Your job contains 1 sequence.
>032138
MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA
LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL
MMLKGDPSYVSHFELDQRLFLLMRKL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032138
(146 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2097468 - symbol:NRPB8B "AT3G59600" species:37... 602 1.2e-58 1
TAIR|locus:2020188 - symbol:NRPB8A "AT1G54250" species:37... 601 1.5e-58 1
FB|FBgn0037121 - symbol:Rpb8 "Rpb8" species:7227 "Drosoph... 389 4.4e-36 1
ZFIN|ZDB-GENE-050417-66 - symbol:zgc:110289 "zgc:110289" ... 384 1.5e-35 1
UNIPROTKB|E1BSD8 - symbol:POLR2H "Uncharacterized protein... 373 2.2e-34 1
UNIPROTKB|F2Z4H3 - symbol:POLR2H "Uncharacterized protein... 373 2.2e-34 1
UNIPROTKB|C9JLU1 - symbol:POLR2H "DNA-directed RNA polyme... 373 2.2e-34 1
UNIPROTKB|P52434 - symbol:POLR2H "DNA-directed RNA polyme... 373 2.2e-34 1
UNIPROTKB|I3LCB2 - symbol:POLR2H "Uncharacterized protein... 373 2.2e-34 1
MGI|MGI:2384309 - symbol:Polr2h "polymerase (RNA) II (DNA... 373 2.2e-34 1
UNIPROTKB|G3V678 - symbol:Polr2h "Protein Polr2h" species... 373 2.2e-34 1
DICTYBASE|DDB_G0278039 - symbol:rpb8 "RNA polymerase II c... 350 6.0e-32 1
WB|WBGene00017830 - symbol:rpb-8 species:6239 "Caenorhabd... 330 7.9e-30 1
UNIPROTKB|Q19826 - symbol:rpb-8 "Probable DNA-directed RN... 330 7.9e-30 1
UNIPROTKB|C9JCU7 - symbol:POLR2H "DNA-directed RNA polyme... 273 8.7e-24 1
UNIPROTKB|C9JBJ6 - symbol:POLR2H "DNA-directed RNA polyme... 270 1.8e-23 1
ASPGD|ASPL0000059551 - symbol:AN0192 species:162425 "Emer... 257 4.3e-22 1
UNIPROTKB|G4MSN8 - symbol:MGG_07080 "UDP-glucose 4-epimer... 245 8.0e-21 1
SGD|S000005750 - symbol:RPB8 "RNA polymerase subunit ABC1... 232 1.9e-19 1
CGD|CAL0001261 - symbol:RPB8 species:5476 "Candida albica... 226 8.3e-19 1
UNIPROTKB|Q59MZ8 - symbol:RPB8 "Putative uncharacterized ... 226 8.3e-19 1
UNIPROTKB|C9J413 - symbol:POLR2H "DNA-directed RNA polyme... 219 4.6e-18 1
RGD|1561203 - symbol:Polr2h "polymerase (RNA) II (DNA dir... 215 1.2e-17 1
GENEDB_PFALCIPARUM|PFL0665c - symbol:PFL0665c "RNA polyme... 209 5.3e-17 1
UNIPROTKB|Q8I5R8 - symbol:PFL0665c "RNA polymerase subuni... 209 5.3e-17 1
POMBASE|SPBC14C8.12 - symbol:rpb8 "DNA-directed RNA polym... 137 2.2e-09 1
UNIPROTKB|C9JUA8 - symbol:POLR2H "DNA-directed RNA polyme... 122 8.7e-08 1
>TAIR|locus:2097468 [details] [associations]
symbol:NRPB8B "AT3G59600" species:3702 "Arabidopsis
thaliana" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IPI]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL138659
GO:GO:0005665 eggNOG:NOG279425 HOGENOM:HOG000175572 KO:K03016
PANTHER:PTHR10917 HSSP:P20436 ProtClustDB:CLSN2682401 EMBL:AY086002
EMBL:BT008531 EMBL:AK119016 IPI:IPI00535106 PIR:T49301
RefSeq:NP_191519.1 UniGene:At.34608 ProteinModelPortal:Q9M1A8
SMR:Q9M1A8 IntAct:Q9M1A8 STRING:Q9M1A8 PaxDb:Q9M1A8 PRIDE:Q9M1A8
EnsemblPlants:AT3G59600.1 GeneID:825129 KEGG:ath:AT3G59600
TAIR:At3g59600 InParanoid:Q9M1A8 OMA:TITSDIN PhylomeDB:Q9M1A8
Genevestigator:Q9M1A8 Uniprot:Q9M1A8
Length = 146
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 110/145 (75%), Positives = 134/145 (92%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNI++FEDIFVV+K+DPDGKKFDKV+R+EA S N +M+M LDVN+E+YP+ VGDKFT+A+
Sbjct: 3 SNIIMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAM 62
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLM 121
A TLNLDGTPDTGY+TPGA+KTLADKYEYIMHGKL+KI E GK+ KAE+YVS+GGLLM
Sbjct: 63 APTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKAELYVSFGGLLM 121
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
+L+GDP+++SHFELDQRLFLLMRKL
Sbjct: 122 LLQGDPAHISHFELDQRLFLLMRKL 146
>TAIR|locus:2020188 [details] [associations]
symbol:NRPB8A "AT1G54250" species:3702 "Arabidopsis
thaliana" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IPI]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006351 EMBL:AC005287
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005665
eggNOG:NOG279425 HOGENOM:HOG000175572 KO:K03016 OMA:SFKMELI
PANTHER:PTHR10917 HSSP:P20436 EMBL:AF017074 EMBL:AY086894
EMBL:BT004791 EMBL:AK227855 IPI:IPI00521153 PIR:T52270
RefSeq:NP_175827.1 UniGene:At.21061 ProteinModelPortal:O81097
SMR:O81097 IntAct:O81097 STRING:O81097 PaxDb:O81097 PRIDE:O81097
