BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032138
(146 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578910|ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Ricinus communis]
gi|223530164|gb|EEF32075.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Ricinus communis]
Length = 146
Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 127/146 (86%), Positives = 141/146 (96%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MSNIVLFEDIFVV+K+DPDGKKFDKVSRIEAHSQNCDM+M LDVN+E+YPM VGDKFTMA
Sbjct: 1 MSNIVLFEDIFVVDKLDPDGKKFDKVSRIEAHSQNCDMFMHLDVNTEIYPMAVGDKFTMA 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
LAHTLNLDGTPDTGYYT GARKTLADKYEYIM+GKL+KI +EGSGK++KAE+ VSYGGLL
Sbjct: 61 LAHTLNLDGTPDTGYYTQGARKTLADKYEYIMNGKLYKISEEGSGKAVKAEMLVSYGGLL 120
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M+L+GDPS+VSHFELDQRLFLLMRKL
Sbjct: 121 MLLRGDPSHVSHFELDQRLFLLMRKL 146
>gi|224135363|ref|XP_002327199.1| predicted protein [Populus trichocarpa]
gi|222835569|gb|EEE74004.1| predicted protein [Populus trichocarpa]
Length = 148
Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 111/145 (76%), Positives = 133/145 (91%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNI++FEDIFVV+K+DPDGKKFDKV+RIEAHSQNCDM+M LDVN+++YPM V DKFTMAL
Sbjct: 4 SNIIMFEDIFVVDKLDPDGKKFDKVTRIEAHSQNCDMFMHLDVNTDVYPMFVNDKFTMAL 63
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLM 121
AHTLNLDGTPDTGYYT G RKTLADKYEY+MHGKL++I +EGS ++ + E+ +++GGLLM
Sbjct: 64 AHTLNLDGTPDTGYYTQGGRKTLADKYEYVMHGKLYQIQEEGSRRATRTEMVITFGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
+LKGDPSYVS FELDQRLF L+RKL
Sbjct: 124 LLKGDPSYVSQFELDQRLFCLIRKL 148
>gi|297847838|ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata]
gi|297337642|gb|EFH68059.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata]
Length = 146
Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 112/145 (77%), Positives = 134/145 (92%), Gaps = 1/145 (0%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNI+LFEDIFVV+K+DPDGKKFDKV+R++A S N +M+M LDVN+E+YP+ VGDKFT+AL
Sbjct: 3 SNIILFEDIFVVDKLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLAL 62
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLM 121
A TLNLDGTPDTGY+TPGA+KTLADKYEYIMHGKL+KI E GK+ KAE+YVS+GGLLM
Sbjct: 63 APTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKAELYVSFGGLLM 121
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
+LKGDP+++SHFELDQRLFLLMRKL
Sbjct: 122 LLKGDPAHISHFELDQRLFLLMRKL 146
>gi|15221759|ref|NP_175827.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
gi|4585968|gb|AAD25604.1|AC005287_6 RNA polymerase I, II and III 16.5 kDa subunit [Arabidopsis
thaliana]
gi|3372230|gb|AAC28252.1| RNA polymerase I, II and III 16.5 kDa subunit [Arabidopsis
thaliana]
gi|21555812|gb|AAM63939.1| RNA polymerase II subunit, putative [Arabidopsis thaliana]
gi|28466897|gb|AAO44057.1| At1g54250 [Arabidopsis thaliana]
gi|110735704|dbj|BAE99832.1| RNA polymerase I, II and III 16.5 kDa subunit [Arabidopsis
thaliana]
gi|332194950|gb|AEE33071.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
Length = 146
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/145 (76%), Positives = 134/145 (92%), Gaps = 1/145 (0%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNI+LFEDIFVV+++DPDGKKFDKV+R++A S N +M+M LDVN+E+YP+ VGDKFT+AL
Sbjct: 3 SNIILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLAL 62
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLM 121
A TLNLDGTPDTGY+TPGA+KTLADKYEYIMHGKL+KI E GK+ KAE+YVS+GGLLM
Sbjct: 63 APTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKAELYVSFGGLLM 121
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
+LKGDP+++SHFELDQRLFLLMRKL
Sbjct: 122 LLKGDPAHISHFELDQRLFLLMRKL 146
>gi|15231714|ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
gi|297817262|ref|XP_002876514.1| hypothetical protein ARALYDRAFT_907465 [Arabidopsis lyrata subsp.
lyrata]
gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis thaliana]
gi|21554131|gb|AAM63211.1| RNA polymerase II subunit, putative [Arabidopsis thaliana]
gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis thaliana]
gi|30793811|gb|AAP40358.1| unknown protein [Arabidopsis thaliana]
gi|297322352|gb|EFH52773.1| hypothetical protein ARALYDRAFT_907465 [Arabidopsis lyrata subsp.
lyrata]
gi|332646423|gb|AEE79944.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
Length = 146
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/145 (75%), Positives = 134/145 (92%), Gaps = 1/145 (0%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNI++FEDIFVV+K+DPDGKKFDKV+R+EA S N +M+M LDVN+E+YP+ VGDKFT+A+
Sbjct: 3 SNIIMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAM 62
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLM 121
A TLNLDGTPDTGY+TPGA+KTLADKYEYIMHGKL+KI E GK+ KAE+YVS+GGLLM
Sbjct: 63 APTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKAELYVSFGGLLM 121
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
+L+GDP+++SHFELDQRLFLLMRKL
Sbjct: 122 LLQGDPAHISHFELDQRLFLLMRKL 146
>gi|192910796|gb|ACF06506.1| RNA polymerase [Elaeis guineensis]
Length = 145
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 123/142 (86%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF + +IDPDGKKFDKVSRIEA S+ DMYM LDVN+E+YP+ VGDKFTM LA T
Sbjct: 4 LLFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGDKFTMVLAPT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
L+LDGTPD+GYY G RK+LADK+EY+MHGKL+KI +E SG ++K EIY S+GGLLMMLK
Sbjct: 64 LSLDGTPDSGYYMQGQRKSLADKFEYVMHGKLYKISEESSGPNVKVEIYASFGGLLMMLK 123
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDPS ++FELDQRLFLLMRK+
Sbjct: 124 GDPSNATNFELDQRLFLLMRKV 145
>gi|53793231|dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
sativa Japonica Group]
Length = 396
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 119/142 (83%), Gaps = 1/142 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V ++DPDGKKFD+VSRIEA S+ DMYM LDV +E+YPMR GD+FTM LA TL
Sbjct: 255 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 314
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIG-DEGSGKSLKAEIYVSYGGLLMMLK 124
NLDGTPDTG+YT RKTLADK++Y+MHGKL+KI D SG++ K EIY S+GGLLMMLK
Sbjct: 315 NLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLK 374
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDPS + FELDQRLFLL+RK+
Sbjct: 375 GDPSSAASFELDQRLFLLIRKV 396
>gi|125556620|gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
gi|125598367|gb|EAZ38147.1| hypothetical protein OsJ_22498 [Oryza sativa Japonica Group]
Length = 191
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 119/142 (83%), Gaps = 1/142 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V ++DPDGKKFD+VSRIEA S+ DMYM LDV +E+YPMR GD+FTM LA TL
Sbjct: 50 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 109
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIG-DEGSGKSLKAEIYVSYGGLLMMLK 124
NLDGTPDTG+YT RKTLADK++Y+MHGKL+KI D SG++ K EIY S+GGLLMMLK
Sbjct: 110 NLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLK 169
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDPS + FELDQRLFLL+RK+
Sbjct: 170 GDPSSAASFELDQRLFLLIRKV 191
>gi|116792470|gb|ABK26380.1| unknown [Picea sitchensis]
Length = 145
Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/142 (69%), Positives = 120/142 (84%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V +IDPDGKKFDKVSRIEA S+ DMYMLLDVN ++YP+ VG+KF +ALA T
Sbjct: 4 LLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVALAPT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
LNLDGTPD GY+ G RK+LADKYEY+M+GKL+ + +EGSG ++K EI S+GGLLM+LK
Sbjct: 64 LNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLMLLK 123
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDPS +FELDQRLFLLMRK+
Sbjct: 124 GDPSNAGNFELDQRLFLLMRKV 145
>gi|225434042|ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3 isoform 1 [Vitis vinifera]
gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3 isoform 2 [Vitis vinifera]
gi|296084252|emb|CBI24640.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/142 (68%), Positives = 118/142 (83%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LF DIF V +IDPDGKKFDKVSRIEA S+ DMYM LDVN+E+YPM G+KF M+LA T
Sbjct: 4 TLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSLAST 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
L+LDGTPDTGYYT RK+LADK+EY+MHGKL+KI +EGSG ++K IYVS+GGLLMML
Sbjct: 64 LDLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLMMLS 123
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDP+ + +LDQR+FLL+RK+
Sbjct: 124 GDPANTAKLDLDQRVFLLIRKV 145
>gi|242037423|ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
gi|241919960|gb|EER93104.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
Length = 145
Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/141 (66%), Positives = 115/141 (81%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED F+V ++DPDGKKFDKVSR+EA S+ MYM LDV +++YP+R G+KF M LA TL
Sbjct: 5 LFEDTFIVSRLDPDGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVLAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
NLDGTPDTGYYT RKTLAD YEY+M GKL+KI ++ S ++ K EIY S+GGLLM+L+G
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSQNAKVEIYASFGGLLMLLRG 124
Query: 126 DPSYVSHFELDQRLFLLMRKL 146
DPS + FELDQRLFLLMRK+
Sbjct: 125 DPSTAASFELDQRLFLLMRKV 145
>gi|357165735|ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 146
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/142 (69%), Positives = 117/142 (82%), Gaps = 1/142 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIFVV +IDPDGKKFD+V+RIEA S+ MYM LDV + +YPM GDKFTM LA TL
Sbjct: 5 LFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVLAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS-GKSLKAEIYVSYGGLLMMLK 124
NLDGTPDTGYYT RKTLADKY+Y+MHGKL+KI ++ S G++ K E Y S+GGLLM+LK
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLLMLLK 124
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDPS ++ ELDQRLFLLMRK+
Sbjct: 125 GDPSSAANLELDQRLFLLMRKV 146
>gi|357123574|ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 144
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/142 (70%), Positives = 119/142 (83%), Gaps = 3/142 (2%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIFVV +IDPDGKKFD+V+RIEA S+ MYM LDV +++YPM GDKFTM LA TL
Sbjct: 5 LFEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVLAPTL 62
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS-GKSLKAEIYVSYGGLLMMLK 124
NLDGTPDTGYYT RKTLADKY+Y+MHGKL+KI ++ S G++ K EIY S+GGLLM+LK
Sbjct: 63 NLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFGGLLMLLK 122
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDPS ++ ELDQRLFLLMRK+
Sbjct: 123 GDPSSAANLELDQRLFLLMRKV 144
>gi|242032261|ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
gi|241917379|gb|EER90523.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
Length = 145
Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/141 (66%), Positives = 115/141 (81%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED FVV ++DPDGKKFD+VSR+EA S+ MYM LDV +++YPM+ +KF M LA TL
Sbjct: 5 LFEDTFVVNRLDPDGKKFDRVSRVEARSEQLAMYMQLDVATDVYPMQPNEKFNMVLAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
NLDGTPDTGYYT RKTLAD YEY+MHGKL+KI ++ S ++ K EIY S+GGLLM+L+G
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMHGKLYKISEDTSSQNAKVEIYASFGGLLMLLRG 124
Query: 126 DPSYVSHFELDQRLFLLMRKL 146
DPS + FELDQRLFLLMRK+
Sbjct: 125 DPSTAASFELDQRLFLLMRKV 145
>gi|449468856|ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Cucumis sativus]
gi|449484745|ref|XP_004156968.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Cucumis sativus]
Length = 144
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/142 (68%), Positives = 121/142 (85%), Gaps = 1/142 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+DIF +E+++PDGKKFDKV+RIEA S+ DM+M LD+NSE+YP++ G+KF+MALA T
Sbjct: 4 LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMALAPT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
LNLDGTPDTGY+ G RK+LAD+YEY+M GKLF+I E SG KAEI S+GGLLMMLK
Sbjct: 64 LNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRIS-ESSGHGGKAEIDASFGGLLMMLK 122
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDPS+ S FELDQRLFLL+RK+
Sbjct: 123 GDPSHCSKFELDQRLFLLIRKV 144
>gi|226505828|ref|NP_001147399.1| LOC100281008 [Zea mays]
gi|194699730|gb|ACF83949.1| unknown [Zea mays]
gi|195607894|gb|ACG25777.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
gi|195608506|gb|ACG26083.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
gi|195611040|gb|ACG27350.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
gi|195649823|gb|ACG44379.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
gi|195653495|gb|ACG46215.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
gi|238014148|gb|ACR38109.1| unknown [Zea mays]
gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 1
[Zea mays]
gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 2
[Zea mays]
gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 3
[Zea mays]
gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 4
[Zea mays]
Length = 146
Score = 201 bits (510), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 114/142 (80%), Gaps = 1/142 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED FVV ++DPDGKKFD+VSR+EA S+ DMYM LDV +++YPM G+KF M +A TL
Sbjct: 5 LFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVIAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIG-DEGSGKSLKAEIYVSYGGLLMMLK 124
NLDGTPDTGYYT RKTLAD YEY+M GKL+KI D S ++ K E+Y S+GGLLM+L+
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLLMLLR 124
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDPS + FELDQRLFLL+RK+
Sbjct: 125 GDPSTAASFELDQRLFLLIRKV 146
>gi|195611242|gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
Length = 146
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 114/142 (80%), Gaps = 1/142 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED FVV ++DPDGKKFD+VSR+EA S+ DMYM LDV +++YPM G+KF M +A TL
Sbjct: 5 LFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVIAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIG-DEGSGKSLKAEIYVSYGGLLMMLK 124
NLDGTPDTGYYT RKTLAD YEY+M GKL+KI D S ++ K E+Y S+GGLLM+L+
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLLMLLR 124
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDPS + FELDQRLFLL+RK+
Sbjct: 125 GDPSTAASFELDQRLFLLIRKV 146
>gi|13094965|gb|AAK12101.1|AF323605_1 RNA polymerase I, II and III subunit RPB8, partial [Manihot
esculenta]
Length = 110
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/110 (87%), Positives = 105/110 (95%)
Query: 37 DMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKL 96
DM+M LDVN+E+YPM VGDKFTMALAHTLNLDGTPDTGYY GARKTLADKYEYIMHGKL
Sbjct: 1 DMFMHLDVNTEIYPMAVGDKFTMALAHTLNLDGTPDTGYYIQGARKTLADKYEYIMHGKL 60
Query: 97 FKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
+KI +EGSGK++KAEIYVSYGGLLMMLKGDPS+VSHFELDQRLFLL+RKL
Sbjct: 61 YKISEEGSGKAVKAEIYVSYGGLLMMLKGDPSHVSHFELDQRLFLLIRKL 110
>gi|218194094|gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
Length = 215
Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/144 (65%), Positives = 113/144 (78%), Gaps = 3/144 (2%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V ++DPDGKKFD+VSRIEA S DMYM LDV +++YPM GD+FTM L TL
Sbjct: 72 LFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTL 131
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIG---DEGSGKSLKAEIYVSYGGLLMM 122
NLDGTPD+ ++T RKTLADKYEY+MHGKL+KI D + K E+Y S+GGLL+M
Sbjct: 132 NLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVM 191
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
LKGDPS ++FELDQRLFLLMRK+
Sbjct: 192 LKGDPSSAANFELDQRLFLLMRKV 215
>gi|115456559|ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
gi|29244685|gb|AAO73277.1| putative RNA polymerase [Oryza sativa Japonica Group]
gi|41469638|gb|AAS07361.1| putative RNA polymerase [Oryza sativa Japonica Group]
gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family protein, expressed [Oryza sativa
Japonica Group]
gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family protein, expressed [Oryza sativa
Japonica Group]
gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa Japonica Group]
gi|125588624|gb|EAZ29288.1| hypothetical protein OsJ_13351 [Oryza sativa Japonica Group]
gi|215692970|dbj|BAG88390.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 148
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/144 (65%), Positives = 113/144 (78%), Gaps = 3/144 (2%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V ++DPDGKKFD+VSRIEA S DMYM LDV +++YPM GD+FTM L TL
Sbjct: 5 LFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIG---DEGSGKSLKAEIYVSYGGLLMM 122
NLDGTPD+ ++T RKTLADKYEY+MHGKL+KI D + K E+Y S+GGLL+M
Sbjct: 65 NLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVM 124
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
LKGDPS ++FELDQRLFLLMRK+
Sbjct: 125 LKGDPSSAANFELDQRLFLLMRKV 148
>gi|147787866|emb|CAN73856.1| hypothetical protein VITISV_036454 [Vitis vinifera]
Length = 305
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/164 (59%), Positives = 116/164 (70%), Gaps = 22/164 (13%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LF DIF V +IDPDGKKFDKVSRIEA S+ DMYM LDVN+E+YPM G+KF M+LA T
Sbjct: 4 TLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSLAST 63
Query: 65 LNLDGTPDTGYYTP----------------------GARKTLADKYEYIMHGKLFKIGDE 102
L+LDGTPDTGYYT RK+LADK+EY+MHGKL+KI +E
Sbjct: 64 LDLDGTPDTGYYTQVKCCGMVVXLARTKRITAAVRVAGRKSLADKFEYVMHGKLYKISEE 123
Query: 103 GSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
GSG ++K IYVS+GGLLMML GDP+ + +LDQR FLL+RK
Sbjct: 124 GSGPNVKGVIYVSFGGLLMMLSGDPANTAKLDLDQRXFLLIRKF 167
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 82/112 (73%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
F+DIFVV+ DP GKKFDKVSRIEA S+ DM+M LDVN E YP++ G+KF M LA T
Sbjct: 192 TFFDDIFVVDGQDPGGKKFDKVSRIEASSEQYDMFMQLDVNIEAYPIQAGEKFRMVLAPT 251
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
L+LDG T Y+T G K+LADK++Y+M+G ++K+ +EGSG +K I + +
Sbjct: 252 LHLDGADVTDYFTQGEXKSLADKFDYVMYGIIYKVSNEGSGPDVKGYISILF 303
>gi|388509630|gb|AFK42881.1| unknown [Medicago truncatula]
Length = 145
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 118/142 (83%), Gaps = 2/142 (1%)
Query: 6 LFEDIFVVEKIDPDGKK-FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
L EDIF VEK++PD KK F+KV+RIEA S+ DM+M LD+NSELYP+++G KF++AL T
Sbjct: 5 LLEDIFRVEKVNPDDKKLFEKVTRIEARSEKFDMFMQLDINSELYPLKMGQKFSLALVPT 64
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
LN DGTPDTGYY PG R+++AD YEY+M+GKL+++ EGSG KAE+ +S+GGLLM+LK
Sbjct: 65 LNPDGTPDTGYYNPGNRQSIADNYEYVMYGKLYRV-TEGSGGREKAELNISFGGLLMLLK 123
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GD S+ + FELDQRL+LLMRK+
Sbjct: 124 GDHSHFNKFELDQRLYLLMRKV 145
>gi|388522489|gb|AFK49306.1| unknown [Lotus japonicus]
Length = 144
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 119/143 (83%), Gaps = 3/143 (2%)
Query: 5 VLFEDIFVVEKIDPDGKK-FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
+LF+DIF VEK++PD KK F+KV+RIEA S+ DM+M LD+NSELYP++VG KF + L
Sbjct: 4 ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVP 63
Query: 64 TLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMML 123
TLN DGTPDTGYY PG R++LAD +EY+M+GKL+KI EGSG+ KAE+ +S+GGLLMM+
Sbjct: 64 TLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKIS-EGSGRE-KAELNISFGGLLMMM 121
Query: 124 KGDPSYVSHFELDQRLFLLMRKL 146
KGD S+ + FELDQRL+LLMRK+
Sbjct: 122 KGDHSHCNKFELDQRLYLLMRKV 144
>gi|351723785|ref|NP_001237035.1| uncharacterized protein LOC100499860 [Glycine max]
gi|255627197|gb|ACU13943.1| unknown [Glycine max]
Length = 145
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 118/142 (83%), Gaps = 3/142 (2%)
Query: 6 LFEDIFVVEKIDPDGKK-FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LFEDIF VEK++PD KK FDKV+RIEA S+ DM+M LD+NSE+YP++VG KF + L T
Sbjct: 6 LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
LN DGTPDTGYYT +R++LA+ +EY+M+GKL++I EGSG+ KAE+ +S+GGLLMMLK
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRIT-EGSGRE-KAEMNISFGGLLMMLK 123
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GD S+ + FELDQRL+LL+RK+
Sbjct: 124 GDTSHCNKFELDQRLYLLIRKV 145
>gi|358248504|ref|NP_001239637.1| uncharacterized protein LOC100816388 [Glycine max]
gi|255631646|gb|ACU16190.1| unknown [Glycine max]
gi|255640052|gb|ACU20317.1| unknown [Glycine max]
Length = 145
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 118/142 (83%), Gaps = 3/142 (2%)
Query: 6 LFEDIFVVEKIDPDGKK-FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LFEDIF VEK++PD KK FDKV+RIEA S+ DM+M LD+NSE+YP++VG KF + L +
Sbjct: 6 LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEVYPLKVGQKFALVLVSS 65
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
LN DGTPDTGYYT +R++LA+ +EY+M+GKL++I EGSG+ KAE+ +S+GGLLMMLK
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRIT-EGSGRE-KAEMNISFGGLLMMLK 123
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GD S+ + FELDQRL+LL+RK+
Sbjct: 124 GDTSHCNKFELDQRLYLLIRKV 145
>gi|242096894|ref|XP_002438937.1| hypothetical protein SORBIDRAFT_10g028590 [Sorghum bicolor]
gi|241917160|gb|EER90304.1| hypothetical protein SORBIDRAFT_10g028590 [Sorghum bicolor]
Length = 149
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/145 (62%), Positives = 110/145 (75%), Gaps = 6/145 (4%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+D F V ++DPDGKKFDKV+RIEA S+N +MYM LDV +E+Y M++GD F M LA TL
Sbjct: 5 LFKDKFKVTRLDPDGKKFDKVTRIEATSEN-EMYMQLDVATEVYAMKLGDTFNMVLALTL 63
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIG-----DEGSGKSLKAEIYVSYGGLL 120
NLDG+ D GYYT RKTLAD Y+YIMHGKL+KI D S K EIY S+GGLL
Sbjct: 64 NLDGSTDAGYYTQAGRKTLADDYDYIMHGKLYKISEDSTKDSNGNSSTKVEIYASFGGLL 123
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRK 145
M+L+GDPS + F+LDQRLFLL++K
Sbjct: 124 MILRGDPSCAAGFQLDQRLFLLIKK 148
>gi|14193247|gb|AAK55847.1|AF266463_1 RNA polymerase subunit [Manihot esculenta]
Length = 96
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/96 (89%), Positives = 92/96 (95%)
Query: 51 MRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
M VGDKFTMALAHTLNLDGTPDTGYY GARKTLADKYEYIMHGKL+KI +EGSGK++KA
Sbjct: 1 MAVGDKFTMALAHTLNLDGTPDTGYYIQGARKTLADKYEYIMHGKLYKISEEGSGKAVKA 60
Query: 111 EIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
EIYVSYGGLLMMLKGDPS+VSHFELDQRLFLL+RKL
Sbjct: 61 EIYVSYGGLLMMLKGDPSHVSHFELDQRLFLLIRKL 96
>gi|449462830|ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3-like [Cucumis sativus]
gi|449509097|ref|XP_004163492.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3-like [Cucumis sativus]
Length = 146
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 109/142 (76%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF DIF V+ ++PDGKK+DKVSRIEA S+ M+MLLDVN+E+YP+ G+K M L+ T
Sbjct: 4 LLFNDIFKVKCVNPDGKKYDKVSRIEARSEKLSMHMLLDVNTEIYPIDEGEKLLMVLSPT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
LN DG+P T Y +K+LADK+EYIMHGK +K+ DEGSG LK E+Y S+GGL M+LK
Sbjct: 64 LNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQMLLK 123
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDP + + F +DQ +FLL+RKL
Sbjct: 124 GDPIHCAKFRVDQNMFLLLRKL 145
>gi|302788262|ref|XP_002975900.1| hypothetical protein SELMODRAFT_104121 [Selaginella moellendorffii]
gi|300156176|gb|EFJ22805.1| hypothetical protein SELMODRAFT_104121 [Selaginella moellendorffii]
Length = 147
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDK-VSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTM 59
M+ ++LFEDIF + ID DGKKFDK VSRIEA S+ DM ++LDVN ++YP+ DKFT+
Sbjct: 1 MAELLLFEDIFTITGIDTDGKKFDKAVSRIEARSEQFDMQLVLDVNIDVYPIARTDKFTL 60
Query: 60 ALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
AL+ TL LDGTPD G + +K+LADKYEY+M+GKL+K D+ SG ++K +YVS+GGL
Sbjct: 61 ALSSTLRLDGTPDDGVFDQSRKKSLADKYEYVMYGKLYKYDDDESGGAIKIGVYVSFGGL 120
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
LMMLKGD ++ + +LDQRL+LLMRK+
Sbjct: 121 LMMLKGDKQHLGNLKLDQRLYLLMRKV 147
>gi|168010644|ref|XP_001758014.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690891|gb|EDQ77256.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 147
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 112/146 (76%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M + +LFEDIF + ++DPDGKKFDKVSRI AHS+ DM +LLDVN ++YP+ G+KFT+A
Sbjct: 1 MGDTLLFEDIFTISQLDPDGKKFDKVSRIVAHSEQFDMDVLLDVNIDIYPLHKGEKFTLA 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
LA TL+LDGT D G + RK+LADKYEY+M+GK++K D S K E YVS+GGLL
Sbjct: 61 LASTLSLDGTMDDGTFDQSNRKSLADKYEYVMYGKVYKYADTESKGPPKVETYVSFGGLL 120
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M LKGDP+ ++ LDQR++LLMRK+
Sbjct: 121 MCLKGDPNNLNSLVLDQRVYLLMRKV 146
>gi|225434044|ref|XP_002274208.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Vitis vinifera]
gi|296084254|emb|CBI24642.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 111/141 (78%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
F+DIFVV+ DP GKKFDKVSRIEA S+ DM+M LDVN E YP++ G+KF M LA TL
Sbjct: 5 FFDDIFVVDGQDPGGKKFDKVSRIEASSEQYDMFMQLDVNIEAYPIQAGEKFRMVLAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
+LDG T Y+T G +K+LADK++Y+M+G ++K+ +EGSG +K IY S+GGLLM+LKG
Sbjct: 65 HLDGADVTDYFTQGEQKSLADKFDYVMYGIIYKVSNEGSGPDVKGVIYASFGGLLMILKG 124
Query: 126 DPSYVSHFELDQRLFLLMRKL 146
DPS ++ E+++RLFLLM+K+
Sbjct: 125 DPSNLNKLEVNKRLFLLMKKV 145
>gi|388510210|gb|AFK43171.1| unknown [Lotus japonicus]
Length = 139
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 110/134 (82%), Gaps = 3/134 (2%)
Query: 5 VLFEDIFVVEKIDPDGKK-FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
+LF+DIF VEK++PD KK F+KV+RIEA S+ DM+M LD+NSELYP++VG KF + L
Sbjct: 4 ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVP 63
Query: 64 TLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMML 123
TLN DGTPDTGYY PG R++LAD +EY+M+GKL+KI EGSG+ KAE+ +S+GGLLMM+
Sbjct: 64 TLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKIS-EGSGRE-KAELNISFGGLLMMM 121
Query: 124 KGDPSYVSHFELDQ 137
KGD S+ + FELDQ
Sbjct: 122 KGDHSHCNKFELDQ 135
>gi|302811134|ref|XP_002987257.1| hypothetical protein SELMODRAFT_125701 [Selaginella moellendorffii]
gi|300145154|gb|EFJ11833.1| hypothetical protein SELMODRAFT_125701 [Selaginella moellendorffii]
Length = 145
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 116/146 (79%), Gaps = 2/146 (1%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+N++L EDIF V IDPDGKKFDK +IEAHS+ DM++LLDVN ++YP+ +KFTMA
Sbjct: 1 MANLLL-EDIFRVTDIDPDGKKFDK-GKIEAHSEQFDMHLLLDVNCDVYPLHRDEKFTMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
LA TL+LDGTPD G +++LAD+Y+Y+M+GKL+K D+ S +LK +IYVS+GGLL
Sbjct: 59 LAPTLSLDGTPDEGVLDQSGKRSLADRYDYVMYGKLYKYSDDHSTGALKVDIYVSFGGLL 118
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M LKGDP +++ ++DQRL++L+RK+
Sbjct: 119 MKLKGDPQHLNELQMDQRLYVLLRKV 144
>gi|302789303|ref|XP_002976420.1| hypothetical protein SELMODRAFT_105067 [Selaginella moellendorffii]
gi|300156050|gb|EFJ22680.1| hypothetical protein SELMODRAFT_105067 [Selaginella moellendorffii]
Length = 145
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 112/142 (78%), Gaps = 1/142 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+L EDIF V IDPDGKKFDK +IEAHS+ DM++LLDVN ++YP+ +KFTMALA T
Sbjct: 4 LLLEDIFRVTDIDPDGKKFDK-GKIEAHSEQFDMHLLLDVNCDVYPLHRDEKFTMALAPT 62
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
L+LDGTPD G +++LAD+Y+Y+M+GKL+K D+ S +LK +IYVS+GGLLM LK
Sbjct: 63 LSLDGTPDEGVLDQSGKRSLADRYDYVMYGKLYKYSDDHSTGALKVDIYVSFGGLLMKLK 122
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDP +++ ++DQRL++L+RK+
Sbjct: 123 GDPQHLNELQMDQRLYVLLRKV 144
>gi|307110961|gb|EFN59196.1| hypothetical protein CHLNCDRAFT_33921 [Chlorella variabilis]
Length = 149
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 106/149 (71%), Gaps = 3/149 (2%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS + EDIF V++ DPDGKKFDKVSRI+A S +M ++LD+N +++P+ VGDK +
Sbjct: 1 MSKSQVLEDIFEVQEKDPDGKKFDKVSRIKARSDLYEMDLVLDINVDVFPVEVGDKLVIC 60
Query: 61 LAHTLNLDGTPDTGYYTP---GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
LA+TLNLDGTP + + ++TL D ++Y+MHGK+FK D S LKA++YVSYG
Sbjct: 61 LANTLNLDGTPSSATFDASFVSGKRTLMDNFDYVMHGKVFKFKDNSSSGQLKADVYVSYG 120
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
GLLM L GDP + ++DQ ++LL+RK+
Sbjct: 121 GLLMQLTGDPKRLEDLDVDQNIYLLVRKV 149
>gi|224135367|ref|XP_002327200.1| predicted protein [Populus trichocarpa]
gi|222835570|gb|EEE74005.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 104/139 (74%), Gaps = 3/139 (2%)
Query: 8 EDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNL 67
EDIF+V + GK FDKV+RIEA S+ +++M LDVN+E+YP++ +++ + L TL+
Sbjct: 2 EDIFIVGSV---GKNFDKVTRIEARSERLELFMQLDVNTEVYPIKQEERYAVKLTTTLDP 58
Query: 68 DGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDP 127
DGTPDT YYTP ++AD + YIMHGKL+KI DEGSG + K E+ +S+GGLLM LKG+P
Sbjct: 59 DGTPDTAYYTPIKPGSIADNFYYIMHGKLYKILDEGSGANHKVEMLISFGGLLMSLKGNP 118
Query: 128 SYVSHFELDQRLFLLMRKL 146
++ F+LDQ+ FL MRKL
Sbjct: 119 DCITDFQLDQKYFLCMRKL 137
>gi|195015856|ref|XP_001984289.1| GH15097 [Drosophila grimshawi]
gi|195128897|ref|XP_002008896.1| GI13746 [Drosophila mojavensis]
gi|195379776|ref|XP_002048652.1| GJ14092 [Drosophila virilis]
gi|193897771|gb|EDV96637.1| GH15097 [Drosophila grimshawi]
gi|193920505|gb|EDW19372.1| GI13746 [Drosophila mojavensis]
gi|194155810|gb|EDW70994.1| GJ14092 [Drosophila virilis]
Length = 149
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 106/144 (73%), Gaps = 2/144 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLMM 122
L DG PD+G Y P + T AD +EY+M+GK+++I GDE +S + YVS+GGLLM
Sbjct: 64 LREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNESSRLSAYVSFGGLLMR 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+DQ ++LLM++L
Sbjct: 124 LQGDANNLHGFEVDQHMYLLMKRL 147
>gi|224124016|ref|XP_002319223.1| predicted protein [Populus trichocarpa]
gi|118487468|gb|ABK95561.1| unknown [Populus trichocarpa]
gi|222857599|gb|EEE95146.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 100/138 (72%)
Query: 9 DIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLD 68
D FV+EK++PDGKK+DKVSRI A S+ D+YM+LDV++E+YP+ ++ + L TLN D
Sbjct: 6 DFFVIEKLNPDGKKYDKVSRIVARSEKGDLYMVLDVHTEIYPIEEKSRYLVLLTETLNTD 65
Query: 69 GTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPS 128
GTP G + + DK+EY+ HGKL+KI EGSG K EIY+S+GGL ++L+G PS
Sbjct: 66 GTPVDPRNAQGKQPSKEDKFEYVTHGKLYKIDKEGSGADFKLEIYISFGGLQLLLRGSPS 125
Query: 129 YVSHFELDQRLFLLMRKL 146
++ F+LD+ F+LMRK+
Sbjct: 126 SLARFQLDKNYFMLMRKM 143
>gi|195427231|ref|XP_002061681.1| GK17059 [Drosophila willistoni]
gi|194157766|gb|EDW72667.1| GK17059 [Drosophila willistoni]
Length = 149
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 106/144 (73%), Gaps = 2/144 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+FEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VIFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLMM 122
L DG PD+G Y P + T AD +EY+M+GK+++I GDE +S + YVS+GGLLM
Sbjct: 64 LREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNESSRLSAYVSFGGLLMR 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+DQ ++LLM++L
Sbjct: 124 LQGDANNLHGFEVDQHIYLLMKRL 147
>gi|21358365|ref|NP_649352.1| Rpb8 [Drosophila melanogaster]
gi|125978971|ref|XP_001353518.1| GA10862 [Drosophila pseudoobscura pseudoobscura]
gi|194875877|ref|XP_001973676.1| GG16218 [Drosophila erecta]
gi|195160970|ref|XP_002021344.1| GL24857 [Drosophila persimilis]
gi|195348643|ref|XP_002040857.1| GM22401 [Drosophila sechellia]
gi|195476786|ref|XP_002086242.1| GE23031 [Drosophila yakuba]
gi|195495435|ref|XP_002095266.1| GE19787 [Drosophila yakuba]
gi|195592244|ref|XP_002085845.1| GD14989 [Drosophila simulans]
gi|7296484|gb|AAF51770.1| Rpb8 [Drosophila melanogaster]
gi|16768368|gb|AAL28403.1| GM03174p [Drosophila melanogaster]
gi|54642281|gb|EAL31030.1| GA10862 [Drosophila pseudoobscura pseudoobscura]
gi|190655459|gb|EDV52702.1| GG16218 [Drosophila erecta]
gi|194118457|gb|EDW40500.1| GL24857 [Drosophila persimilis]
gi|194122367|gb|EDW44410.1| GM22401 [Drosophila sechellia]
gi|194181367|gb|EDW94978.1| GE19787 [Drosophila yakuba]
gi|194186032|gb|EDW99643.1| GE23031 [Drosophila yakuba]
gi|194197854|gb|EDX11430.1| GD14989 [Drosophila simulans]
gi|220942882|gb|ACL83984.1| Rpb8-PA [synthetic construct]
gi|220952982|gb|ACL89034.1| Rpb8-PA [synthetic construct]
Length = 149
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 106/144 (73%), Gaps = 2/144 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLMM 122
L DG PD+G Y P + T AD +EY+M+GK+++I GDE ++ + YVS+GGLLM
Sbjct: 64 LREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAYVSFGGLLMR 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+DQ ++LLM++L
Sbjct: 124 LQGDANNLHGFEVDQHMYLLMKRL 147
>gi|194747822|ref|XP_001956349.1| GF25165 [Drosophila ananassae]
gi|190623631|gb|EDV39155.1| GF25165 [Drosophila ananassae]
Length = 149
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 106/144 (73%), Gaps = 2/144 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLMM 122
L DG PD+G Y P + T AD +EY+M+GK+++I GDE ++ + YVS+GGLLM
Sbjct: 64 LREDGCPDSGEYNPLEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAYVSFGGLLMR 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+DQ ++LLM++L
Sbjct: 124 LQGDANNLHGFEVDQHMYLLMKRL 147
>gi|47220948|emb|CAG03481.1| unnamed protein product [Tetraodon nigroviridis]
Length = 150
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 108/145 (74%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGTPD G Y P R + AD+++Y+M+GK++KI GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTPDDGEYNPTDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|348523077|ref|XP_003449050.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Oreochromis niloticus]
Length = 150
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 108/145 (74%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGTPD G Y P R + AD+++Y+M+GK++KI GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|410921710|ref|XP_003974326.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Takifugu rubripes]
Length = 150
Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 108/145 (74%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGTPD G Y P R + AD+++Y+M+GK++KI GDE S + + + Y+SYGGLLM
Sbjct: 64 LYEDGTPDDGEYNPTDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYISYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|62955177|ref|NP_001017600.1| uncharacterized protein LOC550263 [Danio rerio]
gi|62204372|gb|AAH92853.1| Zgc:110289 [Danio rerio]
gi|182890118|gb|AAI64285.1| Zgc:110289 protein [Danio rerio]
Length = 150
Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 108/145 (74%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGTPD G Y P R + AD+++Y+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRADQFDYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|432854504|ref|XP_004067933.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like isoform 1 [Oryzias latipes]
gi|432854506|ref|XP_004067934.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like isoform 2 [Oryzias latipes]
gi|432854508|ref|XP_004067935.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like isoform 3 [Oryzias latipes]
Length = 150
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 108/145 (74%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN+++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNTQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGTPD G Y P R + A +++Y+M+GK++KI GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRAAQFDYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|442762435|gb|JAA73376.1| Putative rna polymerase subunit 8, partial [Ixodes ricinus]
Length = 153
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 107/147 (72%), Gaps = 2/147 (1%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S + LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN +LYP+ +GDKF + +
Sbjct: 5 SGLFLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQLYPVDLGDKFRLVI 64
Query: 62 AHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGL 119
A TL DG PD G Y P + +D +EY+M+GK+++I GD+ SG++ + YVS+GGL
Sbjct: 65 ATTLREDGYPDDGEYNPADTGPSRSDSFEYVMYGKIYRIEGDDISGETTRLAAYVSFGGL 124
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
LM L+GDP+ + FE+D ++LLM+KL
Sbjct: 125 LMRLQGDPNNLHGFEVDNHVYLLMKKL 151
>gi|159483485|ref|XP_001699791.1| DNA-directed RNA polymerase II, 16.5 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158281733|gb|EDP07487.1| DNA-directed RNA polymerase II, 16.5 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 145
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 102/146 (69%), Gaps = 5/146 (3%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S +LFED+F V DPDGKKFD VSR HS +M + +D+N+EL+P++ DKF++ L
