BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032138
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q923G2|RPAB3_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus
musculus GN=Polr2h PE=2 SV=3
Length = 150
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>sp|P52434|RPAB3_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo
sapiens GN=POLR2H PE=1 SV=4
Length = 150
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGK-SLKAEIYVSYGGLLM 121
L DGT D G Y P R + AD++EY+M+GK+++I GDE S + + + YVSYGGLLM
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123
Query: 122 MLKGDPSYVSHFELDQRLFLLMRKL 146
L+GD + + FE+D R++LLM+KL
Sbjct: 124 RLQGDANNLHGFEVDSRVYLLMKKL 148
>sp|Q54YW8|RPAB3_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc3
OS=Dictyostelium discoideum GN=polr2h PE=3 SV=1
Length = 142
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 100/141 (70%), Gaps = 3/141 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFED F V++IDPDGKKFD+VSR +S+N +M + +D+ + +YP+ ++F M LA +
Sbjct: 4 ILFEDTFEVKEIDPDGKKFDRVSRFVCYSENYEMDLQIDIATHIYPLG-HERFKMVLASS 62
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
LNLDG+ D + +LADKY+Y+M+GK+FK E S S K ++ S+GGLL++L+
Sbjct: 63 LNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIFKYQKENS--SSKVSVFASFGGLLVLLQ 120
Query: 125 GDPSYVSHFELDQRLFLLMRK 145
GDP Y+ ELD R++LL++K
Sbjct: 121 GDPRYLPGIELDARIYLLIKK 141
>sp|A8XT81|RPAB3_CAEBR Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3
OS=Caenorhabditis briggsae GN=rpb-8 PE=3 SV=1
Length = 148
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DKF + LA T
Sbjct: 4 IIFDDMFSVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK-SLKAEIYVSYGGLLMML 123
L DG D G Y P A +YEY+M+GK++++ D+ SG + Y S+GGLLM L
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDSGTDGGQLAAYASFGGLLMRL 123
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
KG+ + FE+D L+LLM+K
Sbjct: 124 KGEAINLHGFEVDMNLYLLMKK 145
>sp|Q19826|RPAB3_CAEEL Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3
OS=Caenorhabditis elegans GN=rpb-8 PE=1 SV=1
Length = 148
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DK + LA T
Sbjct: 4 IIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKVRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK-SLKAEIYVSYGGLLMML 123
L DG D G Y P A +YEY+M+GK++++ D+ +G K Y S+GGLLM L
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTGTDGGKLAAYASFGGLLMRL 123
Query: 124 KGDPSYVSHFELDQRLFLLMRK 145
KG+ + FE+D L+LLM+K
Sbjct: 124 KGEAINLHGFEVDMNLYLLMKK 145
>sp|P20436|RPAB3_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPB8 PE=1 SV=1
Length = 146
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 15/153 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++DP +++KV RIEA S D L LD+N EL+P+ D T+
Sbjct: 1 MSN-TLFDDIFQVSEVDP--GRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTV 57
Query: 60 ALAHTLNLDGTP-----DTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEI 112
+A +LNL+ TP T + P ++LAD Y+Y+M+G +K E K L A +
Sbjct: 58 TIASSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKF--EEVSKDLIA-V 114
Query: 113 YVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145
Y S+GGLLM L+G+ +++ + + +LL+R+
Sbjct: 115 YYSFGGLLMRLEGNYRNLNNLK-QENAYLLIRR 146
>sp|Q92399|RPAB3_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb8 PE=1 SV=2
Length = 125
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 82/145 (56%), Gaps = 20/145 (13%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS VL ++IF V +D +K+ +VSRI A S DM + LD+NS++YP+ F++
Sbjct: 1 MSESVLLDEIFTVTSVDK--QKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQ 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
+ LN +PD L + +YIM+GK++++ + K K +YVS+GGLL
Sbjct: 59 ITSNLN---SPD-----------LKEAADYIMYGKVYRVEE---AKDEKVSVYVSFGGLL 101
Query: 121 MMLKGDPSYVSHFELDQRLFLLMRK 145
M ++G + LD ++LL+R+
Sbjct: 102 MAIEGSHRKLYRLSLDH-VYLLLRR 125
>sp|B5FCV4|ILVC_VIBFM Ketol-acid reductoisomerase OS=Vibrio fischeri (strain MJ11)
GN=ilvC PE=3 SV=1
Length = 494
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 82 KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK--GDPSYVSHFELDQRL 139
K +AD E GKL + G E ++LK +GG+ M+ +P+ V FEL + L
Sbjct: 239 KMIADGIEPGYAGKLLQYGWETITEALK------FGGVTHMMDRLSNPAKVKAFELSEEL 292
Query: 140 FLLMRKL 146
LMR L
Sbjct: 293 KELMRPL 299
>sp|Q5E1S3|ILVC_VIBF1 Ketol-acid reductoisomerase OS=Vibrio fischeri (strain ATCC 700601
/ ES114) GN=ilvC PE=3 SV=1
Length = 494
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 82 KTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK--GDPSYVSHFELDQRL 139
K +AD E GKL + G E ++LK +GG+ M+ +P+ V FEL + L
Sbjct: 239 KMIADGIEPGYAGKLLQYGWETITEALK------FGGVTHMMDRLSNPAKVKAFELSEEL 292
Query: 140 FLLMRKL 146
LMR L
Sbjct: 293 KELMRPL 299
>sp|C7GWV6|HXT4_YEAS2 Low-affinity glucose transporter HXT4 OS=Saccharomyces cerevisiae
(strain JAY291) GN=HXT4 PE=3 SV=1
Length = 576
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 44 VNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKL 96
VNSE +P+RV K MA+A N G++TP + Y Y+ G L
Sbjct: 457 VNSETFPLRVKSK-CMAIAQACNWIWGFLIGFFTPFISNAIDFYYGYVFMGCL 508
>sp|A9B5Y6|KCY_HERA2 Cytidylate kinase OS=Herpetosiphon aurantiacus (strain ATCC 23779
/ DSM 785) GN=cmk PE=3 SV=1
Length = 229
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 57 FTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYI 91
FTM HT+ +DG +G T G K LAD + YI
Sbjct: 3 FTMTTPHTIAIDGPAASGKSTLG--KLLADHFGYI 35
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,037,745
Number of Sequences: 539616
Number of extensions: 2380291
Number of successful extensions: 4620
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4600
Number of HSP's gapped (non-prelim): 12
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)