EnsemblPlants:AT1G54250.1 GeneID:841866 KEGG:ath:AT1G54250
TAIR:At1g54250 InParanoid:O81097 PhylomeDB:O81097
ProtClustDB:CLSN2682401 Genevestigator:O81097 Uniprot:O81097
Length = 146
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 111/145 (76%), Positives = 134/145 (92%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNI+LFEDIFVV+++DPDGKKFDKV+R++A S N +M+M LDVN+E+YP+ VGDKFT+AL
Sbjct: 3 SNIILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLAL 62
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLM 121
A TLNLDGTPDTGY+TPGA+KTLADKYEYIMHGKL+KI E GK+ KAE+YVS+GGLLM
Sbjct: 63 APTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKAELYVSFGGLLM 121
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
+LKGDP+++SHFELDQRLFLLMRKL
Sbjct: 122 LLKGDPAHISHFELDQRLFLLMRKL 146
>FB|FBgn0037121 [details] [associations]
symbol:Rpb8 "Rpb8" species:7227 "Drosophila melanogaster"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0007095 "mitotic G2 DNA damage
checkpoint" evidence=IGI] InterPro:IPR005570 Pfam:PF03870
PIRSF:PIRSF000779 SMART:SM00658 GO:GO:0007095 EMBL:AE014296
GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0003899 GO:GO:0005665 eggNOG:NOG279425
GeneTree:ENSGT00390000018195 KO:K03016 OMA:SFKMELI
PANTHER:PTHR10917 EMBL:AY060855 RefSeq:NP_649352.1 UniGene:Dm.1045
HSSP:P20436 SMR:Q9VNZ3 STRING:Q9VNZ3 EnsemblMetazoa:FBtr0078432
GeneID:40415 KEGG:dme:Dmel_CG11246 UCSC:CG11246-RA CTD:40415
FlyBase:FBgn0037121 InParanoid:Q9VNZ3 OrthoDB:EOG4X3FHN
GenomeRNAi:40415 NextBio:818662 Uniprot:Q9VNZ3
Length = 149
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 74/144 (51%), Positives = 106/144 (73%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLMM 122
L DG PD+G Y P + T AD +EY+M+GK+++I GDE ++ + YVS+GGLLM
Sbjct: 64 LREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAYVSFGGLLMR 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+DQ ++LLM++L
Sbjct: 124 LQGDANNLHGFEVDQHMYLLMKRL 147
>ZFIN|ZDB-GENE-050417-66 [details] [associations]
symbol:zgc:110289 "zgc:110289" species:7955 "Danio
rerio" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
ZFIN:ZDB-GENE-050417-66 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:NOG279425
GeneTree:ENSGT00390000018195 HOGENOM:HOG000175572 KO:K03016
OMA:SFKMELI PANTHER:PTHR10917 HOVERGEN:HBG036116 OrthoDB:EOG4CNQSB
EMBL:CABZ01045212 EMBL:BC092853 IPI:IPI00570343
RefSeq:NP_001017600.1 UniGene:Dr.55140 SMR:Q568H8 STRING:Q568H8
Ensembl:ENSDART00000056188 GeneID:550263 KEGG:dre:550263
InParanoid:Q568H8 NextBio:20879526 Uniprot:Q568H8
Length = 150
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 75/145 (51%), Positives = 108/145 (74%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L DGTPD G Y P R + AD+++Y+M+GK+++I GDE S ++ + YVSYGGLLM
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRADQFDYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>UNIPROTKB|E1BSD8 [details] [associations]
symbol:POLR2H "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
GO:GO:0005737 GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005665
GeneTree:ENSGT00390000018195 KO:K03016 OMA:SFKMELI
PANTHER:PTHR10917 CTD:5437 EMBL:AADN02020704 IPI:IPI00578643
RefSeq:XP_422761.1 UniGene:Gga.12379 ProteinModelPortal:E1BSD8
SMR:E1BSD8 PRIDE:E1BSD8 Ensembl:ENSGALT00000013907 GeneID:424954
KEGG:gga:424954 NextBio:20827213 Uniprot:E1BSD8
Length = 150
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 74/145 (51%), Positives = 107/145 (73%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>UNIPROTKB|F2Z4H3 [details] [associations]
symbol:POLR2H "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
GO:GO:0005737 GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005665
GeneTree:ENSGT00390000018195 KO:K03016 OMA:SFKMELI
PANTHER:PTHR10917 CTD:5437 EMBL:DAAA02001883 IPI:IPI00685231
RefSeq:NP_001178994.1 UniGene:Bt.106863 ProteinModelPortal:F2Z4H3
SMR:F2Z4H3 PRIDE:F2Z4H3 Ensembl:ENSBTAT00000000606 GeneID:505599
KEGG:bta:505599 NextBio:20867221 ArrayExpress:F2Z4H3 Uniprot:F2Z4H3
Length = 150
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 74/145 (51%), Positives = 107/145 (73%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>UNIPROTKB|C9JLU1 [details] [associations]
symbol:POLR2H "DNA-directed RNA polymerases I, II, and III