Sbjct: 4 SQPILFEDVFDVVDKDPDGKKFDNVSRFICHSDLYEMDLHIDINTELFPLQRNDKFSLVL 63
Query: 62 AHTLNLDGTPDTGYY-TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
A T+NLD TP + Y PG R+TL D Y+Y+MHGK+FK D ++K E++VS+GGLL
Sbjct: 64 AWTINLDATPGSEKYDAPGGRRTLMDNYDYVMHGKVFKYKDN----NMKVEVFVSFGGLL 119
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L GDP+ + E+D ++LL++KL
Sbjct: 120 MKLAGDPAKLEPIEVDNNVYLLLKKL 145
>gi|308322303|gb|ADO28289.1| DNA-directed RNA polymerases i II and III subunit rpabc3 [Ictalurus
furcatus]
Length = 150
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN+++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNTQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGTPD G Y P R + AD+++Y M+GK++KI GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTPDDGEYNPTDDRPSRADQFDYAMYGKVYKIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R +LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRGYLLMKKL 148
>gi|356557116|ref|XP_003546864.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Glycine max]
Length = 145
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 101/148 (68%), Gaps = 14/148 (9%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF DIF VEK+DPDGKK+DKVSRI A S+ CDMYMLLD+N+E+YPM ++F MAL+ +
Sbjct: 4 LLFNDIFKVEKVDPDGKKYDKVSRIVARSEKCDMYMLLDINTEIYPMGEKERFLMALSPS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIG------DEGSGKSLKAEIYVSYGG 118
L L+ T ++ DK+EYIMHG+L+ I E S L+ E+Y S+GG
Sbjct: 64 LVLN--------TKDGSVSIQDKFEYIMHGRLYNITKPQLEEKECSKPQLEVEVYASFGG 115
Query: 119 LLMMLKGDPSYVSHFELDQRLFLLMRKL 146
L +MLKG S+ F +DQ+LFLL+RK+
Sbjct: 116 LQLMLKGHASHCVKFAVDQKLFLLIRKV 143
>gi|318068052|ref|NP_001187576.1| DNA-directed RNA polymerases i II and III subunit rpabc3 [Ictalurus
punctatus]
gi|308323405|gb|ADO28839.1| DNA-directed RNA polymerases i II and III subunit rpabc3 [Ictalurus
punctatus]
Length = 150
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN+++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNTQIYPVELGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD+++Y M+GK++KI GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTSDDGEYNPTDDRPSRADQFDYAMYGKVYKIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|225706382|gb|ACO09037.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Osmerus mordax]
Length = 150
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDI V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDILDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGTPD G Y P R + AD+++Y+M+GK++KI GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|226442642|ref|NP_001140124.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Salmo
salar]
gi|221219928|gb|ACM08625.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Salmo
salar]
Length = 150
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDG KFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGMKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGTPD G Y P R + AD+++Y+M+GK++KI GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|320164301|gb|EFW41200.1| Rpb8-PA [Capsaspora owczarzaki ATCC 30864]
Length = 145
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 100/142 (70%), Gaps = 3/142 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ I+ DGKKFD+VSR+E S+N DM ++LD+NS++Y + + +KF++ LA T
Sbjct: 7 VLFEDIFEVKDINRDGKKFDRVSRLECQSENYDMALVLDINSQIYQLELSEKFSLMLAST 66
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
LN +G PD G++ + T AD +EY+MHGK+++ +E K +YVS+GGLLM +K
Sbjct: 67 LNENGVPDDGHFIRSTKNTRADNFEYVMHGKIYRCDEEDRD---KLAVYVSFGGLLMRIK 123
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GD + LD ++LL+R++
Sbjct: 124 GDARNLDKLNLDDNIYLLIRRV 145
>gi|91087535|ref|XP_970133.1| PREDICTED: similar to Rpb8 CG11246-PA [Tribolium castaneum]
gi|270009448|gb|EFA05896.1| hypothetical protein TcasGA2_TC008708 [Tribolium castaneum]
Length = 152
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 106/147 (72%), Gaps = 5/147 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKT---LADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGL 119
L DG PD+G + P +T AD +EY+M GK+++I GDE + + S + YVS+GGL
Sbjct: 64 LREDGYPDSGDWNPQGLETEGSRADSFEYVMSGKVYRIEGDEAAVEPSSRLAAYVSFGGL 123
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
LM L+GD + + FE+DQ ++LLM+K+
Sbjct: 124 LMRLQGDANNLHSFEVDQHMYLLMKKI 150
>gi|332375755|gb|AEE63018.1| unknown [Dendroctonus ponderosae]
Length = 152
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 104/147 (70%), Gaps = 5/147 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKT---LADKYEYIMHGKLFKI-GDEGS-GKSLKAEIYVSYGGL 119
L DG PD+G + P T AD +EY+M GK+++I GDE S S + YVS+GGL
Sbjct: 64 LREDGYPDSGDWNPQGLDTEGSRADSFEYVMSGKVYRIEGDEASLEPSSRLAAYVSFGGL 123
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
LM L+GD + + FE+DQ ++LLM+K+
Sbjct: 124 LMRLQGDANNLHSFEVDQHMYLLMKKI 150
>gi|383859891|ref|XP_003705425.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Megachile rotundata]
Length = 151
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 105/146 (71%), Gaps = 4/146 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLL 120
L DG PD G + ++ + AD +EY+M GK+++I GDE S + S + YVS+GGLL
Sbjct: 64 LREDGYPDGGEWNATEQEGGSRADSFEYVMSGKVYRIEGDEASNEPSSRLSAYVSFGGLL 123
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L+GD + + FE+DQ ++LLM+KL
Sbjct: 124 MRLQGDANNLHGFEIDQHMYLLMKKL 149
>gi|299116477|emb|CBN76194.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 144
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 100/142 (70%), Gaps = 4/142 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V K++PDGKKFD+V+R+E DM +LLD N ++YP++ G++ T +A T
Sbjct: 4 VLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMML 123
L+L G PD G Y P G +LADKYEY+MHG++++ + K K +++ S+GGLLM L
Sbjct: 64 LDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQ---KDTKVQVFASFGGLLMRL 120
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
GD +V++ E+D R+F L+R+
Sbjct: 121 TGDQRHVANIEVDSRVFCLLRR 142
>gi|348582696|ref|XP_003477112.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Cavia porcellus]
Length = 150
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK++KI GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|229365820|gb|ACQ57890.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Anoplopoma fimbria]
Length = 150
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L D TPD G Y P R + AD+++Y+M+GK++KI GDE S + + + YVS+GGLLM
Sbjct: 64 LYEDRTPDDGEYNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYVSFGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDARVYLLMKKL 148
>gi|156381039|ref|XP_001632074.1| predicted protein [Nematostella vectensis]
gi|156219124|gb|EDO40011.1| predicted protein [Nematostella vectensis]
Length = 148
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS++YP+ +GDKF + LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSQVYPVELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLMML 123
L DGTPD + + AD++EY+M+GK+++I GDEG + + YVSYGGLLM L
Sbjct: 64 LKEDGTPDDEFNPVDTTPSRADQFEYVMYGKVYRIEGDEGPDPASRLAAYVSYGGLLMRL 123
Query: 124 KGDPSYVSHFELDQRLFLLMRKL 146
+GD + + E D ++LLM+KL
Sbjct: 124 QGDANNLHGIEADDHVYLLMKKL 146
>gi|327285867|ref|XP_003227653.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Anolis carolinensis]
Length = 150
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNVQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|328784260|ref|XP_003250422.1| PREDICTED: sodium/potassium-transporting ATPase subunit alpha [Apis
mellifera]
Length = 1034
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 887 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 946
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLL 120
L DG PD G + ++ + AD +EY+M G +++I GDE S + S + YVS+GGLL
Sbjct: 947 LREDGYPDGGEWNATEQEGGSRADSFEYVMSGMVYRIEGDEASNEPSSRLSAYVSFGGLL 1006
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L+GD + + FE+DQ ++LLM+KL
Sbjct: 1007 MRLQGDANNLHGFEIDQHMYLLMKKL 1032
>gi|355712738|gb|AES04449.1| polymerase II polypeptide H [Mustela putorius furo]
Length = 148
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 3 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 62
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 63 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 122
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 123 RLQGDANNLHGFEVDSRVYLLMKKL 147
>gi|14589953|ref|NP_006223.2| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Homo
sapiens]
gi|21704118|ref|NP_663607.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Mus
musculus]
gi|198278428|ref|NP_001128261.1| polymerase (RNA) II (DNA directed) polypeptide H [Rattus
norvegicus]
gi|300796879|ref|NP_001178994.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Bos
taurus]
gi|343183425|ref|NP_001230270.1| polymerase (RNA) II (DNA directed) polypeptide H [Sus scrofa]
gi|50752375|ref|XP_422761.1| PREDICTED: uncharacterized protein LOC424954 isoform 2 [Gallus
gallus]
gi|57109920|ref|XP_535826.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Canis lupus familiaris]
gi|126314756|ref|XP_001363950.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Monodelphis domestica]
gi|149442170|ref|XP_001511382.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Ornithorhynchus anatinus]
gi|149731172|ref|XP_001498295.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Equus caballus]
gi|291400327|ref|XP_002716520.1| PREDICTED: RNA polymerase II, polypeptide H [Oryctolagus cuniculus]
gi|296224742|ref|XP_002758180.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Callithrix jacchus]
gi|297672670|ref|XP_002814411.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Pongo abelii]
gi|301759751|ref|XP_002915723.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Ailuropoda melanoleuca]
gi|344282361|ref|XP_003412942.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Loxodonta africana]
gi|354495054|ref|XP_003509647.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Cricetulus griseus]
gi|392352162|ref|XP_003751131.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Rattus norvegicus]
gi|395861281|ref|XP_003802918.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Otolemur garnettii]
gi|397470038|ref|XP_003806643.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 1 [Pan paniscus]
gi|397470040|ref|XP_003806644.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 2 [Pan paniscus]
gi|402860745|ref|XP_003894782.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Papio anubis]
gi|410970847|ref|XP_003991888.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Felis catus]
gi|426217790|ref|XP_004003135.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Ovis aries]
gi|20178325|sp|P52434.4|RPAB3_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC3; Short=RNA polymerases I, II, and III subunit
ABC3; AltName: Full=DNA-directed RNA polymerase II
subunit H; AltName: Full=DNA-directed RNA polymerases I,
II, and III 17.1 kDa polypeptide; AltName: Full=RPB17;
AltName: Full=RPB8 homolog; Short=hRPB8
gi|73920762|sp|Q923G2.3|RPAB3_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC3; Short=RNA polymerases I, II, and III subunit
ABC3; AltName: Full=DNA-directed RNA polymerase II
subunit H; AltName: Full=RPB17; AltName: Full=RPB8
homolog
gi|99032143|pdb|2F3I|A Chain A, Solution Structure Of A Subunit Of Rna Polymerase Ii
gi|854177|emb|CAA89060.1| RNA polymerase II subunit hRPB17 [Homo sapiens]
gi|8052523|emb|CAB92189.1| RPB8 [Homo sapiens]
gi|12653893|gb|AAH00739.1| Polymerase (RNA) II (DNA directed) polypeptide H [Homo sapiens]
gi|12805649|gb|AAH02306.1| Polymerase (RNA) II (DNA directed) polypeptide H [Mus musculus]
gi|62027575|gb|AAH92087.1| Polr2h protein [Mus musculus]
gi|74138694|dbj|BAE27163.1| unnamed protein product [Mus musculus]
gi|74179848|dbj|BAE36495.1| unnamed protein product [Mus musculus]
gi|90077816|dbj|BAE88588.1| unnamed protein product [Macaca fascicularis]
gi|116138785|gb|AAI25639.1| Polymerase (RNA) II (DNA directed) polypeptide H [Mus musculus]
gi|116138937|gb|AAI25613.1| Polymerase (RNA) II (DNA directed) polypeptide H [Mus musculus]
gi|119598653|gb|EAW78247.1| polymerase (RNA) II (DNA directed) polypeptide H, isoform CRA_b
[Homo sapiens]
gi|148665175|gb|EDK97591.1| polymerase (RNA) II (DNA directed) polypeptide H, isoform CRA_a
[Mus musculus]
gi|149019874|gb|EDL78022.1| rCG36803, isoform CRA_a [Rattus norvegicus]
gi|149019875|gb|EDL78023.1| rCG36803, isoform CRA_a [Rattus norvegicus]
gi|167774183|gb|ABZ92526.1| polymerase (RNA) II (DNA directed) polypeptide H [synthetic
construct]
gi|208967086|dbj|BAG73557.1| polymerase (RNA) II (DNA directed) polypeptide H [synthetic
construct]
gi|281354044|gb|EFB29628.1| hypothetical protein PANDA_003739 [Ailuropoda melanoleuca]
gi|296491251|tpg|DAA33314.1| TPA: polymerase (RNA) II (DNA directed) polypeptide H [Bos taurus]
gi|344241676|gb|EGV97779.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Cricetulus griseus]
gi|355559814|gb|EHH16542.1| hypothetical protein EGK_11831 [Macaca mulatta]
gi|355746844|gb|EHH51458.1| hypothetical protein EGM_10827 [Macaca fascicularis]
gi|380784277|gb|AFE64014.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Macaca
mulatta]
gi|383414217|gb|AFH30322.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Macaca
mulatta]
gi|384943672|gb|AFI35441.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Macaca
mulatta]
gi|410212058|gb|JAA03248.1| polymerase (RNA) II (DNA directed) polypeptide H [Pan troglodytes]
gi|410247880|gb|JAA11907.1| polymerase (RNA) II (DNA directed) polypeptide H [Pan troglodytes]
gi|410292670|gb|JAA24935.1| polymerase (RNA) II (DNA directed) polypeptide H [Pan troglodytes]
gi|413966194|gb|AFW90178.1| DNA-directed RNA polymerase II polypeptide H [Ailuropoda
melanoleuca]
gi|413966196|gb|AFW90179.1| DNA-directed RNA polymerase II polypeptide H [Ailuropoda
melanoleuca]
gi|431838839|gb|ELK00768.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Pteropus alecto]
gi|440893514|gb|ELR46249.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Bos
grunniens mutus]
Length = 150
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|340713851|ref|XP_003395448.1| PREDICTED: sodium/potassium-transporting ATPase subunit alpha-like
[Bombus terrestris]
Length = 1028
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 881 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 940
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLL 120
L DG PD G + ++ + AD +EY+M G +++I GDE S + S + YVS+GGLL
Sbjct: 941 LREDGYPDGGEWNATEQEGGSRADSFEYVMSGMVYRIEGDEASNEPSSRLSAYVSFGGLL 1000
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L+GD + + FE+DQ ++LLM+KL
Sbjct: 1001 MRLQGDANNLHGFEIDQHMYLLMKKL 1026
>gi|403270066|ref|XP_003927019.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 1 [Saimiri boliviensis boliviensis]
Length = 196
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 50 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 109
Query: 65 LNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 110 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 169
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 170 RLQGDANNLHGFEVDSRVYLLMKKL 194
>gi|340375556|ref|XP_003386300.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like isoform 1 [Amphimedon queenslandica]
Length = 149
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 105/144 (72%), Gaps = 2/144 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKF++VSR+ S++ M ++LDVN++LYP+ +GDKF + L T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFERVSRLFCESESFKMDLILDVNTQLYPVSLGDKFRLLLTTT 63
Query: 65 LNLDGTPDTG-YYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLMM 122
L DG PD G + T +LAD +EY+M+GK+++I G+EG+G S + YVSYGGLLM
Sbjct: 64 LREDGLPDDGDFLTTDGAPSLADAFEYVMYGKIYRIEGNEGAGDSGRLSAYVSYGGLLMR 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + F +D ++LL++K+
Sbjct: 124 LQGDANNLQGFMMDTNVYLLIKKI 147
>gi|226372734|gb|ACO51992.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Rana
catesbeiana]
Length = 150
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 108/145 (74%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+G+KFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A+T
Sbjct: 4 ILFEDIFDVKDIDPEGRKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIANT 63
Query: 65 LNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTLDGGEYNPNDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++L+M+KL
Sbjct: 124 RLQGDANNLHGFEVDSRIYLMMKKL 148
>gi|332214985|ref|XP_003256616.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 1 [Nomascus leucogenys]
gi|441633222|ref|XP_004089737.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Nomascus leucogenys]
gi|441633225|ref|XP_004089738.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Nomascus leucogenys]
Length = 229
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 83 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 142
Query: 65 LNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 143 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 202
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 203 RLQGDANNLHGFEVDSRVYLLMKKL 227
>gi|410350391|gb|JAA41799.1| polymerase (RNA) II (DNA directed) polypeptide H [Pan troglodytes]
Length = 196
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 50 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 109
Query: 65 LNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 110 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 169
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 170 RLQGDANNLHGFEVDSRVYLLMKKL 194
>gi|62859379|ref|NP_001016113.1| polymerase (RNA) II (DNA directed) polypeptide H [Xenopus
(Silurana) tropicalis]
Length = 150
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+G+KFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGRKFDRVSRLHCESESFKMDLILDVNIQVYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EYIM+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYIMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|417408235|gb|JAA50681.1| Putative rna polymerase rpb8, partial [Desmodus rotundus]
Length = 160
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 14 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 73
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 74 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 133
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 134 RLQGDANNLHGFEVDSRVYLLMKKL 158
>gi|328771615|gb|EGF81655.1| hypothetical protein BATDEDRAFT_10541, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 151
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 101/154 (65%), Gaps = 17/154 (11%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+DIF + IDP GKKFD+VSRI A S+N DM + LD+N+E+YP+R DKFT+ALA TL
Sbjct: 1 LFQDIFEITDIDPHGKKFDRVSRIVATSENIDMGVTLDINTEIYPLRPSDKFTLALASTL 60
Query: 66 NLDGTP----------DTGYYTPGA----RKTLADKYEYIMHGKLFKIGDEGSGKSLKAE 111
LDG P D + TP + +K+LAD Y+Y+M+GK++K DEG K
Sbjct: 61 ALDGNPVDTSKKQPWRDPSFATPSSGTTGKKSLADDYDYVMYGKVYKYEDEGGA---KVS 117
Query: 112 IYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+Y S+GGLLM L GD + + + Q ++LLMRK
Sbjct: 118 VYASFGGLLMCLAGDFRQLQNLNVGQYIYLLMRK 151
>gi|148232948|ref|NP_001085470.1| polymerase (RNA) II (DNA directed) polypeptide H [Xenopus laevis]
gi|49117881|gb|AAH72811.1| MGC80152 protein [Xenopus laevis]
Length = 150
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+G+KFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGRKFDRVSRLHCESESFKMDLILDVNIQVYPVDLGDKFRLVVAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EYIM+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYIMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|225714988|gb|ACO13340.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Esox
lucius]
Length = 150
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 105/145 (72%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDG KFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGMKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGTPD G Y P R + D+++Y+M+GK++KI DE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTPDDGEYNPQDERPSRTDQFDYVMYGKVYKIESDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|380024940|ref|XP_003696244.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Apis florea]
Length = 151
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLL 120
L DG PD G + ++ + AD +EY+M G +++I GDE S + S + YVS+GGLL
Sbjct: 64 LREDGYPDGGEWNATEQEGGSRADSFEYVMSGMVYRIEGDEASNEPSSRLSAYVSFGGLL 123
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L+GD + + FE+DQ ++LLM+KL
Sbjct: 124 MRLQGDANNLHGFEIDQHMYLLMKKL 149
>gi|297286221|ref|XP_002802930.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Macaca mulatta]
Length = 150
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGG+LM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGVLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|440792757|gb|ELR13965.1| hypothetical protein ACA1_365330 [Acanthamoeba castellanii str.
Neff]
Length = 140
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 100/141 (70%), Gaps = 6/141 (4%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
FED F V+ IDP+GK FDKVSR+E S + DM +LLDVN+++YP+ +GDK T+ALA +L
Sbjct: 4 FFEDTFEVKNIDPEGKIFDKVSRLECSSVSYDMQLLLDVNTDIYPVELGDKLTVALAKSL 63
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFK-IGDEGSGKSLKAEIYVSYGGLLMMLK 124
D D G + R +LAD+YEY+M+GK+FK + D+GS K +VS+GGLLMMLK
Sbjct: 64 T-DNEMDDGIFDQSGRASLADEYEYVMYGKVFKCLEDKGS----KVSTFVSFGGLLMMLK 118
Query: 125 GDPSYVSHFELDQRLFLLMRK 145
GD + + +D R++LLMRK
Sbjct: 119 GDAAQLEKITVDHRIYLLMRK 139
>gi|350409622|ref|XP_003488796.1| PREDICTED: sodium/potassium-transporting ATPase subunit alpha-like
[Bombus impatiens]
Length = 1028
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 103/146 (70%), Gaps = 4/146 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+N LYPM +GDKF + LA T
Sbjct: 881 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINCWLYPMELGDKFRLVLATT 940
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLL 120
L DG PD G + ++ + AD +EY+M G +++I GDE S + S + YVS+GGLL
Sbjct: 941 LREDGYPDGGEWNATEQEGGSRADSFEYVMSGMVYRIEGDEASNEPSSRLSAYVSFGGLL 1000
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L+GD + + FE+DQ ++LLM+KL
Sbjct: 1001 MRLQGDANNLHGFEIDQHMYLLMKKL 1026
>gi|1017823|gb|AAA91458.1| RNA polymerase II subunit [Homo sapiens]
Length = 150
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 106/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+ KKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEAKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>gi|240849191|ref|NP_001155816.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Acyrthosiphon pisum]
gi|239790676|dbj|BAH71885.1| ACYPI009782 [Acyrthosiphon pisum]
Length = 154
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 109/155 (70%), Gaps = 12/155 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ ++FEDIF V+ IDP+GK+FD+VSR+ S++ M ++LD+NS +YPM +GDKF +
Sbjct: 1 MAQGMVFEDIFNVKDIDPNGKQFDRVSRLHCESESFKMELILDINSWIYPMDLGDKFRLV 60
Query: 61 LAHTLNLDGTPDTGYYTP------GARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEI- 112
LA TL DG PD G + P G R AD +EY+M+GK+++I GD+ +S K ++
Sbjct: 61 LATTLREDGQPDAGDWNPIEMDQNGCR---ADSFEYVMYGKIYRIEGDDKVKESHKNKLA 117
Query: 113 -YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
YVS+GGLLM L GDP+ + FE+DQ ++LLM+KL
Sbjct: 118 AYVSFGGLLMRLLGDPNNLHGFEVDQCVYLLMKKL 152
>gi|196004676|ref|XP_002112205.1| hypothetical protein TRIADDRAFT_56007 [Trichoplax adhaerens]
gi|190586104|gb|EDV26172.1| hypothetical protein TRIADDRAFT_56007 [Trichoplax adhaerens]
Length = 147
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 102/146 (69%), Gaps = 8/146 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDPDGKKF +VSR+ S++ M ++LD+NS+LYP+ GDKF + LA T
Sbjct: 4 VLFEDIFDVKDIDPDGKKFHRVSRLICDSESFKMELILDINSQLYPVEDGDKFRLMLAST 63
Query: 65 LNLDGTPDTGYYTP----GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
L DG D G Y P G+ K AD +EY+M+GK++++ EG S K +Y+SYGGLL
Sbjct: 64 LREDGIADDGEYNPLGVNGSNK--ADNFEYVMYGKIYRL--EGDEDSAKIAVYISYGGLL 119
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L+GDP+ + F +D ++LL++KL
Sbjct: 120 MRLQGDPNNLQGFSVDNHVYLLIKKL 145
>gi|356525614|ref|XP_003531419.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Glycine max]
Length = 160
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 102/163 (62%), Gaps = 29/163 (17%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+DIF VEK+DPDGKK+DKVSRI A S+ CDM MLLDVN+E+YPM ++F MAL+ +
Sbjct: 4 LLFDDIFKVEKVDPDGKKYDKVSRIVARSEKCDMNMLLDVNTEIYPMGEKERFLMALSPS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI---------------------GDEG 103
L L+ T ++ DK+EYIMHG+L+ I +E
Sbjct: 64 LVLN--------TKDGSVSIQDKFEYIMHGRLYNITKPQLEKKEKKEKRSESQPEENEEC 115
Query: 104 SGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
S L+ E+Y S+GGL +MLKG S+ F +DQ+LFLL+RK+
Sbjct: 116 SKPQLEVEVYASFGGLQLMLKGHASHCVKFAVDQKLFLLIRKV 158
>gi|324529588|gb|ADY49022.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Ascaris
suum]
Length = 149
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS +LF+D+F+V+ +DPDGKKFD+VSR+ S++ M ++LDVN++LYPM + DKF +
Sbjct: 1 MSTGILFDDMFLVKDVDPDGKKFDRVSRLFCDSESFKMELILDVNTQLYPMHLNDKFRLM 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGL 119
LA TL DG PD Y P D +EY+M GK+++I G+E S +S Y S+GGL
Sbjct: 61 LATTLRDDGLPDEPEYDPLVSYPRMDPFEYVMFGKVYRIEGEESSAESNTLAAYASFGGL 120
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
LM LKGD + + FELD ++LLM+K+
Sbjct: 121 LMRLKGDANNLHGFELDSNIYLLMKKV 147
>gi|156552268|ref|XP_001599582.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Nasonia vitripennis]
Length = 151
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 103/146 (70%), Gaps = 4/146 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDPDGKKFD+V R+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPDGKKFDRVIRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLL 120
L DG PD G + + + A+ +EY+M GK+++I GDE + + S + YVS+GGLL
Sbjct: 64 LREDGYPDGGDWNAAEMEGGSRANSFEYVMSGKVYRIEGDEANNEPSSRLSAYVSFGGLL 123
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L+GD + + FE+DQ ++LLM+KL
Sbjct: 124 MRLQGDANNLHGFEIDQHMYLLMKKL 149
>gi|225709858|gb|ACO10775.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Caligus
rogercresseyi]
Length = 150
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 106/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS +YPM +GDKF + LA+T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMDLGDKFRLVLANT 63
Query: 65 LNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDE-GSGKSLKAEIYVSYGGLLM 121
L DG PD+G + P + + AD +E++M+GK+++I GDE S S + YVS+GGLLM
Sbjct: 64 LREDGFPDSGEWNPTESGPSRADSFEHVMYGKIYRIEGDELSSETSGRLGAYVSFGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D ++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDHYIYLLMKKL 148
>gi|225711886|gb|ACO11789.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Lepeophtheirus salmonis]
gi|290462623|gb|ADD24359.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Lepeophtheirus salmonis]
gi|290561607|gb|ADD38203.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Lepeophtheirus salmonis]
Length = 150
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 106/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS +YP+ +GDKF + LA+T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPIELGDKFRLVLANT 63
Query: 65 LNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDE-GSGKSLKAEIYVSYGGLLM 121
L DG PD+G + P + + AD +E++M+GK+++I GDE S S + YVS+GGLLM
Sbjct: 64 LREDGFPDSGEWNPTESGPSRADSFEHVMYGKIYRIEGDEISSETSGRLAAYVSFGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D ++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDHYVYLLMKKL 148
>gi|198432602|ref|XP_002122918.1| PREDICTED: similar to RNA polymerase II, polypeptide H [Ciona
intestinalis]
Length = 152
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 108/150 (72%), Gaps = 4/150 (2%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ +LFEDIF ++ +DP+GKKFD+VSR+ S++ M ++LD+N++LYP+ +GDKF +
Sbjct: 1 MATGLLFEDIFDIKDVDPEGKKFDRVSRLHCDSESFKMELILDINTQLYPVELGDKFRLV 60
Query: 61 LAHTLNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSY 116
LA TL+ DGTP G + P K T AD++EY+M+GK+++I G+E G + K YVS+
Sbjct: 61 LATTLSEDGTPADGEFNPLWEKNPTRADQFEYVMYGKVYRIEGEESVGDVASKLSAYVSF 120
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
GGLLM L+GD + + +DQ L+LL++KL
Sbjct: 121 GGLLMRLQGDANNLHGMTVDQNLYLLLKKL 150
>gi|242008804|ref|XP_002425189.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212508897|gb|EEB12451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 150
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 106/148 (71%), Gaps = 9/148 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+G+KFD+VSR+ S++ M ++LDVN+ LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPEGRKFDRVSRLHCESESFKMDLILDVNTWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTP----GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGG 118
L DG PD+G + P G+R AD +EY+M+G ++I GD+ S + S + YVS+GG
Sbjct: 64 LREDGYPDSGEWNPLDNEGSR---ADSFEYVMYGLNYRIEGDDSSPETSSRLAAYVSFGG 120
Query: 119 LLMMLKGDPSYVSHFELDQRLFLLMRKL 146
LLM L+GD + + FE+DQ L+LL++KL
Sbjct: 121 LLMRLQGDANNLHGFEVDQHLYLLIKKL 148
>gi|340375558|ref|XP_003386301.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like isoform 2 [Amphimedon queenslandica]
Length = 150
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 105/145 (72%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKF++VSR+ S++ M ++LDVN++LYP+ +GDKF + L T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFERVSRLFCESESFKMDLILDVNTQLYPVSLGDKFRLLLTTT 63
Query: 65 LNLDGTPDTG-YYTPGARKT-LADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLM 121
L DG PD G + T G + + D +EY+M+GK+++I G+EG+G S + YVSYGGLLM
Sbjct: 64 LREDGLPDDGDFLTTGTNWSRVTDAFEYVMYGKIYRIEGNEGAGDSGRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + F +D ++LL++K+
Sbjct: 124 RLQGDANNLQGFMMDTNVYLLIKKI 148
>gi|321477401|gb|EFX88360.1| hypothetical protein DAPPUDRAFT_191687 [Daphnia pulex]
Length = 151
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 103/146 (70%), Gaps = 4/146 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS L+PM +GDKF + LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLFPMDLGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPG--ARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLL 120
L DG D G + P + AD +EY+M GK+++I GDEGS + S + Y S+GGLL
Sbjct: 64 LREDGCSDAGEWAPQDLGIPSRADSFEYVMFGKVYRIEGDEGSTEPSSRLSAYASFGGLL 123
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L+GD + + FE+D +++LL++KL
Sbjct: 124 MRLQGDANNLHGFEVDAQIYLLIKKL 149
>gi|330796110|ref|XP_003286112.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325083931|gb|EGC37371.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 141
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 102/141 (72%), Gaps = 4/141 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFED F V++IDPDGKKFD+ SR +S+N +M + +D+ + +YP+ ++F + LA +
Sbjct: 4 ILFEDTFEVKEIDPDGKKFDRTSRFVCYSENYEMDLQIDIATHIYPLG-HERFKLLLASS 62
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
LNLDG+ DTG Y + +LADKYEY+M+GK+FK E S S K ++ S+GGLLM+L+
Sbjct: 63 LNLDGSADTGSYDTN-KPSLADKYEYVMYGKVFKYQKENS--SSKVSVFASFGGLLMLLQ 119
Query: 125 GDPSYVSHFELDQRLFLLMRK 145
GDP Y+ ELD R++LL++K
Sbjct: 120 GDPRYLPGIELDARIYLLIKK 140
>gi|428186268|gb|EKX55118.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Guillardia theta CCMP2712]
Length = 142
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 97/142 (68%), Gaps = 2/142 (1%)
Query: 4 IVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
+ L ED+F V+ ID DGKKFD VSRI+A SQ + + +D+N+E+YPM++ D+F+MAL+
Sbjct: 2 VFLLEDLFDVKDIDQDGKKFDNVSRIQALSQTYGLELTIDINTEIYPMKIFDRFSMALST 61
Query: 64 TLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMML 123
L DG PD G Y +T AD +EY+MHGK+FK + + ++VS+GGLLM L
Sbjct: 62 NLRKDGEPDEGVYDQSGVETFADDFEYVMHGKVFKQYRKPGETEMS--VFVSFGGLLMHL 119
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
+GD ++ ELD +++LLMRK
Sbjct: 120 RGDEQQLNKLELDTKVYLLMRK 141
>gi|308808500|ref|XP_003081560.1| Glyoxylase (ISS) [Ostreococcus tauri]
gi|116060025|emb|CAL56084.1| Glyoxylase (ISS) [Ostreococcus tauri]
Length = 602
Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats.
Identities = 65/138 (47%), Positives = 96/138 (69%), Gaps = 1/138 (0%)
Query: 7 FEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLN 66
FED+F V DPDGKKFD+VSR + S+ D + +DVN ++YP+ VG +F++ALA TL+
Sbjct: 25 FEDMFEVIDRDPDGKKFDRVSRYKCRSE-FDAELTIDVNVDVYPLSVGQRFSLALAPTLS 83
Query: 67 LDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGD 126
LDG+P+ + + +LAD YEY+M+GK +K +E +G +A +VS+GGLLM LK D
Sbjct: 84 LDGSPEDDAFDQSGKPSLADGYEYVMYGKCYKKVEENAGGLTRASAFVSFGGLLMNLKAD 143
Query: 127 PSYVSHFELDQRLFLLMR 144
P + ++D R++LLMR
Sbjct: 144 PKSLQEVDVDDRIYLLMR 161
>gi|170039405|ref|XP_001847525.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
gi|170068116|ref|XP_001868741.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
gi|167863002|gb|EDS26385.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
gi|167864217|gb|EDS27600.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
Length = 150
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ +DP+GKKFD+ SR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 ILFEDIFNVKDMDPEGKKFDRSSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGA-RKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L+ DGTP + Y + AD +EY+M GK+++I GD+ +S + YVS+GGLLM
Sbjct: 64 LHEDGTPASMEYNAAEIEGSRADSFEYVMFGKVYRIEGDDAQTESANRLSAYVSFGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+DQ ++LLM+KL
Sbjct: 124 RLQGDANNLHGFEIDQHMYLLMKKL 148
>gi|388518039|gb|AFK47081.1| unknown [Lotus japonicus]
Length = 138
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 9/142 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+ F+DIF VE +DPDGKK+DKVSRIEA S+ DMYMLLDVN+E+YPM+ +KF MAL+ +
Sbjct: 4 IFFDDIFKVENLDPDGKKYDKVSRIEARSEKRDMYMLLDVNTEIYPMKENEKFLMALSPS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
L L+ T + +K+EYIMHG+L+ I ++ + + E+Y S+GGL +ML+
Sbjct: 64 LVLN--------TKDGSVPIHEKFEYIMHGRLYNITNDEKSQH-EVEVYASFGGLQLMLR 114
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
G S +DQ+LFLL+RK+
Sbjct: 115 GHVSRCVKLAVDQKLFLLIRKI 136
>gi|115698828|ref|XP_796332.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Strongylocentrotus purpuratus]
Length = 151
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 103/146 (70%), Gaps = 4/146 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN++ YP+ +GDKF + LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNTQQYPVDLGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTP--GARKTLADKYEYIMHGKLFKI-GDEG-SGKSLKAEIYVSYGGLL 120
L DG PD YTP + + AD +EY+M GK+++I GDE + + K Y+SYGGLL
Sbjct: 64 LREDGFPDEPDYTPLDDGQPSRADSFEYVMFGKVYRIEGDESLTEAATKLSAYMSYGGLL 123
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L+GD + + EL+Q ++LLM+KL
Sbjct: 124 MRLQGDANNLHGVELNQHVYLLMKKL 149
>gi|157107468|ref|XP_001649793.1| DNA-directed RNA polymerase subunit rpb8 [Aedes aegypti]
gi|108884079|gb|EAT48304.1| AAEL000677-PA [Aedes aegypti]
Length = 150
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ +DP+GKKFD+ SR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 ILFEDIFNVKDMDPEGKKFDRASRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGA-RKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L+ DGTP + Y + AD +EY+M GK+++I GD+ +S + YVS+GGLLM
Sbjct: 64 LHEDGTPASMEYNAAEIEGSRADSFEYVMFGKVYRIEGDDAQLESANRLSAYVSFGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+DQ ++LLM+KL
Sbjct: 124 RLQGDANNLHGFEIDQHMYLLMKKL 148
>gi|391343666|ref|XP_003746128.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Metaseiulus occidentalis]
Length = 151
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 107/146 (73%), Gaps = 4/146 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+ +R+ S++ M ++LD+NS++Y + +GDKF + +A +
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRCARLHCESESFKMDLILDINSQVYNVELGDKFRLVIAAS 63
Query: 65 LNLDGT-PDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEG-SGKSLKAEIYVSYGGLL 120
L DG+ PD+G Y P T AD++EY+M+GK+++I GD+ +G+ + YVS+GGLL
Sbjct: 64 LREDGSDPDSGDYNPADDTPTRADQFEYVMYGKIYRIEGDDATTGECTRLAAYVSFGGLL 123
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L+GDP+ + F++D ++LLM+KL
Sbjct: 124 MRLQGDPNNLHGFDVDNHVYLLMKKL 149
>gi|302843796|ref|XP_002953439.1| hypothetical protein VOLCADRAFT_82285 [Volvox carteri f.
nagariensis]
gi|300261198|gb|EFJ45412.1| hypothetical protein VOLCADRAFT_82285 [Volvox carteri f.
