Query 032138
Match_columns 146
No_of_seqs 104 out of 200
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 16:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3i_A DNA-directed RNA polyme 100.0 1.9E-70 6.5E-75 424.0 13.6 145 1-146 1-148 (150)
2 1a1d_A RNA polymerase; RPB8, O 100.0 1.1E-65 3.6E-70 395.9 15.9 138 1-145 1-146 (146)
3 3h0g_H DNA-directed RNA polyme 100.0 1.6E-61 5.6E-66 364.6 2.9 125 1-145 1-125 (125)
4 4ayb_G DNA-directed RNA polyme 99.0 1.1E-10 3.8E-15 88.3 1.4 113 12-145 14-130 (132)
5 3i2k_A Cocaine esterase; alpha 73.5 10 0.00034 33.2 7.5 54 12-66 463-529 (587)
6 3iii_A COCE/NOND family hydrol 62.3 16 0.00056 32.0 6.5 55 12-66 428-518 (560)
7 2b9v_A Alpha-amino acid ester 59.8 25 0.00084 31.2 7.2 54 12-65 506-580 (652)
8 1mpx_A Alpha-amino acid ester 52.8 45 0.0015 29.1 7.7 54 12-65 496-570 (615)
9 1fr3_A MOP, molybdate/tungstat 40.6 57 0.0019 19.4 5.1 51 91-145 8-60 (67)
10 1gut_A Mopii, molybdate bindin 34.9 69 0.0024 19.3 4.5 50 91-144 8-60 (68)
11 1btq_A BAND 3 anion transport 34.7 7.8 0.00027 21.2 -0.1 8 113-120 17-24 (26)
12 1lns_A X-prolyl dipeptidyl ami 34.7 52 0.0018 29.8 5.3 28 37-64 704-731 (763)
13 2vb2_X Copper protein, cation 33.1 1.1E+02 0.0037 20.5 7.0 51 8-64 17-75 (88)
14 2qcp_X Cation efflux system pr 31.0 1.1E+02 0.0039 20.0 7.0 51 8-64 9-67 (80)
15 3e0e_A Replication protein A; 30.6 1.1E+02 0.0039 20.3 5.4 34 25-59 38-72 (97)
16 4f27_A Clumping factor B; DEV- 29.0 32 0.0011 27.6 2.7 35 33-70 57-91 (363)
17 3kt9_A Aprataxin; FHA domain, 21.0 39 0.0013 23.6 1.5 8 25-32 39-46 (102)
18 2cqa_A RUVB-like 2; TIP48, TIP 20.8 1.3E+02 0.0046 20.9 4.2 36 23-60 31-72 (95)
19 2ejx_A ST0812; arcaea, unknown 20.1 50 0.0017 24.7 2.0 14 87-100 57-70 (139)
No 1
>2f3i_A DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide; RNA polymerase II, transferase; NMR {Homo sapiens}
Probab=100.00 E-value=1.9e-70 Score=424.00 Aligned_cols=145 Identities=49% Similarity=0.887 Sum_probs=137.2
Q ss_pred CCcccceeeeEEEeeeCCCCCccceEeeEEEEecCCceEEEEEecccceecccCCEEEEEEeeecCCCCCCCCCCCCCC-
Q 032138 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG- 79 (146)
Q Consensus 1 ms~~~Lfed~F~V~~iD~dgKkfdrVSRi~~~S~~~~~~l~LDiNtelypl~~~d~~~l~LassL~~dg~~d~~~~~~~- 79 (146)
|| ++||||+|+|++|||+||||||||||.|+|++++|+|+|||||||||+++||+|+|+||+||++||+|+++.|+|.