subunit RPABC3" species:9606 "Homo sapiens" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
GO:GO:0005634 GO:GO:0005737 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC078797
HOGENOM:HOG000175572 PANTHER:PTHR10917 HGNC:HGNC:9195
ChiTaRS:POLR2H IPI:IPI00927876 ProteinModelPortal:C9JLU1 SMR:C9JLU1
STRING:C9JLU1 Ensembl:ENST00000455712 ArrayExpress:C9JLU1
Bgee:C9JLU1 Uniprot:C9JLU1
Length = 149
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 74/145 (51%), Positives = 107/145 (73%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>UNIPROTKB|P52434 [details] [associations]
symbol:POLR2H "DNA-directed RNA polymerases I, II, and III
subunit RPABC3" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=NAS] [GO:0004672 "protein
kinase activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA;TAS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
GO:GO:0005737 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0005730
GO:GO:0008270 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434
GO:GO:0006363 GO:GO:0006362 GO:GO:0006361 GO:GO:0006283
Reactome:REACT_1892 GO:GO:0003899 GO:GO:0006386 GO:GO:0006385
GO:GO:0005665 eggNOG:NOG279425 HOGENOM:HOG000175572 KO:K03016
PANTHER:PTHR10917 EMBL:U37689 EMBL:Z49199 EMBL:AJ252079
EMBL:AJ252080 EMBL:BC000739 IPI:IPI00003309 PIR:S55370
RefSeq:NP_006223.2 UniGene:Hs.432574 PDB:2F3I PDBsum:2F3I
ProteinModelPortal:P52434 SMR:P52434 DIP:DIP-27556N IntAct:P52434
MINT:MINT-1162805 STRING:P52434 PhosphoSite:P52434 DMDM:20178325
PaxDb:P52434 PeptideAtlas:P52434 PRIDE:P52434 DNASU:5437
Ensembl:ENST00000296223 Ensembl:ENST00000456318 GeneID:5437
KEGG:hsa:5437 UCSC:uc003fok.2 CTD:5437 GeneCards:GC03P184079
HGNC:HGNC:9195 HPA:HPA037745 MIM:606023 neXtProt:NX_P52434
PharmGKB:PA33515 HOVERGEN:HBG036116 InParanoid:P52434
OrthoDB:EOG4CNQSB PhylomeDB:P52434 ChiTaRS:POLR2H
EvolutionaryTrace:P52434 GenomeRNAi:5437 NextBio:21037
ArrayExpress:P52434 Bgee:P52434 CleanEx:HS_POLR2H
Genevestigator:P52434 GermOnline:ENSG00000163882 Uniprot:P52434
Length = 150
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 74/145 (51%), Positives = 107/145 (73%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>UNIPROTKB|I3LCB2 [details] [associations]
symbol:POLR2H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
GO:GO:0005737 GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005665
GeneTree:ENSGT00390000018195 KO:K03016 OMA:SFKMELI
PANTHER:PTHR10917 CTD:5437 EMBL:FP236341 RefSeq:NP_001230270.1
UniGene:Ssc.36331 ProteinModelPortal:I3LCB2 SMR:I3LCB2 PRIDE:I3LCB2
Ensembl:ENSSSCT00000026408 GeneID:100628241 KEGG:ssc:100628241
Uniprot:I3LCB2
Length = 150
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 74/145 (51%), Positives = 107/145 (73%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>MGI|MGI:2384309 [details] [associations]
symbol:Polr2h "polymerase (RNA) II (DNA directed)
polypeptide H" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
MGI:MGI:2384309 GO:GO:0005737 GO:GO:0005730 GO:GO:0004672
GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0003899 GO:GO:0005665 eggNOG:NOG279425
GeneTree:ENSGT00390000018195 HOGENOM:HOG000175572 KO:K03016
OMA:SFKMELI PANTHER:PTHR10917 CTD:5437 HOVERGEN:HBG036116
OrthoDB:EOG4CNQSB ChiTaRS:POLR2H EMBL:AK161617 EMBL:AK146429
EMBL:BC002306 EMBL:BC092087 EMBL:BC125612 EMBL:BC125638
IPI:IPI00124284 RefSeq:NP_663607.1 UniGene:Mm.288730
ProteinModelPortal:Q923G2 SMR:Q923G2 STRING:Q923G2
PhosphoSite:Q923G2 PaxDb:Q923G2 PRIDE:Q923G2
Ensembl:ENSMUST00000021405 GeneID:245841 KEGG:mmu:245841
UCSC:uc007yqz.1 InParanoid:Q923G2 NextBio:386950 Bgee:Q923G2
CleanEx:MM_POLR2H Genevestigator:Q923G2
GermOnline:ENSMUSG00000021018 Uniprot:Q923G2
Length = 150
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 74/145 (51%), Positives = 107/145 (73%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>UNIPROTKB|G3V678 [details] [associations]
symbol:Polr2h "Protein Polr2h" species:10116 "Rattus
norvegicus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779
SMART:SM00658 RGD:1561203 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CH473999
GeneTree:ENSGT00390000018195 KO:K03016 OMA:SFKMELI
PANTHER:PTHR10917 CTD:5437 RefSeq:NP_001128261.1
RefSeq:XP_003751131.1 UniGene:Rn.226389 UniGene:Rn.9160