nagariensis]
Length = 148
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 99/149 (66%), Gaps = 8/149 (5%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S +LFED+F V DPDGKKFD VSR HS +M + +D+N EL+P++ DKF++ L
Sbjct: 4 SQPILFEDVFDVVDKDPDGKKFDSVSRFICHSDLYEMDLHIDLNVELFPLQRNDKFSLVL 63
Query: 62 AHTLNLDGTPDTGYYTP----GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
A TLNLD TP + Y R+TL D Y+Y+M+GK+FK D ++K E+Y+S+G
Sbjct: 64 AWTLNLDATPGSEKYDAFPAISGRRTLMDNYDYVMYGKVFKYKDN----NMKVEVYISFG 119
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
GLLM L GDP+ + E+D ++LL++KL
Sbjct: 120 GLLMKLAGDPAKLEPIEVDSNVYLLLKKL 148
>gi|58393552|ref|XP_320161.2| AGAP012397-PA [Anopheles gambiae str. PEST]
gi|55234259|gb|EAA00358.2| AGAP012397-PA [Anopheles gambiae str. PEST]
Length = 150
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYP+ +GDKF + LA T
Sbjct: 4 ILFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPLELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGA-RKTLADKYEYIMHGKLFKI-GDEGSGKSL-KAEIYVSYGGLLM 121
L+ DGT + Y + AD +EY+M GK+++I GD+ +S + YVS+GGLLM
Sbjct: 64 LHEDGTAASMEYNAAEIEGSRADSFEYVMFGKVYRIEGDDSQTESSNRLSAYVSFGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+DQ +FLLM+KL
Sbjct: 124 RLQGDANNLHGFEIDQHMFLLMKKL 148
>gi|333449457|gb|AEF33414.1| DNA-directed RNA polymerases I/II/III subunit rpabc3 [Crassostrea
ariakensis]
Length = 149
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN+++YP+ +GDKF M LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLFLWSESFKMDLILDVNTQIYPVDLGDKFRMVLAKT 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLMM 122
L DGTPD G Y P + AD +EY+M GK++ I GD+ + YVSYGGLLM
Sbjct: 64 LREDGTPDDGEYNPTDTGPSRADSFEYVMPGKVYPIEGDDTGPDFSRLAGYVSYGGLLMR 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D ++L ++KL
Sbjct: 124 LQGDANNLHGFEVDSFVYLFIKKL 147
>gi|66816149|ref|XP_642084.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74856819|sp|Q54YW8.1|RPAB3_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc3; Short=RNA polymerases I, II, and III subunit
ABC3; AltName: Full=RNA polymerase B subunit 8;
Short=RPB8; AltName: Full=RPB17
gi|60470212|gb|EAL68192.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 142
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 100/141 (70%), Gaps = 3/141 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFED F V++IDPDGKKFD+VSR +S+N +M + +D+ + +YP+ ++F M LA +
Sbjct: 4 ILFEDTFEVKEIDPDGKKFDRVSRFVCYSENYEMDLQIDIATHIYPLG-HERFKMVLASS 62
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
LNLDG+ D + +LADKY+Y+M+GK+FK E S S K ++ S+GGLL++L+
Sbjct: 63 LNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIFKYQKENS--SSKVSVFASFGGLLVLLQ 120
Query: 125 GDPSYVSHFELDQRLFLLMRK 145
GDP Y+ ELD R++LL++K
Sbjct: 121 GDPRYLPGIELDARIYLLIKK 141
>gi|145351501|ref|XP_001420114.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580347|gb|ABO98407.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 136
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
Query: 10 IFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDG 69
+F V DPDGKKFD+VSR + S+ D + +DVN ++YP+ VG +F++ALA TL+LDG
Sbjct: 1 MFEVIDRDPDGKKFDRVSRYKCRSE-FDAELTIDVNVDVYPLTVGQRFSLALAPTLSLDG 59
Query: 70 TPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSY 129
TP+ + + +LAD YEY+M+GK +K DE +G +A Y+S+GGLLM LK DP
Sbjct: 60 TPEDDAFDQSGKPSLADGYEYVMYGKCYKKVDENAGGLTRASAYISFGGLLMNLKADPKN 119
Query: 130 VSHFELDQRLFLLMRKL 146
+ E+D R++LLMR +
Sbjct: 120 LQEIEIDDRIYLLMRAV 136
>gi|255073075|ref|XP_002500212.1| predicted protein [Micromonas sp. RCC299]
gi|226515474|gb|ACO61470.1| predicted protein [Micromonas sp. RCC299]
Length = 151
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+++ +EDIF V DPDGKKFDKVSR SQ + + +D+N ++Y + VG +FT+ L+
Sbjct: 8 SVIAYEDIFEVIDRDPDGKKFDKVSRFRCRSQ-FEADLEIDINVDIYKLDVGTRFTLVLS 66
Query: 63 HTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMM 122
TL+LDGTP+ Y ++TLA Y+Y+M+GK+FK DE +G K + S+GGLLM
Sbjct: 67 PTLSLDGTPEDPSYDQTGKETLASSYDYVMYGKVFKKEDENAGGIQKTTVIASFGGLLMR 126
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
+K DP + ++D R+++L+RK+
Sbjct: 127 IKADPKNLQEVDIDNRVYVLIRKI 150
>gi|402593823|gb|EJW87750.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 149
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS +LF+D+F+V+ +DP+GKKFD+VSR+ S++ M ++LDVN++LYPM + DKF +
Sbjct: 1 MSTGILFDDMFLVKDVDPEGKKFDRVSRLFCDSESFKMELILDVNTQLYPMNLNDKFRLL 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGL 119
LA TL DG PD + D +EY+M GK+++I G+E S ++ Y S+GGL
Sbjct: 61 LATTLRDDGLPDEREFDNQTHYPRLDPFEYVMFGKVYRIEGEESSSETNTLAAYASFGGL 120
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
LM LKGD + + FELD ++LLM+K+
Sbjct: 121 LMRLKGDANNLHGFELDSGIYLLMKKV 147
>gi|219125940|ref|XP_002183227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405502|gb|EEC45445.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 149
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 6/147 (4%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+ + LFEDIF + ++PDG KF++V+RI+A + +LLD+N E+Y +R DKFT+ L
Sbjct: 5 AKVTLFEDIFEITALNPDGYKFERVNRIQATGTTFECELLLDINCEIYTLRETDKFTLVL 64
Query: 62 AHTLNLDGTP-DTGYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGG 118
A TL+LDG+P D Y P A +LAD YEY+MHG++F + + G + I +SYGG
Sbjct: 65 ASTLHLDGSPADHFSYVPANSAEPSLADNYEYVMHGRVFDMSYQKDGTVV---IAISYGG 121
Query: 119 LLMMLKGDPSYVSHFELDQRLFLLMRK 145
LLM L GD ++S DQRL+LL++K
Sbjct: 122 LLMRLTGDQRHLSSILPDQRLYLLLKK 148
>gi|331226938|ref|XP_003326138.1| DNA-directed RNA polymerase II subunit H [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309305128|gb|EFP81719.1| DNA-directed RNA polymerase II subunit H [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 148
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 97/146 (66%), Gaps = 8/146 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+D+F + +D DGKKFD+VSR+ A S N M ++LD N ELYP++VGD F +AL+ +
Sbjct: 6 LLFDDLFTITNVDKDGKKFDRVSRLNASSTNHSMTLVLDFNVELYPLKVGDSFALALSSS 65
Query: 65 LNLDGTPDTGYYTPGAR-----KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
L +G D+G T R LAD+YEY+M+GKL+K D G+ S+ A Y+S+GGL
Sbjct: 66 LTPEGEKDSGIETQSWRLEEGKGGLADEYEYVMYGKLYKF-DSGASDSVTA--YISFGGL 122
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRK 145
LM L GD ++ + Q +FLLMR+
Sbjct: 123 LMALTGDYRHLDRLTVGQMVFLLMRR 148
>gi|313238106|emb|CBY19960.1| unnamed protein product [Oikopleura dioica]
gi|313240808|emb|CBY33100.1| unnamed protein product [Oikopleura dioica]
Length = 149
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VL+E+IF ++ IDP+GK+F++V RI A ++ M ++LDVNS LY + GDKF + LA T
Sbjct: 4 VLYEEIFNIKDIDPEGKQFERVKRIHAECESSKMELILDVNSLLYSPQPGDKFRLMLATT 63
Query: 65 LNLDGTPDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMM 122
LN DG PD G Y P + T ++YIMHG +++I + + + E+Y+S+GGLLM
Sbjct: 64 LNDDGEPDAGEYDPRWEEKSTRTAAFDYIMHGLIYRISGDEADTVTRLEVYISFGGLLMR 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
L G+ + +S ++D++++LL+RKL
Sbjct: 124 LNGEVNSLSEIKIDEKVYLLLRKL 147
>gi|357607597|gb|EHJ65602.1| hypothetical protein KGM_12645 [Danaus plexippus]
Length = 150
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 100/145 (68%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ +D GKKFD+VSR+ S++ M ++LD+NS +YPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDMDQGGKKFDRVSRLHCESESFKMDLILDINSWIYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDE-GSGKSLKAEIYVSYGGLLM 121
L +G PD G + P AD +EY+M+GK++++ GDE + + +VS+GGLLM
Sbjct: 64 LRENGYPDGGEWNPLETEGNRADSFEYVMYGKVYRLDGDELAMEPTSRLSAFVSFGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+DQ ++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDQHMYLLMKKL 148
>gi|170584078|ref|XP_001896848.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Brugia malayi]
gi|158595811|gb|EDP34310.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Brugia malayi]
Length = 149
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ +LF+D+F+V+ +DP+GKKFD+VSR+ S++ M ++LDVN++LYPM + DKF +
Sbjct: 1 MATGILFDDMFLVKDVDPEGKKFDRVSRLFCDSESFKMELILDVNTQLYPMNLNDKFRLL 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGL 119
LA TL DG PD + D +EY+M GK+++I G+E S ++ Y S+GGL
Sbjct: 61 LATTLRDDGLPDEREFDNQTHYPRLDPFEYVMFGKVYRIEGEESSSETNTLAAYASFGGL 120
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
LM LKGD + + FELD ++LLM+K+
Sbjct: 121 LMRLKGDANNLHGFELDSGIYLLMKKV 147
>gi|393909969|gb|EFO27685.2| DNA-directed RNA polymerase I [Loa loa]
Length = 161
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ +LF+D+F+V+ +DP+GKKFD+VSR+ S++ M ++LDVN++LYPM + DKF +
Sbjct: 13 MATGILFDDMFLVKDVDPEGKKFDRVSRLFCDSESFKMELILDVNTQLYPMNLNDKFRLL 72
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGL 119
LA TL DG PD + D +EY+M GK+++I G+E + ++ Y S+GGL
Sbjct: 73 LATTLRDDGLPDEREFDNQTHYPRLDPFEYVMFGKVYRIEGEESNSETNTLAAYASFGGL 132
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
LM LKGD + + FELD ++LLM+K+
Sbjct: 133 LMRLKGDANNLHGFELDSSIYLLMKKV 159
>gi|260790939|ref|XP_002590498.1| hypothetical protein BRAFLDRAFT_59621 [Branchiostoma floridae]
gi|229275692|gb|EEN46509.1| hypothetical protein BRAFLDRAFT_59621 [Branchiostoma floridae]
Length = 162
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 103/157 (65%), Gaps = 15/157 (9%)
Query: 5 VLFEDIFVVEKIDPDGKKFDK------------VSRIEAHSQNCDMYMLLDVNSELYPMR 52
VLFEDIF V+ IDPDGKKFD+ +SR+ S++ M ++LDVN+++YP+
Sbjct: 4 VLFEDIFDVKDIDPDGKKFDRGEKFSFISQIVYLSRLHCESESFKMELILDVNTQVYPVD 63
Query: 53 VGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI--GDEGSGKSLK 109
+GDKF + LA TL DG PD G Y P + AD++EY+M+GK+++I D + + +
Sbjct: 64 IGDKFRLVLASTLREDGAPDDGEYIPNDGTPSRADQFEYVMYGKIYRIEGDDTHTETATR 123
Query: 110 AEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
YVSYGGLLM L+GD + + E+D+ ++LL++KL
Sbjct: 124 LSAYVSYGGLLMRLQGDANNLHGMEVDKHVYLLIKKL 160
>gi|312066684|ref|XP_003136387.1| DNA-directed RNA polymerase I [Loa loa]
Length = 149
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ +LF+D+F+V+ +DP+GKKFD+VSR+ S++ M ++LDVN++LYPM + DKF +
Sbjct: 1 MATGILFDDMFLVKDVDPEGKKFDRVSRLFCDSESFKMELILDVNTQLYPMNLNDKFRLL 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGL 119
LA TL DG PD + D +EY+M GK+++I G+E + ++ Y S+GGL
Sbjct: 61 LATTLRDDGLPDEREFDNQTHYPRLDPFEYVMFGKVYRIEGEESNSETNTLAAYASFGGL 120
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
LM LKGD + + FELD ++LLM+K+
Sbjct: 121 LMRLKGDANNLHGFELDSSIYLLMKKV 147
>gi|452824724|gb|EME31725.1| DNA-directed RNA polymerase II subunit H [Galdieria sulphuraria]
Length = 154
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 17/155 (10%)
Query: 5 VLFEDIFVVEKID-------PD----GKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRV 53
VLFED+F V ++D P KKFDKVSRI + +N +LLD+N+E+YP+
Sbjct: 4 VLFEDVFSVTEVDMVKDPKDPSRKIKEKKFDKVSRILCYGENYQTELLLDINNEIYPIVE 63
Query: 54 GDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIY 113
+KF M LA TL+LDG PD G Y P +L DK+EY M+GK+FK +E GKS+ +Y
Sbjct: 64 KEKFEMVLAPTLSLDGRPDDGLYHPSEEPSLLDKFEYGMYGKIFKFAEE-VGKSV---VY 119
Query: 114 VSYGGLLMMLKGDPSYVS--HFELDQRLFLLMRKL 146
+S+GGLLM LKG+P ++ FE+D +++L+RKL
Sbjct: 120 ISFGGLLMALKGEPRIITPQSFEVDSGIYILIRKL 154
>gi|384496019|gb|EIE86510.1| hypothetical protein RO3G_11221 [Rhizopus delemar RA 99-880]
Length = 155
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 101/151 (66%), Gaps = 11/151 (7%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+DIF ++ +DP GK+FD+VSR+ A S+N +M + LD NSE+YP+ G+KF+ LA +
Sbjct: 6 ILFQDIFDIKDLDPQGKRFDRVSRLIARSENYEMDLTLDFNSEIYPLNTGEKFSFVLASS 65
Query: 65 LNLDGTPDTG---------YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSL-KAEIYV 114
L+L+ + +TG PG R L+D+YEY+M GK++K D G + + +YV
Sbjct: 66 LSLEASANTGGVEKRESWRERAPGERD-LSDEYEYVMFGKVYKFEDSNKGAAAQQVSVYV 124
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
SYGGLLM L+GD ++ + + + ++LL+RK
Sbjct: 125 SYGGLLMCLEGDYRHLQNLTVGENIYLLIRK 155
>gi|384245849|gb|EIE19341.1| hypothetical protein COCSUDRAFT_44692 [Coccomyxa subellipsoidea
C-169]
Length = 149
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 95/144 (65%), Gaps = 4/144 (2%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF D+F V + DPDGK+FDKVSR HS M ++LD+N+++YP++VG++ + LA T+
Sbjct: 5 LFNDVFEVLEKDPDGKQFDKVSRFRCHSDLFGMGLMLDINTDIYPVKVGERLRLVLAPTI 64
Query: 66 NLDGTPDTGYYTPG---ARKTLADKYEYIMHGKLFKIGDEGSGKSLKA-EIYVSYGGLLM 121
NLD TP G Y +RKT D++EY+ +GK+FK D G + ++Y+S+GGLLM
Sbjct: 65 NLDDTPTDGTYNAAMQSSRKTKMDEFEYVTYGKIFKYADAGVDTNTNTVQVYISFGGLLM 124
Query: 122 MLKGDPSYVSHFELDQRLFLLMRK 145
L GD + ++D ++LL++K
Sbjct: 125 QLTGDVDKLQELQVDSNVYLLLKK 148
>gi|291230072|ref|XP_002734993.1| PREDICTED: RNA polymerase II, polypeptide H-like [Saccoglossus
kowalevskii]
Length = 151
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 100/146 (68%), Gaps = 4/146 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN++LYP+ + DKF + LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMELILDVNTQLYPVELADKFRLVLAST 63
Query: 65 LNLDGTPDTGYYTP--GARKTLADKYEYIMHGKLFKI-GDEGS-GKSLKAEIYVSYGGLL 120
L DG PD G YTP + AD++EY+M+GK++KI GDE + + K Y S+ LL
Sbjct: 64 LREDGYPDDGEYTPLSDGVPSRADQFEYVMYGKVYKIEGDETAMDAATKFTGYFSFHNLL 123
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
+ +GD + + E+D ++LLM+KL
Sbjct: 124 LXXQGDANNLHGMEVDSFVYLLMKKL 149
>gi|268574476|ref|XP_002642215.1| C. briggsae CBR-RPB-8 protein [Caenorhabditis briggsae]
gi|224493242|sp|A8XT81.1|RPAB3_CAEBR RecName: Full=Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3; Short=RNA polymerases I, II, and III
subunit ABC3; AltName: Full=RNA polymerase B subunit 8;
Short=RPB8
Length = 148
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DKF + LA T
Sbjct: 4 IIFDDMFSVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK-SLKAEIYVSYGGLLMML 123
L DG D G Y P A +YEY+M+GK++++ D+ SG + Y S+GGLLM L
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDSGTDGGQLAAYASFGGLLMRL 123
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
KG+ + FE+D L+LLM+K
Sbjct: 124 KGEAINLHGFEVDMNLYLLMKK 145
>gi|281201213|gb|EFA75427.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 140
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 100/142 (70%), Gaps = 5/142 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFED F V++IDPDGKKFD+VSR + ++ +M + +D+ + +YPM +KF + LA +
Sbjct: 4 ILFEDTFEVKEIDPDGKKFDRVSRFICYGESYEMDLHIDIATHIYPME-HEKFKLVLASS 62
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
L+LDGT D + + +LADK++Y+M GK+FK + S S K I+ S+GGLLM+L+
Sbjct: 63 LSLDGTMDISF--DSNKPSLADKFDYVMFGKIFKYQKDNS--SSKVSIFASFGGLLMLLQ 118
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GDP Y+ ELD R++LL++K+
Sbjct: 119 GDPRYLPGLELDARIYLLIKKI 140
>gi|301108471|ref|XP_002903317.1| DNA-directed RNA polymerase I, II, and III subunit rpabc3, putative
[Phytophthora infestans T30-4]
gi|262097689|gb|EEY55741.1| DNA-directed RNA polymerase I, II, and III subunit rpabc3, putative
[Phytophthora infestans T30-4]
Length = 142
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 93/140 (66%), Gaps = 3/140 (2%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V +++PDGKKFDKV+R+ + ++ + LD+NSE+Y +R +KFT+AL TL
Sbjct: 5 LFEDIFEVRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
+L+G PD G + + TL D+Y+Y M+GK+F+ EG IY S+GGLLM L+G
Sbjct: 65 DLEGKPDDGIFNQSGKPTLLDRYDYGMYGKVFQYDHEGGN---MVAIYASFGGLLMCLRG 121
Query: 126 DPSYVSHFELDQRLFLLMRK 145
+ ++ D R++ L+RK
Sbjct: 122 EQRHLHMIHNDTRIYCLLRK 141
>gi|308487522|ref|XP_003105956.1| CRE-RPB-8 protein [Caenorhabditis remanei]
gi|308254530|gb|EFO98482.1| CRE-RPB-8 protein [Caenorhabditis remanei]
Length = 148
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DKF + LA T
Sbjct: 4 IIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK-SLKAEIYVSYGGLLMML 123
L DG D G Y P A +YEY+M+GK++++ D+ +G K Y S+GGLLM L
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTGTDGGKLAAYASFGGLLMRL 123
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
KG+ + FE+D L+LLM+K
Sbjct: 124 KGEAINLHGFEVDMNLYLLMKK 145
>gi|348674017|gb|EGZ13836.1| hypothetical protein PHYSODRAFT_355025 [Phytophthora sojae]
Length = 142
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 93/140 (66%), Gaps = 3/140 (2%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V +++PDGKKFDKV+R+ + ++ + LD+NSE+Y +R +KFT+AL TL
Sbjct: 5 LFEDIFEVRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
+L+G PD G + + TL D+Y+Y M+GK+F+ EG IY S+GGLLM L+G
Sbjct: 65 DLEGKPDDGMFNQSGKPTLLDRYDYGMYGKVFQYDHEGGN---MVAIYASFGGLLMCLRG 121
Query: 126 DPSYVSHFELDQRLFLLMRK 145
+ ++ D R++ L+RK
Sbjct: 122 EQRHLHMIHNDTRIYCLLRK 141
>gi|357480469|ref|XP_003610520.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Medicago truncatula]
gi|355511575|gb|AES92717.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Medicago truncatula]
Length = 140
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 100/143 (69%), Gaps = 9/143 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+D F + ++P+G+K+DKVSRI A S+ M+MLLDVN+E+YPM +KF +AL+ +
Sbjct: 4 LLFDDFFKIVDVNPNGEKYDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLALSPS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKS-LKAEIYVSYGGLLMML 123
L L+ T ++ +K+EYIM+G+L+ I +G +S + E+Y S+GGL +ML
Sbjct: 64 LVLN--------TKDGPVSIQEKFEYIMYGRLYDIKADGLSRSPPEVEVYASFGGLQLML 115
Query: 124 KGDPSYVSHFELDQRLFLLMRKL 146
+GDPS+ F +DQ+LFLL+RKL
Sbjct: 116 RGDPSHCVKFAVDQKLFLLIRKL 138
>gi|17553210|ref|NP_498036.1| Protein RPB-8 [Caenorhabditis elegans]
gi|2833302|sp|Q19826.1|RPAB3_CAEEL RecName: Full=Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3; Short=RNA polymerases I, II, and III
subunit ABC3; AltName: Full=RNA polymerase B subunit 8;
Short=RPB8; AltName: Full=RPB17
gi|351058316|emb|CCD65759.1| Protein RPB-8 [Caenorhabditis elegans]
Length = 148
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DK + LA T
Sbjct: 4 IIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKVRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK-SLKAEIYVSYGGLLMML 123
L DG D G Y P A +YEY+M+GK++++ D+ +G K Y S+GGLLM L
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTGTDGGKLAAYASFGGLLMRL 123
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
KG+ + FE+D L+LLM+K
Sbjct: 124 KGEAINLHGFEVDMNLYLLMKK 145
>gi|256016577|emb|CAR63584.1| putative Rna polymerase ii (b) subunit protein 8 [Angiostrongylus
cantonensis]
Length = 148
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 95/143 (66%), Gaps = 1/143 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+F+D+F V+ IDPDGKKFD+ SR+ S++ M ++LDVN+++YP+ + DKF + + +
Sbjct: 4 VIFDDMFTVKNIDPDGKKFDRCSRLFCDSESFSMELILDVNTQIYPVNLNDKFRLMITTS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLMML 123
+ DG PD G + P A + ++EY+M G++++I GD+ + Y S+GGLLM L
Sbjct: 64 VRDDGMPDEGEHDPQANYSRVAQFEYVMFGRVYRIEGDDSGSDGTRIAAYASFGGLLMRL 123
Query: 124 KGDPSYVSHFELDQRLFLLMRKL 146
KG+ + F LD ++LL++K+
Sbjct: 124 KGEAFNLHGFGLDSNIYLLIKKV 146
>gi|325182335|emb|CCA16788.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 213
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 90/140 (64%), Gaps = 3/140 (2%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V +++P+GK FDKV+R+ + ++ + LD+NSE++ ++ DKFT AL TL
Sbjct: 76 LFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTL 135
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
+L+G PD G Y + TL D+Y+Y M+GK+F EG IY S+GGLLM L+G
Sbjct: 136 DLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEHEGGN---NVAIYASFGGLLMRLRG 192
Query: 126 DPSYVSHFELDQRLFLLMRK 145
+ ++ D R++ L+RK
Sbjct: 193 EQRHLHLVHNDSRVYCLLRK 212
>gi|325182336|emb|CCA16789.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 216
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 90/140 (64%), Gaps = 3/140 (2%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V +++P+GK FDKV+R+ + ++ + LD+NSE++ ++ DKFT AL TL
Sbjct: 79 LFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTL 138
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
+L+G PD G Y + TL D+Y+Y M+GK+F EG IY S+GGLLM L+G
Sbjct: 139 DLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEHEGGN---NVAIYASFGGLLMRLRG 195
Query: 126 DPSYVSHFELDQRLFLLMRK 145
+ ++ D R++ L+RK
Sbjct: 196 EQRHLHLVHNDSRVYCLLRK 215
>gi|325182334|emb|CCA16787.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 225
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 90/140 (64%), Gaps = 3/140 (2%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V +++P+GK FDKV+R+ + ++ + LD+NSE++ ++ DKFT AL TL
Sbjct: 88 LFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTL 147
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
+L+G PD G Y + TL D+Y+Y M+GK+F EG IY S+GGLLM L+G
Sbjct: 148 DLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEHEGGN---NVAIYASFGGLLMRLRG 204
Query: 126 DPSYVSHFELDQRLFLLMRK 145
+ ++ D R++ L+RK
Sbjct: 205 EQRHLHLVHNDSRVYCLLRK 224
>gi|341896175|gb|EGT52110.1| hypothetical protein CAEBREN_12228 [Caenorhabditis brenneri]
Length = 149
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+++F V+ +DPDGKKFD+VSR ++ M +++D+NS++YP++ DK + LA T
Sbjct: 4 IIFDEMFRVKSVDPDGKKFDRVSRYFCDAETYKMDLIIDINSQIYPLKQNDKVRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK-SLKAEIYVSYGGLLMML 123
L DG D G Y P A +YEY+M+GK++++ D+ +G K Y S+GGLLM L
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRMEDDDTGTDGGKLAAYASFGGLLMRL 123
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
KG+ + FE+D L+LLM+K
Sbjct: 124 KGEAINLHGFEVDMNLYLLMKK 145
>gi|109506290|ref|XP_226176.3| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Rattus norvegicus]
gi|109506911|ref|XP_001071711.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Rattus norvegicus]
Length = 151
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ +LFEDIF V+ IDP+GKKFD+VS++ S++ + ++LD+N ++YP+ +GDKF +
Sbjct: 1 MTAGILFEDIFDVKDIDPEGKKFDRVSQLHCESESFKVDLILDINIQIYPVDLGDKFRLV 60
Query: 61 LAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEGSGKSLKA-EIYVSYG 117
+A TL D T D G Y P R + AD++EY+M+GK+++I GDE S ++ VSYG
Sbjct: 61 IASTLYDDDTLDDGEYNPTDGRPSRADQFEYVMYGKVYRIEGDESSTEAATCLSACVSYG 120
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
GLLM +GD + + FE+D R++LL +KL
Sbjct: 121 GLLMRPQGDANNLHEFEVDSRVYLLKKKL 149
>gi|119598652|gb|EAW78246.1| polymerase (RNA) II (DNA directed) polypeptide H, isoform CRA_a
[Homo sapiens]
Length = 154
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 91/124 (73%), Gaps = 3/124 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKG 125
L+G
Sbjct: 124 RLQG 127
>gi|412992657|emb|CCO18637.1| predicted protein [Bathycoccus prasinos]
Length = 166
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQN-CDMYMLLDVNSELYPMRVGDKFTMA 60
S+ + +E +F +DPDGKKFD+VSR S D + LDVN ++YP+ VG KFT+
Sbjct: 15 SSSIKYEAMFETIDVDPDGKKFDRVSRFVCRSTPYGDSELTLDVNVDVYPIEVGTKFTLV 74
Query: 61 LAHTLNLDGTPD--TGYYTPGARKTLADKYEYIMHGKLFK---IGDEGSGKSLKAEIYVS 115
LA TLN DG+P+ T + ++TLAD+YEY+ HGK +K ++ S + K Y+S
Sbjct: 75 LASTLNTDGSPEDPTTFDQSRNKETLADEYEYVTHGKCYKKTEPNEDVSNGTEKTATYIS 134
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
+GGLL +K D +S ++D R++ LMRK+
Sbjct: 135 FGGLLACVKTDAKAMSEVDVDDRVYCLMRKI 165
>gi|393246580|gb|EJD54089.1| RNA polymerase I [Auricularia delicata TFB-10046 SS5]
Length = 145
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 99/148 (66%), Gaps = 6/148 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ ++F+D+F ++++D GKKFD+VSR+ AHS N DM++ LD NSE++P+ FTMA
Sbjct: 1 MNSSIVFDDLFKIQEVDQGGKKFDRVSRLAAHSSNLDMHLTLDYNSEIFPLHQDQSFTMA 60
Query: 61 LAHTLNLDGTPD-TGYYTPGARKT--LADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
LA +L G D + P R + L ++YEY+M+GK++K DEGSG+++ A Y S+G
Sbjct: 61 LATSLGAGGADDEQNSWRPDGRGSGGLDNEYEYVMYGKVYKF-DEGSGENVTA--YASFG 117
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GLLM L G ++ L ++LL+R+
Sbjct: 118 GLLMALSGSFRHMQGIVLGDPIYLLIRR 145
>gi|397580313|gb|EJK51535.1| hypothetical protein THAOC_29280 [Thalassiosira oceanica]
Length = 151
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 94/149 (63%), Gaps = 8/149 (5%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+ + LFEDIF + ++P+GKKF++V+R+ A D +LLD N ++Y + +K T+ L
Sbjct: 5 ARVTLFEDIFEINALNPEGKKFERVNRLSAKGTTFDCDLLLDYNCQIYSLHEEEKMTLVL 64
Query: 62 AHTLNLDGTPDT-GYYTPGA----RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
A TLNLDG+PD Y P A TLAD YEY+MHG++F + + G + I +S+
Sbjct: 65 ASTLNLDGSPDDHTSYNPAASFKNEPTLADNYEYVMHGRVFDVSYKKDGVVV---IAISF 121
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLL L GD ++S+ D RLF+L++K
Sbjct: 122 GGLLCRLTGDQRHLSNILPDMRLFILIKK 150
>gi|358059381|dbj|GAA94787.1| hypothetical protein E5Q_01441 [Mixia osmundae IAM 14324]
Length = 146
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 100/143 (69%), Gaps = 5/143 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+D+F + ++D G KFD+VSR+EAHS N DM + LD ++EL+P++ +KF++ALA
Sbjct: 6 ILFDDLFTIRELDKGGPKFDRVSRLEAHSDNHDMNVTLDFHNELFPIQDKEKFSLALASD 65
Query: 65 LNLD--GTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMM 122
LN+D G D + TLAD++EY+M+GK++K DEG+ + +K +Y+S+GGLLM
Sbjct: 66 LNVDPTGQKDALDLSRLPSGTLADEWEYVMYGKVYKF-DEGTQEKVK--VYISFGGLLMC 122
Query: 123 LKGDPSYVSHFELDQRLFLLMRK 145
L+G+ ++S + ++ LMRK
Sbjct: 123 LEGNYRHISQITVGSEIYSLMRK 145
>gi|326435064|gb|EGD80634.1| RNA polymerase subunit [Salpingoeca sp. ATCC 50818]
Length = 140
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 93/142 (65%), Gaps = 6/142 (4%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED+F V+ DP G+KF++VSRI + ++LD+N++LYPM + ++F++ LA +L
Sbjct: 3 LFEDVFTVKAKDPKGRKFERVSRIVCEAFMTGFELILDLNTQLYPMELDEQFSLCLARSL 62
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
+ + P +G Y +LAD ++Y+MHG ++++ +E G + +Y SYGG+LM LKG
Sbjct: 63 DDEAAPSSGTYVQNRESSLADSFDYVMHGTIYRV-EEKEG---QVAVYASYGGMLMRLKG 118
Query: 126 DPSYVSH--FELDQRLFLLMRK 145
+ S + ELD L+LL+RK
Sbjct: 119 NRSALMKPGLELDSSLYLLIRK 140
>gi|224013028|ref|XP_002295166.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220969128|gb|EED87470.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 153
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 92/149 (61%), Gaps = 8/149 (5%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+ + LFEDIF + ++P+GKKFD V+R+ A + +LLD N ++Y + G+K T+ L
Sbjct: 7 ARVTLFEDIFEITHLNPEGKKFDLVNRLSATGTTFECDLLLDYNCQIYSLLEGEKMTLVL 66
Query: 62 AHTLNLDGTPDT-GYYTPGARK----TLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
A TLNLDGTPD Y P TLAD YEY+MHG++F + + G + I +S+
Sbjct: 67 ASTLNLDGTPDDHTSYNPATSHNNELTLADNYEYVMHGRVFDVSYKKDGVVV---IAISF 123
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLL L GD ++S D RL++L++K
Sbjct: 124 GGLLCRLTGDQRHLSSVLPDMRLYVLIKK 152
>gi|328862238|gb|EGG11339.1| hypothetical protein MELLADRAFT_33205 [Melampsora larici-populina
98AG31]
Length = 142
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 8/145 (5%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+D+F + +D +GKKFD+VSR++A S N M + LD N ELYP+++GD F +AL+ +L
Sbjct: 1 LFDDLFTLTDLDKEGKKFDRVSRLKAISSNHSMNLTLDFNIELYPLKIGDCFALALSSSL 60
Query: 66 NLDGTPDTG-----YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
+G D G + + LAD+Y+Y+M+GKL+K +G S Y+S+GGLL
Sbjct: 61 TPEGEKDGGAEIQSWRLEEGKGGLADEYDYVMYGKLYKF---DTGASDTVTCYISFGGLL 117
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRK 145
M L GD ++ + Q +FLLMR+
Sbjct: 118 MALSGDYRHLDQLTVGQMVFLLMRR 142
>gi|300122330|emb|CBK22902.2| unnamed protein product [Blastocystis hominis]
Length = 146
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 92/141 (65%), Gaps = 4/141 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFE+IF V ++PDGK F+KV+R A S M ML+D+N+++YP++ D+F++ LA
Sbjct: 6 ILFEEIFEVRSVNPDGKAFEKVTRFAATSVTYGMDMLIDINTDIYPLKGTDRFSLVLASK 65
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMML 123
L D PD G Y +++ TL D Y+Y MHGK+FK + GK L IYVSYGGLLM L
Sbjct: 66 LYKDNRPDPGVYMDYSKEHTLLDDYDYCMHGKVFKYQYKDDGKVL---IYVSYGGLLMSL 122
Query: 124 KGDPSYVSHFELDQRLFLLMR 144
+G+ ++ + R++ L+R
Sbjct: 123 EGELKHIEKVKYGDRIYCLIR 143
>gi|395334230|gb|EJF66606.1| hypothetical protein DICSQDRAFT_123228 [Dichomitus squalens
LYAD-421 SS1]
Length = 674
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 95/153 (62%), Gaps = 15/153 (9%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N+EL+P++ G +ALA +
Sbjct: 525 ILFDDIFSINDIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNTELFPIQSGQSIALALASS 584
Query: 65 LNL----------DGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEI 112
L+ D D + P A R+ L D YEY+M+GK+++ D GSG+ + A
Sbjct: 585 LSRNPQGAAGTTEDEDKDRDVWRPDAKGRRGLDDDYEYVMYGKVYRF-DSGSGEVVTA-- 641
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y S+GGLLM L G +++ L +F+L+R+
Sbjct: 642 YASFGGLLMSLTGSFRHLTSIVLGDPVFILLRR 674
>gi|328869385|gb|EGG17763.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 164
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 94/139 (67%), Gaps = 6/139 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MSNI LFED F V+ IDPDGKKFD+VSR S++ +M + LD+ + +Y + +KF +
Sbjct: 1 MSNI-LFEDNFEVKDIDPDGKKFDRVSRYVCQSESYEMDLHLDLATHIYQLG-HEKFKLV 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
LA +L+LDG+ + + + +LADKY+Y+M+GK+FK E S K I+ S+GGLL
Sbjct: 59 LASSLSLDGSLEQVAFDSN-KPSLADKYDYVMYGKIFKYQKEVSS---KVSIFASFGGLL 114
Query: 121 MMLKGDPSYVSHFELDQRL 139
M+L+GDP Y+ ELD RL
Sbjct: 115 MLLQGDPRYLPGLELDSRL 133
>gi|392597250|gb|EIW86572.1| RNA polymerase I [Coniophora puteana RWD-64-598 SS2]
Length = 157
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 98/156 (62%), Gaps = 16/156 (10%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNIV F+DIF + ID +GKKFD+VSR+ AHS+N DM M LD N+ELYP+ G F MAL
Sbjct: 6 SNIV-FDDIFTINSIDKEGKKFDRVSRLFAHSKNYDMDMTLDYNTELYPLANGQSFAMAL 64
Query: 62 AHTLNLDGTP----------DTGYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLK 109
A +L+ +G P D + P R+ L + Y+Y+M+GK++K D G+ + +
Sbjct: 65 ASSLSREGGPANADGEENEEDRDAWRPDGKGRRGLEEDYDYVMYGKVYKF-DGGTSEIVT 123
Query: 110 AEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
A Y S+GGLL+ L G ++++ L +++L+RK
Sbjct: 124 A--YASFGGLLLSLTGSSRHMTNIVLGDPVYILLRK 157
>gi|443923976|gb|ELU43060.1| RNA polymerase rpb8 domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 455
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 96/151 (63%), Gaps = 10/151 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
SNI LF+D+F + ID DGKK+D+VSR+ A S N M++ LD N+E+YP++ G+KFT+
Sbjct: 5 QSNI-LFDDLFTITDIDMDGKKYDRVSRLVATSANLGMHLTLDFNTEIYPLQAGEKFTLV 63
Query: 61 LAHTLNLDGTPDTG----YYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL G + + P + + L + YEY+M+G ++K DEG G ++ A Y+
Sbjct: 64 LASTLARGGAAEATEGKDVWRPDGKGQQGLEEDYEYVMYGYVYKY-DEGEGDNVTA--YI 120
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
SYGGLLM L G ++ + RL+LL+RK
Sbjct: 121 SYGGLLMSLTGSHRHMQGIVVGSRLYLLIRK 151
>gi|393218489|gb|EJD03977.1| RNA polymerase I [Fomitiporia mediterranea MF3/22]
Length = 160
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 100/159 (62%), Gaps = 19/159 (11%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNIV F+D+F + ID DGKKFD+VSR+ AHS N DM + LD N+ELYP++ G+ F++ L
Sbjct: 6 SNIV-FDDLFTINAIDKDGKKFDRVSRLFAHSSNYDMDLTLDYNTELYPLKSGESFSLVL 64
Query: 62 AHTL----------NLDGTP---DTGYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGK 106
A +L DGT DT + P R+ L + YEY+M+G+++K D G+ +
Sbjct: 65 ASSLVRAVEGGAINGTDGTEEEKDTHIWRPDGKGRRGLEEDYEYVMYGRVYKF-DGGTAE 123
Query: 107 SLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+ A Y+S+GGLLM L G +++ L + ++LLMR+
Sbjct: 124 IVTA--YLSFGGLLMSLTGSYRHMTGIVLGEPVYLLMRR 160
>gi|449550819|gb|EMD41783.1| hypothetical protein CERSUDRAFT_110350 [Ceriporiopsis subvermispora
B]
Length = 155
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ V+F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N ELYP+ V D FT+AL
Sbjct: 5 SSNVVFDDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNVELYPLHVDDSFTLAL 64
Query: 62 AHTLNLDGTPDTG---------YYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
A +L G P T + P R+ L + YEY+M+GK+++ D GS + + A
Sbjct: 65 ASSLAR-GPPGTADGEDDKDRDVWRPDGKGRRGLEEDYEYVMYGKVYRF-DGGSAEIVTA 122
Query: 111 EIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y S+GGLLM L G +++ L ++LLMRK
Sbjct: 123 --YASFGGLLMSLTGSFRHMTSIVLGDPVYLLMRK 155
>gi|395536685|ref|XP_003770342.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Sarcophilus harrisii]
Length = 180
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 91/128 (71%), Gaps = 3/128 (2%)
Query: 22 KFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-A 80
+ ++VSR+ S++ M ++LDVN ++YP+ +GDKF + +A TL DGT D G Y P
Sbjct: 51 RQNRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDD 110
Query: 81 RKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLMMLKGDPSYVSHFELDQR 138
R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM L+GD + + FE+D R
Sbjct: 111 RPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSR 170
Query: 139 LFLLMRKL 146
++LLM+KL
Sbjct: 171 VYLLMKKL 178
>gi|167537741|ref|XP_001750538.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770959|gb|EDQ84634.1| predicted protein [Monosiga brevicollis MX1]
Length = 137
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 83/131 (63%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ VLFED+F V DP GK+FD+VSR+ + ++ ++LD+N++LYP+ + D+FT+
Sbjct: 1 MASTVLFEDVFTVRDKDPHGKRFDRVSRVICEGMSFNIELILDLNTQLYPVDLNDRFTLC 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
LA TL++D PD GYY + AD ++Y+MHG +++I D +G+ L E S +
Sbjct: 61 LASTLSMDDEPDDGYYNQNRNASRADNFDYVMHGTIYRIEDTDNGQQLYVESSASVSICM 120
Query: 121 MMLKGDPSYVS 131
+ P +++
Sbjct: 121 LPPCLAPCFLA 131
>gi|405969389|gb|EKC34363.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Crassostrea gigas]
Length = 111
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN+++YP+ +GDKF M LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLFCESESFKMDLILDVNTQIYPVDLGDKFRMVLAKT 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKIGDEGSG 105
