT--------SEEEEEEESSCEEEEE
T ss_pred CCHHHHHHHHHHCCC--------CceEEEEcCCceEEEE
Confidence 478999999999999 8999999999876554
No 42
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=41.20 E-value=14 Score=23.24 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=15.2
Q ss_pred cChHHHHHHHHhcCCCCCC
Q 032136 125 LTEDKVIDYIRESRLYLNS 143 (146)
Q Consensus 125 lvp~~V~~YI~~~~LY~~~ 143 (146)
-|-..+++||++|+|....
T Consensus 31 evvk~lW~YIK~n~Lqdp~ 49 (93)
T 1uhr_A 31 VIIQALWQYIKTHKLQDPH 49 (93)
T ss_dssp HHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHHHHHHHhccCCCcc
Confidence 4567899999999998643
No 43
>4ae5_A Signal transduction protein trap; signaling protein, phosphorylation, RNAIII, quorum SENS biofilm, toxin production; 1.85A {Staphylococcus aureus}
Probab=35.94 E-value=17 Score=25.39 Aligned_cols=31 Identities=19% Similarity=0.103 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCC
Q 032136 12 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFA 50 (146)
Q Consensus 12 yT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~ 50 (146)
-|.+.|+.++++||+ .+++++-+.|+..-|+
T Consensus 9 Gt~~~L~~I~~~~~~--------r~l~l~~~~d~s~L~e 39 (167)
T 4ae5_A 9 GTYGFLHQIKINNPT--------HQLFQFSASDTSVIFE 39 (167)
T ss_dssp ECHHHHHHHHHHCTT--------SCCEEEECSSSEEEEE
T ss_pred CCHHHHHHHHHHCCC--------CceEEEEcCCceEEEE
Confidence 488999999999999 8898888888776554
No 44
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=35.14 E-value=16 Score=30.23 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=19.2
Q ss_pred ceeeHHHHHHH-HHcCCCC-CccChHHHHHHHHh
Q 032136 105 NQISSTRIRDC-ICRGLSI-KYLTEDKVIDYIRE 136 (146)
Q Consensus 105 ~~iSST~IR~~-l~~g~~i-~~lvp~~V~~YI~~ 136 (146)
..||+|.||++ ++.|..+ ..+..++|.+-+++
T Consensus 330 ~~iSgt~iR~~~L~~g~~~p~~~~r~eV~~~lr~ 363 (546)
T 2gks_A 330 INISGTEIRENFLKQGRKLPEWFTRPEVAEILAE 363 (546)
T ss_dssp -------CTHHHHTTTCCCCTTTSCHHHHHHHHH
T ss_pred eecchhhhhhhhhcCCCCCCccccchhHHHHHHH
Confidence 47999999999 9999877 44555777777665
No 45
>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*
Probab=35.14 E-value=22 Score=25.37 Aligned_cols=30 Identities=17% Similarity=0.034 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhC
Q 032136 12 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESF 49 (146)
Q Consensus 12 yT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l 49 (146)
-|.+.|+.++++||+ .++.++-+.|...-|
T Consensus 28 Gt~~~L~~I~~~~~d--------r~l~l~~~~~~~~L~ 57 (186)
T 3fj2_A 28 GTEHYLRQLMENYIG--------ENVTLLQNFSQSLLY 57 (186)
T ss_dssp ECHHHHHHHHHHTCS--------SSEEEEECSSCEEEE
T ss_pred CCHHHHHHHHHHCCC--------CceEEEEcCCccEEE
Confidence 478999999999998 899999998886543
No 46
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=34.40 E-value=11 Score=27.79 Aligned_cols=94 Identities=9% Similarity=0.087 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHhhhcccCcCCCceEEEEeehhhhhhCCCCCCCchhHHHhhhcceeEEEEecCCCChhhhccchHHhhh
Q 032136 12 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDK 91 (146)
Q Consensus 12 yT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~w~~W~~~~~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~ 91 (146)
-..+.++.+++.+|+ .++|+.++.+.. .|. .-+..-++|||.+ +.+.+-. ....+
T Consensus 71 ~a~e~I~~l~~~~~~------------~~iGaGTVlt~~---~a~----~Ai~AGA~fIvsP--~~~~~vi----~~~~~ 125 (232)
T 4e38_A 71 AAVEAIRLLRQAQPE------------MLIGAGTILNGE---QAL----AAKEAGATFVVSP--GFNPNTV----RACQE 125 (232)
T ss_dssp THHHHHHHHHHHCTT------------CEEEEECCCSHH---HHH----HHHHHTCSEEECS--SCCHHHH----HHHHH
T ss_pred CHHHHHHHHHHhCCC------------CEEeECCcCCHH---HHH----HHHHcCCCEEEeC--CCCHHHH----HHHHH
Confidence 467888999999975 578888877655 564 3456788999864 4433221 11111
Q ss_pred cCCCeEEEecCCCceeeHHHHHHHHHcCCCCCccChHHH---HHHHHh
Q 032136 92 NKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDYIRE 136 (146)
Q Consensus 92 ~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V---~~YI~~ 136 (146)
.++.++. . -.+.|++.++++.|-++-.+.|-+. .+||+.