ProteinModelPortal:G3V678 SMR:G3V678 PRIDE:G3V678
Ensembl:ENSRNOT00000002382 GeneID:100912534 GeneID:498109
KEGG:rno:100912534 KEGG:rno:498109 NextBio:698719 Uniprot:G3V678
Length = 150
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 74/145 (51%), Positives = 107/145 (73%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>DICTYBASE|DDB_G0278039 [details] [associations]
symbol:rpb8 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II,
core complex" evidence=ISS] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779
SMART:SM00658 dictyBase:DDB_G0278039 GenomeReviews:CM000152_GR
EMBL:AAFI02000023 GO:GO:0006366 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0006360
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 GO:GO:0005665
eggNOG:NOG279425 KO:K03016 OMA:SFKMELI PANTHER:PTHR10917
RefSeq:XP_642084.1 HSSP:P52434 ProteinModelPortal:Q54YW8
STRING:Q54YW8 PRIDE:Q54YW8 EnsemblProtists:DDB0216297
GeneID:8621297 KEGG:ddi:DDB_G0278039 ProtClustDB:CLSZ2497237
Uniprot:Q54YW8
Length = 142
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 68/142 (47%), Positives = 103/142 (72%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFED F V++IDPDGKKFD+VSR +S+N +M + +D+ + +YP+ ++F M LA +
Sbjct: 4 ILFEDTFEVKEIDPDGKKFDRVSRFVCYSENYEMDLQIDIATHIYPLG-HERFKMVLASS 62
Query: 65 LNLDGTPD-TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMML 123
LNLDG+ D +G Y + +LADKY+Y+M+GK+FK E S S K ++ S+GGLL++L
Sbjct: 63 LNLDGSSDNSGSYDTN-KPSLADKYDYVMYGKIFKYQKENS--SSKVSVFASFGGLLVLL 119
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
+GDP Y+ ELD R++LL++K
Sbjct: 120 QGDPRYLPGIELDARIYLLIKK 141
>WB|WBGene00017830 [details] [associations]
symbol:rpb-8 species:6239 "Caenorhabditis elegans"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040039 "inductive
cell migration" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779
SMART:SM00658 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0040018 GO:GO:0006351
GO:GO:0040035 GO:GO:0040039 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0003899 EMBL:FO080682 PIR:T16177
RefSeq:NP_498036.1 ProteinModelPortal:Q19826 SMR:Q19826
DIP:DIP-26518N IntAct:Q19826 MINT:MINT-1069373 STRING:Q19826
PaxDb:Q19826 EnsemblMetazoa:F26F4.11 GeneID:175660
KEGG:cel:CELE_F26F4.11 CTD:175660 WormBase:F26F4.11
eggNOG:NOG279425 GeneTree:ENSGT00390000018195 HOGENOM:HOG000175572
InParanoid:Q19826 KO:K03016 OMA:SFKMELI NextBio:889104
PANTHER:PTHR10917 Uniprot:Q19826
Length = 148
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 61/142 (42%), Positives = 95/142 (66%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DK + LA T
Sbjct: 4 IIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKVRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSL-KAEIYVSYGGLLMML 123
L DG D G Y P A +YEY+M+GK++++ D+ +G K Y S+GGLLM L
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTGTDGGKLAAYASFGGLLMRL 123
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
KG+ + FE+D L+LLM+K
Sbjct: 124 KGEAINLHGFEVDMNLYLLMKK 145
>UNIPROTKB|Q19826 [details] [associations]
symbol:rpb-8 "Probable DNA-directed RNA polymerases I, II,
and III subunit RPABC3" species:6239 "Caenorhabditis elegans"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR005570
Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0002119
GO:GO:0040018 GO:GO:0006351 GO:GO:0040035 GO:GO:0040039
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
EMBL:FO080682 PIR:T16177 RefSeq:NP_498036.1
ProteinModelPortal:Q19826 SMR:Q19826 DIP:DIP-26518N IntAct:Q19826
MINT:MINT-1069373 STRING:Q19826 PaxDb:Q19826
EnsemblMetazoa:F26F4.11 GeneID:175660 KEGG:cel:CELE_F26F4.11
CTD:175660 WormBase:F26F4.11 eggNOG:NOG279425
GeneTree:ENSGT00390000018195 HOGENOM:HOG000175572 InParanoid:Q19826
KO:K03016 OMA:SFKMELI NextBio:889104 PANTHER:PTHR10917
Uniprot:Q19826
Length = 148
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 61/142 (42%), Positives = 95/142 (66%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DK + LA T
Sbjct: 4 IIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKVRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSL-KAEIYVSYGGLLMML 123
L DG D G Y P A +YEY+M+GK++++ D+ +G K Y S+GGLLM L
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTGTDGGKLAAYASFGGLLMRL 123
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