L DGTPD G Y P + AD +EY+MHGK+++I + +G
Sbjct: 64 LREDGTPDDGEYNPTDTGPSRADSFEYVMHGKVYRIEGDDTG 105
>gi|339240367|ref|XP_003376109.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Trichinella spiralis]
gi|316975194|gb|EFV58646.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Trichinella spiralis]
Length = 153
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 92/148 (62%), Gaps = 6/148 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+D+FV++ IDP+GKKFD VSR+ S+ M ++LD++S LYP+ +GDKF + L T
Sbjct: 4 ILFDDVFVIKDIDPEGKKFDSVSRLFCESEAYKMDLILDIHSHLYPVELGDKFRLVLTST 63
Query: 65 LNLD---GTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG---KSLKAEIYVSYGG 118
L D GT + Y + + D ++Y+MHGK+++I D G S Y S+GG
Sbjct: 64 LRDDGGYGTTEEEEYDVHFKSSRLDSFDYVMHGKIYRIDDAGGSGGIDSAHVATYASFGG 123
Query: 119 LLMMLKGDPSYVSHFELDQRLFLLMRKL 146
LLM L+GD + F+ ++LL++++
Sbjct: 124 LLMRLEGDVKNMISFDTYMNIYLLLKRV 151
>gi|403270068|ref|XP_003927020.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 2 [Saimiri boliviensis boliviensis]
Length = 168
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 85/142 (59%), Gaps = 25/142 (17%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 50 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 109
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
L DGT D G Y P + + YVSYGGLLM L+
Sbjct: 110 LYEDGTLDDGEYNPTDDRP-------------------------SSSAYVSYGGLLMRLQ 144
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GD + + FE+D R++LLM+KL
Sbjct: 145 GDANNLHGFEVDSRVYLLMKKL 166
>gi|449277658|gb|EMC85752.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3, partial
[Columba livia]
Length = 126
Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 88/124 (70%), Gaps = 3/124 (2%)
Query: 26 VSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTL 84
VSR+ S++ M ++LDVN ++YP+ +GDKF + +A TL DGT D G Y P R +
Sbjct: 1 VSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSR 60
Query: 85 ADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLL 142
AD++EY+M+GK+++I GDE S + + + YVSYGGLLM L+GD + + FE+D R++LL
Sbjct: 61 ADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLL 120
Query: 143 MRKL 146
M+KL
Sbjct: 121 MKKL 124
>gi|332818614|ref|XP_526411.3| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Pan troglodytes]
Length = 168
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 85/142 (59%), Gaps = 25/142 (17%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 50 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 109
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
L DGT D G Y P + + YVSYGGLLM L+
Sbjct: 110 LYEDGTLDDGEYNPTDDRP-------------------------SSSAYVSYGGLLMRLQ 144
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
GD + + FE+D R++LLM+KL
Sbjct: 145 GDANNLHGFEVDSRVYLLMKKL 166
>gi|392571590|gb|EIW64762.1| RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 156
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNIV F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P++ G F +AL
Sbjct: 6 SNIV-FDDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNIELFPLQSGQSFALAL 64
Query: 62 AHTLNL---------DGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
A +L+ D D + P A RK L D YEY+M+GK+++ D GS + + A
Sbjct: 65 ASSLSRAPQGPAGAEDEDKDRDVWRPDAKGRKGLDDDYEYVMYGKVYRF-DGGSAEIVTA 123
Query: 111 EIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y S+GGLLM + G +++ L +F+L+R+
Sbjct: 124 --YASFGGLLMSITGSFRHMTSIVLGDPVFILLRR 156
>gi|351709615|gb|EHB12534.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Heterocephalus glaber]
Length = 138
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAEIYVSYGGLLMM 122
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ + GLL
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLAHTHRTGLLFQ 123
Query: 123 L 123
L
Sbjct: 124 L 124
>gi|380024944|ref|XP_003696246.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Apis florea]
Length = 173
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 86/127 (67%), Gaps = 4/127 (3%)
Query: 24 DKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARK- 82
D +SR+ S++ M ++LD+NS LYPM +GDKF + LA TL DG PD G + ++
Sbjct: 45 DYLSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDGYPDGGEWNATEQEG 104
Query: 83 -TLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRL 139
+ AD +EY+M G +++I GDE S + S + YVS+GGLLM L+GD + + FE+DQ +
Sbjct: 105 GSRADSFEYVMSGMVYRIEGDEASNEPSSRLSAYVSFGGLLMRLQGDANNLHGFEIDQHM 164
Query: 140 FLLMRKL 146
+LLM+KL
Sbjct: 165 YLLMKKL 171
>gi|378726456|gb|EHY52915.1| DNA-directed RNA polymerase II subunit H [Exophiala dermatitidis
NIH/UT8656]
Length = 143
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 104/149 (69%), Gaps = 10/149 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MS +LFE+ F + D + K+D+VSRI+A+S+ +L LDVN+ELYP+ V D+ T+
Sbjct: 1 MSENILFENSFKI--TDINSAKYDRVSRIKAYSEGGQEVLLTLDVNTELYPLNVDDRMTV 58
Query: 60 ALAHTLNLDGTPD--TGYYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
ALA +LNLDG+ D G+ G +TLAD+++Y+ HGK+++ +EGSG+++K +YVS+
Sbjct: 59 ALALSLNLDGSKDDGKGWREVGRGEQTLADEFDYVCHGKIYRF-EEGSGENIK--VYVSF 115
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLL+ + G + ++ +D ++LLM+K
Sbjct: 116 GGLLLYMDGPYALLNALRIDY-VYLLMKK 143
>gi|169844296|ref|XP_001828869.1| RNA polymerase I [Coprinopsis cinerea okayama7#130]
gi|116509981|gb|EAU92876.1| RNA polymerase I [Coprinopsis cinerea okayama7#130]
Length = 153
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 11/152 (7%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ +LF+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P++ G F +AL
Sbjct: 5 SSNILFDDIFTISDIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNVELFPLKEGQSFALAL 64
Query: 62 AHTLNLDGT-------PDTGYYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIY 113
A +L G + + P + R+ L D YEY+M+GK++K D S + + A Y
Sbjct: 65 ASSLTKGGAKGDDEEDKEHDVWRPDSKRRGLDDDYEYVMYGKVYKF-DGASSEIVTA--Y 121
Query: 114 VSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLLM L G +++ L +F+L+R+
Sbjct: 122 ASFGGLLMSLTGSFRHMTSIVLGDPVFILLRR 153
>gi|392578869|gb|EIW71996.1| hypothetical protein TREMEDRAFT_24691 [Tremella mesenterica DSM
1558]
Length = 156
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 31/164 (18%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+N +LFED F+V+++D GKKFD+VSRIEA SQN M ++LD+ +ELYP+ + FT+AL
Sbjct: 4 TNNILFEDRFIVDEVDKGGKKFDRVSRIEATSQNSRMSLVLDIANELYPLNPRETFTLAL 63
Query: 62 AHTL-----NLDGTPDTGYYTP---------------GARKTLADKYEYIMHGKLFKIGD 101
A +L +DG D G + LAD YEY+M+GK+ I
Sbjct: 64 ARSLLSEGEQIDGDADLDGEENGGGGGGKKVKRELWRGGDQGLADDYEYVMYGKVTGI-- 121
Query: 102 EGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y+S+GGLLM L+G +++ + Q ++LL+RK
Sbjct: 122 ---------TAYISFGGLLMALRGPYRHLTGITVGQNVYLLIRK 156
>gi|380024948|ref|XP_003696248.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Apis florea]
Length = 128
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 85/125 (68%), Gaps = 4/125 (3%)
Query: 26 VSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARK--T 83
+SR+ S++ M ++LD+NS LYPM +GDKF + LA TL DG PD G + ++ +
Sbjct: 2 LSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDGYPDGGEWNATEQEGGS 61
Query: 84 LADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFL 141
AD +EY+M G +++I GDE S + S + YVS+GGLLM L+GD + + FE+DQ ++L
Sbjct: 62 RADSFEYVMSGMVYRIEGDEASNEPSSRLSAYVSFGGLLMRLQGDANNLHGFEIDQHMYL 121
Query: 142 LMRKL 146
LM+KL
Sbjct: 122 LMKKL 126
>gi|326504196|dbj|BAJ90930.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 81
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 64/80 (80%), Gaps = 3/80 (3%)
Query: 70 TPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK---SLKAEIYVSYGGLLMMLKGD 126
TPDTGYYT RKTLADKY+Y+MHGKL+KI ++G K + K EIY S+GGLLM+LKGD
Sbjct: 2 TPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDGGSKDKTAPKVEIYASFGGLLMLLKGD 61
Query: 127 PSYVSHFELDQRLFLLMRKL 146
S ++ ELDQRLFLL+RK+
Sbjct: 62 ASSAANLELDQRLFLLIRKV 81
>gi|390604109|gb|EIN13500.1| RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 154
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 93/150 (62%), Gaps = 12/150 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+DIF V ID +GKKFD+VSR+ AHS+N DM + LD N+EL+P++ F +AL+ +
Sbjct: 8 IVFDDIFTVNAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNTELFPLKNEQSFALALSSS 67
Query: 65 LNLDGTP-------DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
L+ G P + + P + + L + Y+Y+M+GK++K SG S + Y S
Sbjct: 68 LSRGGAPGGDDEAEEKNVWRPDGKGQRGLEEDYDYVMYGKVYKF---DSGTSEISTAYAS 124
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLLM L G +++ L + +++L+RK
Sbjct: 125 FGGLLMALTGSFRHMASIVLGEPIYILLRK 154
>gi|290981425|ref|XP_002673431.1| predicted protein [Naegleria gruberi]
gi|284087014|gb|EFC40687.1| predicted protein [Naegleria gruberi]
Length = 156
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 97/152 (63%), Gaps = 13/152 (8%)
Query: 4 IVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
+VL + F V+ IDP+GKKFDKVSR+ S++ +M +++D+N++++P+ + DK T++LA
Sbjct: 7 VVLEDKFFEVKNIDPEGKKFDKVSRLYCESED-EMELIIDINTDIFPVEINDKLTISLAT 65
Query: 64 TLNLD--------GTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIY 113
+L + T DT T G + +L D Y+Y+M+G+++K E + + IY
Sbjct: 66 SLEIKPSKQVDSKKTKDTYDPTLGTDDKPSLMDNYDYVMYGRVYKYQPEKNYSVV--SIY 123
Query: 114 VSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
VS+GGLLM LKG+ + H E D L+LLMRK
Sbjct: 124 VSFGGLLMKLKGEARDIQHIEPDTHLYLLMRK 155
>gi|297606426|ref|NP_001058461.2| Os06g0697400 [Oryza sativa Japonica Group]
gi|255677357|dbj|BAF20375.2| Os06g0697400 [Oryza sativa Japonica Group]
Length = 82
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLF 97
MYM LDV +E+YPMR GD+FTM LA TLNLDGTPDTG+YT RKTLADK++Y+MHGKL+
Sbjct: 1 MYMQLDVATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLY 60
Query: 98 KIG-DEGSGKSLK 109
KI D SG++ K
Sbjct: 61 KISEDSSSGQATK 73
>gi|149019876|gb|EDL78024.1| rCG36803, isoform CRA_b [Rattus norvegicus]
Length = 112
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 78/105 (74%), Gaps = 2/105 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS 107
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEA 108
>gi|302698417|ref|XP_003038887.1| hypothetical protein SCHCODRAFT_64989 [Schizophyllum commune H4-8]
gi|300112584|gb|EFJ03985.1| hypothetical protein SCHCODRAFT_64989 [Schizophyllum commune H4-8]
Length = 156
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 97/155 (62%), Gaps = 14/155 (9%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F+DIF VE ID GKKFD+VSR+ + S+N +M + LD N EL+P+ GD +AL
Sbjct: 5 SSNIIFDDIFAVEDIDRAGKKFDRVSRLWSKSKNYEMELELDYNIELFPLSKGDHVAVAL 64
Query: 62 AHTLNLD--GTPDTG-------YYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
A +L+ + G G + PG A L + Y+Y+M GK++K DE +G+ ++
Sbjct: 65 ASSLSREPVGVAAEGEEADNKNTWRPGISANPGLEEDYDYVMFGKIYKY-DESTGE--RS 121
Query: 111 EIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+Y S+GGLLM L G+ ++ + L + +++L+RK
Sbjct: 122 TVYASFGGLLMALTGNNRHLQNLTLGESVYILLRK 156
>gi|170084077|ref|XP_001873262.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650814|gb|EDR15054.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 162
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 23/162 (14%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+NIV F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P+ F +AL
Sbjct: 6 ANIV-FDDIFTISDIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNVELFPLEKDQSFALAL 64
Query: 62 AHTLNLDGTPDTGYYTPGA------------------RKTLADKYEYIMHGKLFKIGDEG 103
A +L G P + T GA R+ L D YEY+M+GK++K D G
Sbjct: 65 ASSLARGGAPGSS-GTDGAQEEADDKERDVWRPDGKGRRGLEDDYEYVMYGKVYKF-DGG 122
Query: 104 SGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+ + + A Y S+GGLLM L G +++ L ++LLMR+
Sbjct: 123 TSEIVTA--YASFGGLLMSLTGSFRHMTSIVLGDPVYLLMRR 162
>gi|425771918|gb|EKV10347.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Penicillium digitatum Pd1]
gi|425777313|gb|EKV15494.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Penicillium digitatum PHI26]
Length = 143
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 95/148 (64%), Gaps = 8/148 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSR+ +S + + LDVN+ELYP VG+ ++A
Sbjct: 1 MSDPLLFEDTFTITSIN--AQKYDRVSRLTCNSNDASLTFTLDVNTELYPCAVGESLSLA 58
Query: 61 LAHTLNLDGTPDT---GYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
LA TL+LDG DT +TLAD Y+Y+ HGK+++ +EG+ K A ++VS+G
Sbjct: 59 LASTLSLDGKEDTRASWREVSMGDQTLADDYDYVCHGKVYRF-EEGATKDTMA-VFVSFG 116
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GLL+ L+G ++ +D ++LL++K
Sbjct: 117 GLLLYLEGPYKKLAPLRIDH-VYLLLKK 143
>gi|409041179|gb|EKM50665.1| hypothetical protein PHACADRAFT_152837 [Phanerochaete carnosa
HHB-10118-sp]
Length = 153
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 97/153 (63%), Gaps = 14/153 (9%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNIV F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P++ G + +AL
Sbjct: 6 SNIV-FDDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNIELFPLQQGQQVALAL 64
Query: 62 AHTLNLDGTP-------DTGYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEI 112
A +L+ G P D + P R+ L + YEY+M+GK+++ D G+ + + A
Sbjct: 65 ATSLS-RGPPADGEEEKDVEVWRPDGKGRRGLEEDYEYVMYGKVYRF-DGGTAEIVTA-- 120
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y S+GGLLM L G ++++ L +++L+R+
Sbjct: 121 YASFGGLLMSLTGSFRHMTNIVLGNPVYVLLRR 153
>gi|346474110|gb|AEO36899.1| hypothetical protein [Amblyomma maculatum]
Length = 113
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 80/111 (72%), Gaps = 2/111 (1%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN+ LYP+ +GDKF + +A TL DG PD G Y P + AD +EY+M+GK+
Sbjct: 1 MDLILDVNTMLYPVDLGDKFRLVIATTLREDGYPDDGEYNPADTGPSRADSFEYVMYGKI 60
Query: 97 FKI-GDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
++I GD+ +G++ + YVS+GGLLM L+GDP+ + FE+D ++LLM+K+
Sbjct: 61 YRIEGDDITGETTRLASYVSFGGLLMRLQGDPNNLHGFEVDNHVYLLMKKI 111
>gi|406861892|gb|EKD14944.1| RNA polymerase Rpb8 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 149
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 89/147 (60%), Gaps = 12/147 (8%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED F ++ D K+D+V+RI S + D +M LD+N+ELYP + D + +A TL
Sbjct: 8 LFEDTFHIQTFDQ--SKYDRVARIGGKSHDDDTFMTLDINTELYPCAIDDNLQVVIATTL 65
Query: 66 NLDGTPDTG-------YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGG 118
LDG+ D G + PG TLAD ++Y+ HGK++K D G ++KA Y+S+GG
Sbjct: 66 ALDGSKDGGKGWRDVSQHGPGGEPTLADMFDYVCHGKVYKFEDAEDGATIKA--YISFGG 123
Query: 119 LLMMLKGDPSYVSHFELDQRLFLLMRK 145
LLM L+G ++ +D ++LL++K
Sbjct: 124 LLMALEGPYKKLTSLRVD-YVYLLVKK 149
>gi|449019984|dbj|BAM83386.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 156
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 18/156 (11%)
Query: 6 LFEDIFVVEKID-----PDG--------KKFDKVSRIEAHSQNCDMYMLLDVNSELYPMR 52
+ ED F+ +++D P KKFD+VSR+ A S M + LDV+S+L+P+R
Sbjct: 4 ILEDTFICQEVDMVYKDPRNPALGKVREKKFDRVSRLVAESLQQRMRLTLDVHSQLFPVR 63
Query: 53 VGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEI 112
GD+F + L ++ LDG P G Y T+ ++Y+Y+M GK+F EG+ +S +
Sbjct: 64 AGDRFLLVLMSSVRLDGAPCDGTYDQSGAPTVINRYDYVMCGKVFHQESEGAHQS---AV 120
Query: 113 YVSYGGLLMMLKGDPSYV--SHFELDQRLFLLMRKL 146
+S+GGLLM L+G + + + LD R++LL+R++
Sbjct: 121 CISFGGLLMRLQGSRNVIDLADLRLDNRVYLLLRRV 156
>gi|444727186|gb|ELW67691.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Tupaia
chinensis]
Length = 122
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 83/118 (70%), Gaps = 3/118 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GD+F + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDEFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGL 119
L DG+ D G YTP R + A+++ Y+M+ K+++I GDE S + + + YVSYG
Sbjct: 64 LYEDGSLDDGEYTPTDDRPSRAEQFAYVMYRKVYRIEGDETSTEAATRLSAYVSYGAC 121
>gi|409083391|gb|EKM83748.1| hypothetical protein AGABI1DRAFT_117227 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426201562|gb|EKV51485.1| hypothetical protein AGABI2DRAFT_197624 [Agaricus bisporus var.
bisporus H97]
Length = 158
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 16/157 (10%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P+ + F +AL
Sbjct: 5 SSSIIFDDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNIELFPLENNESFALAL 64
Query: 62 AHTLNLDGTPDTG-----------YYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
A +L P G + P R L D YEY+M+GK+++ D G+ + +
Sbjct: 65 ASSLARGPQPVAGEGDDEADKDRHIWRPDGKGRHGLEDDYEYVMYGKVYRF-DSGTAEIV 123
Query: 109 KAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
A Y+S+GGLLM L G +++ L ++LL+RK
Sbjct: 124 TA--YLSFGGLLMSLTGSFRHMTGIVLGDPIYLLIRK 158
>gi|403340621|gb|EJY69601.1| DNA-directed RNA polymerase II, 16.5 kDa polypeptide [Oxytricha
trifallax]
Length = 151
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 90/155 (58%), Gaps = 13/155 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M + +D V I+ DGK F+KVSRIEA S+ + + LDVN+++YPM + M
Sbjct: 1 MDRAKIIDDTIQVININRDGKFFEKVSRIEAKSEVNKLEVQLDVNTDIYPMEKDAYYAMC 60
Query: 61 LAHTLNLDGTPDTGYYT---------PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAE 111
+A ++N DG+ + + P + +L D+YEY+MHGK+FK + K
Sbjct: 61 IASSINTDGSEEFDIFRYQSEGSVAGPDGQGSLLDQYEYVMHGKVFKYTIDND----KIS 116
Query: 112 IYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
+++SYGGLLM L G + + E+D R++LLM+K+
Sbjct: 117 VFISYGGLLMSLTGGLKELKNLEIDSRVYLLMKKI 151
>gi|145228699|ref|XP_001388658.1| UDP-glucose 4-epimerase Gal10 [Aspergillus niger CBS 513.88]
gi|134054750|emb|CAK43590.1| unnamed protein product [Aspergillus niger]
gi|350637886|gb|EHA26242.1| hypothetical protein ASPNIDRAFT_196819 [Aspergillus niger ATCC
1015]
Length = 144
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 98/151 (64%), Gaps = 13/151 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+VSR+ +S + + LDVNSELYP VG+ MA
Sbjct: 1 MSDPVLFEDTFTITTINS--QKYDRVSRLSCNSTDTLSHFTLDVNSELYPCVVGESVNMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL+LDG D+G + G R +TLA+ Y+Y+ HGK+++ +EGS + A +++
Sbjct: 59 LASTLSLDGKDDSG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGSSQGNMA-VFI 114
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L+G ++ +D ++LL++K
Sbjct: 115 SFGGLLLYLEGPYKKLAPLRIDY-VYLLLKK 144
>gi|255953797|ref|XP_002567651.1| Pc21g06060 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589362|emb|CAP95503.1| Pc21g06060 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 143
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 95/148 (64%), Gaps = 8/148 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + ++ +K+D+VSR+ +S + + LDVN+ELYP VG+ ++A
Sbjct: 1 MSDPLLFEDTFTITSVN--AQKYDRVSRLTCNSNDASLTFTLDVNTELYPCAVGESLSLA 58
Query: 61 LAHTLNLDGTPDT---GYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
LA TL+LDG DT ++LAD Y+Y+ HGK+++ +EG+ K A ++VS+G
Sbjct: 59 LASTLSLDGKEDTRASWREVSMGEQSLADDYDYVCHGKVYRF-EEGATKDTMA-VFVSFG 116
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GLL+ L+G ++ +D ++LL++K
Sbjct: 117 GLLLYLEGPYKKLAPLRIDH-VYLLLKK 143
>gi|342321291|gb|EGU13225.1| RNA polymerase I [Rhodotorula glutinis ATCC 204091]
Length = 147
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 92/147 (62%), Gaps = 14/147 (9%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F D+F V +D KVSRI A SQN DM M LD+N++L +R +F++AL
Sbjct: 7 SSAIIFTDVFNVSDVD-------KVSRIAAKSQNHDMRMTLDINTDLIDLRQESEFSLAL 59
Query: 62 AHTLNLDGTPDTGYYTPGARKT----LADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
A TL+ DG T G R LAD ++Y+M+GK++K DEGSG+ + A YVS+G
Sbjct: 60 ASTLHPDGVAKDAGATGGWRADIEGGLADDWDYVMYGKVYKY-DEGSGEEVTA--YVSFG 116
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMR 144
GLLM L G ++++ + + ++LL+R
Sbjct: 117 GLLMALTGVYRHMANLTVGEYVYLLLR 143
>gi|350536423|ref|NP_001232245.1| putative RNA polymerase II polypeptide H [Taeniopygia guttata]
gi|426343150|ref|XP_004038180.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 1 [Gorilla gorilla gorilla]
gi|197127218|gb|ACH43716.1| putative RNA polymerase II polypeptide H [Taeniopygia guttata]
Length = 114
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 81/112 (72%), Gaps = 3/112 (2%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN ++YP+ +GDKF + +A TL DGT D G Y P R + AD++EY+M+GK+
Sbjct: 1 MDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKV 60
Query: 97 FKI-GDEGSGK-SLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
++I GDE S + + + YVSYGGLLM L+GD + + FE+D R++LLM+KL
Sbjct: 61 YRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKL 112
>gi|427777847|gb|JAA54375.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 113
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 79/111 (71%), Gaps = 2/111 (1%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN+ LYP+ +GDKF + +A TL DG PD G Y P + AD +E +M+GK+
Sbjct: 1 MDLILDVNTMLYPVDLGDKFRLVIATTLREDGYPDDGEYNPADTGPSRADSFECVMYGKI 60
Query: 97 FKI-GDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
++I GD+ +G++ + YVS+GGLLM L+GDP+ + FE+D ++LLM+K+
Sbjct: 61 YRIXGDDITGETTRLAAYVSFGGLLMRLQGDPNNLHGFEVDNHVYLLMKKI 111
>gi|427786179|gb|JAA58541.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 113
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 79/111 (71%), Gaps = 2/111 (1%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN+ LYP+ +GDKF + +A TL DG PD G Y P + AD +E +M+GK+
Sbjct: 1 MDLILDVNTMLYPVDLGDKFRLVIATTLREDGYPDDGEYNPADTGPSRADSFECVMYGKI 60
Query: 97 FKI-GDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
++I GD+ +G++ + YVS+GGLLM L+GDP+ + FE+D ++LLM+K+
Sbjct: 61 YRIEGDDITGETTRLAAYVSFGGLLMRLQGDPNNLHGFEVDNHVYLLMKKI 111
>gi|405122250|gb|AFR97017.1| DNA-directed RNA polymerase I [Cryptococcus neoformans var. grubii
H99]
Length = 165
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 20/163 (12%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F+D F V+ +D DGKKFD+VSRI A S + M + LD+ +ELYP+ + FT+ L
Sbjct: 4 SSNIIFDDRFTVDTVDKDGKKFDRVSRITATSHSLSMSLTLDIANELYPVEQSETFTLTL 63
Query: 62 AHTL------NLDGTP--DTGYYTPGARKT-----------LADKYEYIMHGKLFKIGDE 102
A +L LD D G R+ LA+ Y+Y+M+GK++K D
Sbjct: 64 ARSLVPSELEALDNNAGGDEGEDGSEVRRVKRELWRSNEQGLAEDYDYVMYGKIYKFDDS 123
Query: 103 GSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
G++ + Y S+GGLLM L+G +++ + + ++LLMRK
Sbjct: 124 AQGEA-QTTAYFSFGGLLMALRGSYRHLAGVVVGENVYLLMRK 165
>gi|45185797|ref|NP_983513.1| ACR111Cp [Ashbya gossypii ATCC 10895]
gi|44981552|gb|AAS51337.1| ACR111Cp [Ashbya gossypii ATCC 10895]
gi|374106720|gb|AEY95629.1| FACR111Cp [Ashbya gossypii FDAG1]
Length = 144
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 97/146 (66%), Gaps = 10/146 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+DIF ++++D +++KVSRIEA S + D L LDVN+EL+P++ + T+ LA
Sbjct: 4 TLFDDIFTIQEVDQ--GRYNKVSRIEAISTSQDTCKLTLDVNTELFPLQPQQQLTVMLAT 61
Query: 64 TLNLDGTPDT-GYY---TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
TLNLDGT D+ G + PGAR +LAD ++Y+ +G +K + K + A +Y S+GGL
Sbjct: 62 TLNLDGTEDSHGSWRPPAPGAR-SLADDFDYVTYGTAYKFEEANGNKDMLA-VYYSFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRK 145
LM L+G+ +S+F+ + ++LL R+
Sbjct: 120 LMRLEGNYRLLSNFK-QENVYLLCRR 144
>gi|336265870|ref|XP_003347705.1| hypothetical protein SMAC_03803 [Sordaria macrospora k-hell]
gi|380091239|emb|CCC11096.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 152
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 2 SNIVLFEDIFVVEKI-DPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
S+ LFED F VE+I DP K+D+V R+ S + M LD+N EL+P++VGD +A
Sbjct: 6 SDAQLFEDDFKVERISDP---KYDRVDRLYCTSTDGQTSMQLDINKELFPVKVGDYLRIA 62
Query: 61 LAHTLNLDGTPD--TGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA +L+LDG+ D G+ +TLAD YEY+ HGK++K D G+++KA Y+
Sbjct: 63 LATSLSLDGSKDDERGWRDAAKLGSVEQTLADSYEYVCHGKVYKFEDGKDGQTIKA--YM 120
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
SYGGLLM L G ++ +D L R
Sbjct: 121 SYGGLLMALDGPYKKLTPLRVDYVYLLATR 150
>gi|380024942|ref|XP_003696245.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Apis florea]
gi|380024946|ref|XP_003696247.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Apis florea]
Length = 115
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 78/113 (69%), Gaps = 4/113 (3%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARK--TLADKYEYIMHGK 95
M ++LD+NS LYPM +GDKF + LA TL DG PD G + ++ + AD +EY+M G
Sbjct: 1 MDLILDINSWLYPMELGDKFRLVLATTLREDGYPDGGEWNATEQEGGSRADSFEYVMSGM 60
Query: 96 LFKI-GDEGSGK-SLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
+++I GDE S + S + YVS+GGLLM L+GD + + FE+DQ ++LLM+KL
Sbjct: 61 VYRIEGDEASNEPSSRLSAYVSFGGLLMRLQGDANNLHGFEIDQHMYLLMKKL 113
>gi|358375168|dbj|GAA91753.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus kawachii IFO 4308]
Length = 144
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 97/151 (64%), Gaps = 13/151 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSR+ +S + + LDVNSELYP V + MA
Sbjct: 1 MSDPLLFEDTFTITAINQ--QKYDRVSRLSCNSTDTLSHFTLDVNSELYPCVVNESLNMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL+LDG D+G + G R +TLA+ Y+Y+ HGK+++ +EGS + A +++
Sbjct: 59 LASTLSLDGKDDSG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGSSQGNMA-VFI 114
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L+G ++ +D ++LL++K
Sbjct: 115 SFGGLLLYLEGPYKKLAPLRIDY-VYLLLKK 144
>gi|259489599|tpe|CBF90004.1| TPA: DNA-directed RNA polymerases i, ii, and iii 145 kDa
polypeptide (AFU_orthologue; AFUA_5G11120) [Aspergillus
nidulans FGSC A4]
Length = 145
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 91/149 (61%), Gaps = 8/149 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F V ++ + K+D+VSR+ S + LD+NSELYP G+ +MA
Sbjct: 1 MSDPLLFEDTFTVTGVNQE--KYDRVSRLTCTSSDSQTTFTLDINSELYPCTTGESLSMA 58
Query: 61 LAHTLNLDGTPD---TGYYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
LA TL+LDG D TG+ G +TLA+ Y+Y+ HGK+++ +E S +VS+
Sbjct: 59 LASTLSLDGKEDGAKTGWREVGMGEQTLANDYDYVCHGKVYRF-EEASDSPGNMAAFVSF 117
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLL+ L+G ++ +D ++LL++K
Sbjct: 118 GGLLLYLEGPYKKLAPLRIDY-VYLLLKK 145
>gi|255713772|ref|XP_002553168.1| KLTH0D10538p [Lachancea thermotolerans]
gi|238934548|emb|CAR22730.1| KLTH0D10538p [Lachancea thermotolerans CBS 6340]
Length = 144
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 97/148 (65%), Gaps = 10/148 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LF+DIF V ++D +++KVSRIEAHS + + + +D+N+EL+P+RV D T+ L+
Sbjct: 2 STTLFDDIFQVTEVDL--GRYNKVSRIEAHSTSQEFLLTVDINTELFPVRVNDTLTVMLS 59
Query: 63 HTLNLDG--TPDTGYY---TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
TL++DG T G + PG R +LAD Y+Y+M+G ++ +E +GK +Y S+G
Sbjct: 60 STLSIDGSETVQGGSWRAPQPGER-SLADDYDYVMYGTAYRF-EEVAGKKDLIAVYYSFG 117
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GLLM L+G+ +S+ + + +LL+R+
Sbjct: 118 GLLMRLEGNYRGLSNLK-QENAYLLVRR 144
>gi|119479105|ref|XP_001259581.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Neosartorya fischeri NRRL 181]
gi|119407735|gb|EAW17684.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Neosartorya fischeri NRRL 181]
Length = 145
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 94/150 (62%), Gaps = 10/150 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSR+ S + LD+NSELYP VG+ +MA
Sbjct: 1 MSDPLLFEDTFTITAIN--SQKYDRVSRLTCTSSDSMTTFTLDINSELYPCAVGESVSMA 58
Query: 61 LAHTLNLDGTPDTG----YYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
LA TL+LDG TG + GA +TLA+ Y+Y+ HGK+++ + + ++ ++VS
Sbjct: 59 LASTLSLDGKEATGAKASWREVGAGEQTLANDYDYVCHGKVYRFEEAATQGNMA--VFVS 116
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLL+ L+G ++ +D ++LL++K
Sbjct: 117 FGGLLLYLEGPYKKLAPLRIDY-VYLLLKK 145
>gi|85109003|ref|XP_962700.1| hypothetical protein NCU08030 [Neurospora crassa OR74A]
gi|28924311|gb|EAA33464.1| hypothetical protein NCU08030 [Neurospora crassa OR74A]
gi|39979130|emb|CAE85504.1| related to DNA-directed RNA polymerase chain RPB8 [Neurospora
crassa]
Length = 152
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 2 SNIVLFEDIFVVEKI-DPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
S+ LFED F VE+I DP K+D+V R+ S + M LDVN EL+P++VG+ +A
Sbjct: 6 SDAQLFEDEFKVERISDP---KYDRVDRLYCTSVDGQTSMQLDVNKELFPVKVGEYLRIA 62
Query: 61 LAHTLNLDGTPD--TGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA +L+LDG+ D G+ +TLAD YEY+ HGK++K D G+++KA Y+
Sbjct: 63 LATSLSLDGSKDDERGWRDAAKLGSVEQTLADSYEYVCHGKVYKFEDGKDGQTIKA--YM 120
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
SYGGLLM L G ++ +D L R
Sbjct: 121 SYGGLLMALDGPYKKLTPLRVDYVYLLANR 150
>gi|449664804|ref|XP_002163514.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Hydra magnipapillata]
Length = 115
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARK-TLADKYEYIMHGKL 96
M ++LDVN+++YP+ +G+KF + L TL DGTPD G Y + AD++EY+M+GK+
Sbjct: 1 MDLILDVNTQIYPVDLGEKFRLVLVTTLREDGTPDDGEYNMADNDPSRADQFEYVMYGKV 60
Query: 97 FKIGDEGSGK---SLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
++I DE G + + YVSYGGLLM L+GD + + E+DQ ++LLM+K+
Sbjct: 61 YRIDDENVGSDHFTNRLSAYVSYGGLLMRLQGDANNLHGMEIDQHVYLLMKKI 113
>gi|317147446|ref|XP_003189920.1| UDP-glucose 4-epimerase Gal10 [Aspergillus oryzae RIB40]
Length = 144
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 96/151 (63%), Gaps = 13/151 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + ++ +K+D+VSR+ S + LDVN+ELYP G+ +MA
Sbjct: 1 MSDPLLFEDTFTITGVNQ--QKYDRVSRLTCTSTDHSSTFTLDVNTELYPCTTGESVSMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL+LDG DTG + G R +TLA+ Y+Y+ HGK+++ +EG+ + A +++
Sbjct: 59 LASTLSLDGKEDTG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGTTQGNMA-VFI 114
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L+G ++ +D ++LL++K
Sbjct: 115 SFGGLLLYLEGPYKKLAPLRIDY-VYLLLKK 144
>gi|164657193|ref|XP_001729723.1| hypothetical protein MGL_3267 [Malassezia globosa CBS 7966]
gi|159103616|gb|EDP42509.1| hypothetical protein MGL_3267 [Malassezia globosa CBS 7966]
Length = 147
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 86/150 (57%), Gaps = 9/150 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS LF+ FVV+ IDPDGKKFD+VSR+ A S DM + LD+ +++YP+ VG +
Sbjct: 1 MSTNSLFDTQFVVKDIDPDGKKFDRVSRVIASSPTLDMTLSLDIATDIYPVHVGQQLAFL 60
Query: 61 LAHTLNLDGTPDTGYYTPGARK------TLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
L +L D A + +LA ++Y+M+GK+FK DE S + + +Y
Sbjct: 61 LVSSLRRDKAESDATADRDAWRLDQDDNSLAKGFDYVMYGKIFKY-DERSTE--QVTVYG 117
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
S+GGLLM L G ++S + ++LLMR
Sbjct: 118 SFGGLLMALTGSFRHLSKITVGSNVYLLMR 147
>gi|70997587|ref|XP_753536.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus fumigatus Af293]
gi|66851172|gb|EAL91498.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus fumigatus Af293]
gi|159126732|gb|EDP51848.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus fumigatus A1163]
Length = 145
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 10/150 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LF+D F + I+ +K+D+VSR+ S + LD+NSELYP VG+ +MA
Sbjct: 1 MSDPLLFDDTFTITAIN--SQKYDRVSRLSCTSSDSVTTFTLDINSELYPCAVGESVSMA 58
Query: 61 LAHTLNLDGTPDTG----YYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
LA TL+LDG TG + GA +TLA+ Y+Y+ HGK+++ + + ++ ++VS
Sbjct: 59 LASTLSLDGKEATGAKASWREVGAGEQTLANDYDYVCHGKVYRFEEAATQGNMA--VFVS 116
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLL+ L+G ++ +D ++LL++K
Sbjct: 117 FGGLLLYLEGPYKKLAPLRIDY-VYLLLKK 145
>gi|407920287|gb|EKG13502.1| RNA polymerase Rpb8 [Macrophomina phaseolina MS6]
Length = 142
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 90/148 (60%), Gaps = 9/148 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ L+ED F + +D K+D+V+R+ S + M LD+NSELYP+ VG+ +
Sbjct: 1 MADSQLYEDTFHITSLD--AAKYDRVTRLAGTSADNQTTMTLDINSELYPVEVGETVQLL 58
Query: 61 LAHTLNLDGTPDTGYYT---PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
LA TLNLDGT D + TLAD Y+Y+ HGK+++ +EG G +K +Y+S+G
Sbjct: 59 LASTLNLDGTKDERGWRELDSSTETTLADMYDYVCHGKVYRF-EEGDGDHIK--VYISFG 115
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GLL+ + G ++ +D ++LL++K
Sbjct: 116 GLLLFIDGPYKKLTPLRIDY-VYLLLKK 142
>gi|115401436|ref|XP_001216306.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190247|gb|EAU31947.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 145
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 12/151 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+VSR+ S + LDVN+ELYP VG+ +MA
Sbjct: 1 MSDPVLFEDTFTITAIN--AQKYDRVSRLTCTSSDNFTTFTLDVNTELYPCAVGESLSMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
+A TL+LDG D+G G R ++LA+ Y+Y+ HGK+++ +EGS S +++
Sbjct: 59 IASTLSLDGKEDSGTKV-GWREVGMGEQSLANDYDYVCHGKVYRF-EEGS-TSGNMAVFI 115
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L+G + +D ++LL++K
Sbjct: 116 SFGGLLLYLEGPYKKTAPLRIDY-VYLLLKK 145
>gi|121713590|ref|XP_001274406.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus clavatus NRRL 1]
gi|119402559|gb|EAW12980.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus clavatus NRRL 1]
Length = 145
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 94/150 (62%), Gaps = 10/150 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSR+ S + LDVN+ELYP VG+ +MA
Sbjct: 1 MSDPLLFEDTFTITGIN--AQKYDRVSRLTCTSSDSLTTFTLDVNTELYPCSVGESLSMA 58
Query: 61 LAHTLNLDGTPDTG----YYTPGARK-TLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
LA TL+LDG TG + GA + TLA+ Y+Y+ HGK+++ + + ++ ++VS
Sbjct: 59 LASTLSLDGKEATGGKASWREVGAGELTLANDYDYVCHGKVYRFEEAATQGNMA--VFVS 116
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLL+ L+G ++ +D ++LL++K
Sbjct: 117 FGGLLLYLEGPYKKLAPLRIDY-VYLLLKK 145
>gi|336365669|gb|EGN94019.1| hypothetical protein SERLA73DRAFT_189168 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378215|gb|EGO19374.1| hypothetical protein SERLADRAFT_479872 [Serpula lacrymans var.