T Consensus 126 --~gi~~ip-G---v~TptEi~~A~~~Gad~vK~FPa~~~gG~~~lka 167 (232)
T 4e38_A 126 --IGIDIVP-G---VNNPSTVEAALEMGLTTLKFFPAEASGGISMVKS 167 (232)
T ss_dssp --HTCEEEC-E---ECSHHHHHHHHHTTCCEEEECSTTTTTHHHHHHH
T ss_pred --cCCCEEc-C---CCCHHHHHHHHHcCCCEEEECcCccccCHHHHHH
Confidence 2455553 2 2389999999999987666666433 366664
No 47
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=30.91 E-value=42 Score=27.85 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=24.0
Q ss_pred ceeeHHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 032136 105 NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 136 (146)
Q Consensus 105 ~~iSST~IR~~l~~g~~i-~~lvp~~V~~YI~~ 136 (146)
..+|+|+||++++.|..+ ..+..+.|.+-+++
T Consensus 328 ~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~ 360 (552)
T 3cr8_A 328 LTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHR 360 (552)
T ss_dssp ECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCccccccchhhhhhh
Confidence 579999999999999876 33443667766554
No 48
>2jqt_A H-NS/STPA-binding protein 2; CNU, YDGT, replication origin associated, ORIC, protein binding; NMR {Escherichia coli}
Probab=29.60 E-value=25 Score=21.09 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=5.9
Q ss_pred HHHHHHcCCCCCc--cChHHHHHHHH
Q 032136 112 IRDCICRGLSIKY--LTEDKVIDYIR 135 (146)
Q Consensus 112 IR~~l~~g~~i~~--lvp~~V~~YI~ 135 (146)
=|..+..|..+-. -||.+|+.|++
T Consensus 46 RrAEl~~~gkLyD~~kVP~~VW~yV~ 71 (71)
T 2jqt_A 46 RRAELVSGGRLFDLGQVPKSVWHYVQ 71 (71)
T ss_dssp HHHHHHTTCCCC--------------
T ss_pred HHHHHhcCCcccccccCCHHHhhhcC
Confidence 3455666433433 79999999974
No 49
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=27.66 E-value=19 Score=21.79 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.5
Q ss_pred HHcCCCCCccChHHHHHHHHhc
Q 032136 116 ICRGLSIKYLTEDKVIDYIRES 137 (146)
Q Consensus 116 l~~g~~i~~lvp~~V~~YI~~~ 137 (146)
..+|.++..+|-+.|.+|+.+|
T Consensus 54 a~~g~Smsdvvreli~~~L~~~ 75 (76)
T 1p94_A 54 ARKGTSITDVVNQLVDNWLKEN 75 (76)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHhc
Confidence 4569999999999999999887
No 50
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=25.79 E-value=2.6 Score=28.89 Aligned_cols=14 Identities=43% Similarity=0.394 Sum_probs=8.9
Q ss_pred ceeeHHHHHHHHHc
Q 032136 105 NQISSTRIRDCICR 118 (146)
Q Consensus 105 ~~iSST~IR~~l~~ 118 (146)
..||||.||+++.+
T Consensus 129 ~~iSST~IR~~~id 142 (148)
T 3do8_A 129 KPISSTRIKRGEID 142 (148)
T ss_dssp ---CCCCCCCSCCC
T ss_pred CEEEHHHHHHHHHh
Confidence 46999999987643
No 51
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=25.69 E-value=1.3e+02 Score=20.90 Aligned_cols=81 Identities=14% Similarity=0.143 Sum_probs=40.9