KG+ + FE+D L+LLM+K
Sbjct: 124 KGEAINLHGFEVDMNLYLLMKK 145
>UNIPROTKB|C9JCU7 [details] [associations]
symbol:POLR2H "DNA-directed RNA polymerases I, II, and III
subunit RPABC3" species:9606 "Homo sapiens" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
GO:GO:0005634 GO:GO:0005737 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC078797
HOGENOM:HOG000175572 PANTHER:PTHR10917 HGNC:HGNC:9195
ChiTaRS:POLR2H IPI:IPI00927044 ProteinModelPortal:C9JCU7 SMR:C9JCU7
STRING:C9JCU7 Ensembl:ENST00000429568 OMA:EIAHARP
ArrayExpress:C9JCU7 Bgee:C9JCU7 Uniprot:C9JCU7
Length = 175
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 53/102 (51%), Positives = 76/102 (74%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGS 104
L DGT D G Y P R + AD++EY+M+GK+++I GDE S
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETS 105
>UNIPROTKB|C9JBJ6 [details] [associations]
symbol:POLR2H "DNA-directed RNA polymerases I, II, and III
subunit RPABC3" species:9606 "Homo sapiens" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR005570
Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC078797
HOGENOM:HOG000175572 PANTHER:PTHR10917 HGNC:HGNC:9195
ChiTaRS:POLR2H IPI:IPI00924545 SMR:C9JBJ6 STRING:C9JBJ6
Ensembl:ENST00000438240 Ensembl:ENST00000452961 Uniprot:C9JBJ6
Length = 114
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 55/112 (49%), Positives = 81/112 (72%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTP-GARKTLADKYEYIMHGKL 96
M ++LDVN ++YP+ +GDKF + +A TL DGT D G Y P R + AD++EY+M+GK+
Sbjct: 1 MDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKV 60
Query: 97 FKI-GDEGSGKSL-KAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
++I GDE S ++ + YVSYGGLLM L+GD + + FE+D R++LLM+KL
Sbjct: 61 YRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKL 112
>ASPGD|ASPL0000059551 [details] [associations]
symbol:AN0192 species:162425 "Emericella nidulans"
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=IEA] [GO:0042797 "tRNA transcription from RNA polymerase
III promoter" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0001055 "RNA polymerase II activity"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779
SMART:SM00658 EMBL:BN001308 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
HOGENOM:HOG000175572 OMA:SFKMELI PANTHER:PTHR10917
EnsemblFungi:CADANIAT00002541 Uniprot:C8VUX0
Length = 145
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 58/149 (38%), Positives = 91/149 (61%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F V ++ + K+D+VSR+ S + LD+NSELYP G+ +MA
Sbjct: 1 MSDPLLFEDTFTVTGVNQE--KYDRVSRLTCTSSDSQTTFTLDINSELYPCTTGESLSMA 58
Query: 61 LAHTLNLDGTPD---TGYYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
LA TL+LDG D TG+ G +TLA+ Y+Y+ HGK+++ +E S +VS+
Sbjct: 59 LASTLSLDGKEDGAKTGWREVGMGEQTLANDYDYVCHGKVYRF-EEASDSPGNMAAFVSF 117
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLL+ L+G ++ +D ++LL++K
Sbjct: 118 GGLLLYLEGPYKKLAPLRIDY-VYLLLKK 145
>UNIPROTKB|G4MSN8 [details] [associations]
symbol:MGG_07080 "UDP-glucose 4-epimerase Gal10"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR005570 Pfam:PF03870
PIRSF:PIRSF000779 SMART:SM00658 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CM001232 KO:K03016
PANTHER:PTHR10917 RefSeq:XP_003715266.1 ProteinModelPortal:G4MSN8
EnsemblFungi:MGG_07080T0 GeneID:2682965 KEGG:mgr:MGG_07080
Uniprot:G4MSN8
Length = 155
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 59/151 (39%), Positives = 94/151 (62%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQ-NCD-MYMLLDVNSELYPMRVGDKFTM 59
S+ LFE +F V +++ +K+D+V+RI A S + D M M LD+N+EL+PM G+ F +
Sbjct: 6 SDAQLFEGVFKVTEVNQ--QKYDRVARIWARSDASTDLMDMTLDINTELFPMSEGEVFRV 63
Query: 60 ALAHTLNLDGTPD---TGYYTP---GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIY 113
LA +L+LDG+ D G+ G TLAD ++Y+ HGK++K D G ++KA Y
Sbjct: 64 VLATSLSLDGSKDDDKAGWRDATKLGGPATLADSFDYVCHGKIYKFEDSEDGDNIKA--Y 121
Query: 114 VSYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
+S+GGLLM L G ++ +D ++LL++
Sbjct: 122 ISFGGLLMCLNGPYKKLTPLRVDY-IYLLIK 151
>SGD|S000005750 [details] [associations]
symbol:RPB8 "RNA polymerase subunit ABC14.5" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IDA]
[GO:0001055 "RNA polymerase II activity" evidence=IDA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0001056 "RNA polymerase III