lacrymans S7.9]
Length = 161
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 20/160 (12%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNIV F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P+ F +AL
Sbjct: 6 SNIV-FDDIFNINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNIELFPLAKDQNFALAL 64
Query: 62 AHTLN--------------LDGTPDTGYYTPGARKT--LADKYEYIMHGKLFKIGDEGSG 105
A +L+ + + P A++ L D Y Y+M+GK++K D G+
Sbjct: 65 ATSLSRDGGGAGAGADGADDSEGKERDLWRPDAKRQGGLDDDYGYVMYGKVYKF-DGGTA 123
Query: 106 KSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+ + A Y S+GGLLM L G ++++ L ++LLMRK
Sbjct: 124 EVVTA--YASFGGLLMSLTGSFRHMTNVVLGDPVYLLMRK 161
>gi|238496015|ref|XP_002379243.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus flavus NRRL3357]
gi|220694123|gb|EED50467.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus flavus NRRL3357]
Length = 144
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 96/151 (63%), Gaps = 13/151 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + ++ +K+D+VSR+ S + LDVN+ELYP G+ +M+
Sbjct: 1 MSDPLLFEDTFTITGVNQ--QKYDRVSRLTCTSTDHSSTFTLDVNTELYPCTTGESVSMS 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL+LDG DTG + G R +TLA+ Y+Y+ HGK+++ +EG+ + A +++
Sbjct: 59 LASTLSLDGKEDTG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGTTQGNMA-VFI 114
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L+G ++ +D ++LL++K
Sbjct: 115 SFGGLLLYLEGPYKKLAPLRIDY-VYLLLKK 144
>gi|320580973|gb|EFW95195.1| RNA polymerase subunit ABC14.5 [Ogataea parapolymorpha DL-1]
Length = 148
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 92/150 (61%), Gaps = 16/150 (10%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHS-QNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
LF+DIF V+ +D ++DKVSRI A+S + D + LD+N+EL+P+ GD ++ LA
Sbjct: 4 TLFDDIFSVQSLD--SARYDKVSRIIANSTSSADTKLTLDINTELFPVSTGDSLSVTLAK 61
Query: 64 TLNLDGTPD-------TGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
+L L+G D G + P +++L D+Y+Y+MHG ++K + GK +YV
Sbjct: 62 SLALEGAEDDQSMFSTNGSWRPPKPGQRSLMDEYDYVMHGTVYKFEE---GKDDNISVYV 118
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
S+GGLLM L+G+ +S + + L++L+R
Sbjct: 119 SFGGLLMCLEGNYRSLSSLK-QENLYILIR 147
>gi|66362188|ref|XP_628058.1| RNA polymerase II B8 subunit [Cryptosporidium parvum Iowa II]
gi|67601478|ref|XP_666402.1| RNA polymerase subunit 8c [Cryptosporidium hominis TU502]
gi|46227448|gb|EAK88383.1| RNA polymerase II B8 subunit [Cryptosporidium parvum Iowa II]
gi|54657390|gb|EAL36170.1| RNA polymerase subunit 8c [Cryptosporidium hominis]
Length = 144
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 87/141 (61%), Gaps = 7/141 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LFED FV+ +D KFD++ RI S D ++LD+N+EL+P+R + + L+
Sbjct: 6 CLFEDRFVINSVD--SGKFDRIGRIRGRSVGFDADLILDINNELFPVREKESLYIGLSSQ 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
++++ P+ + +TL D+Y+Y+M+GK++++ ++ +S + +Y S+GGLLM L
Sbjct: 64 VSVN--PNDIVWDNSGPQTLMDQYDYVMYGKIYRVEEK---QSDRRSLYASFGGLLMSLT 118
Query: 125 GDPSYVSHFELDQRLFLLMRK 145
D + V F LD RL+ L+R+
Sbjct: 119 ADKNLVGDFSLDMRLYCLVRR 139
>gi|261201922|ref|XP_002628175.1| UDP-glucose 4-epimerase Gal10 [Ajellomyces dermatitidis SLH14081]
gi|239590272|gb|EEQ72853.1| UDP-glucose 4-epimerase Gal10 [Ajellomyces dermatitidis SLH14081]
gi|239611985|gb|EEQ88972.1| UDP-glucose 4-epimerase Gal10 [Ajellomyces dermatitidis ER-3]
gi|327353449|gb|EGE82306.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis ATCC 18188]
Length = 146
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 11/151 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+V+RI S + LDVN+ELYP+ G+ ++A
Sbjct: 1 MSDPVLFEDTFTITSIN--AQKYDRVARISCTSSDNLTTFTLDVNTELYPVSTGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG D+ R +TLA+ Y+Y+ HGK+++ + + +++ ++V
Sbjct: 59 LASTLALDGKDDSAGGKGAWRDVGMGEQTLANDYDYVCHGKVYRFEEGNTAENMS--VFV 116
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L+G ++ +D ++LLM+K
Sbjct: 117 SFGGLLLYLEGPYKKLNPLRIDY-IYLLMKK 146
>gi|294895134|ref|XP_002775083.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
gi|239880950|gb|EER06899.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
Length = 143
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 10/146 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+FED+F V+ ID + KFD+VSRI+A S + + +D+N+E+YP+ D +A+A
Sbjct: 3 AIFEDMFDVKNIDDE--KFDRVSRIKAQSHTYNAEIEVDINTEIYPIGSSDTLRIAIASA 60
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAE---IYVSYGGLLM 121
+ + GY A+ + D YEY M+GK++K ++ G A IYVS+GGLLM
Sbjct: 61 AD----ANEGYQGEAAQPGIIDDYEYAMYGKVYKKMNKTVGTETVASRTIIYVSFGGLLM 116
Query: 122 MLKGDPSYVSH-FELDQRLFLLMRKL 146
L+ S V LD RL+LLMRK+
Sbjct: 117 KLEAQRSDVDEAIRLDDRLYLLMRKV 142
>gi|242762372|ref|XP_002340364.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Talaromyces stipitatus ATCC 10500]
gi|218723560|gb|EED22977.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Talaromyces stipitatus ATCC 10500]
Length = 146
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 11/151 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ LFED F + I+ +K+D+VSRI S + LD+N+ELYP VG+ +MA
Sbjct: 1 MSDSQLFEDTFTITSINS--QKYDRVSRISCTSTDNLTTFTLDINTELYPCAVGESLSMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL+LDG + + G R TLA++Y+Y+ HGK+++ +EGS S ++V
Sbjct: 59 LASTLSLDGKDEDNAASRGWRDVGMGEHTLANEYDYVCHGKVYRF-EEGS-TSGNMSVFV 116
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ + G + + +D ++LL++K
Sbjct: 117 SFGGLLLYMDGPYNKLVPLRIDY-VYLLLKK 146
>gi|388579709|gb|EIM20030.1| RNA polymerase [Wallemia sebi CBS 633.66]
Length = 141
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 91/146 (62%), Gaps = 6/146 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS ++F+ +F V+ ID DGKKFD+V+R+ A S ++ ++D+ E++ + +KFT+A
Sbjct: 1 MSTSIVFDHLFTVDSIDKDGKKFDRVARVGAISTTPNLNCIIDLPIEIFSLSQNEKFTLA 60
Query: 61 LAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
L+ +L+ D T + PG + LA YEY+ GK++K DE GK A Y+S+GGL
Sbjct: 61 LSTSLSSDN--GTSGWRPGMGNEGLAADYEYVCFGKVYKF-DE--GKQEIATAYISFGGL 115
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRK 145
L+ + G Y++ + + ++LL+R+
Sbjct: 116 LLAITGHVRYLTDISVGEDIYLLIRR 141
>gi|209881476|ref|XP_002142176.1| RNA polymerase II B8 subunit [Cryptosporidium muris RN66]
gi|209557782|gb|EEA07827.1| RNA polymerase II B8 subunit, putative [Cryptosporidium muris RN66]
Length = 144
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LFED F V +D KF+++ RI S D ++LD+NS+L+P+R +K ++ + +
Sbjct: 6 CLFEDRFTVNSVD--SGKFERIGRIRGKSVGLDADLILDINSDLFPVR--EKESLYIGLS 61
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
+ P + A +TL D+Y+Y+M+GK++++ ++ S + +Y SYGGLLM L
Sbjct: 62 TQVSQNPSDVVWDSAAPQTLMDQYDYVMYGKIYRVEEKQSDRR---TLYASYGGLLMALT 118
Query: 125 GDPSYVSHFELDQRLFLLMRK 145
D + V F LD RL+ L+R+
Sbjct: 119 ADKNLVGDFTLDMRLYCLVRR 139
>gi|340059011|emb|CCC53382.1| putative RNA polymerase B subunit RPB8 [Trypanosoma vivax Y486]
Length = 149
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+ ED F + ++PDG + +VSR++ +++ D+ + DVN+E +P+ +GD+ T+ LA++
Sbjct: 6 VILEDAFTITALNPDGVVYKRVSRVQCKNEHGDLTVTSDVNTEEFPLFLGDRLTIMLANS 65
Query: 65 LNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMM 122
+ L G P T YY R T +Y MHG+++ G E SL+ ++++S GGLL
Sbjct: 66 IELSGQPGTKYYDQSVYHRDTRLQDCDYAMHGRVY--GHEVDESSLEVKVHISCGGLLTQ 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
+ G P + + +++LM+++
Sbjct: 124 VIGSPHSLRDIHYNSDIYILMKRV 147
>gi|440639238|gb|ELR09157.1| hypothetical protein GMDG_03735 [Geomyces destructans 20631-21]
Length = 151
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 87/151 (57%), Gaps = 12/151 (7%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ LF++ F + D K+D+VSRI A SQ+ LD+N+EL+P VG+ M L
Sbjct: 6 SDSQLFDEHFTITA--SDQSKYDRVSRISATSQDSQTTFALDINTELFPCAVGEPLHMVL 63
Query: 62 AHTLNLDGTP-------DTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
A TL+LDG+ D G G TLAD ++Y+ HGK++K D G +K YV
Sbjct: 64 ASTLSLDGSKDDNKGWRDVGRSGQGGEATLADLFDYVCHGKIYKFEDGDDGNIIKC--YV 121
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L+G ++ +D ++LL++K
Sbjct: 122 SFGGLLLALEGPYKKLTPLRVDY-IYLLIKK 151
>gi|226293976|gb|EEH49396.1| DNA-directed RNA polymerases i [Paracoccidioides brasiliensis Pb18]
Length = 146
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 11/151 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F V I+ +K+D+V+RI S + LDVN+ELYP+ G+ ++A
Sbjct: 1 MSDPVLFEDTFTVTAIND--QKYDRVARISCTSSDNLTIFTLDVNTELYPVATGETLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG D+ R +TLA+ Y+Y+ HGK+++ + + +++ ++V
Sbjct: 59 LASTLALDGKDDSAGGKGAWRDVSMGEQTLANDYDYVCHGKVYRFEEGNTVENMS--VFV 116
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L+G +S +D ++LLM+K
Sbjct: 117 SFGGLLLYLEGPYKKLSPLRIDY-IYLLMKK 146
>gi|443732193|gb|ELU17021.1| hypothetical protein CAPTEDRAFT_19276 [Capitella teleta]
Length = 114
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTP-GARKTLADKYEYIMHGKL 96
M ++LDVN++LYP+ +GDKF M +A +L DG PD G Y P + + A +EY+M+GK+
Sbjct: 1 MDLILDVNTQLYPVDLGDKFRMVIATSLREDGAPDDGEYDPEESVSSRATSFEYVMYGKV 60
Query: 97 FKIGDEGSGKSLKAEI--YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
++ + SG+ + + YVSYGGLLM L+GD + + FE+D ++L M+KL
Sbjct: 61 YRFEGDESGQEPGSRLAAYVSYGGLLMRLQGDANNLHGFEVDSHVYLFMKKL 112
>gi|295670167|ref|XP_002795631.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|225684342|gb|EEH22626.1| DNA-directed RNA polymerases i [Paracoccidioides brasiliensis Pb03]
gi|226284716|gb|EEH40282.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 146
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 11/151 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+V+RI S + LDVN+ELYP+ G+ ++A
Sbjct: 1 MSDPVLFEDTFTITAIND--QKYDRVARISCTSSDNLTIFTLDVNTELYPVATGETLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG D+ R +TLA+ Y+Y+ HGK+++ + + +++ ++V
Sbjct: 59 LASTLALDGKDDSAGGKGAWRDVSMGEQTLANDYDYVCHGKVYRFEEGNTVENMS--VFV 116
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L+G +S +D ++LLM+K
Sbjct: 117 SFGGLLLYLEGPYKKLSPLRIDY-IYLLMKK 146
>gi|363756420|ref|XP_003648426.1| hypothetical protein Ecym_8331 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891626|gb|AET41609.1| Hypothetical protein Ecym_8331 [Eremothecium cymbalariae
DBVPG#7215]
Length = 189
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 93/147 (63%), Gaps = 14/147 (9%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHS---QNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+F+DIF +++ID +++KVSRIEA S ++C + LDVN+EL+P++ + T+ L
Sbjct: 49 TIFDDIFTIQEIDQG--RYNKVSRIEATSTSQESCKL--TLDVNTELFPLKPQQQLTVML 104
Query: 62 AHTLNLDGTPDTGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
A TLN G DTG PG R +LAD ++Y+M+G +K + K + A +Y S+G
Sbjct: 105 ATTLNASGGEDTGASWRAPVPGTR-SLADDFDYVMYGTAYKFEEAHGNKDMLA-VYYSFG 162
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMR 144
GLLM L+G+ +S+F+ + ++LL R
Sbjct: 163 GLLMRLEGNYRLLSNFK-QENVYLLCR 188
>gi|398391933|ref|XP_003849426.1| hypothetical protein MYCGRDRAFT_47713 [Zymoseptoria tritici IPO323]
gi|339469303|gb|EGP84402.1| hypothetical protein MYCGRDRAFT_47713 [Zymoseptoria tritici IPO323]
Length = 142
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 7/147 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ L+E+ F V + + +D+V R+ SQ+ LD+N ELYP+ G+ F+M
Sbjct: 1 MSDAQLYEEAFNVNTLLD--QAYDRVHRVIGTSQDSSTSYTLDINCELYPLVAGETFSML 58
Query: 61 LAHTLNLDGTPD--TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGG 118
LA TLNLDGT D G+ TLAD ++Y+ +GK++K+ D G ++K +Y+S+GG
Sbjct: 59 LASTLNLDGTKDEGQGWRGKSTGSTLADLWDYVCYGKVYKVEDPEDGDNIK--VYISFGG 116
Query: 119 LLMMLKGDPSYVSHFELDQRLFLLMRK 145
LL+ L G +S ++ + +++L++K
Sbjct: 117 LLLSLNGPYKKLSPLKI-EYVYMLLKK 142
>gi|58271454|ref|XP_572883.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kda polypeptide
[Cryptococcus neoformans var. neoformans JEC21]
gi|134114998|ref|XP_773797.1| hypothetical protein CNBH2490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256425|gb|EAL19150.1| hypothetical protein CNBH2490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229142|gb|AAW45576.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kda polypeptide,
putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 157
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 28/163 (17%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F+D F V+ +D DGKKFD+VSRI A S + M + LD+ +ELYP+ + FT+ L
Sbjct: 4 SSNIIFDDRFTVDTVDKDGKKFDRVSRITATSHSLSMSLTLDIANELYPLEQSETFTLTL 63
Query: 62 AHTL------NLDGTPDTGYYTPGA-------------RKTLADKYEYIMHGKLFKIGDE 102
A +L LD D G+ + LA+ Y+Y+M+GK+ K G
Sbjct: 64 ARSLVPSELETLDSRADGDEGEEGSEVRRVKRELWRSHEQGLAEDYDYVMYGKVGKGG-- 121
Query: 103 GSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+ Y S+GGLLM L+G +++ + + ++LLMRK
Sbjct: 122 -------STAYFSFGGLLMALRGSYRHLAGVVVGENVYLLMRK 157
>gi|401883784|gb|EJT47971.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kda polypeptide
[Trichosporon asahii var. asahii CBS 2479]
gi|406696310|gb|EKC99602.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kda polypeptide
[Trichosporon asahii var. asahii CBS 8904]
Length = 187
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 87/144 (60%), Gaps = 13/144 (9%)
Query: 14 EKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLD-GTPD 72
+ +D DGKKFD+VSRI A S + M + LDV +ELYP++V D F++ LA L D +
Sbjct: 45 QDVDRDGKKFDRVSRINAKSSDLGMELTLDVANELYPLKVDDHFSLLLARNLKPDEIEAE 104
Query: 73 TGYYTPGARKT-----------LADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLM 121
T G RK LA+ Y+Y+M+GK++K D G+++ Y+S+GGLL+
Sbjct: 105 EDEETEGTRKIKRELWRADDQGLANDYDYVMYGKIYKFDDAQKGEAMTT-AYMSFGGLLL 163
Query: 122 MLKGDPSYVSHFELDQRLFLLMRK 145
L+G ++++ + + ++LLMRK
Sbjct: 164 ALRGSYRHLANVVVGENVYLLMRK 187
>gi|260946845|ref|XP_002617720.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238849574|gb|EEQ39038.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 148
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 90/145 (62%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F VE ID +++KVSRIEA S D+ + LD+N EL+P++ D T+ALA
Sbjct: 4 ILFEDMFNVESID--NARYNKVSRIEAQSSTSQDIKITLDINRELFPVKDNDSLTIALAS 61
Query: 64 TLNLDGT--PDTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L + + G + P R ++LAD Y+Y+M+G ++K E S + K +Y+S+GGL
Sbjct: 62 SLGNESSMLTSNGSWRPPKRGDRSLADDYDYVMYGTVYKF--EESSDNDKMAVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G +S + + ++L+R
Sbjct: 120 LMRLEGGYRSLSSLK-QENAYILIR 143
>gi|156049537|ref|XP_001590735.1| UDP-glucose 4-epimerase Gal10 [Sclerotinia sclerotiorum 1980]
gi|154692874|gb|EDN92612.1| UDP-glucose 4-epimerase Gal10 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 151
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 92/148 (62%), Gaps = 13/148 (8%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQ-NCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LF++ F V ++D KK+ +V RI+A S + + MLLD+N+ELYP+ VGD + LA +
Sbjct: 9 LFDEHFTVNELDH--KKYVRVGRIKATSTVDHSVSMLLDINTELYPLAVGDNIRVVLATS 66
Query: 65 LNLDGTPDTG-------YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
LNLDGT D G G TLAD ++Y+ HGK++K D+ + +KA Y+S+G
Sbjct: 67 LNLDGTKDDGKGWRDANRMGLGGEATLADMFDYVCHGKIYKFEDQENSDLIKA--YISFG 124
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GLLM L+G ++ +D ++LL++K
Sbjct: 125 GLLMGLEGPYKKLTPLRVDY-VYLLIKK 151
>gi|320591381|gb|EFX03820.1| DNA-directed RNA polymerases and 3 polypeptide [Grosmannia
clavigera kw1407]
Length = 153
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 89/149 (59%), Gaps = 14/149 (9%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED F + +D K+D+V+RI S + + LD+N+EL+P G+ T+ LA TL
Sbjct: 10 LFEDSFTITNVDQ--SKYDQVARIYGTSADAQTVISLDINTELFPCVTGENLTVVLATTL 67
Query: 66 NLDGT--PDTGY---YTPGAR----KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
+LDG+ D G+ PGA +LAD Y+Y+ HGK++K D G+++KA Y+S+
Sbjct: 68 SLDGSRDDDKGWRDLTKPGAAGAGDTSLADMYDYVCHGKIYKFEDGEDGQTIKA--YISF 125
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLLM L G ++ +D +LL++K
Sbjct: 126 GGLLMSLAGPFKKLTPLRVDYT-YLLVKK 153
>gi|212529726|ref|XP_002145020.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Talaromyces marneffei ATCC 18224]
gi|210074418|gb|EEA28505.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Talaromyces marneffei ATCC 18224]
Length = 147
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 91/152 (59%), Gaps = 12/152 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ LFED F + I+ +K+D+VSRI S + LDVN+ELYP VG+ +MA
Sbjct: 1 MSDAQLFEDTFTITSINS--QKYDRVSRISCTSTDNLTTFTLDVNTELYPCAVGESLSMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK-------TLADKYEYIMHGKLFKIGDEGSGKSLKAEIY 113
LA TL+LDG + G + TLA++Y+Y+ HGK+++ +EGS + ++
Sbjct: 59 LASTLSLDGKDEDASAGRGGWRDVGMGEHTLANEYDYVCHGKVYRF-EEGSTQG-NMSVF 116
Query: 114 VSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
VS+GGLL+ + G + + +D ++LL++K
Sbjct: 117 VSFGGLLLYMDGPYNKLVPLRIDY-VYLLIKK 147
>gi|149238912|ref|XP_001525332.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450825|gb|EDK45081.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
Length = 148
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 90/145 (62%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
VLFED FVV+ DP +++KVSRI HS D+ + LD+NSEL+P++ D T+ALA
Sbjct: 4 VLFEDSFVVDSTDP--GRYNKVSRITGHSSTAKDITITLDINSELFPVKENDSLTIALAS 61
Query: 64 TLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L + + G + P +++AD ++Y+M+G ++K E S S K +Y+S+GGL
Sbjct: 62 SLGNESSMLTSNGSWRPPKPEDRSIADDFDYVMYGTVYKF--EESSDSEKMSVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G +S+ + + ++L+R
Sbjct: 120 LMRLEGGYRSLSNLK-QENAYILIR 143
>gi|344231510|gb|EGV63392.1| RNA polymerase [Candida tenuis ATCC 10573]
Length = 148
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 93/149 (62%), Gaps = 10/149 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTM 59
MS+ +LFED+F VE +D +++KV+RI S ++ + LD+NSEL+P+ D T+
Sbjct: 1 MSSSILFEDMFNVESVD--SARYNKVARITGQSSTSQEIKITLDINSELFPVNDNDSLTI 58
Query: 60 ALAHTLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
ALA TL + + G + P + ++LAD Y+Y+M+G ++K E SG + K +Y+S
Sbjct: 59 ALASTLGNESSMLTSNGSWRPPKPSDRSLADDYDYVMYGTIYKF--EESGTTDKMAVYIS 116
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
+GGLLM L+G +S+ + + ++L+R
Sbjct: 117 FGGLLMCLEGGYRSLSNLK-QENAYILIR 144
>gi|296815578|ref|XP_002848126.1| DNA-directed RNA polymerase I [Arthroderma otae CBS 113480]
gi|238841151|gb|EEQ30813.1| DNA-directed RNA polymerase I [Arthroderma otae CBS 113480]
Length = 146
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 11/151 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + + LDVN+E+YP G+ ++A
Sbjct: 1 MSDPILFEDTFSITSIN--AQKYDRVSRISCTSTDHLITFTLDVNTEIYPCAPGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL+LDG + R TLA+ Y+Y+ +GK+++ E SG + ++V
Sbjct: 59 LASTLSLDGKEEATGERAAWRDVGMGENTLANDYDYVCYGKVYRF--EESGTAGNMAVFV 116
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L G + +S ++D ++LLM+K
Sbjct: 117 SFGGLLLYLDGPYNKLSPLKIDY-VYLLMKK 146
>gi|389635227|ref|XP_003715266.1| UDP-glucose 4-epimerase Gal10 [Magnaporthe oryzae 70-15]
gi|351647599|gb|EHA55459.1| UDP-glucose 4-epimerase Gal10 [Magnaporthe oryzae 70-15]
gi|440466170|gb|ELQ35452.1| UDP-glucose 4-epimerase Gal10 [Magnaporthe oryzae Y34]
gi|440480659|gb|ELQ61312.1| UDP-glucose 4-epimerase Gal10 [Magnaporthe oryzae P131]
Length = 155
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 13/151 (8%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCD--MYMLLDVNSELYPMRVGDKFTM 59
S+ LFE +F V +++ +K+D+V+RI A S M M LD+N+EL+PM G+ F +
Sbjct: 6 SDAQLFEGVFKVTEVNQ--QKYDRVARIWARSDASTDLMDMTLDINTELFPMSEGEVFRV 63
Query: 60 ALAHTLNLDGTPD---TGYYTP---GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIY 113
LA +L+LDG+ D G+ G TLAD ++Y+ HGK++K D G ++KA Y
Sbjct: 64 VLATSLSLDGSKDDDKAGWRDATKLGGPATLADSFDYVCHGKIYKFEDSEDGDNIKA--Y 121
Query: 114 VSYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
+S+GGLLM L G ++ +D ++LL++
Sbjct: 122 ISFGGLLMCLNGPYKKLTPLRVDY-IYLLIK 151
>gi|452838764|gb|EME40704.1| hypothetical protein DOTSEDRAFT_47000 [Dothistroma septosporum
NZE10]
Length = 144
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 90/149 (60%), Gaps = 9/149 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ L+E+ F ++ + +D+V RI +S + LDVNSELYP+ + F M
Sbjct: 1 MADAQLYEESFAATQVLD--QTYDRVHRILGNSHDNATSFTLDVNSELYPIAANESFQML 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK----TLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
+A TLNLDGT D ++ TLAD ++Y+ +GK++++ D G G +K +Y+S+
Sbjct: 59 IASTLNLDGTKDEANQGWRGKRDADPTLADMWDYVCYGKVYRVEDVGEGDQIK--VYISF 116
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLL+ L+G +S ++D ++LL++K
Sbjct: 117 GGLLLCLQGPYKKLSPLKID-YVYLLLKK 144
>gi|294887397|ref|XP_002772089.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
gi|294892730|ref|XP_002774205.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
gi|239876027|gb|EER03905.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
gi|239879422|gb|EER06021.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
Length = 143
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 10/146 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+F+D+F V+ ID + KFD+VSRI+A S + + +D+N+E+YP+ D +A+A
Sbjct: 3 AIFDDMFDVKNIDDE--KFDRVSRIKAQSHTYNAEIEVDINTEIYPIGSSDTLRIAIASA 60
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAE---IYVSYGGLLM 121
+ + GY A+ + D YEY M+GK++K ++ G A IYVS+GGLLM
Sbjct: 61 AD----ANEGYQGESAQPGIIDDYEYAMYGKVYKKMNKTVGTETVASRTIIYVSFGGLLM 116
Query: 122 MLKGDPSYVSH-FELDQRLFLLMRKL 146
L+ S V LD RL+LL+RK+
Sbjct: 117 KLEAQRSDVDESIRLDDRLYLLIRKV 142
>gi|340381936|ref|XP_003389477.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Amphimedon queenslandica]
Length = 211
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 91/149 (61%), Gaps = 15/149 (10%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCD-MYMLLDVNSELYPMRVGDKFTMALAHT 64
+FE F ++ I+ KKF++VSR+ +N + + ++LDVN++LYPM VGD L T
Sbjct: 68 VFESFFQIKDIE---KKFERVSRLFCEGENFNKIQLILDVNTQLYPMSVGDNIHFLLTTT 124
Query: 65 LNLDGT---PDTGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
L D TG Y T GA +LAD ++YIM+GK++++ EG+ SL +YVS+G
Sbjct: 125 LGADHEDFPTVTGTYWSRVTDGATSSLADAFQYIMYGKIYRL--EGAEDSLS--VYVSFG 180
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
GLLM LKGD +D ++LL++K+
Sbjct: 181 GLLMRLKGDDLQGLMMMMDMNVYLLLKKM 209
>gi|146420491|ref|XP_001486201.1| hypothetical protein PGUG_01872 [Meyerozyma guilliermondii ATCC
6260]
gi|146389616|gb|EDK37774.1| hypothetical protein PGUG_01872 [Meyerozyma guilliermondii ATCC
6260]
Length = 148
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 93/145 (64%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F VE +D +++KVSRI A S D+ + LD+NSEL+P+R D T+ LA
Sbjct: 4 ILFEDMFNVESVD--SARYNKVSRIIAQSSTSQDIKITLDINSELFPVRDHDSLTITLAS 61
Query: 64 TLNLDGTPDT--GYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L + + T G + P ++LAD Y+Y+M+G ++K +E +G S K +Y+S+GGL
Sbjct: 62 SLGNEQSQVTSSGSWRPPKAGERSLADDYDYVMYGTVYKF-EENAG-SDKMSVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G+ +S+ + + ++L+R
Sbjct: 120 LMCLEGNYRSLSNLK-QENAYILIR 143
>gi|302891497|ref|XP_003044630.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256725555|gb|EEU38917.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 148
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 87/149 (58%), Gaps = 11/149 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V D D K+D+V+RI S + M LD+N EL+P V D + L+
Sbjct: 5 DATLFEESFTV--TDYDQSKYDRVARISCTSSDSQTVMTLDINIELFPCAVSDTLHVVLS 62
Query: 63 HTLNLDGT--PDTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
TL+LDG+ + G+ G A T+AD Y+Y+ HGK++K + G S+ A YVS+
Sbjct: 63 TTLSLDGSKEEEKGWRDVGKNGDAPATIADLYDYVCHGKIYKFEETYDGNSINA--YVSF 120
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLLM L+G ++ +D ++LL++K
Sbjct: 121 GGLLMSLQGPVKKLTPLRVDN-VYLLVKK 148
>gi|50306807|ref|XP_453379.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642513|emb|CAH00475.1| KLLA0D07139p [Kluyveromyces lactis]
Length = 145
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 92/146 (63%), Gaps = 9/146 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+D+F V+++D +++KVSRIEA S + + L LD+NSEL+P++ D+ + +
Sbjct: 4 ALFDDVFTVQEVDTG--RYNKVSRIEAQSTSQESCKLTLDINSELFPIKTQDQLAVMITT 61
Query: 64 TLNLDGTPD---TGYYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L LDG+ + T + P A ++LAD Y+Y+M+G +K + K L A +Y S+GGL
Sbjct: 62 SLQLDGSEEPQGTSWRAPPAGTRSLADDYDYVMYGTAYKFEEVKGNKDLLA-VYYSFGGL 120
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRK 145
LM L+G+ +++ + + +LL RK
Sbjct: 121 LMRLEGNYRLLNNLK-QENAYLLCRK 145
>gi|255721625|ref|XP_002545747.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
gi|240136236|gb|EER35789.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
Length = 148
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 90/145 (62%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F+V+ DP +++KV RI HS D+ + LD+NSEL+P++ D T+ LA
Sbjct: 4 ILFEDMFIVDSTDP--GRYNKVCRITGHSSTSKDITITLDINSELFPVQNNDSLTITLAS 61
Query: 64 TLNLDG---TPDTGYYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L + T + + P A ++LAD Y+Y+M+G ++K E S + K +Y+S+GGL
Sbjct: 62 SLGNEASMITSNGSWRPPKADDRSLADDYDYVMYGTVYKF--EESSDTDKMSVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G +S+ + + ++L+R
Sbjct: 120 LMRLEGGYRSLSNLK-QENAYILIR 143
>gi|126131888|ref|XP_001382469.1| 16-kDa RNA polymerase subunit (common to polymerases I, II and III)
[Scheffersomyces stipitis CBS 6054]
gi|126094294|gb|ABN64440.1| 16-kDa RNA polymerase subunit (common to polymerases I, II and III)
[Scheffersomyces stipitis CBS 6054]
Length = 148
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 90/146 (61%), Gaps = 10/146 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+FVVE D +++KVSRI HS D+ + LD+NSEL+P++ D T+ LA
Sbjct: 4 ILFEDMFVVESTD--SGRYNKVSRITGHSSTSQDIKISLDINSELFPVKANDSLTITLAS 61
Query: 64 TLNLDGT--PDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L + + G + P ++LAD Y+Y+M+G ++K E + + K +YVS+GGL
Sbjct: 62 SLGNESSMLTSNGSWRPPKPDDRSLADDYDYVMYGTVYKF--EENADNDKMSVYVSFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRK 145
LM L+G +S+ + + ++L+R+
Sbjct: 120 LMRLEGGYRSLSNLK-QENAYILIRQ 144
>gi|396465184|ref|XP_003837200.1| similar to DNA-directed RNA polymerases i [Leptosphaeria maculans
JN3]
gi|312213758|emb|CBX93760.1| similar to DNA-directed RNA polymerases i [Leptosphaeria maculans
JN3]
Length = 146
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 95/151 (62%), Gaps = 12/151 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +FE+ F + I+ +K+D+VSRI +S + + M LD+N EL+P+RVGD M
Sbjct: 1 MADAQVFEETFSITSIN--NEKYDRVSRIYGNSTDNQITMTLDINHELFPVRVGDTLNMV 58
Query: 61 LAHTLNLDGTP----DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL+LDG +T + G + TLAD Y+Y+ +GK +++ D G G ++K Y
Sbjct: 59 LATTLSLDGATKDQNETMWRNVGRQGVTTLADMYDYVCYGKHYRMED-GEGDTMK--YYA 115
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ ++G ++ ++D +++L+++
Sbjct: 116 SFGGLLLFMEGPHKKLNALKIDN-IYMLVKQ 145
>gi|154317637|ref|XP_001558138.1| hypothetical protein BC1G_03170 [Botryotinia fuckeliana B05.10]
gi|347837490|emb|CCD52062.1| similar to DNA-directed RNA polymerases i [Botryotinia fuckeliana]
Length = 151
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 92/148 (62%), Gaps = 13/148 (8%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQ-NCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LF++ F V ++D KK+ +V RI+A S + + MLLD+N+EL+P+ VGD + LA +
Sbjct: 9 LFDEHFTVNELDH--KKYVRVGRIKATSTVDHSVSMLLDINTELFPLAVGDNIRVVLATS 66
Query: 65 LNLDGTPDTG-------YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
LNLDGT D G G +LAD ++Y+ HGK++K D+ + +KA Y+S+G
Sbjct: 67 LNLDGTKDDGKGWRDANRMGLGGEASLADMFDYVCHGKIYKFEDQENSDLIKA--YISFG 124
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GLLM L+G ++ +D ++LL++K
Sbjct: 125 GLLMGLEGPYKKLTPLRVDY-VYLLVKK 151
>gi|388855390|emb|CCF51054.1| related to RPB8-DNA-directed RNA polymerase I, II, III 16 KD
subunit [Ustilago hordei]
Length = 163
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 39/168 (23%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+ FVV++IDPDGKKFD+VSRI A S + +M + +D+ ++++P+ G + T LA TL
Sbjct: 6 LFDTQFVVKQIDPDGKKFDRVSRIIASSASLEMTLSIDIATDIWPVSEGQQLTFQLASTL 65
Query: 66 NLDGTPDTGYYTPGARKT-----------------------------LADKYEYIMHGKL 96
D GA KT +AD ++YIM+GK+
Sbjct: 66 KKD-------TATGASKTDAADGDTQDAAAQAAERDAWRLDQPGNGGIADDFDYIMYGKI 118
Query: 97 FKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
++ ++ + + +Y S+GGL+M L G+ ++S+ + ++LLMR
Sbjct: 119 YRYDEKAAD---EVTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR 163
>gi|171690722|ref|XP_001910286.1| hypothetical protein [Podospora anserina S mat+]
gi|170945309|emb|CAP71421.1| unnamed protein product [Podospora anserina S mat+]
Length = 209
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 11/150 (7%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ LFED F V K+ KK+D+V RI A S++ + + LD+N+EL+P + GD+ M +
Sbjct: 64 SDAQLFEDNFRVHKLS--DKKYDRVDRIYATSEDKSIEITLDINNELFPCKEGDELNMLI 121
Query: 62 AHTLNLDGTPD--TGYYT----PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
A +L+ DGT D G+ + +LAD+Y+Y+ +GK++K D G+++KA Y+S
Sbjct: 122 ATSLHYDGTKDDERGWRDVAKMGASEGSLADQYDYVCYGKIYKFEDGEDGQTIKA--YIS 179
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLLM L G ++ + + ++LL+R+
Sbjct: 180 FGGLLMSLVGPYKKLTPLRV-EYVYLLVRR 208
>gi|343425744|emb|CBQ69278.1| related to RPB8-DNA-directed RNA polymerase I, II, III 16 KD
subunit [Sporisorium reilianum SRZ2]
Length = 162
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 34/165 (20%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+ FVV +IDPDGKKFD+VSRI A S + +M + +D+ ++++P+ G + T LA TL
Sbjct: 6 LFDTQFVVSQIDPDGKKFDRVSRIIASSPSLEMSLSIDIATDVWPVTEGQQLTFQLASTL 65
Query: 66 NLDGT---PDTGYYT-------------------PGARKTLADKYEYIMHGKLF----KI 99
D PD G PG +AD ++Y+M+GK++ K+
Sbjct: 66 KKDTAATKPDAGVDAETHDAAAQAAERDAWRLDQPG-NGGVADDFDYVMYGKIYRYDEKV 124
Query: 100 GDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
DE +Y S+GGL+M L G+ ++S+ + ++LLMR
Sbjct: 125 NDE-------VTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR 162
>gi|389751488|gb|EIM92561.1| RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 160
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 17/158 (10%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ V+F+DIF VE ID +G+KFD+VSR+ AHS+N DM + LD N EL+P+ G +AL
Sbjct: 6 SSNVVFDDIFTVEDIDREGRKFDRVSRLYAHSKNYDMDLTLDYNIELFPLEKGQTLALAL 65
Query: 62 --------AHTLNLDGTPDT----GYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKS 107
A DG D + P R+ L + Y+Y+M+GK+++ D G+ +
Sbjct: 66 ASSLARGPAGPSGADGAEDEDKDKDVWRPDGKGRRGLEEDYDYVMYGKVYRF-DSGTAEI 124
Query: 108 LKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+ A Y S+GGLLM L G +++ L +++L+RK
Sbjct: 125 VTA--YASFGGLLMSLTGSFRHMTSIVLGDPVYILLRK 160
>gi|256071684|ref|XP_002572169.1| DNA-directed rna polymerase subunit rpb8 [Schistosoma mansoni]
gi|353229934|emb|CCD76105.1| putative DNA-directed rna polymerase subunit rpb8 [Schistosoma
mansoni]
Length = 156
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 10/152 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
L EDIF V+ +D DGKKFDKVSR+ S++ M ++LD+++ +Y + GDKF M L T
Sbjct: 3 ALLEDIFDVKDVDKDGKKFDKVSRLFCESESFKMGLILDIHALIYGLSKGDKFRMVLTKT 62
Query: 65 -LNLDGTPDTGYYTPGARKTLADK--------YEYIMHGKLFKIGDEGSG-KSLKAEIYV 114
LN GT A +K ++Y+ +GK+++I + SG + + YV
Sbjct: 63 LLNELGTDADDDDEDDAADETDEKLANSKMAEFDYVCYGKIYRIETQDSGVDASRLSCYV 122
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
S+GGLLM L GD S + F + + L+L+++KL
Sbjct: 123 SFGGLLMQLTGDASNLQGFRVGKHLYLMIKKL 154
>gi|6324798|ref|NP_014867.1| Rpb8p [Saccharomyces cerevisiae S288c]
gi|133340|sp|P20436.1|RPAB3_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC3; Short=RNA polymerases I, II, and III subunit
ABC3; AltName: Full=ABC14.4; AltName: Full=ABC14.5;
AltName: Full=DNA-directed RNA polymerases I, II, and
III 14.5 kDa polypeptide
gi|14278329|pdb|1I3Q|H Chain H, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278340|pdb|1I50|H Chain H, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278370|pdb|1I6H|H Chain H, Rna Polymerase Ii Elongation Complex
gi|20150718|pdb|1K83|H Chain H, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749623|pdb|1NIK|H Chain H, Wild Type Rna Polymerase Ii
gi|30749744|pdb|1NT9|H Chain H, Complete 12-Subunit Rna Polymerase Ii
gi|34810560|pdb|1PQV|H Chain H, Rna Polymerase Ii-Tfiis Complex
gi|46015420|pdb|1R5U|H Chain H, Rna Polymerase Ii Tfiib Complex
gi|46015785|pdb|1SFO|H Chain H, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965916|pdb|1R9S|H Chain H, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965928|pdb|1R9T|H Chain H, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966112|pdb|1TWA|H Chain H, Rna Polymerase Ii Complexed With Atp
gi|56966126|pdb|1TWC|H Chain H, Rna Polymerase Ii Complexed With Gtp
gi|56966136|pdb|1TWF|H Chain H, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966146|pdb|1TWG|H Chain H, Rna Polymerase Ii Complexed With Ctp
gi|56966156|pdb|1TWH|H Chain H, Rna Polymerase Ii Complexed With 2'datp
gi|58177171|pdb|1WCM|H Chain H, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679451|pdb|1Y1W|H Chain H, Complete Rna Polymerase Ii Elongation Complex
gi|61679468|pdb|1Y77|H Chain H, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679509|pdb|1Y1V|H Chain H, Refined Rna Polymerase Ii-tfiis Complex
gi|61679522|pdb|1Y1Y|H Chain H, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754250|pdb|2B63|H Chain H, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590861|pdb|2B8K|H Chain H, 12-Subunit Rna Polymerase Ii
gi|122920066|pdb|2E2H|H Chain H, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920081|pdb|2E2I|H Chain H, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920096|pdb|2E2J|H Chain H, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921035|pdb|2NVQ|H Chain H, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921071|pdb|2NVT|H Chain H, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921087|pdb|2NVX|H Chain H, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921102|pdb|2NVY|H Chain H, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921114|pdb|2NVZ|H Chain H, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104681|pdb|2JA5|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104696|pdb|2JA6|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104717|pdb|2JA7|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104729|pdb|2JA7|T Chain T, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104741|pdb|2JA8|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387189|pdb|2YU9|H Chain H, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|157829640|pdb|1A1D|A Chain A, Yeast Rna Polymerase Subunit Rpb8, Nmr, Minimized Average