Q ss_pred CCchh---HHHhhhcceeEEEEecCC-C-ChhhhccchHHhhhcCCCeEEEecCCCceeeHHH--HHHHHHc----CCCC
Q 032136 54 FWMPE---QVWTICRNFGVICIRREG-Q-DVEKIISDNEILDKNKGNIKLVDELVPNQISSTR--IRDCICR----GLSI 122 (146)
Q Consensus 54 ~W~~~---~~~~l~~~~~~iV~~R~g-~-~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~--IR~~l~~----g~~i 122 (146)
+|... ....|++.|+.++.-... + .+.........+-.....+..+-+... . .+|. ++.+.+. |..+
T Consensus 87 ~w~~~~~~~y~~ll~~aD~v~~l~~~~y~~~~~~~~rn~~mvd~sD~liavyDg~~-~-GgT~~~v~~A~~~~~~~~~pv 164 (181)
T 2nx2_A 87 NWKEPNKEQYEAVLAQADYEASLTHRPYESPLQFKQKNQFFIDKSDGLLLLYDPEK-E-GSPKYMLGTAEKRREQDGYPI 164 (181)
T ss_dssp TSCHHHHHHHHHHHHHCSEEEESSSSBCCCHHHHHHHHHHHHHHSSEEEEECCTTT-C-CTTHHHHHHHHHHHHHHCCCE
T ss_pred CCCHHHHHHHHHHHHhCCeEEecccCCCCCHHHHHHHHHHHHHHCCEEEEEEcCCC-C-CCHHHHHHHHHHhccccCCeE
Confidence 57642 247788899987754432 2 222211111222223334444421211 2 4555 6666554 6887
Q ss_pred CccChHHHHHHHHh
Q 032136 123 KYLTEDKVIDYIRE 136 (146)
Q Consensus 123 ~~lvp~~V~~YI~~ 136 (146)
.-+-|+...+.+.+
T Consensus 165 ~~I~~~~l~~~~~~ 178 (181)
T 2nx2_A 165 YFITMDDLRVTVEE 178 (181)
T ss_dssp EEECHHHHHHHHHC
T ss_pred EEEcHHHHHHHHhc
Confidence 77777776666654
No 52
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=25.25 E-value=2.1e+02 Score=21.78 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=41.1
Q ss_pred HHhhhcceeEEEEecCCCChhhhccchHHhhhcCCCeEEEecCCCceeeHHHHHHHHHcCC
Q 032136 60 VWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGL 120 (146)
Q Consensus 60 ~~~l~~~~~~iV~~R~g~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~ 120 (146)
+++|++.+++|++.=|..+.....-..+.+...+.+..+++...---|--..+-+++++|+
T Consensus 188 l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~ 248 (334)
T 3kb6_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGK 248 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTC
T ss_pred HHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCC
Confidence 5889999999999866543222111234566667778888633335677778888898885
No 53
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=21.47 E-value=84 Score=23.18 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHhhhcccCcCCCceEEEEeehhh
Q 032136 12 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 45 (146)
Q Consensus 12 yT~~tL~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 45 (146)
.|.-.++.|++.||+ +++.++++...
T Consensus 16 ~~~p~l~~Lk~~~P~--------a~I~~l~~~~~ 41 (326)
T 2gt1_A 16 HTLPALTDAQQAIPG--------IKFDWVVEEGF 41 (326)
T ss_dssp HHHHHHHHHHHHSTT--------CEEEEEEEGGG
T ss_pred hHHHHHHHHHHhCCC--------CEEEEEEehhh
Confidence 566778999999999 99999998653
Done!