activity" evidence=IC] [GO:0001054 "RNA polymerase I activity"
evidence=IC] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IGI;IPI] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IPI] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IPI] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR005570 Pfam:PF03870
PIRSF:PIRSF000779 SMART:SM00658 SGD:S000005750 EMBL:BK006948
GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:X92441
SUPFAM:SSF50249 GO:GO:0006360 GO:GO:0005736 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 GO:GO:0005665 PDB:1I3Q PDB:1I50
PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S
PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH
PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K
PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8
PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92
PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ
PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V
PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M
PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3
PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17
PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B
PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J
PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q
PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9
PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO
PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH
PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77
PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J
PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ
PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z
PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ
PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL
PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V
PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A
PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1
PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16
PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R
PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
PDBsum:4BBS Reactome:REACT_87991 GO:GO:0042797 eggNOG:NOG279425
GeneTree:ENSGT00390000018195 HOGENOM:HOG000175572 KO:K03016
OMA:SFKMELI PANTHER:PTHR10917 OrthoDB:EOG4QJVXT EMBL:X53289
EMBL:Z75132 EMBL:AY693087 PIR:C34588 RefSeq:NP_014867.1 PDB:1A1D
PDBsum:1A1D ProteinModelPortal:P20436 SMR:P20436 DIP:DIP-2195N
IntAct:P20436 MINT:MINT-507506 STRING:P20436 PaxDb:P20436
PeptideAtlas:P20436 EnsemblFungi:YOR224C GeneID:854399
KEGG:sce:YOR224C CYGD:YOR224c EvolutionaryTrace:P20436
NextBio:976571 Genevestigator:P20436 GermOnline:YOR224C
Uniprot:P20436
Length = 146
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 61/153 (39%), Positives = 94/153 (61%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++DP +++KV RIEA S D L LD+N EL+P+ D T+
Sbjct: 1 MSN-TLFDDIFQVSEVDPG--RYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTV 57
Query: 60 ALAHTLNLDGTP--DTG----YYTPGAR-KTLADKYEYIMHGKLFKIGDEGSGKSLKAEI 112
+A +LNL+ TP D+ + P A ++LAD Y+Y+M+G +K E K L A +
Sbjct: 58 TIASSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKF--EEVSKDLIA-V 114
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y S+GGLLM L+G+ +++ + + +LL+R+
Sbjct: 115 YYSFGGLLMRLEGNYRNLNNLK-QENAYLLIRR 146
>CGD|CAL0001261 [details] [associations]
symbol:RPB8 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
CGD:CAL0001261 GO:GO:0042493 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACQ01000214
EMBL:AACQ01000213 eggNOG:NOG279425 HOGENOM:HOG000175572 KO:K03016
PANTHER:PTHR10917 RefSeq:XP_711099.1 RefSeq:XP_711116.1
ProteinModelPortal:Q59MZ8 SMR:Q59MZ8 STRING:Q59MZ8 GeneID:3647289
GeneID:3647301 KEGG:cal:CaO19.13691 KEGG:cal:CaO19.6314
Uniprot:Q59MZ8
Length = 148
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 54/149 (36%), Positives = 91/149 (61%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTM 59
MS I LFED+F+V+ DP +++KV RI HS D+ + LD+N EL+P++ D T+
Sbjct: 1 MSGI-LFEDMFIVDSTDPG--RYNKVCRITGHSSTSKDITITLDINKELFPVQNHDSLTI 57
Query: 60 ALAHTLNLDGTPDT--GYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
LA +L + + T G + P ++LAD Y+Y+M+G ++K +E + K +Y+S