Structure, Alpha Carbons Only
gi|160877780|pdb|2R7Z|H Chain H, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172234|pdb|2R92|H Chain H, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172247|pdb|2R93|H Chain H, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613469|pdb|2VUM|H Chain H, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368739|pdb|3CQZ|H Chain H, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983597|pdb|3FKI|H Chain H, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781921|pdb|3GTG|H Chain H, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781934|pdb|3GTJ|H Chain H, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781947|pdb|3GTK|H Chain H, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781960|pdb|3GTL|H Chain H, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781973|pdb|3GTM|H Chain H, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781987|pdb|3GTO|H Chain H, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239782000|pdb|3GTP|H Chain H, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782013|pdb|3GTQ|H Chain H, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104518|pdb|3H3V|I Chain I, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839448|pdb|3HOU|H Chain H, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839463|pdb|3HOU|T Chain T, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839478|pdb|3HOV|H Chain H, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839493|pdb|3HOW|H Chain H, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839508|pdb|3HOX|H Chain H, Complete Rna Polymerase Ii Elongation Complex V
gi|254839523|pdb|3HOY|H Chain H, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839538|pdb|3HOZ|H Chain H, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471953|pdb|3I4M|H Chain H, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471968|pdb|3I4N|H Chain H, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618772|pdb|3K1F|H Chain H, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914557|pdb|3K7A|H Chain H, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982480|pdb|3M3Y|H Chain H, Rna Polymerase Ii Elongation Complex C
gi|295982493|pdb|3M4O|H Chain H, Rna Polymerase Ii Elongation Complex B
gi|325053970|pdb|3PO2|H Chain H, Arrested Rna Polymerase Ii Elongation Complex
gi|325053985|pdb|3PO3|H Chain H, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634545|pdb|3QT1|H Chain H, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197461|pdb|3RZD|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197473|pdb|3RZO|H Chain H, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197485|pdb|3S14|H Chain H, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197497|pdb|3S15|H Chain H, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197509|pdb|3S16|H Chain H, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197521|pdb|3S17|H Chain H, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197533|pdb|3S1M|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197545|pdb|3S1N|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197557|pdb|3S1Q|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197569|pdb|3S1R|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197581|pdb|3S2D|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781202|pdb|3S2H|H Chain H, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251640|pdb|3J0K|H Chain H, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380843|pdb|4A3C|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546297|pdb|4A3B|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546315|pdb|4A3D|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546332|pdb|4A3E|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546349|pdb|4A3F|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546366|pdb|4A3J|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546383|pdb|4A3K|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546399|pdb|4A3L|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546416|pdb|4A3M|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977886|pdb|4A3G|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977901|pdb|4A3I|H Chain H, Rna Polymerase Ii Binary Complex With Dna
gi|380764986|pdb|4A93|H Chain H, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145453|pdb|4BBR|H Chain H, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145466|pdb|4BBS|H Chain H, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|287826|emb|CAA37383.1| RNA polymerase subunit RPB8 [Saccharomyces cerevisiae]
gi|1050776|emb|CAA63187.1| RBP8 [Saccharomyces cerevisiae]
gi|1420518|emb|CAA99443.1| RPB8 [Saccharomyces cerevisiae]
gi|51013625|gb|AAT93106.1| YOR224C [Saccharomyces cerevisiae]
gi|151945313|gb|EDN63556.1| RNA polymerase subunit (common to polymerases I, II and III)
[Saccharomyces cerevisiae YJM789]
gi|190407533|gb|EDV10800.1| 16 kDa RNA polymerase subunit [Saccharomyces cerevisiae RM11-1a]
gi|256269634|gb|EEU04916.1| Rpb8p [Saccharomyces cerevisiae JAY291]
gi|259149703|emb|CAY86507.1| Rpb8p [Saccharomyces cerevisiae EC1118]
gi|285815102|tpg|DAA10995.1| TPA: Rpb8p [Saccharomyces cerevisiae S288c]
gi|323302947|gb|EGA56751.1| Rpb8p [Saccharomyces cerevisiae FostersB]
gi|323307284|gb|EGA60564.1| Rpb8p [Saccharomyces cerevisiae FostersO]
gi|323331546|gb|EGA72961.1| Rpb8p [Saccharomyces cerevisiae AWRI796]
gi|323335438|gb|EGA76724.1| Rpb8p [Saccharomyces cerevisiae Vin13]
gi|323346416|gb|EGA80704.1| Rpb8p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352152|gb|EGA84689.1| Rpb8p [Saccharomyces cerevisiae VL3]
gi|349581380|dbj|GAA26538.1| K7_Rpb8p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365762898|gb|EHN04430.1| Rpb8p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296552|gb|EIW07654.1| Rpb8p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 146
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 15/153 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++DP +++KV RIEA S D L LD+N EL+P+ D T+
Sbjct: 1 MSN-TLFDDIFQVSEVDP--GRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTV 57
Query: 60 ALAHTLNLDGTP-----DTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEI 112
+A +LNL+ TP T + P ++LAD Y+Y+M+G +K E K L A +
Sbjct: 58 TIASSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKF--EEVSKDLIA-V 114
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y S+GGLLM L+G+ +++ + + +LL+R+
Sbjct: 115 YYSFGGLLMRLEGNYRNLNNLK-QENAYLLIRR 146
>gi|410081552|ref|XP_003958355.1| hypothetical protein KAFR_0G01860 [Kazachstania africana CBS 2517]
gi|372464943|emb|CCF59220.1| hypothetical protein KAFR_0G01860 [Kazachstania africana CBS 2517]
Length = 147
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 98/157 (62%), Gaps = 22/157 (14%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHS---QNCDMYMLLDVNSELYPMRVGDKF 57
MSN LF+DIF V ++DP +++KV+RIEA S ++C + LD+N+EL+P++ D+
Sbjct: 1 MSN-TLFDDIFTVSEVDP--GRYNKVARIEATSTTQESCKL--TLDINTELFPVQTTDQL 55
Query: 58 TMALAHTLNLD----GTPDTGYYT-----PGARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
T+ +A +LN+D T D+ + PG R ++AD Y+Y+MHG ++ E K L
Sbjct: 56 TITIASSLNVDSDSGNTEDSATRSWRPPLPGDR-SIADDYDYVMHGTAYRF--EEVNKDL 112
Query: 109 KAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
A +Y S+GGLLM L+G+ ++ + + +LL+R+
Sbjct: 113 IA-VYYSFGGLLMRLEGNYRNLNSLK-QESAYLLIRR 147
>gi|402221880|gb|EJU01948.1| RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 161
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 19/154 (12%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ V FED+F + +DP+GKK+D+VSR+ A S DM ++LD + E++P+R G+ T+ LA
Sbjct: 12 SAVTFEDVFTIHSLDPEGKKYDRVSRLFARSHAFDMDLVLDFHCEIFPLREGETVTVVLA 71
Query: 63 HTLNLDGTPDTGYYTPGARKTLA-----------DKYEYIMHGKLFKIGDEGSGKSLKAE 111
+L Y P +K LA + ++Y+ +GK+++ DEG G+ + A
Sbjct: 72 KSLQ-----KGLYEEPEEKKELASWRVDGPVGLEEYFDYVCYGKVYRF-DEGVGEKVTA- 124
Query: 112 IYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y+S+GGLLM L G + + +LL+R+
Sbjct: 125 -YISFGGLLMTLSGSYRNMGTVTVGAYTYLLVRR 157
>gi|254569534|ref|XP_002491877.1| RNA polymerase subunit ABC14.5, common to RNA polymerases I, II,
and III [Komagataella pastoris GS115]
gi|238031674|emb|CAY69597.1| RNA polymerase subunit ABC14.5, common to RNA polymerases I, II,
and III [Komagataella pastoris GS115]
gi|328351624|emb|CCA38023.1| DNA-directed RNA polymerase II subunit H [Komagataella pastoris CBS
7435]
Length = 145
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 92/150 (61%), Gaps = 17/150 (11%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEA-HSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
LF+DIF V+ +D +++KVSRI + N + + LD+N+E++P+ D T+ LA+
Sbjct: 4 ALFDDIFTVQTVD--NGRYNKVSRIIGISTTNSAIKLTLDINNEMFPVSQDDSLTVTLAN 61
Query: 64 TLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKI--GDEGSGKSLKAEIYVS 115
+L+LDG ++ ++ R K+LAD Y+Y+M G ++K GDE K ++YVS
Sbjct: 62 SLSLDGEDESANFSKSWRPPKPTDKSLADDYDYVMFGTVYKFEEGDED-----KIKVYVS 116
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLLM L+G ++ + D L++L+R+
Sbjct: 117 FGGLLMCLEGGYKSLASLKQDN-LYILIRR 145
>gi|448100087|ref|XP_004199269.1| Piso0_002695 [Millerozyma farinosa CBS 7064]
gi|448103784|ref|XP_004200125.1| Piso0_002695 [Millerozyma farinosa CBS 7064]
gi|359380691|emb|CCE82932.1| Piso0_002695 [Millerozyma farinosa CBS 7064]
gi|359381547|emb|CCE82006.1| Piso0_002695 [Millerozyma farinosa CBS 7064]
Length = 148
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F VE +D +++KV RI A S D+ + LD+NSEL+P+R D T+ LA
Sbjct: 4 ILFEDMFNVESVD--AGRYNKVGRITAQSSTSQDIKITLDINSELFPVRANDSLTIMLAS 61
Query: 64 TLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L + + +G + P K+LAD ++Y+M+G ++K E S + K +Y+S+GGL
Sbjct: 62 SLGNESSMLTASGSWRPPKSNDKSLADDFDYVMYGTVYKF--EESSNNDKMSVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G +S+ + + ++L+R
Sbjct: 120 LMCLEGGYRSLSNLK-QENAYILIR 143
>gi|453081386|gb|EMF09435.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 1429
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 1 MSNIVLFEDIF-VVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTM 59
M++ L+E+ F V ID + +D+V R+ S + + LD+NSELYP+ G+ F M
Sbjct: 1216 MADAQLYEETFQVTTLID---QTYDRVHRVLGTSHDSTTSITLDINSELYPIGNGESFNM 1272
Query: 60 ALAHTLNLDGTPD--TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
+A TLNLDGT D G+ +LAD ++Y+ +GK++K+ D G +K +Y+S+G
Sbjct: 1273 LIASTLNLDGTKDEAQGWRPKNDAPSLADMWDYVCYGKVYKVEDPEDGDRIK--VYISFG 1330
Query: 118 GLLMMLKGDPSYVSHFELD 136
GLLM L G +S +++
Sbjct: 1331 GLLMCLDGPYKKLSPLKIE 1349
>gi|68071555|ref|XP_677691.1| RNA polymerase subunit 8c [Plasmodium berghei strain ANKA]
gi|56497906|emb|CAH98598.1| RNA polymerase subunit 8c, putative [Plasmodium berghei]
Length = 143
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 85/146 (58%), Gaps = 8/146 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +V +K +
Sbjct: 1 MASNILFEDRFVISNVD--NSKFEKVSRIKAKSTGYDAELILDVHSELF--KVEEKKAIY 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
LA N G D + K+L + EYIM G++FK + S + +Y SYGGL+
Sbjct: 57 LALQDNFMGKNDDKTWEQADNKSL-NNIEYIMSGRIFKFEELSSERRT---VYASYGGLM 112
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L D ++ E+D +++LL + +
Sbjct: 113 MALTADKQFIGDLEIDMKIYLLAKNV 138
>gi|302406709|ref|XP_003001190.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261359697|gb|EEY22125.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|346977349|gb|EGY20801.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 152
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 13/151 (8%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
++ LFE+ F + D K+D+V+RI A S + M LD+N EL+P V D + LA
Sbjct: 7 DVTLFEESFTITNFDQ--SKYDRVARISATSADNQTVMTLDINIELFPCAVSDNLHVVLA 64
Query: 63 HTLNLDGTPDT--GYYT------PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
+L DG+ D G+ GA TLAD ++Y+ HGK++K D G+ +KA YV
Sbjct: 65 TSLAHDGSKDEEKGWRDVAKGSGGGAEATLADMFDYVCHGKIYKFEDADDGQIIKA--YV 122
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GG+LM L+G ++ +D +LL++K
Sbjct: 123 SFGGMLMSLEGPYKKLTPLRVDYT-YLLIKK 152
>gi|401623466|gb|EJS41563.1| rpb8p [Saccharomyces arboricola H-6]
Length = 146
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 16/150 (10%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+DIF V ++DP +++KV RIEA S D L LD+N EL+P+ D T+ +A
Sbjct: 4 TLFDDIFQVSEVDP--GRYNKVCRIEATSTTQDQCKLTLDINVELFPVATQDSLTVTIAS 61
Query: 64 TLNLDGTPDTGYYT--------PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
+LNL+ TP PG R ++AD Y+Y+MHG +K E K L A +Y S
Sbjct: 62 SLNLEDTPANDSSVTRSWRPPQPGDR-SIADDYDYVMHGTAYKF--EEVSKDLIA-VYYS 117
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLLM L+G+ +++ + + +LL+R+
Sbjct: 118 FGGLLMRLEGNYRNLNNLK-QENAYLLIRR 146
>gi|326474093|gb|EGD98102.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
gi|326478291|gb|EGE02301.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 146
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 11/151 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + + LDVN+E+YP G+ ++A
Sbjct: 1 MSDPILFEDTFSITSIN--AQKYDRVSRISCTSTDHLITFTLDVNTEIYPCAAGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG + R TLA+ Y+Y+ +GK+++ E S + ++V
Sbjct: 59 LASTLALDGKEEATGERAVWRDVGMGENTLANDYDYVCYGKVYRF--EESSTAGNMAVFV 116
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L G + +S ++D ++LLM+K
Sbjct: 117 SFGGLLLYLDGPYNKLSPLKIDY-VYLLMKK 146
>gi|344303910|gb|EGW34159.1| 16-kDa RNA polymerase subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 148
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 89/145 (61%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F+V+ D +++KV RI HS D+ + LD+NSEL+P++ D T+ LA
Sbjct: 4 ILFEDMFIVDS--TDAARYNKVCRITGHSSTSQDIKITLDINSELFPVKTKDSLTITLAS 61
Query: 64 TLNLDG---TPDTGYYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L + T + + P A ++LAD Y+Y+M+G ++K E + S K +Y+S+GGL
Sbjct: 62 SLGNESSMLTSNGSWRPPKADDRSLADDYDYVMYGTVYKF--EENADSDKMSVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G +S+ + + ++L+R
Sbjct: 120 LMRLEGGYRSLSNLK-QENAYILIR 143
>gi|354546031|emb|CCE42760.1| hypothetical protein CPAR2_204030 [Candida parapsilosis]
Length = 148
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 89/145 (61%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHS-QNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
VLFED+F V+ DP ++++V RI HS + D+ + LD+NSEL+P++ D T+ LA
Sbjct: 4 VLFEDMFTVDSTDP--GRYNRVCRITGHSLTSKDITITLDINSELFPVKENDSLTITLAS 61
Query: 64 TLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
TL + + G + P ++LAD Y+Y+M+G ++K E + + K +Y+S+GGL
Sbjct: 62 TLGNESSMITSNGSWRPPKQGERSLADDYDYVMYGTVYKF--EENADNDKMSVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G +S+ + + ++L+R
Sbjct: 120 LMRLEGGYRSLSNLK-QENAYILIR 143
>gi|448526744|ref|XP_003869388.1| Rpb8 subunit of RNA polymerases I, II, and III [Candida
orthopsilosis Co 90-125]
gi|380353741|emb|CCG23253.1| Rpb8 subunit of RNA polymerases I, II, and III [Candida
orthopsilosis]
Length = 148
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 89/145 (61%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHS-QNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
VLFED+F V+ DP ++++V RI HS + D+ + LD+NSEL+P++ D T+ LA
Sbjct: 4 VLFEDMFAVDSTDP--GRYNRVCRITGHSLTSKDITITLDINSELFPVKENDSLTITLAS 61
Query: 64 TLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
TL + + G + P ++LAD Y+Y+M+G ++K E + + K +Y+S+GGL
Sbjct: 62 TLGNESSMITSNGSWRPPKQGERSLADDYDYVMYGTVYKF--EENADNDKMSVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G +S+ + + ++L+R
Sbjct: 120 LMRLEGGYRSLSNLK-QENAYILIR 143
>gi|321262082|ref|XP_003195760.1| DNA-directed RNA polymerases I, II and III 17.1 kDapolypeptide
[Cryptococcus gattii WM276]
gi|317462234|gb|ADV23973.1| DNA-directed RNA polymerases I, II and III 17.1 kDapolypeptide,
putative [Cryptococcus gattii WM276]
Length = 153
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 34/164 (20%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F+D F V+ +D DGKKFD+VSRI A S + M + LD+ +ELYP+ + FT+ L
Sbjct: 4 SSNIIFDDRFTVDTVDKDGKKFDRVSRITATSHSLSMSLTLDIANELYPLEPSETFTLTL 63
Query: 62 AHTL---------NLDGTPDTGYYTPGARKT-----------LADKYEYIMHGKLFKIGD 101
A +L N DG D G R+ LA+ Y+Y+M+GK
Sbjct: 64 ARSLVPSELEALDNADG--DEGEDGNEVRRVKRELWRSNEQGLAEDYDYVMYGK------ 115
Query: 102 EGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+ Y S+GGLLM L+G +++ + + ++LLMRK
Sbjct: 116 ------TGSTAYFSFGGLLMALRGSYRHLAGVVVGENVYLLMRK 153
>gi|156086062|ref|XP_001610440.1| RNA polymerase subunit 8c [Babesia bovis T2Bo]
gi|154797693|gb|EDO06872.1| RNA polymerase subunit 8c, putative [Babesia bovis]
Length = 145
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S +FED FVV ID KF++VSRI A S D +LLD+NS+++P+ V + +
Sbjct: 3 SATCVFEDRFVVRSID--NSKFERVSRITAKSTGFDAELLLDINSDIFPVTVKSMLHILM 60
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLM 121
+ L G+ D +L YEY M+GK+FK D S IY S+GGLLM
Sbjct: 61 TNNLLPSGS-DVNLSDYSDLPSLMRDYEYAMYGKIFKFEDVSSETR---TIYASFGGLLM 116
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L D ++ +LD R++L+ R++
Sbjct: 117 SLTADKQVIADLDLDMRIYLMARRI 141
>gi|340960352|gb|EGS21533.1| DNA-directed RNA polymerases I, II, and III-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 154
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 90/153 (58%), Gaps = 14/153 (9%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ LFED F VE++ K+D+V RI S + + M LD+N EL+P +V D+ +AL
Sbjct: 6 SDAQLFEDHFRVERLSE--PKYDRVDRIYCKSIDGSIDMSLDINKELFPCKVDDELHVAL 63
Query: 62 AHTLNLDGTPDTGYYTPGAR---------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEI 112
A +L+ DG D G R TLAD ++Y+ +GK++K D G+++KA
Sbjct: 64 ASSLHYDGHRDEDETRQGWRDLAKAGSSESTLADMFDYVCYGKIYKFEDAEDGQNIKA-- 121
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y+S+GGLLM L+G ++ +D ++LL+R+
Sbjct: 122 YISFGGLLMSLEGPYKKLTPLRVDY-VYLLVRR 153
>gi|452978597|gb|EME78360.1| hypothetical protein MYCFIDRAFT_37035 [Pseudocercospora fijiensis
CIRAD86]
Length = 143
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 88/148 (59%), Gaps = 8/148 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ L+E+ F + + +D+V R+ S + + LD+NSELYP+ D F M
Sbjct: 1 MADAQLYEETFQCTTLITE--TYDRVHRVLGTSHDNTTSITLDINSELYPIGTQDSFNML 58
Query: 61 LAHTLNLDGTPD---TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
+A TLNLDGT + TG+ +LAD ++Y+ +GK++K+ D G +K +YVS+G
Sbjct: 59 IASTLNLDGTKEEAATGWRPRNTEPSLADMWDYVCYGKVYKVEDPEDGDRIK--VYVSFG 116
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GLL+ L G +S ++ + +++L++K
Sbjct: 117 GLLLCLDGPYKKLSPLKI-EYVYMLLKK 143
>gi|70950387|ref|XP_744521.1| RNA polymerase subunit 8c [Plasmodium chabaudi chabaudi]
gi|56524509|emb|CAH79735.1| RNA polymerase subunit 8c, putative [Plasmodium chabaudi chabaudi]
Length = 143
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 85/146 (58%), Gaps = 8/146 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +V +K +
Sbjct: 1 MASNILFEDRFVISNVD--NSKFEKVSRIKAKSTGYDAELILDVHSELF--KVEEKKAIY 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
LA N G D + K+L + EYIM G++FK + S + +Y SYGGL+
Sbjct: 57 LALQDNFMGYSDDKTWEQTDNKSL-NNIEYIMSGRIFKFEELSSERRT---VYASYGGLM 112
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L D ++ E+D +++LL + +
Sbjct: 113 MALTADKQFIGDLEIDMKIYLLAKNV 138
>gi|317025199|ref|XP_003188524.1| UDP-glucose 4-epimerase Gal10 [Aspergillus niger CBS 513.88]
Length = 110
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 73/112 (65%), Gaps = 11/112 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+VSR+ +S + + LDVNSELYP VG+ MA
Sbjct: 1 MSDPVLFEDTFTITTINS--QKYDRVSRLSCNSTDTLSHFTLDVNSELYPCVVGESVNMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGK 106
LA TL+LDG D+G + G R +TLA+ Y+Y+ HGK+++ +EGS +
Sbjct: 59 LASTLSLDGKDDSG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGSSQ 107
>gi|302496637|ref|XP_003010319.1| hypothetical protein ARB_03020 [Arthroderma benhamiae CBS 112371]
gi|302658527|ref|XP_003020966.1| hypothetical protein TRV_04927 [Trichophyton verrucosum HKI 0517]
gi|327299538|ref|XP_003234462.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|291173862|gb|EFE29679.1| hypothetical protein ARB_03020 [Arthroderma benhamiae CBS 112371]
gi|291184839|gb|EFE40348.1| hypothetical protein TRV_04927 [Trichophyton verrucosum HKI 0517]
gi|326463356|gb|EGD88809.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 146
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 11/151 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + + LDVN+E+YP G+ ++A
Sbjct: 1 MSDPILFEDTFSITSIN--AQKYDRVSRISCTSTDHLITFTLDVNTEIYPCAPGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG + R TLA+ Y+Y+ +GK+++ E S + ++V
Sbjct: 59 LASTLALDGKEEATGERAVWRDVGMGENTLANDYDYVCYGKVYRF--EESSTAGNMAVFV 116
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L G + +S ++D ++LLM+K
Sbjct: 117 SFGGLLLYLDGPYNKLSPLKIDY-VYLLMKK 146
>gi|444323828|ref|XP_004182554.1| hypothetical protein TBLA_0J00350 [Tetrapisispora blattae CBS 6284]
gi|387515602|emb|CCH63035.1| hypothetical protein TBLA_0J00350 [Tetrapisispora blattae CBS 6284]
Length = 147
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 96/154 (62%), Gaps = 16/154 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMY-MLLDVNSELYPMRVGDKFTM 59
MSN VLF+DIF V ++DP +++KVSRIEA S D + LD+N++L+P++ ++ T+
Sbjct: 1 MSN-VLFDDIFSVSEVDP--GRYNKVSRIEATSTTQDQCKITLDINTDLFPVQPQEQLTI 57
Query: 60 ALAHTLNLDGTPD------TGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAE 111
+A +L+ D + T + P ++LAD Y+Y+MHG +K E K L A
Sbjct: 58 TIASSLSFDDDSENKNQSVTKSWRPPQPNERSLADDYDYVMHGVAYKF--EEVSKELIA- 114
Query: 112 IYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+Y+S+GGLLM L+G+ +++ + + +LL+R+
Sbjct: 115 VYISFGGLLMRLEGNYRTLNNLK-QENAYLLIRR 147
>gi|365758315|gb|EHN00165.1| Rpb8p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 212
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 17/154 (11%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V +DP +++KV RIEA S D L LD+N EL+P+ D T+
Sbjct: 67 MSN-TLFDDIFQVSDVDP--GRYNKVCRIEAASTTHDQCKLTLDINVELFPVAAQDSLTV 123
Query: 60 ALAHTLNLDGTPDTGYYT--------PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAE 111
+A +LNL+ TP PG R +LAD Y+Y+M+G +K E K L A
Sbjct: 124 TIASSLNLEDTPANDSSATRSWRPPQPGDR-SLADDYDYVMYGTAYKF--EEVSKDLIA- 179
Query: 112 IYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+Y S+GGLLM L+G+ +++ + + +LL+R+
Sbjct: 180 VYYSFGGLLMRLEGNYRNLNNLK-QENAYLLIRR 212
>gi|71020753|ref|XP_760607.1| hypothetical protein UM04460.1 [Ustilago maydis 521]
gi|46100495|gb|EAK85728.1| hypothetical protein UM04460.1 [Ustilago maydis 521]
Length = 161
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 33/164 (20%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+ FVV +IDPDGKKFD+VSRI A S + DM + +D+ ++++P+ G + T LA TL
Sbjct: 6 LFDTQFVVSQIDPDGKKFDRVSRIIATSPSLDMTLSIDIATDIWPVTEGQQLTFQLASTL 65
Query: 66 ----------NLDGTPDTGYYT-----------PGARKTLADKYEYIMHGKLF----KIG 100
+DG PG +AD ++Y+M+GK++ K+
Sbjct: 66 KKETSSAKPDGVDGETQDAAAQAAERDAWRLDQPG-NGGIADDFDYVMYGKIYRYDEKVA 124
Query: 101 DEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
DE +Y S+GGL+M L G+ ++S+ + ++LLMR
Sbjct: 125 DE-------VTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR 161
>gi|340381938|ref|XP_003389478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Amphimedon queenslandica]
Length = 211
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 91/149 (61%), Gaps = 15/149 (10%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCD-MYMLLDVNSELYPMRVGDKFTMALAHT 64
+FE F ++ I+ KKF++VSR+ +N + + ++LD+N++LYPM VGD L T
Sbjct: 68 VFESFFQIKDIE---KKFERVSRLFCEGENFNKIQLILDINTQLYPMNVGDNIHFLLTTT 124
Query: 65 LNLDGT---PDTGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
L D TG + T GA +LAD ++YIM+GK++++ EG+ SL +YVS+G
Sbjct: 125 LGADHEDFPTVTGTHWSRVTDGATSSLADTFQYIMYGKIYRL--EGAEDSLS--VYVSFG 180
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
GLLM LKG+ +D ++LL++K+
Sbjct: 181 GLLMRLKGNNLQGLMMMMDMNVYLLLKKM 209
>gi|303312733|ref|XP_003066378.1| RNA polymerase Rpb8 family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240106040|gb|EER24233.1| RNA polymerase Rpb8 family protein [Coccidioides posadasii C735
delta SOWgp]
gi|320032247|gb|EFW14202.1| DNA-directed RNA polymerase I [Coccidioides posadasii str.
Silveira]
Length = 146
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 19/155 (12%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + LDVNSELYP G+ ++A
Sbjct: 1 MSDPILFEDTFTITSIN--AQKYDRVSRISCTSTDQLTTFTLDVNSELYPCAPGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK----------TLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LA TL LDG D G G R TLA+ Y+Y+ +GK+++ D + ++
Sbjct: 59 LASTLALDG-KDEG---AGGRAVWRDVGMGETTLANDYDYVCYGKVYRFEDSSTAGNMA- 113
Query: 111 EIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
++VS+GGLL+ L G ++ +D ++LL++K
Sbjct: 114 -VFVSFGGLLLYLDGPYKKLNPLRIDY-VYLLIKK 146
>gi|358378123|gb|EHK15805.1| hypothetical protein TRIVIDRAFT_184264 [Trichoderma virens Gv29-8]
Length = 151
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V + D K+D+V+RI S + M LD+N EL+P V D + L
Sbjct: 8 DATLFEESFTVTEYDQ--SKYDRVARISCTSSDSQTVMTLDINIELFPCSVSDTLHVVLT 65
Query: 63 HTLNLDGTP--DTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
TL+ DGT D G+ G A TLAD Y+Y+ +GK++K + G ++ A YVS+
Sbjct: 66 TTLSPDGTKEDDKGWRDVGKAGDAPATLADLYDYVCYGKIYKFEETFDGNTINA--YVSF 123
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMR 144
GGLLM L+G ++ +D L+ R
Sbjct: 124 GGLLMQLQGPVKKLTPLRVDNVYLLVKR 151
>gi|401840478|gb|EJT43283.1| RPB8-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 146
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 17/154 (11%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V +DP +++KV RIEA S D L LD+N EL+P+ D T+
Sbjct: 1 MSN-TLFDDIFQVSDVDP--GRYNKVCRIEAASTTHDQCKLTLDINVELFPVTAQDSLTV 57
Query: 60 ALAHTLNLDGTPDTGYYT--------PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAE 111
+A +LNL+ TP PG R +LAD Y+Y+M+G +K E K L A
Sbjct: 58 TIASSLNLEDTPANDSSATRSWRPPQPGDR-SLADDYDYVMYGTAYKF--EEVSKDLIA- 113
Query: 112 IYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+Y S+GGLLM L+G+ +++ + + +LL+R+
Sbjct: 114 VYYSFGGLLMRLEGNYRNLNNLK-QENAYLLIRR 146
>gi|315052670|ref|XP_003175709.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311341024|gb|EFR00227.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 146
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 11/151 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + + LDVN+E+YP G+ ++A
Sbjct: 1 MSDPILFEDTFSITSIN--AQKYDRVSRISCTSTDHLITFTLDVNTEIYPCAPGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG + R TLA+ Y+Y+ +GK+++ E S + +++
Sbjct: 59 LASTLALDGKEEATGERAVWRDVGMGENTLANDYDYVCYGKVYRF--EESSTAGNMAVFI 116
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L G + +S ++D ++LLM+K
Sbjct: 117 SFGGLLLYLDGPYNKLSPLKIDY-VYLLMKK 146
>gi|402079717|gb|EJT74982.1| UDP-glucose 4-epimerase Gal10 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 155
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 88/147 (59%), Gaps = 13/147 (8%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCD---MYMLLDVNSELYPMRVGDKFTMALA 62
LFE +F V +D K+D+V+RI A S M M LD+N+EL+PM GD F + LA
Sbjct: 10 LFEGVFKVTHVD--AVKYDRVARITATSDAASADPMDMTLDINTELFPMSEGDGFRVVLA 67
Query: 63 HTLNLDGTPD--TGYYTP---GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
+L LDG+ D G+ G TLAD ++Y+ +GK+++ D +G+ +KA Y+S+G
Sbjct: 68 TSLALDGSKDEEKGWRDASKLGGPPTLADNFDYVCYGKVYRFEDSKNGEQIKA--YMSFG 125
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMR 144
GLLM L G ++ +D ++LL++
Sbjct: 126 GLLMCLNGPYKKLTPLRVDY-VYLLVK 151
>gi|241958630|ref|XP_002422034.1| DNA-directed RNA polymerase subunit common to I, II, and III,
putative [Candida dubliniensis CD36]
gi|223645379|emb|CAX40035.1| DNA-directed RNA polymerase subunit common to I, II, and III,
putative [Candida dubliniensis CD36]
Length = 148
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 89/145 (61%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F+V+ DP +++KVSRI HS D+ + LD+N EL+P++ D T+ LA
Sbjct: 4 ILFEDMFIVDSTDP--GRYNKVSRITGHSSTSKDITITLDINKELFPVQNHDSLTITLAS 61
Query: 64 TLNLDGT--PDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L + + G + P K+LAD Y+Y+M+G ++K E + + K +Y+S+GGL
Sbjct: 62 SLGNESSMITSNGSWRPPKFDDKSLADDYDYVMYGTIYKF--EENTDNDKMAVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G +S+ + + ++L+R
Sbjct: 120 LMRLEGGYRSLSNLK-QENAYILIR 143
>gi|443897132|dbj|GAC74474.1| GTP-binding ADP-ribosylation factor-like protein yARL3 [Pseudozyma
antarctica T-34]
Length = 160
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 32/163 (19%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+ FVV +IDPDGKKFD+VSRI A S + +M + +D+ ++++P+ G + T LA TL
Sbjct: 6 LFDTQFVVNQIDPDGKKFDRVSRIIASSPSLEMSLSIDIATDVWPVSEGQQLTFQLASTL 65
Query: 66 -------NLDGTPDTGYYT-------------PGARKTLADKYEYIMHGKLF----KIGD 101
+DG PG +AD ++Y+M+GK++ K+ D
Sbjct: 66 KKEAAGTKVDGADGEQDAAAQAAERDAWRLDQPG-NGGIADDFDYVMYGKIYRYDEKVAD 124
Query: 102 EGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
E +Y S+GGL+M L G+ ++S+ + ++LLMR
Sbjct: 125 E-------VTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR 160
>gi|367003018|ref|XP_003686243.1| hypothetical protein TPHA_0F03280 [Tetrapisispora phaffii CBS 4417]
gi|357524543|emb|CCE63809.1| hypothetical protein TPHA_0F03280 [Tetrapisispora phaffii CBS 4417]
Length = 144
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 94/147 (63%), Gaps = 12/147 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+DIFV+ +DP +++KVSRIEA S + + L LD+N++L+P+ + D+ T+A+A
Sbjct: 4 TLFDDIFVISDVDP--GRYNKVSRIEASSTSQEQTKLTLDINTDLFPVNLKDQLTIAIAS 61
Query: 64 TLNLDGTPDT----GYYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGG 118
+L+ DG+ ++ + P ++LAD Y+Y+M+G +K E K + IY S+GG
Sbjct: 62 SLSTDGSVNSSDNKSWRLPRPNERSLADDYDYVMYGTAYKF--EEVSKDM-ITIYYSFGG 118
Query: 119 LLMMLKGDPSYVSHFELDQRLFLLMRK 145
LLM L+G+ +++ + + +LL+R+
Sbjct: 119 LLMRLEGNYRKLNNLK-QENAYLLIRR 144
>gi|310798250|gb|EFQ33143.1| RNA polymerase Rpb8 [Glomerella graminicola M1.001]
Length = 150
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
++ LFE+ F V D K+D+V+RI A S + M LD+N EL+P V D + LA
Sbjct: 6 DVTLFEESFTVTNYDQ--SKYDRVARISATSTDNQTLMTLDINIELFPTSVSDSLHVVLA 63
Query: 63 HTLNLDGTPD--TGY--YTPGARK---TLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
+L DG+ D G+ T G + TLAD ++Y+ +GK++K D G+++KA YVS
Sbjct: 64 TSLAHDGSKDDEKGWRDVTKGNQDREPTLADMFDYVCYGKIYKFEDADDGQTIKA--YVS 121
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLLM L+G ++ +D ++LL++K
Sbjct: 122 FGGLLMSLEGPYKKLTPLRVDY-VYLLIKK 150
>gi|358254135|dbj|GAA54160.1| DNA-directed RNA polymerases I II and III subunit RPABC3
[Clonorchis sinensis]
gi|358255898|dbj|GAA57517.1| DNA-directed RNA polymerases I II and III subunit RPABC3
[Clonorchis sinensis]
Length = 156
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 12/153 (7%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
L EDIF V+ +D DGKKFDKVSR+ S++ M ++LD+++ +Y + GDKF M L
Sbjct: 3 ALLEDIFDVKDVDKDGKKFDKVSRLFCESESFKMGLILDIHALIYRLVKGDKFRMVLTKN 62
Query: 65 LNLDGTPDTGYYTPG----------ARKTLADKYEYIMHGKLFKIGDEGSG-KSLKAEIY 113
L D D A +A+ ++Y+ +GK+++I SG + + Y
Sbjct: 63 LLNDMITDAEDDDEDDAAEETDERLANSKMAE-FDYVCYGKIYRIEAHDSGVDASRLSCY 121
Query: 114 VSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
VS+GGLLM L GD S + F + + L+L+++KL
Sbjct: 122 VSFGGLLMQLTGDASNLQGFRVGKHLYLMIKKL 154
>gi|380486027|emb|CCF38977.1| RNA polymerase Rpb8 [Colletotrichum higginsianum]
Length = 150
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
++ LFE+ F V D K+D+V+RI A S + M LD+N EL+P V D + LA
Sbjct: 6 DVTLFEESFTVTNYDQ--SKYDRVARISATSTDNQTLMTLDINIELFPASVSDSLHVVLA 63
Query: 63 HTLNLDGTPD--TGY--YTPGARK---TLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
+L DG+ D G+ T G + TLAD ++Y+ +GK++K D G+++KA YVS
Sbjct: 64 TSLAHDGSKDDEKGWRDVTKGNQDREPTLADMFDYVCYGKIYKFEDADDGQTIKA--YVS 121
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLLM L+G ++ +D ++LL++K
Sbjct: 122 FGGLLMSLEGPYKKLTPLRVDY-VYLLIKK 150
>gi|403213497|emb|CCK67999.1| hypothetical protein KNAG_0A03110 [Kazachstania naganishii CBS
8797]
Length = 146
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 94/153 (61%), Gaps = 15/153 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++DP +++KV RIEA S + L LD+N+EL+P+ V ++ T+
Sbjct: 1 MSN-ALFDDIFSVNEVDP--ARYNKVCRIEAQSTTQEQCKLTLDLNTELFPVSVNEQLTV 57
Query: 60 ALAHTLNLDGTPDTG-----YYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAEI 112
LA +L+LD G + P + ++LAD Y+Y+M+G ++ E K L A +
Sbjct: 58 TLASSLSLDAQGTAGDTASRSWRPPQQGDRSLADDYDYVMYGTAYRF--EEVSKELIA-V 114
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y S+GGLL+ L+G+ +++ + + +LL+R+
Sbjct: 115 YYSFGGLLLRLEGNYRHLNSLK-QENAYLLIRR 146
>gi|342885068|gb|EGU85177.1| hypothetical protein FOXB_04292 [Fusarium oxysporum Fo5176]
Length = 148
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 11/149 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V + D K+D+V+RI S + M LD+N EL+P V D + L+
Sbjct: 5 DATLFEESFTVTEYDQ--SKYDRVARISCTSSDSQTVMTLDINIELFPCAVSDTLHVVLS 62
Query: 63 HTLNLDGTP--DTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
TL+LDG+ + G+ G A T AD Y+Y+ HGK++K + G ++ A Y S+
Sbjct: 63 TTLSLDGSKEDEKGWRDVGKGGDAPATAADLYDYVCHGKIYKFEETFDGNTINA--YCSF 120
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLLM L+G ++ +D ++LL++K
Sbjct: 121 GGLLMSLQGPIKKLTPLRVDN-VYLLVKK 148
>gi|342185908|emb|CCC95393.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
Length = 149
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+ ED F V +PDG + +VSRI SQ ++ + DVN+E +P+ VGD+ T+ LA++
Sbjct: 6 VILEDTFTVTARNPDGVVYSRVSRIHCKSQGRNLTITSDVNTEEFPLVVGDRLTITLANS 65
Query: 65 LNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMM 122
+ L + +Y R T +Y MHG+++ E SL+ +++S GGLL
Sbjct: 66 IELQDQAGSKHYDQSVYHRNTRLQDCDYAMHGRVYS--HEVDESSLEVRVHISCGGLLTQ 123
Query: 123 LKGDPSYVSHFELDQRLFLLMR 144
+ G P + + +++LM+
Sbjct: 124 VIGSPQSLRDIHYNSNIYILMK 145
>gi|340521877|gb|EGR52111.1| predicted protein [Trichoderma reesei QM6a]
Length = 151
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V D D K+D+V+RI S + M LD+N EL+P V D + L
Sbjct: 8 DATLFEESFTV--TDYDQSKYDRVARISCTSSDSQTVMTLDINIELFPCSVSDTLHVVLT 65
Query: 63 HTLNLDGTP--DTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
TL+ DGT D G+ G A TLAD Y+Y+ +GK++K + G ++ A YVS+
Sbjct: 66 TTLSPDGTKEDDKGWRDVGKAGDAPATLADLYDYVCYGKIYKFEETFDGNTINA--YVSF 123
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMR 144
GGLLM L+G ++ +D L+ R
Sbjct: 124 GGLLMSLQGPVKKLTPLRVDYVYLLVKR 151
>gi|156841640|ref|XP_001644192.1| hypothetical protein Kpol_1059p24 [Vanderwaltozyma polyspora DSM
70294]
gi|156114829|gb|EDO16334.1| hypothetical protein Kpol_1059p24 [Vanderwaltozyma polyspora DSM
70294]
Length = 146
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 94/153 (61%), Gaps = 15/153 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V +DP +++KVSRIEA S + L LD+N++L+P+ V D+ T+
Sbjct: 1 MSN-TLFDDIFSVSDVDP--GRYNKVSRIEASSTTQEQCKLTLDINTDLFPVSVQDQITV 57
Query: 60 ALAHTLNLDGTPDT------GYYTPGAR-KTLADKYEYIMHGKLFKIGDEGSGKSLKAEI 112
A+ +L++DG + + P ++LAD Y+Y+M+G +K E K L A I
Sbjct: 58 AVVTSLSVDGNGENDNSAGRSWRPPQPNERSLADDYDYVMYGTAYKF--EEVSKDLIA-I 114
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y S+GGLLM L+G+ +++ + + +LL+R+
Sbjct: 115 YYSFGGLLMRLEGNYRNLNNLK-QENAYLLIRR 146
>gi|294660089|ref|XP_002777720.1| DEHA2G22902p [Debaryomyces hansenii CBS767]
gi|199434459|emb|CAR66031.1| DEHA2G22902p [Debaryomyces hansenii CBS767]
Length = 148
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 88/145 (60%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F V+ +D +++KVSRI S D+ + LD+NSEL+P+R D T+ LA
Sbjct: 4 ILFEDMFNVDSVD--SARYNKVSRITGQSSTSQDIKITLDINSELFPVRDNDSLTIMLAS 61
Query: 64 TLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L + + G + P ++LAD Y+Y+M+G ++K E + + K +Y+S+GGL
Sbjct: 62 SLGNESSMLTSNGSWRPPKSNDRSLADDYDYVMYGTVYKF--EENSNNDKMSVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G +S+ + + ++L+R
Sbjct: 120 LMCLEGGYRSLSNLK-QENAYILIR 143
>gi|145527078|ref|XP_001449339.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416927|emb|CAK81942.1| unnamed protein product [Paramecium tetraurelia]
Length = 148
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
L ++ F VE ID G+ F +VSRI+ S++ ++ M LDVN ++YP+ G ++ + + +L
Sbjct: 8 LIDEYFKVEDIDQAGQSFKRVSRIKCKSKSGEVDMELDVNIDIYPIDKGSEYRVLIVRSL 67
Query: 66 NLDGTPDTGYYTPGARKT---LADKYEYIMHGKLFK-IGDEGSGKSLKAEIYVSYGGLLM 121
+ D G Y P + L +K++Y M G++FK I D+ ++ S+GGL++
Sbjct: 68 GISQEMDQGKYKPEFSQIDNELLEKFQYAMFGRVFKMIKDQNK----MINVFASFGGLIL 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRK 145
L G + F DQR++LLMRK
Sbjct: 124 KLSGKSEELDKFADDQRVYLLMRK 147
>gi|46116862|ref|XP_384449.1| hypothetical protein FG04273.1 [Gibberella zeae PH-1]
gi|408389938|gb|EKJ69357.1| hypothetical protein FPSE_10470 [Fusarium pseudograminearum CS3096]
Length = 148
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 11/149 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V ++ D K+D+V+RI S + M LD+N EL+P GD + L
Sbjct: 5 DATLFEESFTV--MEYDQSKYDRVARIHCTSADSQTIMSLDINIELFPCVRGDSLHVVLT 62
Query: 63 HTLNLDGT--PDTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
TL LDG+ + G+ G A T+AD Y+Y+ HGK++K + G ++ A YVS+
Sbjct: 63 TTLALDGSKEEEKGWRDVGKGGDAPATIADLYDYVCHGKIYKFEETFDGNTINA--YVSF 120
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLLM L+G ++ +D ++LL++K
Sbjct: 121 GGLLMSLQGPVKKLTPLRVDN-VYLLVKK 148
>gi|367009268|ref|XP_003679135.1| hypothetical protein TDEL_0A05920 [Torulaspora delbrueckii]
gi|359746792|emb|CCE89924.1| hypothetical protein TDEL_0A05920 [Torulaspora delbrueckii]
Length = 145
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 90/148 (60%), Gaps = 13/148 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+DIF V +DP +++KVSRIEA S D L LDVN++L+P+++ ++ T+ +A
Sbjct: 4 TLFDDIFAVTDVDP--GRYNKVSRIEASSTTQDQCKLSLDVNTDLFPVQLQEQLTVTIAS 61
Query: 64 TLNLDGTPDTGYYT------PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
+L +D + T P ++LAD Y+Y+M+G +K E K L A +Y S+G
Sbjct: 62 SLGVDEGANDSSATRSWRPPPPGERSLADDYDYVMYGTAYKF--EEVSKELIA-VYYSFG 118
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GLLM L+G+ +++ + + +LL+R+
Sbjct: 119 GLLMRLEGNYRSLNNVK-QENAYLLIRR 145
>gi|154422638|ref|XP_001584331.1| RNA polymerase Rpb8 family protein [Trichomonas vaginalis G3]
gi|121918577|gb|EAY23345.1| RNA polymerase Rpb8 family protein [Trichomonas vaginalis G3]
Length = 146
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 11 FVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLD-G 69
F +DPDGK+FD VSRI+A + D ++LD N +Y ++ F + ++ L+ D
Sbjct: 8 FRCTAVDPDGKQFDDVSRIKATTDEGDYELVLDYNCFIYEIKQDQLFQLNISTQLHSDEA 67
Query: 70 TPDTGYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDP 127
+ ++ P TLA YEYIMHGK++ E ++ +A +YVSYGGLLM L GD
Sbjct: 68 SRAEEHWHPSIVENSTLAASYEYIMHGKVYNY--EEQPETNRATVYVSYGGLLMSLTGDR 125
Query: 128 SYVSHFELDQRLFLLMRK 145
+ ++ + + ++LL+ +
Sbjct: 126 NTIAGIQRGKEVYLLISR 143
>gi|399216603|emb|CCF73290.1| unnamed protein product [Babesia microti strain RI]
Length = 140
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 9/144 (6%)
Query: 4 IVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
+VLFED F+V ID K+++V+RI A S D ++LDVNS+L+P+R + L +
Sbjct: 1 MVLFEDRFIVRGID--NSKYERVTRITAKSTGFDAEIVLDVNSDLFPVRENTTLHILLTN 58
Query: 64 TLNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMM 122
L+ T D+G +L YEY M+GK+FK + S + +Y S+GGLLM
Sbjct: 59 NLS---TGDSGNIEEINDFGSLVGNYEYAMYGKIFKFEEISSERRC---LYTSFGGLLMS 112
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
L D + ELD R++LL +++
Sbjct: 113 LTADKQVILDLELDMRIYLLAQRV 136
>gi|68490134|ref|XP_711116.1| hypothetical protein CaO19.13691 [Candida albicans SC5314]
gi|68490169|ref|XP_711099.1| hypothetical protein CaO19.6314 [Candida albicans SC5314]
gi|46432375|gb|EAK91860.1| hypothetical protein CaO19.6314 [Candida albicans SC5314]
gi|46432393|gb|EAK91877.1| hypothetical protein CaO19.13691 [Candida albicans SC5314]
gi|238879935|gb|EEQ43573.1| DNA-directed RNA polymerases I [Candida albicans WO-1]
Length = 148
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 88/145 (60%), Gaps = 10/145 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F+V+ DP +++KV RI HS D+ + LD+N EL+P++ D T+ LA
Sbjct: 4 ILFEDMFIVDSTDP--GRYNKVCRITGHSSTSKDITITLDINKELFPVQNHDSLTITLAS 61
Query: 64 TLNLDGT--PDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
+L + + G + P ++LAD Y+Y+M+G ++K E + + K +Y+S+GGL
Sbjct: 62 SLGNESSMITSNGSWRPPKPDERSLADDYDYVMYGTVYKF--EENADNDKMAVYISFGGL 119
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMR 144
LM L+G +S+ + + ++L+R
Sbjct: 120 LMRLEGGYRSLSNLK-QENAYILIR 143
>gi|400600054|gb|EJP67745.1| DNA-directed RNA polymerases I [Beauveria bassiana ARSEF 2860]
Length = 152
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 11/149 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F + D D K+D+V+RI S + M+LD+N+EL+P D + L+
Sbjct: 9 DATLFEESFTI--TDFDQSKYDRVARISCTSSDSQTVMVLDINTELFPCAESDSLHVVLS 66
Query: 63 HTLNLDGT--PDTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
TL+ DG D G+ G A TLAD Y+Y+ +GK++K + G ++ A YVS+
Sbjct: 67 TTLSPDGVRDDDKGWRDVGKGGDAPATLADLYDYVCYGKIYKFEETFDGATINA--YVSF 124
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLLM L+G ++ +D ++LL++K
Sbjct: 125 GGLLMSLQGPVKKLTPLRVDN-VYLLIKK 152
>gi|346326144|gb|EGX95740.1| UDP-glucose 4-epimerase Gal10 [Cordyceps militaris CM01]
Length = 152
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 11/149 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F + + D K+D+V+RI S + M+LD+N EL+P V D + L+
Sbjct: 9 DATLFEESFTITEYDQ--SKYDRVARISCTSGDSQTVMVLDINMELFPCAVSDSLHVVLS 66
Query: 63 HTLNLDGT--PDTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
TL+ DG D G+ G A TLAD Y+Y+ +GK++K + G ++ A YVS+
Sbjct: 67 TTLSPDGARDDDKGWRDVGKGGDAPATLADLYDYVCYGKIYKFEETFDGATINA--YVSF 124
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GGLLM L+G ++ +D ++LL++K
Sbjct: 125 GGLLMSLQGPVKKLTPLRVDN-VYLLIKK 152
>gi|384498418|gb|EIE88909.1| hypothetical protein RO3G_13620 [Rhizopus delemar RA 99-880]
Length = 120
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 10/110 (9%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA---- 60
+LF+DIF ++ +DP GK+FD+VSR+ A S+N +M + LD NSE+YP+ VG+KF+
Sbjct: 6 ILFQDIFDIKDLDPQGKRFDRVSRLVARSENYEMDLTLDFNSEIYPLNVGEKFSFVLASS 65
Query: 61 -----LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
A T ++ PG R L+D+YEY+M GK++K D G
Sbjct: 66 LSLEASASTSGVEKRESWRERAPGER-DLSDEYEYVMFGKVYKFEDSNKG 114
>gi|401408263|ref|XP_003883580.1| UDP-glucose 4-epimerase Gal10, related [Neospora caninum Liverpool]
gi|325117997|emb|CBZ53548.1| UDP-glucose 4-epimerase Gal10, related [Neospora caninum Liverpool]
Length = 150
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS LFED F V +D KF++VSR++ S D + LDVNS+L+P V +K +
Sbjct: 1 MSIPCLFEDRFEVRSVD--CSKFERVSRLKGKSSGFDADIQLDVNSDLFP--VKEKQRLY 56
Query: 61 LAHTLNLDGTPD-----TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
+ T NL T D T +T A +Y+Y+M+GK+F+I + S + +Y S
Sbjct: 57 IGITNNLHSTSDARKDDTAAWTEPA--AYLKEYDYVMYGKIFRIEECSSERRT---LYAS 111
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLLM L D V ELD R+++L+R+
Sbjct: 112 FGGLLMALTADKHVVGDLELDMRIYILIRR 141
>gi|254583838|ref|XP_002497487.1| ZYRO0F06644p [Zygosaccharomyces rouxii]
gi|238940380|emb|CAR28554.1| ZYRO0F06644p [Zygosaccharomyces rouxii]
Length = 145
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 95/155 (61%), Gaps = 20/155 (12%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHS---QNCDMYMLLDVNSELYPMRVGDKF 57
MSN LF+D+F+V +DP K+++V+RIEA S ++C + LDVN++L+P++ G++
Sbjct: 1 MSN-TLFDDVFLVADVDP--GKYNRVARIEATSTTQEHCKL--ALDVNTDLFPVQTGEQV 55
Query: 58 TMALAHTLNLDGTPDTGYYT-------PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
T +A +L L+ + T PG R +LAD Y+Y+MHG ++ E L A
Sbjct: 56 TATIASSLELEKNVNDPSATRSWRPPQPGER-SLADDYDYVMHGTAYRF--EEVSNDLIA 112
Query: 111 EIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+Y S+GGLLM L+G+ +++ + + FLL+R+
Sbjct: 113 -VYYSFGGLLMRLEGNYRSLNNLK-QENAFLLLRR 145
>gi|403414230|emb|CCM00930.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 27/164 (16%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N ELYP++ F +ALA +
Sbjct: 512 VVFDDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNIELYPLQKDQSFALALATS 571
Query: 65 LNLDGTP--------DTGYYTPG--ARKTLADKYE-------------YIMHGKLFKIGD 101
L G P D + P R+ L + Y+ +++ K+++ D
Sbjct: 572 L-ARGPPGTTDEDDKDRDVWRPDGKGRRGLEEDYDPSVLDVALRRIDYFVVLVKVYRF-D 629
Query: 102 EGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
G+ + + A Y S+GGLLM L G +++ L +++L+RK
Sbjct: 630 GGTAEIVTA--YASFGGLLMSLTGSFRHMTSIVLGDPIYILLRK 671
>gi|345564101|gb|EGX47082.1| hypothetical protein AOL_s00097g128 [Arthrobotrys oligospora ATCC
24927]
Length = 155
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 13/149 (8%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ +L + F + ID +K+D+VSRI N D+ LD+ +LYPM+ G+ + LA
Sbjct: 15 DAILLSENFSINSID--SQKYDRVSRITG--SNPDVKFHLDIAHDLYPMQPGETIELVLA 70
Query: 63 HTLNLDGTPDTGYYTPGAR-----KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
TL LDG+ D G G R TLAD YEY+ +GK+++ +E S+KA Y+S+G
Sbjct: 71 STLKLDGSSDIGEAKQGWRDIDEMPTLADAYEYVCYGKIYRF-EEAGVDSIKA--YISFG 127
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
GLL+ L+G ++ + + ++LL++K+
Sbjct: 128 GLLLYLEGSAKKLTTLK-HEYVYLLVKKV 155
>gi|326926076|ref|XP_003209231.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Meleagris gallopavo]
Length = 116
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 3/96 (3%)
Query: 54 GDKFTMALAHTLNLDGTPDTGYYTPGA-RKTLADKYEYIMHGKLFKI-GDEGSGKS-LKA 110
GDKF + +A TL DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ +
Sbjct: 19 GDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRL 78
Query: 111 EIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
YVSYGGLLM L+GD + + FE+D R++LLM+KL
Sbjct: 79 SAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKL 114
>gi|429850751|gb|ELA25994.1| DNA-directed RNA polymerases i [Colletotrichum gloeosporioides Nara
gc5]
Length = 150
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 12/150 (8%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
++ LFE+ F V D K+D+V+RI A S + M LD+N EL+P D + LA
Sbjct: 6 DVTLFEESFTVTNYDQ--SKYDRVARISATSTDNQTLMTLDINIELFPASTSDSLHVVLA 63
Query: 63 HTLNLDGTPDT--GY--YTPG---ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVS 115
+L DG+ D G+ T G TLAD ++Y+ +GK++K D G+++KA YVS
Sbjct: 64 TSLAHDGSKDEEKGWRDVTKGNHDREPTLADMFDYVCYGKIYKFEDADDGQTIKA--YVS 121
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+GGLLM L+G ++ +D ++LL++K
Sbjct: 122 FGGLLMSLEGPYKKLTPLRVDY-VYLLIKK 150
>gi|237837845|ref|XP_002368220.1| RNA polymerase, putative [Toxoplasma gondii ME49]
gi|211965884|gb|EEB01080.1| RNA polymerase, putative [Toxoplasma gondii ME49]
gi|221488507|gb|EEE26721.1| RNA polymerase, putative [Toxoplasma gondii GT1]
gi|221509012|gb|EEE34581.1| RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 149
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS LFED F V +D KF++V+R++ S D + LDVNS+L+P++ + +
Sbjct: 1 MSIPCLFEDRFEVRSVD--CSKFERVARLKGKSSGFDADLQLDVNSDLFPVKEKQRLYIG 58
Query: 61 LAHTLNLDGTP---DTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYG 117
+ + L+ G D+ + P A +Y+Y+M+GK+F+ + S + +Y S+G
Sbjct: 59 ITNNLHSSGDARKDDSAWTEPAA---YLKEYDYVMYGKVFRTEECSSERRT---LYASFG 112
Query: 118 GLLMMLKGDPSYVSHFELDQRLFLLMRK 145
GLLM L D V ELD R+++L+R+
Sbjct: 113 GLLMALTADKHVVGDLELDMRIYILIRR 140
>gi|154286130|ref|XP_001543860.1| DNA-directed RNA polymerases i [Ajellomyces capsulatus NAm1]
gi|150407501|gb|EDN03042.1| DNA-directed RNA polymerases i [Ajellomyces capsulatus NAm1]
Length = 129
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 78/131 (59%), Gaps = 10/131 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+V+RI S + LDVN+ELYP+ +G+ ++A
Sbjct: 1 MSDPVLFEDTFTITAINA--QKYDRVARINCTSSDNLTTFTLDVNTELYPVAMGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG D+ R +TLA+ Y+Y+ HGK+++ + + +++ ++V
Sbjct: 59 LASTLALDGKDDSAGGRGAWRDVGMGDQTLANDYDYVCHGKVYRFEEGNTAENMS--VFV 116
Query: 115 SYGGLLMMLKG 125
S+G +L G
Sbjct: 117 SFGRSFALLGG 127
>gi|429328608|gb|AFZ80368.1| DNA-directed RNA polymerase subunit rpb8, putative [Babesia equi]
Length = 145
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+FED F+V ID KF++V+RI A S D +LLDVNS+L P+ + + ++
Sbjct: 6 CVFEDRFLVRSIDK--SKFERVARISAKSTGFDAELLLDVNSDLLPVNNKAMLHILITNS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
L G+ D TL YEY M+GK+FK + S IY S+GGLLM L
Sbjct: 64 LLPSGS-DVNLSECNDIPTLLGDYEYAMYGKIFKFEEISSETR---TIYASFGGLLMSLT 119
Query: 125 GDPSYVSHFELDQRLFLLMRKL 146
D V+ ELD +++LL+R++
Sbjct: 120 ADKQVVADLELDMKIYLLVRRI 141
>gi|119192578|ref|XP_001246895.1| hypothetical protein CIMG_00666 [Coccidioides immitis RS]
gi|392863865|gb|EAS35364.2| DNA-directed RNA polymerase I [Coccidioides immitis RS]
Length = 146
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 19/155 (12%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + LDVNSELY G+ ++A
Sbjct: 1 MSDPILFEDTFTITSIN--AQKYDRVSRISCTSTDQLTTFTLDVNSELYRCAPGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK----------TLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LA TL LDG D G G R TLA+ Y+Y+ +GK+++ D + ++
Sbjct: 59 LASTLALDG-KDEG---AGGRAVWRDVGMGETTLANDYDYVCYGKVYRFEDSSTAGNMA- 113
Query: 111 EIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
++VS+GGLL+ L G ++ +D ++LL++K
Sbjct: 114 -VFVSFGGLLLYLDGPYKKLNPLRIDY-VYLLIKK 146
>gi|50555592|ref|XP_505204.1| YALI0F09383p [Yarrowia lipolytica]
gi|49651074|emb|CAG78011.1| YALI0F09383p [Yarrowia lipolytica CLIB122]
Length = 139
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 91/142 (64%), Gaps = 8/142 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCD-MYMLLDVNSELYPMRVGDKFTMALAH 63
LFED F +D ++D+VSRI A S N D +++ LDVN+EL+PM GD T+ALA
Sbjct: 3 TLFEDSFKTTSVD--SARYDRVSRITAQSLNHDDIHLTLDVNTELFPMSKGDVVTVALAS 60
Query: 64 TLNLDGTPDTGYYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMM 122
L T +G+ P K+LAD Y+Y+M+G ++K +EGSG+ K +YVS+GGLL+
Sbjct: 61 QLTDKETTYSGWREPKVGEKSLADDYDYVMYGTVYKF-EEGSGE--KVAVYVSFGGLLLC 117
Query: 123 LKGDPSYVSHFELDQRLFLLMR 144
L+G ++S + + ++LLMR
Sbjct: 118 LEGGYRHLSSLK-QENVYLLMR 138
>gi|452002947|gb|EMD95404.1| hypothetical protein COCHEDRAFT_1088735 [Cochliobolus
heterostrophus C5]
Length = 146
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 94/150 (62%), Gaps = 12/150 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +FE+ F + I+ + K+D+VSRI S + + M LD+N EL+P+ VG+ T+
Sbjct: 1 MADAQVFEETFNITSINNE--KYDRVSRIYGTSTDSQITMTLDINHELFPVTVGESITLV 58
Query: 61 LAHTLNLDGTP----DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG+ DT + G + TLAD Y+Y+ +GK +++ + G+G ++K +
Sbjct: 59 LATTLALDGSSKGENDTMWRNVGKQGVATLADMYDYVCYGKNYRM-EGGNGDTIK--YFA 115
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
S+GGLL+ ++G +S ++D +++L++
Sbjct: 116 SFGGLLLYMEGPHRKLSGLKIDD-IYMLVK 144
>gi|67515821|ref|XP_657796.1| hypothetical protein AN0192.2 [Aspergillus nidulans FGSC A4]
gi|40746909|gb|EAA66065.1| hypothetical protein AN0192.2 [Aspergillus nidulans FGSC A4]
Length = 128
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 6/102 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F V ++ + K+D+VSR+ S + LD+NSELYP G+ +MA
Sbjct: 1 MSDPLLFEDTFTVTGVNQE--KYDRVSRLTCTSSDSQTTFTLDINSELYPCTTGESLSMA 58
Query: 61 LAHTLNLDGTPD---TGYYTPG-ARKTLADKYEYIMHGKLFK 98
LA TL+LDG D TG+ G +TLA+ Y+Y+ HGK+++
Sbjct: 59 LASTLSLDGKEDGAKTGWREVGMGEQTLANDYDYVCHGKVYR 100
>gi|296413304|ref|XP_002836354.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630171|emb|CAZ80545.1| unnamed protein product [Tuber melanosporum]
Length = 174
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 91/152 (59%), Gaps = 15/152 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS +LF+ F + D + K+D+V+RI + D+ LD++ ELYP+ +G+ ++
Sbjct: 31 MSESILFDSTFPITGFDQN--KYDRVARISGERE--DLKFSLDIHVELYPVAIGETVQLS 86
Query: 61 LAHTLNLDGTPD------TGY-YTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIY 113
LA TL+ DG + TG+ A +LAD Y+Y+ HGK+++ +EG+G+ +K +Y
Sbjct: 87 LASTLSPDGAKEDPAESKTGWKENKAAEPSLADTYDYVCHGKVYRF-EEGNGEFIK--VY 143
Query: 114 VSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GGLL+ L+G +S + ++LLM+K
Sbjct: 144 ASFGGLLLFLEGPHKKLSSMR-HEYVYLLMKK 174
>gi|71422062|ref|XP_812014.1| RNA polymerase B subunit RPB8 [Trypanosoma cruzi strain CL Brener]
gi|70876743|gb|EAN90163.1| RNA polymerase B subunit RPB8, putative [Trypanosoma cruzi]
Length = 149
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+ ED F V ++PDG + KVSRI+ ++ ++ + D+N+E +P+ + D+ T+ LA++
Sbjct: 6 VILEDTFTVTALNPDGVVYIKVSRIQCKNERGNITITSDINTEEFPVSLDDRLTIMLANS 65
Query: 65 LNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMM 122
+ L G +Y R+T +Y MHG+++ G E SL ++++S GGLL
Sbjct: 66 IELSGQSGAKHYDQSVYHRETRLQDCDYAMHGRVY--GHEVDESSLDVKVHISCGGLLTQ 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
+ G P + + +++L++++
Sbjct: 124 VIGTPQSLRDIHYNSDVYILIKRV 147
>gi|358396870|gb|EHK46245.1| hypothetical protein TRIATDRAFT_80649 [Trichoderma atroviride IMI
206040]
Length = 151
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V D KK+D+V+RI S + + LD+N EL+P GD + L
Sbjct: 8 DATLFEEGFTVTAYDQ--KKYDRVARISCTSLDNQTLIELDINIELFPCSQGDTLHVVLT 65
Query: 63 HTLNLDGTP--DTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY 116
TL+ DG+ D G+ G A TLAD Y+Y+ +GK++K + G ++ A YVS+
Sbjct: 66 TTLSPDGSKEDDKGWRDVGKSGDAPATLADLYDYVCYGKIYKFEETFDGNTINA--YVSF 123
Query: 117 GGLLMMLKGDPSYVSHFELDQRLFLLMR 144
GGLLM LKG ++ +D L+ R
Sbjct: 124 GGLLMALKGPVKKLTPLRVDNVYLLIKR 151
>gi|146091778|ref|XP_001470118.1| putative RNA polymerase B subunit RPB8 [Leishmania infantum JPCM5]
gi|157871622|ref|XP_001684360.1| putative RNA polymerase B subunit RPB8 [Leishmania major strain
Friedlin]
gi|398017999|ref|XP_003862186.1| RNA polymerase B subunit RPB8, putative [Leishmania donovani]
gi|68127429|emb|CAJ05166.1| putative RNA polymerase B subunit RPB8 [Leishmania major strain
Friedlin]
gi|134084912|emb|CAM69310.1| putative RNA polymerase B subunit RPB8 [Leishmania infantum JPCM5]
gi|322500415|emb|CBZ35492.1| RNA polymerase B subunit RPB8, putative [Leishmania donovani]
Length = 149
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+N V+ ED F V ++ +G + +VSRI +Q+ + + D+NSE +P+ D+ T+ L
Sbjct: 3 ANPVILEDTFTVNGVNTEGTVYLRVSRIRCVNQDGSLTITTDINSEEFPVSTNDRLTIVL 62
Query: 62 AHTLNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
A++L L G + YY R+T + +Y MHG+++ G E L+ +++S GGL
Sbjct: 63 ANSLELGGKTGSKYYDHSVYHRETRLNDCDYAMHGRVY--GHEVVENGLEVNVHISCGGL 120
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
L+ + G P + + +++L++++
Sbjct: 121 LVNIVGKPQGLRDVHYNSDVYILIKRV 147
>gi|158455108|gb|AAI18248.1| POLR2H protein [Bos taurus]
Length = 84
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP 78
L DGT D G Y P
Sbjct: 64 LYEDGTLDDGEYNP 77
>gi|401424862|ref|XP_003876916.1| putative RNA polymerase B subunit RPB8 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493160|emb|CBZ28445.1| putative RNA polymerase B subunit RPB8 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 149
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+N V+ ED F V ++ +G + +VSRI +Q+ + + D+NSE +P+ D+ T+ L
Sbjct: 3 TNPVILEDTFTVNGVNTEGTVYLRVSRIRCVNQDGSLTITTDINSEEFPVATNDRLTIVL 62
Query: 62 AHTLNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
A++L L G + YY R+T + +Y MHG+++ G E L+ +++S GGL
Sbjct: 63 ANSLELGGKTGSKYYDHSVYHRETRLNDCDYAMHGRVY--GHEVVENGLEVNVHISCGGL 120
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRKL 146
L+ + G P + + +++L++++
Sbjct: 121 LVNIVGKPQGLRDVHYNSDVYILIKRV 147
>gi|4406232|gb|AAD19908.1| RPB17 [Rattus norvegicus]
Length = 83
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP 78
L DGT D G Y P
Sbjct: 64 LYEDGTLDDGEYNP 77
>gi|317147448|ref|XP_003189921.1| UDP-glucose 4-epimerase Gal10 [Aspergillus oryzae RIB40]
Length = 110
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 11/110 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + ++ +K+D+VSR+ S + LDVN+ELYP G+ +MA
Sbjct: 1 MSDPLLFEDTFTITGVNQ--QKYDRVSRLTCTSTDHSSTFTLDVNTELYPCTTGESVSMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGS 104
LA TL+LDG DTG + G R +TLA+ Y+Y+ HGK+++ +EG+
Sbjct: 59 LASTLSLDGKEDTG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGT 105
>gi|213405034|ref|XP_002173289.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212001336|gb|EEB06996.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 125
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 20/145 (13%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS +L ++IF V D + +K+ +VSRI A S D+ ++LD+N++LYP+ G F++
Sbjct: 1 MSESILVDEIFTVS--DVNSEKYQRVSRITASSAQNDLDLILDINTQLYPLEKGATFSLQ 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
L LN +PD L + +YIM+GK++++ + K K +Y+SYGGLL
Sbjct: 59 LTSNLN---SPD-----------LKEAADYIMYGKVYRVEE---AKDDKISVYISYGGLL 101
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRK 145
M ++G + D ++LL+RK
Sbjct: 102 MSIEGSHRKLYRLSKDN-VYLLLRK 125
>gi|156103087|ref|XP_001617236.1| RNA polymerase subunit 8c [Plasmodium vivax Sal-1]
gi|148806110|gb|EDL47509.1| RNA polymerase subunit 8c, putative [Plasmodium vivax]
Length = 143
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 8/146 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +V +K +
Sbjct: 1 MASNILFEDRFVISSVD--NSKFEKVSRIKAKSTGYDAELILDVHSELF--KVEEKKAIY 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
LA + D + G +L + EYIM G++FK + S + +Y S+GGL+
Sbjct: 57 LALQDKILSKNDDKIWEQGENISL-NNIEYIMSGRIFKFEELSSERRT---VYASFGGLM 112
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L D ++ E+D +++LL + +
Sbjct: 113 MALTTDKQFIGDLEIDMKIYLLTKNV 138
>gi|357017061|gb|AET50559.1| hypothetical protein [Eimeria tenella]
Length = 143
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS LFED F V +D KF++VSRI A S D ++LDV+++L P V +K +
Sbjct: 1 MSIPCLFEDRFTVRNVD--NGKFERVSRIRAKSSGLDADLILDVHNQLLP--VAEKQGLH 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
+ T +L G G A + Y+Y+M+GK+FK+ + S + +Y+S+GGLL
Sbjct: 57 IGLTNSLSGPDRKG--DGAADSQVLSGYDYVMYGKVFKLEETSSERR---TLYLSFGGLL 111
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRK 145
M L D V ELD R++LL+++
Sbjct: 112 MSLAADKHVVGDLELDMRVYLLVKR 136
>gi|389586246|dbj|GAB68975.1| RNA polymerase subunit 8c [Plasmodium cynomolgi strain B]
Length = 143
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 8/146 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +V +K +
Sbjct: 1 MASNILFEDRFVISSVD--NSKFEKVSRIKAKSTGYDAELILDVHSELF--KVEEKKAIY 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
LA + D + G L + EYIM G++FK + S + +Y S+GGL+
Sbjct: 57 LALQDKILNKNDDKIWEQGENIAL-NNIEYIMSGRIFKFEELSSERRT---VYASFGGLM 112
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L D ++ E+D +++LL + +
Sbjct: 113 MALTTDKQFIGDLEIDMKIYLLTKNV 138
>gi|451856556|gb|EMD69847.1| hypothetical protein COCSADRAFT_214409 [Cochliobolus sativus
ND90Pr]
Length = 146
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 93/150 (62%), Gaps = 12/150 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +FE+ F + I+ + K+D+VSRI S + + M LD+N EL+P+ VG+ ++
Sbjct: 1 MADAQVFEETFNITSINNE--KYDRVSRIFGTSTDSQITMTLDINHELFPVTVGESISLV 58
Query: 61 LAHTLNLDGTP----DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG DT + G + TLAD Y+Y+ +GK +++ + G+G ++K +
Sbjct: 59 LATTLALDGNSKGENDTMWRNVGKQGVATLADMYDYVCYGKNYRM-EGGNGDTIK--YFA 115
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
S+GGLL+ ++G +S ++D +++L++
Sbjct: 116 SFGGLLLYMEGPHRKLSGLKIDD-IYMLVK 144
>gi|19112707|ref|NP_595915.1| DNA-directed RNA polymerase I, II and III subunit Rpb8
[Schizosaccharomyces pombe 972h-]
gi|3334495|sp|Q92399.2|RPAB3_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC3; Short=RNA polymerases I, II, and III subunit
ABC3; AltName: Full=DNA-directed RNA polymerases I, II,
and III 14.5 kDa polypeptide; AltName: Full=RPC14
gi|256599722|pdb|3H0G|H Chain H, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599734|pdb|3H0G|T Chain T, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529243|dbj|BAA22803.1| RNA polymerase II subunit Rpb8 [Schizosaccharomyces pombe]
gi|2731566|gb|AAB93482.1| RNA polymerase I, II and III subunit Rpb8 [Schizosaccharomyces
pombe]
gi|2792200|gb|AAC39321.1| Rpb8 [Schizosaccharomyces pombe]
gi|3006170|emb|CAA18430.1| DNA-directed RNA polymerase I, II and III subunit Rpb8
[Schizosaccharomyces pombe]
gi|3869135|dbj|BAA34367.1| RNA polymerase II subunit Rpb8 [Schizosaccharomyces pombe]
Length = 125
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 82/145 (56%), Gaps = 20/145 (13%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS VL ++IF V +D +K+ +VSRI A S DM + LD+NS++YP+ F++
Sbjct: 1 MSESVLLDEIFTVTSVDK--QKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQ 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
+ LN +PD L + +YIM+GK++++ + K K +YVS+GGLL
Sbjct: 59 ITSNLN---SPD-----------LKEAADYIMYGKVYRVEE---AKDEKVSVYVSFGGLL 101
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRK 145
M ++G + LD ++LL+R+
Sbjct: 102 MAIEGSHRKLYRLSLDH-VYLLLRR 125
>gi|403220616|dbj|BAM38749.1| DNA-directed RNA polymerases I, II, and III subunit [Theileria
orientalis strain Shintoku]
Length = 145
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+FED F+V ID KF++VSR+ A S D +LLDVNS+L + + + ++L
Sbjct: 7 VFEDRFLVRSID--NSKFERVSRLSAKSTGFDAELLLDVNSDLLQVNSKAMLHILITNSL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
G+ +P L D YEY M+GK+FK + S IY S+GGLLM L
Sbjct: 65 LPSGSEVNLSESPDVPSLLGD-YEYAMYGKIFKFEEVSSETR---TIYASFGGLLMSLTA 120
Query: 126 DPSYVSHFELDQRLFLLMRKL 146
D V+ +LD ++++L+R++
Sbjct: 121 DKQVVADLDLDMKIYILVRRI 141
>gi|440294275|gb|ELP87292.1| DNA-directed RNA polymerase I, II, and III subunit RPABC3, putative
[Entamoeba invadens IP1]
Length = 145
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 11 FVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGT 70
F ++ D G F+ VSR E + + + +D+N++L+P+ D + L +LN D +
Sbjct: 8 FTIKSKDAGGNVFENVSRFECEDKEGNYKIFVDINTDLFPLDTKDTIELELTTSLNFDNS 67
Query: 71 P---DTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDP 127
P GY + D Y+Y+MHG +FK ++ S K + S+GGLL M+
Sbjct: 68 PMDFKDGYTPDFGVNSKMDNYDYVMHGIVFKFVEDKSND--KVSVIASFGGLLFMVYASQ 125
Query: 128 SYVSHFELDQRLFLLMRK 145
S VS +D ++FLL+ K
Sbjct: 126 SLVSGINMDDQVFLLISK 143
>gi|83282657|ref|XP_729865.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Plasmodium yoelii yoelii 17XNL]
gi|23488908|gb|EAA21430.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 160
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 21/161 (13%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPM--------- 51
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +
Sbjct: 1 MASNILFEDRFVISNVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKVEEKKVAQII 58
Query: 52 ------RVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
++ + LA N G D + K+L + EYIM G++FK + S
Sbjct: 59 KKREKKKLNHHHAIYLALQDNFMGKNDEKTWEQTDNKSL-NNIEYIMSGRIFKFEELSSE 117
Query: 106 KSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
+ +Y SYGGL+M L D ++ E+D +++LL + +
Sbjct: 118 RRT---VYASYGGLMMALTADKQFIGDLEIDMKIYLLAKNV 155
>gi|258573937|ref|XP_002541150.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901416|gb|EEP75817.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 146
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 19/155 (12%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + ++ +K+D+VSRI S + LDVN+ELY G+ ++A
Sbjct: 1 MSDPILFEDTFSITSVN--AQKYDRVSRISCMSSDQLTTFTLDVNTELYACSPGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK----------TLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LA TL LDG + G R TLA+ Y+Y+ +GK+++ E S +
Sbjct: 59 LASTLALDGKEEGA----GGRAMWRDVGMGETTLANDYDYVCYGKVYRF--EESSTAGNM 112
Query: 111 EIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
++VS+GGLL+ L G ++ +D ++LL++K
Sbjct: 113 AVFVSFGGLLLYLDGPYKKLNPLRIDY-VYLLIKK 146
>gi|124805803|ref|XP_001350542.1| RNA polymerase subunit 8c, putative [Plasmodium falciparum 3D7]
gi|23496666|gb|AAN36222.1|AE014846_21 RNA polymerase subunit 8c, putative [Plasmodium falciparum 3D7]
Length = 145
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ + +A
Sbjct: 1 MASNILFEDRFVISSVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKVEEKKAIYLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
L L L+ + G+ + EYIM G++FK + S + +Y S+GGL+
Sbjct: 59 LQDKL-LNRNDEKGW--EQNENVPLNNIEYIMSGRIFKFEELSSERRT---VYASFGGLM 112
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L D ++ E+D +++LL + +
Sbjct: 113 MALTTDKQFIGDLEIDMKIYLLTKNI 138
>gi|154340321|ref|XP_001566117.1| putative RNA polymerase B subunit RPB8 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063436|emb|CAM39615.1| putative RNA polymerase B subunit RPB8 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 149
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+ ED F V ++ +G + +VSRI +Q+ + + D+NSE +P+ D+ T+ LA++
Sbjct: 6 VILEDTFTVNGVNTEGTVYLRVSRIRCVNQDGSLTITSDINSEEFPVATNDRLTIVLANS 65
Query: 65 LNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMM 122
L L G + YY R+T + +Y MHG+++ G E L+ +++S GGLL+
Sbjct: 66 LELGGKTGSKYYDHSVYHRETRLNDCDYAMHGRVY--GHEVVENGLEVNVHISCGGLLVN 123
Query: 123 LKGDPSYVSHFELDQRLFLLMRKL 146
+ G P + + +++L++++
Sbjct: 124 IIGKPQGLRDVHYNSDVYILIKRV 147
>gi|169611054|ref|XP_001798945.1| hypothetical protein SNOG_08636 [Phaeosphaeria nodorum SN15]
gi|111062684|gb|EAT83804.1| hypothetical protein SNOG_08636 [Phaeosphaeria nodorum SN15]
Length = 148
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 10/151 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ LFE+ F+V K++ + K+D+V R+ S + + LD+N EL+P+ G +
Sbjct: 1 MADAQLFEENFIVTKVNKE--KYDRVHRLSGTSTDGSLTFTLDINHELWPVAEGSTINIV 58
Query: 61 LAHTLNLDGTPDTGYYTP------GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDGT G T TLAD +EY+ +GK ++ D +G + Y
Sbjct: 59 LATTLALDGTTKEGAETSWRNVSRSNTATLADLFEYVCYGKNYRFEDAEAGAE-TVKYYA 117
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
S+GG+L+ ++G ++ ++D+ +++L +K
Sbjct: 118 SFGGMLLYIEGPYRKLNGLKIDE-IYMLCKK 147
>gi|221061289|ref|XP_002262214.1| rna polymerase subunit 8c [Plasmodium knowlesi strain H]
gi|193811364|emb|CAQ42092.1| rna polymerase subunit 8c, putative [Plasmodium knowlesi strain H]
Length = 143
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ VLFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ + +A
Sbjct: 1 MASNVLFEDRFVISSVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKVEEKKAIYLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
L + L+ D + + + EYIM G++FK + S + +Y S+GGL+
Sbjct: 59 LQDKI-LNKNDDKIW--EQSENIALNNIEYIMSGRIFKFEELSSERRT---VYASFGGLM 112
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRKL 146
M L D ++ E+D +++LL + +
Sbjct: 113 MALTTDKQFIGDLEIDMKIYLLTKNV 138
>gi|366989661|ref|XP_003674598.1| hypothetical protein NCAS_0B01380 [Naumovozyma castellii CBS 4309]
gi|342300462|emb|CCC68222.1| hypothetical protein NCAS_0B01380 [Naumovozyma castellii CBS 4309]
Length = 147
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 91/154 (59%), Gaps = 16/154 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++DP +++KV RIEA S + L LD+N+EL+P+ D+ T+
Sbjct: 1 MSN-TLFDDIFTVSEVDP--GRYNKVCRIEATSTTQEQCKLTLDINTELFPVSNNDQLTI 57
Query: 60 ALAHTLNLDGTPDTGY------YTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAE 111
+A +L+++ + + P +++AD Y+Y+M+G +K E K + A
Sbjct: 58 TIASSLSIESDSNANQDAAQRSWRPPQPDERSIADDYDYVMYGTAYKF--EEVNKDIIA- 114
Query: 112 IYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+Y S+GGLLM L+G+ ++ + + +LL+R+
Sbjct: 115 VYYSFGGLLMRLEGNYRNLNTLK-QENAYLLIRR 147
>gi|189206113|ref|XP_001939391.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975484|gb|EDU42110.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 146
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 90/150 (60%), Gaps = 12/150 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +FE+ F + I+ + K+D+VSRI S + + M LD+N EL+P+ G +
Sbjct: 1 MADAQVFEETFNITSINNE--KYDRVSRIYGTSTDNQITMTLDINHELFPVSTGASLNLV 58
Query: 61 LAHTLNLDGTP----DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG+ DT + G + TLAD Y+Y+ +GK +++ + G G ++K Y
Sbjct: 59 LATTLALDGSAKGENDTMWRNVGKQGVTTLADMYDYVCYGKNYRM-EGGDGDTIK--YYA 115
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
S+GGLL+ ++G +S ++D +++L++
Sbjct: 116 SFGGLLLYMEGPHRKLSGLKIDD-IYMLIK 144
>gi|330912439|ref|XP_003295947.1| hypothetical protein PTT_04001 [Pyrenophora teres f. teres 0-1]
gi|311332300|gb|EFQ95958.1| hypothetical protein PTT_04001 [Pyrenophora teres f. teres 0-1]
Length = 146
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 90/150 (60%), Gaps = 12/150 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +FE+ F + I+ + K+D+VSRI S + + M LD+N EL+P+ G +
Sbjct: 1 MADAQVFEETFNITSINNE--KYDRVSRIYGTSTDNQITMTLDINHELFPVSTGASLNLV 58
Query: 61 LAHTLNLDGTP----DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYV 114
LA TL LDG+ DT + G + TLAD Y+Y+ +GK +++ + G G ++K Y
Sbjct: 59 LATTLALDGSTKGENDTMWRNVGKQGVTTLADMYDYVCYGKNYRM-EGGDGDTIK--YYA 115
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMR 144
S+GGLL+ ++G +S ++D +++L++
Sbjct: 116 SFGGLLLYMEGPHRKLSGLKIDD-IYMLIK 144