Sbjct: 58 TLASSLGNESSMITSNGSWRPPKPDERSLADDYDYVMYGTVYKF-EENADND-KMAVYIS 115
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
+GGLLM L+G +S+ + + ++L+R
Sbjct: 116 FGGLLMRLEGGYRSLSNLK-QENAYILIR 143
>UNIPROTKB|Q59MZ8 [details] [associations]
symbol:RPB8 "Putative uncharacterized protein RPB8"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR005570 Pfam:PF03870
PIRSF:PIRSF000779 SMART:SM00658 CGD:CAL0001261 GO:GO:0042493
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AACQ01000214 EMBL:AACQ01000213 eggNOG:NOG279425
HOGENOM:HOG000175572 KO:K03016 PANTHER:PTHR10917 RefSeq:XP_711099.1
RefSeq:XP_711116.1 ProteinModelPortal:Q59MZ8 SMR:Q59MZ8
STRING:Q59MZ8 GeneID:3647289 GeneID:3647301 KEGG:cal:CaO19.13691
KEGG:cal:CaO19.6314 Uniprot:Q59MZ8
Length = 148
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 54/149 (36%), Positives = 91/149 (61%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTM 59
MS I LFED+F+V+ DP +++KV RI HS D+ + LD+N EL+P++ D T+
Sbjct: 1 MSGI-LFEDMFIVDSTDPG--RYNKVCRITGHSSTSKDITITLDINKELFPVQNHDSLTI 57
Query: 60 ALAHTLNLDGTPDT--GYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
LA +L + + T G + P ++LAD Y+Y+M+G ++K +E + K +Y+S
Sbjct: 58 TLASSLGNESSMITSNGSWRPPKPDERSLADDYDYVMYGTVYKF-EENADND-KMAVYIS 115
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
+GGLLM L+G +S+ + + ++L+R
Sbjct: 116 FGGLLMRLEGGYRSLSNLK-QENAYILIR 143
>UNIPROTKB|C9J413 [details] [associations]
symbol:POLR2H "DNA-directed RNA polymerases I, II, and III
subunit RPABC3" species:9606 "Homo sapiens" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
GO:GO:0005634 GO:GO:0005737 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC078797
HOGENOM:HOG000175572 PANTHER:PTHR10917 HGNC:HGNC:9195
OrthoDB:EOG4CNQSB ChiTaRS:POLR2H IPI:IPI00927637
ProteinModelPortal:C9J413 SMR:C9J413 STRING:C9J413
Ensembl:ENST00000430783 ArrayExpress:C9J413 Bgee:C9J413
Uniprot:C9J413
Length = 122
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 47/113 (41%), Positives = 71/113 (62%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGS--GKSLKAEIYV 114
L DGT D G Y P + + Y G L ++ GD + G + + +Y+
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSSSAY-VSYGGLLMRLQGDANNLHGFEVDSRVYL 115
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 84 LADKYEYIMHGKLFKIG--DEGSGKSL----KAEIYVSYGGLLMMLKGDPSYVSHFELDQ 137
L DK+ ++ L++ G D+G + YVSYGGLLM L+GD + + FE+D
Sbjct: 52 LGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSSSAYVSYGGLLMRLQGDANNLHGFEVDS 111
Query: 138 RLFLLMRKL 146
R++LLM+KL
Sbjct: 112 RVYLLMKKL 120
>RGD|1561203 [details] [associations]
symbol:Polr2h "polymerase (RNA) II (DNA directed) polypeptide H"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0004672 "protein kinase activity" evidence=ISO]
InterPro:IPR005570 Pfam:PF03870 RGD:1561203 GO:GO:0005737
GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0005665 eggNOG:NOG279425 HOGENOM:HOG000175572
PANTHER:PTHR10917 OrthoDB:EOG4CNQSB HSSP:P20436 UniGene:Rn.226389
UniGene:Rn.9160 EMBL:AF105004 IPI:IPI00561004
ProteinModelPortal:Q9Z0W2 STRING:Q9Z0W2 RGD:1306329
InParanoid:Q9Z0W2 Genevestigator:Q9Z0W2 Uniprot:Q9Z0W2
Length = 83
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP 78
L DGT D G Y P
Sbjct: 64 LYEDGTLDDGEYNP 77
>GENEDB_PFALCIPARUM|PFL0665c [details] [associations]
symbol:PFL0665c "RNA polymerase subunit 8c,
putative" species:5833 "Plasmodium falciparum" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR005570 Pfam:PF03870
PIRSF:PIRSF000779 GO:GO:0006352 EMBL:AE014188 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
HOGENOM:HOG000175572 KO:K03016 PANTHER:PTHR10917
RefSeq:XP_001350542.1 ProteinModelPortal:Q8I5R8
EnsemblProtists:PFL0665c:mRNA GeneID:811186 KEGG:pfa:PFL0665c
EuPathDB:PlasmoDB:PF3D7_1213700 OMA:NIDIERT ProtClustDB:PTZ00167
Uniprot:Q8I5R8
Length = 145
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 50/146 (34%), Positives = 83/146 (56%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ + +A
Sbjct: 1 MASNILFEDRFVISSVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKVEEKKAIYLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
L L L+ + G+ + EYIM G++FK +E S + + +Y S+GGL+
Sbjct: 59 LQDKL-LNRNDEKGWEQN--ENVPLNNIEYIMSGRIFKF-EELSSE--RRTVYASFGGLM 112
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L D ++ E+D +++LL + +