>gi|167381103|ref|XP_001735574.1| DNA-directed RNA polymerase subunit rpb8 [Entamoeba dispar SAW760]
gi|165902372|gb|EDR28222.1| DNA-directed RNA polymerase subunit rpb8, putative [Entamoeba
dispar SAW760]
Length = 143
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 7/138 (5%)
Query: 11 FVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGT 70
F V D GK F+ VSR + + D+ + +D+N++L+P+ D+ + L TLN DG+
Sbjct: 8 FKVIAKDIGGKLFEGVSRFKLEGE--DLTVFVDINTDLFPLEENDRIKLDLTKTLNRDGS 65
Query: 71 P---DTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDP 127
P GY + T D ++Y+M G +FK + + +L + S+GGLL+ML G P
Sbjct: 66 PMDIHQGYSDNFGKNTKMDDFDYVMSGMVFKFVENKNDDNL--SVIASFGGLLLMLYGKP 123
Query: 128 SYVSHFELDQRLFLLMRK 145
+S + + +++LL+RK
Sbjct: 124 EKLSAYNMKDQVYLLIRK 141
>gi|225558381|gb|EEH06665.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus G186AR]
gi|240274811|gb|EER38326.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
gi|325094163|gb|EGC47473.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H88]
Length = 114
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 8/114 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+V+RI S + LDVN+ELYP+ +G+ ++A
Sbjct: 1 MSDPVLFEDTFTITAIN--AQKYDRVARISCTSSDNLTTFTLDVNTELYPVAMGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSL 108
LA TL LDG D+ R +TLA+ Y+Y+ HGK+++ + + +++
Sbjct: 59 LASTLALDGKDDSAGGRGAWRDVGMGEQTLANDYDYVCHGKVYRFEEGNTAENM 112
>gi|365986731|ref|XP_003670197.1| hypothetical protein NDAI_0E01380 [Naumovozyma dairenensis CBS 421]
gi|343768967|emb|CCD24954.1| hypothetical protein NDAI_0E01380 [Naumovozyma dairenensis CBS 421]
Length = 151
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 22/159 (13%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++D +++KV RIEA S + L LD+N+EL+P++ D+ T+
Sbjct: 1 MSN-TLFDDIFTVTEVD--AGRYNKVCRIEASSTTQEQCKLALDINTELFPVQNQDQLTI 57
Query: 60 ALAHTLNLDGTPDTGYYT-------------PGARKTLADKYEYIMHGKLFKIGDEGSGK 106
+A +L++D ++ PG R +LAD Y+Y+M+G +K +E S
Sbjct: 58 TIASSLSIDNDDESSKNNKNSAATRSWRPPQPGDR-SLADDYDYVMYGTAYKF-EEVSND 115
Query: 107 SLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
+ +Y S+GGLLM L+G+ ++ + + +LL+R+
Sbjct: 116 IIA--VYYSFGGLLMRLEGNYRNLNTLK-QENAYLLIRR 151
>gi|88687068|emb|CAJ43895.1| RNA polymerase I subunit RPB8 [Trypanosoma brucei brucei]
Length = 149
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ V+ ED F V ++ +G + +VSR+ + + + DVN+ +P+ GD+ T+ L
Sbjct: 3 SSKVILEDTFTVAAVNEEGTVYSRVSRVRCTGEGGGLIITSDVNTGEFPLHSGDRLTIIL 62
Query: 62 AHTLNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
++ L + +Y R T D +Y MHG+++ + E +G SL +++S GGL
Sbjct: 63 TDSIELSEQAGSKHYDQSVYHRSTRLDDCDYAMHGRVYSM--EVNGSSLDVTVHISCGGL 120
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRK 145
L + G P + + +++LM++
Sbjct: 121 LTQIVGKPQSLKDVHYNSDVYILMKR 146
>gi|1515321|emb|CAA68926.1| RPB8 [Schizosaccharomyces pombe]
gi|1515323|emb|CAA68927.1| RPB8 [Schizosaccharomyces pombe]
Length = 126
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 19/137 (13%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS VL ++IF V +D +K+ +VSRI A S DM + LD+NS++YP+ F++
Sbjct: 1 MSESVLLDEIFTVTSVDK--QKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQ 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
+ LN +PD L + +YIM+GK++++ + K K +YVS+GGLL
Sbjct: 59 ITSNLN---SPD-----------LKEAADYIMYGKVYRVEE---AKDEKVSVYVSFGGLL 101
Query: 121 MMLKGDPSYVSHFELDQ 137
M ++G + LD
Sbjct: 102 MAIEGSHRKLYRLSLDH 118
>gi|67483140|ref|XP_656855.1| RNA polymerase subunit Rpb8 [Entamoeba histolytica HM-1:IMSS]
gi|56474082|gb|EAL51470.1| RNA polymerase subunit Rpb8 [Entamoeba histolytica HM-1:IMSS]
gi|407037109|gb|EKE38496.1| RNA polymerase subunit Rpb8, putative [Entamoeba nuttalli P19]
gi|449709745|gb|EMD48952.1| RNA polymerase subunit Rpb8, putative [Entamoeba histolytica KU27]
Length = 143
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 7/138 (5%)
Query: 11 FVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGT 70
F V D GK F+ VSR + + D+ + +D+N++L+P+ D+ + L TLN DG+
Sbjct: 8 FKVIAKDIGGKIFEGVSRFKLEGE--DLTVFVDINTDLFPLEEHDRIKLDLTKTLNRDGS 65
Query: 71 P---DTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDP 127
P GY + T D ++Y+M G +FK + + +L + S+GGLL+ML G P
Sbjct: 66 PMDIHQGYSDNFGKNTKMDDFDYVMSGMVFKFVENKNDDNL--SVIASFGGLLLMLYGKP 123
Query: 128 SYVSHFELDQRLFLLMRK 145
+S + + +++LL+RK
Sbjct: 124 EKLSAYNMKDQVYLLIRK 141
>gi|330040643|ref|XP_003239981.1| RNA polymerase II subunit [Cryptomonas paramecium]
gi|327206907|gb|AEA39083.1| RNA polymerase II subunit [Cryptomonas paramecium]
Length = 151
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 11/130 (8%)
Query: 21 KKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL----NLDGTPDTGYY 76
K F KVSR+ S++ + M LDVN+E+Y + +GDK + + + L G + +
Sbjct: 29 KTFSKVSRVLVQSKDSKLQMFLDVNTEIYNLCLGDKLDIMITKVVEPVYELQGHVND--W 86
Query: 77 TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELD 136
+K L D YEY+M+G +F +G EG+G IY S+GGLLM + G + FE+D
Sbjct: 87 VFNFKKELIDLYEYVMYGTVFHMGVEGNG----FFIYASFGGLLMKMFGIEKK-TDFEID 141
Query: 137 QRLFLLMRKL 146
++ +L+RK+
Sbjct: 142 TKILILIRKV 151
>gi|357501005|ref|XP_003620791.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Medicago truncatula]
gi|355495806|gb|AES77009.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Medicago truncatula]
Length = 134
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 78/132 (59%), Gaps = 23/132 (17%)
Query: 5 VLFEDIFVVEKIDPDGKKFDK--------------VSRIEAHSQNCDMYMLLDVNSELYP 50
+LF+D F + ++P+G+K+DK VSRI A S+ M+MLLDVN+E+YP
Sbjct: 4 LLFDDFFKIVDVNPNGEKYDKAPRVLKVASTEIVDVSRIVARSEKHGMHMLLDVNTEIYP 63
Query: 51 MRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
M +KF +AL+ +L L+ T ++ +K+EYIM+G+L+ I +G +S
Sbjct: 64 MDRKEKFLLALSPSLVLN--------TKDGPVSIQEKFEYIMYGRLYDIKADGLSRS-PP 114
Query: 111 EIYVSYGGLLMM 122
E+YV+ ++++
Sbjct: 115 EVYVNASHVILL 126
>gi|50290899|ref|XP_447882.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527193|emb|CAG60831.1| unnamed protein product [Candida glabrata]
Length = 150
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 90/153 (58%), Gaps = 18/153 (11%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+DIF + ++DP +++ V RIEA S + L LD+N+ L+P++V ++ T+ +A
Sbjct: 4 TLFDDIFTISEVDP--GRYNNVCRIEAGSTTQEQCKLTLDINTNLFPVQVNEQLTVTVAS 61
Query: 64 TLNL---------DGTPDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEI 112
+L++ D T + + P ++LAD Y+Y+MHG +K E K + A +
Sbjct: 62 SLDVDDDDKAKVNDSTGASRSWRPPQPGDRSLADDYDYVMHGTAYKF--EEVSKDVIA-V 118
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y S+GGLLM L+G+ +++ + + +LL+R+
Sbjct: 119 YYSFGGLLMRLEGNYRNLNNLK-QETAYLLIRR 150
>gi|430814102|emb|CCJ28617.1| unnamed protein product [Pneumocystis jirovecii]
Length = 126
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 21/144 (14%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
++ +L ++IF + +D +KFD+VSRI A S D+ M LD+NSELYP++ + ++ L
Sbjct: 4 TDTILIDEIFHINSVD--SQKFDRVSRIVAISSLQDIEMTLDINSELYPLKPDESISVQL 61
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLM 121
A TL + D +YIM+GK+++ DEG + +YVS+GGLLM
Sbjct: 62 ASTL---------------QDAFKDSADYIMYGKVYRF-DEGEKD--RVSVYVSFGGLLM 103
Query: 122 MLKGDPSYVSHFELDQRLFLLMRK 145
L+G ++ D ++L +RK
Sbjct: 104 CLEGPYKKLNRLSHDH-VYLFIRK 126
>gi|290562742|gb|ADD38766.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Lepeophtheirus salmonis]
Length = 157
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 9/152 (5%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
NIV EDIF ID DGK FD+VSR+ S++ M ++LD +S+L+ ++ GDK + +
Sbjct: 6 CNIV--EDIFDARVIDKDGKCFDQVSRVMGESESFKMNIILDYHSQLFQIKKGDKLRIIV 63
Query: 62 AHTLNLDG--TPDTGYYTPGARKTLA----DKYEYIMHGKLFKIGDEGSGKS-LKAEIYV 114
+L D D + LA ++++Y+ +GK+++I S + ++YV
Sbjct: 64 TKSLLGDTMADADDEDACDETEEKLANSKMNEFDYVCYGKVYRIMPADSNNDPNRLKVYV 123
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
S+GGLLM L G+ S ++ F ++ ++L+ +KL
Sbjct: 124 SFGGLLMELTGEASNLTGFATNKCVYLMAKKL 155
>gi|71032237|ref|XP_765760.1| RNA polymerase subunit [Theileria parva strain Muguga]
gi|68352717|gb|EAN33477.1| RNA polymerase subunit, putative [Theileria parva]
Length = 145
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+FED F+V ID KF++VSR+ A S D +LLD NS+L + + + ++L
Sbjct: 7 VFEDRFLVRSID--NSKFERVSRLSAKSTGFDAELLLDFNSDLLQVYNKQVLHILITNSL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
L D +L YEY M+GK+FK + S IY S+GGLLM L
Sbjct: 65 -LPSGSDVNLSESVDIPSLLGDYEYAMYGKIFKFEEVSSETR---TIYASFGGLLMSLTA 120
Query: 126 DPSYVSHFELDQRLFLLMRKL 146
D V+ +LD +++LL+R++
Sbjct: 121 DKQVVADLDLDMKIYLLVRRI 141
>gi|84999542|ref|XP_954492.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kDa polypeptide
[Theileria annulata]
gi|65305490|emb|CAI73815.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kDa polypeptide,
putative [Theileria annulata]
Length = 145
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+FED F+V ID KF++VSR+ A S D +LLD NS+L + + + ++L
Sbjct: 7 VFEDRFLVRSID--NSKFERVSRLSAKSTGFDAELLLDYNSDLLQVYNKQVLHILITNSL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
L D +L YEY M+GK+FK + S IY S+GGLLM L
Sbjct: 65 -LPSGSDVNLSESVDIPSLLGDYEYAMYGKIFKFEEVSSETR---TIYASFGGLLMSLTA 120
Query: 126 DPSYVSHFELDQRLFLLMRKL 146
D V+ +LD +++LL+R++
Sbjct: 121 DKQVVADLDLDMKIYLLVRRI 141
>gi|71755905|ref|XP_828867.1| RNA polymerase B subunit RPB8 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834253|gb|EAN79755.1| RNA polymerase B subunit RPB8, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261334791|emb|CBH17785.1| RNA polymerase B subunit RPB8, putative [Trypanosoma brucei
gambiense DAL972]
Length = 149
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ V+ ED F V ++ +G + +VSR+ + + + DVN+ +P+ GD+ T+ L
Sbjct: 3 SSKVILEDTFTVAAVNEEGTVYSRVSRVRCTGEGGGLIITSDVNTGEFPLHSGDRLTIIL 62
Query: 62 AHTLNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGL 119
++ L + +Y R T D +Y MHG+++ + E + SL +++S GGL
Sbjct: 63 TDSIELSEQAGSKHYDQSVYHRSTRLDDCDYAMHGRVYSM--EVNESSLDVTVHISCGGL 120
Query: 120 LMMLKGDPSYVSHFELDQRLFLLMRK 145
L + G P + + +++LM++
Sbjct: 121 LTQIVGKPQSLKDVHYNSDVYILMKR 146
>gi|367022278|ref|XP_003660424.1| hypothetical protein MYCTH_2298731 [Myceliophthora thermophila ATCC
42464]
gi|347007691|gb|AEO55179.1| hypothetical protein MYCTH_2298731 [Myceliophthora thermophila ATCC
42464]
Length = 116
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 12/118 (10%)
Query: 1 MSNIV----LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDK 56
MSNI LFED F VE++ K+D+V RI S++ + M LD+N+EL+P + D+
Sbjct: 1 MSNIASDAQLFEDHFRVERLG--NAKYDRVDRIYCQSEDKSITMTLDINNELFPCKPDDE 58
Query: 57 FTMALAHTLNLDGTPDT--GYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
+ALA +LN DG+ D G+ + TLAD ++Y+ +GK++K D GK++
Sbjct: 59 LHVALATSLNYDGSKDNERGWRDVAKAGASDATLADIFDYVCYGKIYKFEDAEDGKTM 116
>gi|307177453|gb|EFN66580.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Camponotus floridanus]
Length = 89
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 26 VSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARK--T 83
VSR+ S++ M ++LD+NS LYPM +GDKF + LA TL DG PD + P ++ +
Sbjct: 1 VSRLHCESESFKMDLILDINSWLYPMDLGDKFRLVLATTLREDGYPDGNEWNPIEQEGGS 60
Query: 84 LADKYEYIMHGKLFKI-GDEGSGK 106
AD +EY+M GK+++I GDE S +
Sbjct: 61 RADSFEYVMSGKVYRIEGDEASNE 84
>gi|385302364|gb|EIF46498.1| dna-directed rna polymerases i [Dekkera bruxellensis AWRI1499]
Length = 137
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 14/137 (10%)
Query: 16 IDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGY 75
I D +KF ++ + + D + +D+N+EL+P+ D T+ LA +L++D + D G
Sbjct: 6 IPADTRKF--AGSLQKSTTSPDTKITIDINTELFPVAKMDTLTITLAKSLSIDDSGDXGM 63
Query: 76 YTPGA--------RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDP 127
+T ++TL D Y+Y+M+G ++K +EGS K +Y S+GGLLM L+G+
Sbjct: 64 FTANGSWRPPKPNQRTLMDDYDYVMYGTVYKF-EEGSND--KISLYCSFGGLLMCLEGNY 120
Query: 128 SYVSHFELDQRLFLLMR 144
+S + L++LMR
Sbjct: 121 RTLSSLR-QENLYILMR 136
>gi|118345758|ref|XP_976709.1| RNA polymerase Rpb8 family protein [Tetrahymena thermophila]
gi|89288126|gb|EAR86114.1| RNA polymerase Rpb8 family protein [Tetrahymena thermophila SB210]
Length = 144
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 76/124 (61%), Gaps = 6/124 (4%)
Query: 23 FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGA-- 80
F KV R+ S N ++ + +D++++LY M+ G+++ + + +L + D G +
Sbjct: 23 FSKVERVVLVSDN-NIKIEIDIHTDLYSMKKGNQYWVMITSSLG-NFQEDKGIFVSEEFD 80
Query: 81 RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLF 140
R+++ DK+EY+MHGK++ + + K++ I+ S+GGLLM + G + +F +D R++
Sbjct: 81 RESIKDKFEYVMHGKIYNMNSDNKAKTV--SIFASFGGLLMKVSGKDEDLKNFNVDSRIY 138
Query: 141 LLMR 144
+L+R
Sbjct: 139 ILIR 142
>gi|361128195|gb|EHL00141.1| putative DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Glarea lozoyensis 74030]
Length = 146
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Query: 19 DGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTG---- 74
D KK+D+V R+ S + + + LD+NS++YP VGD+ + LA +L+LDG+ D G
Sbjct: 52 DDKKYDRVCRLSGTSLDGSIAIKLDINSQIYPCAVGDQIRVVLATSLSLDGSKDDGKGWR 111
Query: 75 -YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
A T+AD ++Y+ HGK++K D +G S+
Sbjct: 112 DIARSDAESTMADMFDYVCHGKIYKFEDVENGDSM 146
>gi|367045428|ref|XP_003653094.1| hypothetical protein THITE_2128764 [Thielavia terrestris NRRL 8126]
gi|347000356|gb|AEO66758.1| hypothetical protein THITE_2128764 [Thielavia terrestris NRRL 8126]
Length = 116
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 8/113 (7%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ LFED F +E++ K+D+V RI S++ + M LD+N EL+P +VG++ +AL
Sbjct: 6 SDAQLFEDHFRIERLSE--PKYDRVDRIYCTSEDGSISMSLDINKELFPCKVGEELHVAL 63
Query: 62 AHTLNLDGTPD--TGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
A +L+ DG+ D G+ + TLAD ++Y+ +GK++K D G+++
Sbjct: 64 ATSLHYDGSKDDERGWRDVAKAGASDATLADIFDYVCYGKIYKFEDAEDGRTM 116
>gi|224144621|ref|XP_002336165.1| predicted protein [Populus trichocarpa]
gi|222874775|gb|EEF11906.1| predicted protein [Populus trichocarpa]
Length = 56
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 44/55 (80%)
Query: 92 MHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
MHGKL+KI DEGSG + K E+ +S+GGLLM LKG+P ++ F+LDQ+ FL MRKL
Sbjct: 1 MHGKLYKILDEGSGANHKVEMLISFGGLLMSLKGNPDCITDFQLDQKYFLCMRKL 55
>gi|426343152|ref|XP_004038181.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 2 [Gorilla gorilla gorilla]
Length = 86
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 25/109 (22%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLF 97
M ++LDVN ++YP+ +GDKF + +A TL DGT D G Y P +
Sbjct: 1 MDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRP-------------- 46
Query: 98 KIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
+ YVSYGGLLM L+GD + + FE+D R++LLM+KL
Sbjct: 47 -----------SSSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKL 84
>gi|406604276|emb|CCH44248.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 109
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 9/109 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIE-AHSQNCDMYMLLDVNSELYPMRVGDKFTM 59
MSN LF+DIF + D D +++KVSRI S + D+ + LD+NS+L+P+ G+ T+
Sbjct: 1 MSN-TLFDDIFNI--TDVDAARYNKVSRINGTSSTSSDIKITLDINSDLFPVTSGEALTI 57
Query: 60 ALAHTLNLDG-TPDT--GYYTPGA-RKTLADKYEYIMHGKLFKIGDEGS 104
LA +L LD DT + P A K+LAD Y+Y+M+G ++K +EGS
Sbjct: 58 TLASSLALDDKNKDTTGSWRAPKAGEKSLADDYDYVMYGTVYKF-EEGS 105
>gi|399949771|gb|AFP65428.1| RNA polymerase II subunit [Chroomonas mesostigmatica CCMP1168]
Length = 167
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 28/165 (16%)
Query: 5 VLFEDIFVVEKID------------PDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMR 52
+L +IF+VE+ID K F KVSRI A S + + +L+D+N+E+Y ++
Sbjct: 6 ILVNEIFIVEEIDMVPTKINNVLTKVKNKIFSKVSRIFASSISRKIQILIDINTEIYKIQ 65
Query: 53 VGDKFTMALAHT--LNLDGTPDTGYYTPGARKT------LADKYEYIMHGKLFKIGDEGS 104
GD +++ LN++G K L D YEY+M+G ++ G +G
Sbjct: 66 EGDILELSIVFPPFLNIEGIKCNENSNSSIEKLFLNSHDLIDSYEYVMYGTVYHSGIDG- 124
Query: 105 GKSLKAEIYVSYGGLLMMLKGD----PSYVSHFELDQRLFLLMRK 145
+ IY S+GGLLM + G + V ++D ++ L +RK
Sbjct: 125 ---INFFIYASFGGLLMKIFGKNDKPETNVESIQIDSKILLCIRK 166
>gi|413934733|gb|AFW69284.1| hypothetical protein ZEAMMB73_608801 [Zea mays]
Length = 115
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 69/123 (56%), Gaps = 18/123 (14%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELY-PMRVGDKFTMALAHT 64
+F++ F V K+DPDG D+V+RIEAHS N +MYM LDV +E+Y P+ F + H
Sbjct: 5 IFKNKFEVSKLDPDG---DEVNRIEAHSVN-EMYMQLDVATEVYEPI----PFLLGAQH- 55
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA-EIYVSYGGLLMML 123
DG P + RKTL D YEYIM GKLFK+ + + L EI + + +
Sbjct: 56 ---DGIP----FMLLGRKTLVDDYEYIMLGKLFKVSKDSTKDDLHGDEILPQFVAMCPCV 108
Query: 124 KGD 126
K D
Sbjct: 109 KKD 111
>gi|116195970|ref|XP_001223797.1| hypothetical protein CHGG_04583 [Chaetomium globosum CBS 148.51]
gi|88180496|gb|EAQ87964.1| hypothetical protein CHGG_04583 [Chaetomium globosum CBS 148.51]
Length = 116
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 12/118 (10%)
Query: 1 MSNIV----LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDK 56
MSNI LFE+ F +E++ + K+D+V RI S++ + M LD+N+EL+P + ++
Sbjct: 1 MSNIASDAQLFEEHFRIERLGDN--KYDRVDRIYCKSEDKSITMTLDINNELFPCKPDEE 58
Query: 57 FTMALAHTLNLDGTPD--TGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
+ALA +L+ DG+ D G+ + TLAD ++Y+ +GK++K D GK++
Sbjct: 59 LHVALATSLHYDGSKDDERGWRDVAKAGASDATLADIFDYVCYGKIYKFEDAEDGKTM 116
>gi|161899461|ref|XP_001712964.1| DNA directed RNA polymerase subunit I/II/III [Bigelowiella natans]
gi|1401210|gb|AAD05371.1| putative RNA polymerase II subunit [Bigelowiella natans]
gi|75756459|gb|ABA27352.1| DNA directed RNA polymerase subunit I/II/III [Bigelowiella natans]
Length = 147
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 8 EDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNL 67
DI + DPDGK ++KVSRI A S +M + D+NS L+P+ VGD +++ +T++
Sbjct: 11 NDIIKILSKDPDGKLYEKVSRIIAQSYYLNMELWFDINSHLFPIYVGDSLNLSI-YTISD 69
Query: 68 DGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGG 118
+ T L DKYEY M GK+F I ++ IY S+GG
Sbjct: 70 ESFNST--IKDNQFSYLVDKYEYFMIGKVFNIITSIERETSFNLIYASFGG 118
>gi|241756249|ref|XP_002406380.1| DNA-directed RNA polymerase subunit rpb8, putative [Ixodes
scapularis]
gi|215506117|gb|EEC15611.1| DNA-directed RNA polymerase subunit rpb8, putative [Ixodes
scapularis]
Length = 75
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN +LYP+ +GDKF + +A TL DG PD G Y P + +D +EY+M+GK+
Sbjct: 1 MDLILDVNIQLYPVDLGDKFRLVIATTLREDGYPDDGEYNPADTGPSRSDSFEYVMYGKI 60
Query: 97 FKI-GDEGSGKSLK 109
++I GD+ SG++ +
Sbjct: 61 YRIEGDDISGETTR 74
>gi|346470149|gb|AEO34919.1| hypothetical protein [Amblyomma maculatum]
Length = 104
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN+ LYP+ +GDKF + +A TL DG PD G Y P + AD +EY+M+GK+
Sbjct: 1 MDLILDVNTMLYPVDLGDKFRLVIATTLREDGYPDDGEYNPADTGPSRADSFEYVMYGKI 60
Query: 97 FKI-GDEGSGKSLK 109
++I GD+ +G++ +
Sbjct: 61 YRIEGDDITGETTR 74
>gi|322709906|gb|EFZ01481.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 130
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V + D K+D+V+RI S + M+LD+N EL+P D + L+
Sbjct: 7 DATLFEESFTVTEYDQ--SKYDRVARISCTSADSQTVMVLDINIELFPCARSDSLHVVLS 64
Query: 63 HTLNLDGTP--DTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
TL+ DG+ D G+ G A TLAD Y+Y+ +GK++K + G ++
Sbjct: 65 TTLSPDGSKEDDKGWRDVGKGGDAPATLADLYDYVCYGKIYKFEETYDGNTM 116
>gi|294900305|ref|XP_002776955.1| RNA polymerase II B8 subunit, putative [Perkinsus marinus ATCC
50983]
gi|239884250|gb|EER08771.1| RNA polymerase II B8 subunit, putative [Perkinsus marinus ATCC
50983]
Length = 87
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+FED+F V+ ID +KFD+VSRI+A S + + +D+N+E+YP+ D +A+A
Sbjct: 3 AIFEDMFDVKNIDD--EKFDRVSRIKAQSHTYNAEIEVDINTEIYPIGSSDTLRIAIASA 60
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGK 95
+ + GY A+ + D YEY M+GK
Sbjct: 61 AD----ANEGYQGEAAQPGIIDDYEYAMYGK 87
>gi|148665176|gb|EDK97592.1| polymerase (RNA) II (DNA directed) polypeptide H, isoform CRA_b
[Mus musculus]
Length = 91
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVG 54
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +G
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLG 53
>gi|149019877|gb|EDL78025.1| rCG36803, isoform CRA_c [Rattus norvegicus]
Length = 59
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVG 54
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +G
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLG 53
>gi|160331502|ref|XP_001712458.1| rpb8 [Hemiselmis andersenii]
gi|159765906|gb|ABW98133.1| rpb8 [Hemiselmis andersenii]
Length = 155
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 16 IDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH-TLNLDGTPDT- 73
I K F KVSRI A S + + LD+N+E+YP+ DK + N P+
Sbjct: 25 IKVKNKIFSKVSRIFAISIGNKIEVTLDINTEIYPIHDQDKLDFRIMEVNPNQKNEPNNH 84
Query: 74 GYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSH- 132
+ + L + +EY+M+G +F G E K Y S+GGLL+ + G+ +++
Sbjct: 85 KNWIDFFDRKLIELFEYVMYGTIFHCGIENK----KFFFYGSFGGLLLKIFGNSDQIAYK 140
Query: 133 -FELDQRLFLLMRKL 146
++D ++ LL+RK+
Sbjct: 141 DLKVDSKILLLIRKI 155
>gi|56758150|gb|AAW27215.1| SJCHGC08401 protein [Schistosoma japonicum]
Length = 121
Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG----------ARKTLADK 87
M ++LD+++ +Y + GDKF M L TL + T D A +A+
Sbjct: 1 MGLILDIHALIYSLTKGDKFRMVLTKTLLNELTVDADDDDEDDAADETDEKLANSKMAE- 59
Query: 88 YEYIMHGKLFKIGDEGSG-KSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
++Y+ +GK+++I + SG + + YVS+GGLLM L GD S + F + + L+L+++KL
Sbjct: 60 FDYVCYGKIYRIETQDSGVDASRLSCYVSFGGLLMQLTGDASNLQGFRVGKHLYLMIKKL 119
>gi|413923190|gb|AFW63122.1| hypothetical protein ZEAMMB73_293944, partial [Zea mays]
gi|414588094|tpg|DAA38665.1| TPA: hypothetical protein ZEAMMB73_291772, partial [Zea mays]
Length = 53
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 31/42 (73%)
Query: 37 DMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTP 78
+M M LDV +E+Y MRVGD F M LA TLNLD + DTGYYT
Sbjct: 6 EMCMQLDVATEVYSMRVGDTFNMVLALTLNLDRSTDTGYYTQ 47
>gi|308162943|gb|EFO65310.1| RNA polymerase II subunit Rpb8 [Giardia lamblia P15]
Length = 150
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 6 LFEDIFVVEKIDPDGKKF-DKVSRIEAHSQN-CDMYMLLDVNSELYPMRVGDKFTMALAH 63
L+ F + DP+ K+ D + R+ S + D+++ LD N ELYP + ++ +
Sbjct: 3 LYSSRFNITSFDPECVKYYDNIGRVLLESTDDTDVFLTLDYNLELYPKLNKNARSLEVQM 62
Query: 64 TLNL-----DGTPDTGYYTPGARKTLADKY---EYIMHGKLFKIGDEGSGKSLKAEIYVS 115
N+ + + D+ Y P + L D Y +Y MHG +F+ G K ++++S
Sbjct: 63 LSNISYQDFNVSADSPNYDPKLSEILHDAYPDLDYAMHGTVFEFRANGD----KVDMFIS 118
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLL 142
+GGL+ L+ S + F+ +L+LL
Sbjct: 119 FGGLIAKLQAPASRLERFKFGMKLYLL 145
>gi|413923191|gb|AFW63123.1| hypothetical protein ZEAMMB73_293944 [Zea mays]
gi|414588095|tpg|DAA38666.1| TPA: hypothetical protein ZEAMMB73_291772 [Zea mays]
Length = 155
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 30/40 (75%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYT 77
M M LDV +E+Y MRVGD F M LA TLNLD + DTGYYT
Sbjct: 1 MCMQLDVATEVYSMRVGDTFNMVLALTLNLDRSTDTGYYT 40
>gi|159112294|ref|XP_001706376.1| RNA polymerase II subunit Rpb8 [Giardia lamblia ATCC 50803]
gi|21842223|gb|AAM77739.1|AF510647_1 RNA polymerase II subunit Rpb8 [Giardia intestinalis]
gi|157434472|gb|EDO78702.1| RNA polymerase II subunit Rpb8 [Giardia lamblia ATCC 50803]
Length = 150
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 6 LFEDIFVVEKIDPDGKKF-DKVSRIEAHSQN-CDMYMLLDVNSELYP-----MRVGDKFT 58
L+ F + DP+ K+ D + R+ S + D+++ LD N ELYP R +
Sbjct: 3 LYSSRFSIASFDPECVKYYDNIGRVLLESTDDPDVFLTLDYNLELYPKLNKNARSLEVQI 62
Query: 59 MALAHTLNLDGTPDTGYYTPGARKTLADKY---EYIMHGKLFKIGDEGSGKSLKAEIYVS 115
++ + + + D+ Y P + L D Y +Y MHG +F+ G K ++++S
Sbjct: 63 LSSISYQDFNVSADSPNYDPKLSEILHDAYPDLDYAMHGTVFEFRAVGD----KVDMFIS 118
Query: 116 YGGLLMMLKGDPSYVSHFELDQRLFLL 142
+GGL+ L+ + F+ +L+LL
Sbjct: 119 FGGLIAKLQAPAFRLERFKFGMKLYLL 145
>gi|353238931|emb|CCA70861.1| hypothetical protein PIIN_04796 [Piriformospora indica DSM 11827]
Length = 88
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 16 IDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
++ DG K+++VSR++A S N M + LD N ELYP+R + T+ LA +L
Sbjct: 5 LNVDGNKYERVSRLQARSSNLGMELSLDFNHELYPLRPNETITLVLASSL 54
>gi|118381687|ref|XP_001024004.1| RNA polymerase Rpb8 family protein [Tetrahymena thermophila]
gi|89305771|gb|EAS03759.1| RNA polymerase Rpb8 family protein [Tetrahymena thermophila SB210]
Length = 130
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 77/146 (52%), Gaps = 22/146 (15%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ +L +D F+ I + K + + R+ +++ + + +D+N +L+PM K+ + L
Sbjct: 6 SDAILVDDTFIASNIIKEPK-YVRTWRVILNNET--LSIEIDINFDLFPMEQDKKYQVIL 62
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLM 121
+ + P +K+ + Y M+GK+FKI E + IY+SYGGL+M
Sbjct: 63 TQS-----------FLPEYKKS----FSYAMYGKIFKIDLE---QDQYQSIYISYGGLVM 104
Query: 122 MLKGDPSYVSH-FELDQRLFLLMRKL 146
++G + +S + + R ++L+R++
Sbjct: 105 KMRGKLNDMSQSIKNETRCYILLRQI 130
>gi|253746506|gb|EET01744.1| RNA polymerase II subunit Rpb8 [Giardia intestinalis ATCC 50581]
Length = 150
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 6 LFEDIFVVEKIDPDGKKF-DKVSRI--EAHSQNCDMYMLLDVNSELYPM--RVGDKFTMA 60
L+ F + DP+ K+ D + R+ E+ N D+ + LD N ELYP + +
Sbjct: 3 LYSSRFNIASFDPECVKYYDNIGRVLLESTDDN-DVTLTLDYNRELYPKLNKNARSLEVQ 61
Query: 61 LAHTL---NLDGTPDTGYYTPGARKTLADKY---EYIMHGKLFKIGDEGSGKSLKAEIYV 114
L ++ + + + D+ Y P + L D Y +Y MHG +F E K ++++
Sbjct: 62 LLSSISYQDFNISADSPSYDPKLSEILHDAYPDLDYAMHGTVF----EFRASDDKVDMFI 117
Query: 115 SYGGLLMMLKGDPSYVSHFELDQRLFLL 142
S+GGL+ L+ + F+ +L+LL
Sbjct: 118 SFGGLIAKLQAPAFRLERFKFGMKLYLL 145
>gi|426343158|ref|XP_004038184.1| PREDICTED: chloride channel protein 2 [Gorilla gorilla gorilla]
Length = 523
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
YVSYGGLLM L+GD + + FE+D R++LLM+KL
Sbjct: 488 YVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKL 521
>gi|332027637|gb|EGI67705.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Acromyrmex echinatior]
Length = 201
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 17 DPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYY 76
DPDG+ ++ QN D + GDKF + L+ TL DG PD +
Sbjct: 43 DPDGRCAAPRRAASSNVQNKD----------FNERKFGDKFRLVLSTTLREDGYPDGNEW 92
Query: 77 TPGARK--TLADKYEYIMHGKLFKI-GDEGSGK 106
P ++ + AD +EY+M GK+++I GDE + +
Sbjct: 93 NPMEQEGGSRADSFEYVMSGKVYRIEGDEANNE 125
>gi|68062837|ref|XP_673427.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491270|emb|CAI02289.1| hypothetical protein PB300648.00.0 [Plasmodium berghei]
Length = 49
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPM 51
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +
Sbjct: 1 MASNILFEDRFVISNVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKV 49
>gi|322788214|gb|EFZ13996.1| hypothetical protein SINV_13590 [Solenopsis invicta]
Length = 60
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 55 DKFTMALAHTLNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK 106
DKF + LA TL DG PD + P ++ + AD +EY+M GK+++I GDE + +
Sbjct: 1 DKFRLVLATTLREDGYPDGNEWNPMEQEGGSRADSFEYVMSGKVYRIEGDEANNE 55
>gi|297847082|ref|XP_002891422.1| hypothetical protein ARALYDRAFT_891644 [Arabidopsis lyrata subsp.
lyrata]
gi|297337264|gb|EFH67681.1| hypothetical protein ARALYDRAFT_891644 [Arabidopsis lyrata subsp.
lyrata]
Length = 80
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 25 KVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
V+R +A S N +M+M L+VN+E+Y VGDKFT++
Sbjct: 13 TVTRFQATSHNLEMFMHLEVNTEVYQFAVGDKFTLS 48
>gi|405969390|gb|EKC34364.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Crassostrea gigas]
Length = 83
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146
YVSYGGLLM L+GD + + FE+D ++LL++KL
Sbjct: 48 YVSYGGLLMRLQGDANNLHGFEVDSFVYLLIKKL 81
>gi|332027635|gb|EGI67703.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Acromyrmex echinatior]
Length = 161
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 94 GKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLF 140
G L ++ D +S YVS+GGLLM L+GD + + FE+DQ ++
Sbjct: 90 GVLLRVRDSTKARSA----YVSFGGLLMRLQGDANNLHGFEIDQHIW 132
>gi|357489369|ref|XP_003614972.1| hypothetical protein MTR_5g061920 [Medicago truncatula]
gi|355516307|gb|AES97930.1| hypothetical protein MTR_5g061920 [Medicago truncatula]
Length = 54
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Query: 79 GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIY 113
G R+++AD YEY+M+GKL ++ EGSG KA+++
Sbjct: 3 GNRQSIADNYEYVMYGKLSRV-TEGSGGREKAQVF 36
>gi|440492271|gb|ELQ74853.1| RNA polymerase subunit 8 [Trachipleistophora hominis]
Length = 171
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 19/126 (15%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+++ ++ VE ID D K F+K+S++ Q + +D +S L+ ++ DK + +
Sbjct: 50 VYKHVYTVETIDKDKKIFNKLSKLYLADQA--YKLTIDYHSLLFKPKINDKIEIVI---- 103
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKG 125
Y A + + + YEY++ G ++ GK + I VS+GG+LM +
Sbjct: 104 ---------YKGILAEEEVPECYEYVLQGHCYR-NKLADGKRI---IGVSFGGMLMEMIV 150
Query: 126 DPSYVS 131
D + V+
Sbjct: 151 DENDVN 156
>gi|378755755|gb|EHY65781.1| hypothetical protein NERG_01388 [Nematocida sp. 1 ERTm2]
Length = 130
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 18/137 (13%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+F + F + +D DGK FD+VSR N + +L+D ++ L+ + D+ +A+ T
Sbjct: 3 IFAESFTLSAVDVDGKVFDEVSR--GVFTNDGVTLLMDYHTGLFCHKKMDRVNIAI-FTE 59
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIM-HGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
D T K + +KY Y+M +G +++ +G+ + I +S+ GLL+ +
Sbjct: 60 EEDFT----------EKDIPEKYAYLMGNGVVYQTKTDGN----RQIIDISFSGLLVNIN 105
Query: 125 GDPSYVSHFELDQRLFL 141
+ S + + +RL++
Sbjct: 106 VETSRIKVPQAHKRLYI 122
>gi|294931337|ref|XP_002779840.1| hypothetical protein Pmar_PMAR009850 [Perkinsus marinus ATCC 50983]
gi|239889526|gb|EER11635.1| hypothetical protein Pmar_PMAR009850 [Perkinsus marinus ATCC 50983]
Length = 87
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 112 IYVSYGGLLMMLKGDPSYVSH-FELDQRLFLLMRKL 146
IYVS+GGLLM L+ S V LD RL+LLMRK+
Sbjct: 51 IYVSFGGLLMKLEAQRSDVDEAIRLDDRLYLLMRKV 86
>gi|154503669|ref|ZP_02040729.1| hypothetical protein RUMGNA_01493 [Ruminococcus gnavus ATCC 29149]
gi|153795769|gb|EDN78189.1| LPXTG-motif cell wall anchor domain protein [Ruminococcus gnavus
ATCC 29149]
Length = 2719
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 14 EKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLN-LDGTPD 72
+ I PDG+ + ++ ++H+ Y+L + P V D+ T A+ + LDG
Sbjct: 252 QMIYPDGEDQEYLTYSKSHN-----YVLSQKFNSDKPELVADQLTEKAANGVQWLDGEHA 306
Query: 73 TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY--GGLLMMLKGDPSYV 130
G PG +YI+ G ++ GS KS+ +YV Y G + + G+P Y
Sbjct: 307 DGRTKPGQLYVEVSGKKYILIGNESQLRAIGSNKSVTPRLYVYYKPGLVTGLFGGNPFYS 366
Query: 131 SHFELDQRLFL 141
++ D L L
Sbjct: 367 PYYPGDADLGL 377
>gi|336433341|ref|ZP_08613163.1| hypothetical protein HMPREF0991_02282 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336016558|gb|EGN46339.1| hypothetical protein HMPREF0991_02282 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 2706
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 14 EKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLN-LDGTPD 72
+ I PDG+ + ++ ++H+ Y+L + P V D+ T A+ + LDG
Sbjct: 240 QMIYPDGEDQEYLTYSKSHN-----YVLSQKFNSDKPELVADQLTEKAANGVQWLDGEHA 294
Query: 73 TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSY--GGLLMMLKGDPSYV 130
G PG +YI+ G ++ GS KS+ +YV Y G + + G+P Y
Sbjct: 295 DGRTKPGQLYVEVSGKKYILIGNESQLRAIGSNKSVTPRLYVYYKPGLVTGLFGGNPFYS 354
Query: 131 SHFELDQRLFL 141
++ D L L
Sbjct: 355 PYYPGDADLGL 365
>gi|357500995|ref|XP_003620786.1| hypothetical protein MTR_6g090440 [Medicago truncatula]
gi|355495801|gb|AES77004.1| hypothetical protein MTR_6g090440 [Medicago truncatula]
Length = 59
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 122 MLKGDPSYVSHFELDQRLFLLMRK 145
ML+GDPS+ F +DQ+LFLL+RK
Sbjct: 1 MLRGDPSHCVKFAVDQKLFLLIRK 24
>gi|50555297|ref|XP_505057.1| acetate--CoA ligase [Yarrowia lipolytica CLIB122]
gi|49650927|emb|CAG77864.1| YALI0F05962p [Yarrowia lipolytica CLIB122]
Length = 657
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 48 LYPMRVGDKFTMALAHTLNLDGTPD-----TGYYTPGARKTLADKYEYIMHG--KLFKIG 100
L P+ V + + L +T GTP TG Y GA L KY + +HG KLF G
Sbjct: 254 LAPVPVASEDPIFLLYTSGSTGTPKGLAHATGGYLLGA--ALTAKYVFDIHGDDKLFTAG 311
Query: 101 DEGSGKSLKAEIYVSYGGLLM-----MLKGDPSYVS 131
D G + YV YG L++ + +G P+Y S
Sbjct: 312 DVG---WITGHTYVLYGPLMLGATTVVFEGTPAYPS 344
>gi|387593198|gb|EIJ88222.1| hypothetical protein NEQG_01666 [Nematocida parisii ERTm3]
gi|387596089|gb|EIJ93711.1| hypothetical protein NEPG_01283 [Nematocida parisii ERTm1]
Length = 134
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 18/137 (13%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+F + F + ID DGK FD+VSR N +++D ++ L+ + DK +AL
Sbjct: 3 IFVNSFTLSDIDVDGKAFDEVSR--GVFTNESTTLIMDYHAGLFNHKKMDKVNIALF--- 57
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIM-HGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
+ +T K + +KY Y+M +G +++ G+ + I +S+ GLL+ L
Sbjct: 58 -----SEEADFT---EKDIPEKYGYLMGNGIVYETKINGN----RQTIDISFSGLLVSLD 105
Query: 125 GDPSYVSHFELDQRLFL 141
+ + +RL++
Sbjct: 106 IEVGIIKDINNYKRLYI 122
>gi|401826993|ref|XP_003887589.1| RNA polymerase subunit Rpb8 [Encephalitozoon hellem ATCC 50504]
gi|392998595|gb|AFM98608.1| RNA polymerase subunit Rpb8 [Encephalitozoon hellem ATCC 50504]
Length = 121
Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 27/120 (22%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+ D F + ID +GK + KVSR+ + Q+ + + LD N+ L VG + + +
Sbjct: 3 ILADSFKITDIDKEGKLYTKVSRL--YMQSPTISIALDYNTTLCKFHVGHAVEVRIFRGI 60
Query: 66 --NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMML 123
N+D Y+ +G+++ + GS S+ A S+GGLL+++
Sbjct: 61 HENIDCF-------------------YLAYGRVYSVEHRGSRVSITA----SFGGLLLIM 97
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.140 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,413,314,000
Number of Sequences: 23463169
Number of extensions: 97953259
Number of successful extensions: 187612
Number of sequences better than 100.0: 389
Number of HSP's better than 100.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 186578
Number of HSP's gapped (non-prelim): 394
length of query: 146
length of database: 8,064,228,071
effective HSP length: 110
effective length of query: 36
effective length of database: 9,778,246,777
effective search space: 352016883972
effective search space used: 352016883972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)