Sbjct: 113 MALTTDKQFIGDLEIDMKIYLLTKNI 138
>UNIPROTKB|Q8I5R8 [details] [associations]
symbol:PFL0665c "RNA polymerase subunit 8c, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] InterPro:IPR005570
Pfam:PF03870 PIRSF:PIRSF000779 GO:GO:0006352 EMBL:AE014188
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
HOGENOM:HOG000175572 KO:K03016 PANTHER:PTHR10917
RefSeq:XP_001350542.1 ProteinModelPortal:Q8I5R8
EnsemblProtists:PFL0665c:mRNA GeneID:811186 KEGG:pfa:PFL0665c
EuPathDB:PlasmoDB:PF3D7_1213700 OMA:NIDIERT ProtClustDB:PTZ00167
Uniprot:Q8I5R8
Length = 145
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 50/146 (34%), Positives = 83/146 (56%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ + +A
Sbjct: 1 MASNILFEDRFVISSVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKVEEKKAIYLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
L L L+ + G+ + EYIM G++FK +E S + + +Y S+GGL+
Sbjct: 59 LQDKL-LNRNDEKGWEQN--ENVPLNNIEYIMSGRIFKF-EELSSE--RRTVYASFGGLM 112
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L D ++ E+D +++LL + +
Sbjct: 113 MALTTDKQFIGDLEIDMKIYLLTKNI 138
>POMBASE|SPBC14C8.12 [details] [associations]
symbol:rpb8 "DNA-directed RNA polymerase I, II and III
subunit Rpb8" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IDA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISO]
InterPro:IPR005570 Pfam:PF03870 PIRSF:PIRSF000779 SMART:SM00658
PomBase:SPBC14C8.12 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0006366 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0006360
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 GO:GO:0005665 PDB:3H0G
PDBsum:3H0G eggNOG:NOG279425 HOGENOM:HOG000175572 KO:K03016
OMA:SFKMELI PANTHER:PTHR10917 EMBL:D89595 EMBL:D86555 EMBL:AF020780
EMBL:AF029688 EMBL:Y07643 EMBL:Y07644 PIR:T43540 PIR:T45232
RefSeq:NP_595915.1 ProteinModelPortal:Q92399 IntAct:Q92399
MINT:MINT-1214018 STRING:Q92399 EnsemblFungi:SPBC14C8.12.1
GeneID:2539794 KEGG:spo:SPBC14C8.12 OrthoDB:EOG4QJVXT
EvolutionaryTrace:Q92399 NextBio:20800943 Uniprot:Q92399
Length = 125
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS VL ++IF V +D +K+ +VSRI A S DM + LD+NS++YP+ F++
Sbjct: 1 MSESVLLDEIFTVTSVDK--QKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQ 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI 99
+ LN +PD K AD YIM+GK++++
Sbjct: 59 ITSNLN---SPDL--------KEAAD---YIMYGKVYRV 83
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 84 LADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLM 143
L + +YIM+GK++++ + K K +YVS+GGLLM ++G + LD ++LL+
Sbjct: 68 LKEAADYIMYGKVYRVEE---AKDEKVSVYVSFGGLLMAIEGSHRKLYRLSLDH-VYLLL 123
Query: 144 RK 145
R+
Sbjct: 124 RR 125
>UNIPROTKB|C9JUA8 [details] [associations]
symbol:POLR2H "DNA-directed RNA polymerases I, II, and III
subunit RPABC3" species:9606 "Homo sapiens" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR005570
Pfam:PF03870 GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AC078797 HOGENOM:HOG000175572
PANTHER:PTHR10917 HGNC:HGNC:9195 ChiTaRS:POLR2H IPI:IPI00791019
ProteinModelPortal:C9JUA8 SMR:C9JUA8 STRING:C9JUA8
Ensembl:ENST00000443489 ArrayExpress:C9JUA8 Bgee:C9JUA8
Uniprot:C9JUA8
Length = 86
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 84 LADKYEYIMHGKLFKIG--DEGSGKSL----KAEIYVSYGGLLMMLKGDPSYVSHFELDQ 137
L DK+ ++ L++ G D+G + YVSYGGLLM L+GD + + FE+D
Sbjct: 16 LGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSSSAYVSYGGLLMRLQGDANNLHGFEVDS 75
Query: 138 RLFLLMRKL 146
R++LLM+KL
Sbjct: 76 RVYLLMKKL 84
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLF 97
M ++LDVN ++YP+ +GDKF + +A TL DGT D G Y P + + Y G L
Sbjct: 1 MDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSSSAY-VSYGGLLM 59
Query: 98 KI-GDEGS--GKSLKAEIYV 114
++ GD + G + + +Y+
Sbjct: 60 RLQGDANNLHGFEVDSRVYL 79
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.140 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 146 146 0.00079 103 3 11 22 0.45 31
30 0.49 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 547 (58 KB)
Total size of DFA: 129 KB (2083 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.33u 0.12s 14.45t Elapsed: 00:00:00
Total cpu time: 14.33u 0.12s 14.45t Elapsed: 00:00:00
Start: Fri May 10 17:16:58 2013 End: Fri May 10 17:16:58 2013