T Consensus 1 Ms-~~LfeD~F~V~~iDp~GKkfdrVSRi~~~S~~~~~~l~LDiNtelyP~~~gd~~~l~LastL~~dg~~d~~~~~~~~ 79 (150)
T 2f3i_A 1 MA-GILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTD 79 (150)
T ss_dssp CC-CCCCEEEEEEEEEECCCCSSTTEEEEEEEESSSCCEEEEEEECTTSSSTTCCCEEEECSCCCCSSSSSTTTCSSSTT
T ss_pred CC-CceeeeeEEEEEECCCCCeeeeEEEEEEEeCCCceEEEEEecccEeccCCCCEEEEEEecccccCCCCCCCcccccc
Confidence 66 8999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCccccccccEEEeeEEEEeecCCCCC--cceEEEEEEecceeeEEEcCCCCCCCCCCCCeEEEEEeeC
Q 032138 80 ARKTLADKYEYIMHGKLFKIGDEGSGK--SLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRKL 146 (146)
Q Consensus 80 ~~~slad~ydYVMyGkVYk~e~~~~~~--~~~~~vy~SFGGLLM~L~G~~~~l~~l~~d~~vYLL~rk~ 146 (146)
++++|||+|||||||||||||+++++. .++++||||||||||+|+|++++|++|++|++|||||||+
T Consensus 80 ~~~slad~ydYVM~GkvYk~e~~~~~~~~~~~~~vY~SFGGLLM~L~G~~~~L~~l~~d~~vYLLirk~ 148 (150)
T 2f3i_A 80 DRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKL 148 (150)
T ss_dssp STTSCTTTTSEEECEEEECCSSCCSSSSCCSSEEEEEEETTEEEEEEECHHHHTCCSTTSTTSEEEEEC
T ss_pred CCcccccccCEEEeeEEEEEeecCCCccccceEEEEEEcceEeEEEEcCHHHCccccCCCEEEEEEEec
Confidence 688999999999999999999864211 2899999999999999999999999999999999999995
No 2
>1a1d_A RNA polymerase; RPB8, OB fold, eukaryotic, yeast, nucleotidyltransferase; NMR {Saccharomyces cerevisiae} SCOP: b.40.4.8 PDB: 1i3q_H 1i50_H 1i6h_H 1k83_H* 1nik_H 1nt9_H 1pqv_H 1r5u_H 1r9s_H* 1r9t_H* 1sfo_H* 1twa_H* 1twc_H* 1twf_H* 1twg_H* 1twh_H* 1wcm_H 1y1v_H 1y1w_H 1y1y_H ...
Probab=100.00 E-value=1.1e-65 Score=395.94 Aligned_cols=138 Identities=39% Similarity=0.732 Sum_probs=132.2
Q ss_pred CCcccceeeeEEEeeeCCCCCccceEeeEEEEecCCceE-EEEEecccceecccCCEEEEEEeeecCCCCCC-----CCC
Q 032138 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMY-MLLDVNSELYPMRVGDKFTMALAHTLNLDGTP-----DTG 74 (146)
Q Consensus 1 ms~~~Lfed~F~V~~iD~dgKkfdrVSRi~~~S~~~~~~-l~LDiNtelypl~~~d~~~l~LassL~~dg~~-----d~~ 74 (146)
|| ++||||+|+|++|||+ ||||||||.|+|++++|+ |+|||||||||+++||+|+|+||+||++||++ +++
T Consensus 1 Ms-~~LfeD~F~V~~iDp~--kfdrVSRi~~~S~~~~~~~l~LDiNtelyPv~~gd~l~l~LastL~~dg~~~~~~~d~~ 77 (146)
T 1a1d_A 1 MS-NTLFDDIFQVSEVDPG--RYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDTPANDSSATR 77 (146)
T ss_pred CC-CceeeeeEEEEecChh--HCceeEEEEEEeCCCCceEEEEEecccEeccCCCCEEEEEEecccCcCCCcccccccCc
Confidence 66 8999999999999998 799999999999999999 99999999999999999999999999999999 899
Q ss_pred CCCC--CCCccccccccEEEeeEEEEeecCCCCCcceEEEEEEecceeeEEEcCCCCCCCCCCCCeEEEEEee
Q 032138 75 YYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145 (146)
Q Consensus 75 ~~~~--~~~~slad~ydYVMyGkVYk~e~~~~~~~~~~~vy~SFGGLLM~L~G~~~~l~~l~~d~~vYLL~rk 145 (146)
.|++ +++++|||+|||||||||||||+ + ++++++||||||||||+|+|++++|++|++| +|||||||
T Consensus 78 ~~~~~~~~~~slad~ydYVM~GkvYk~e~-~--~~~~~~vy~SFGGLLM~L~G~~~~L~~l~~d-~vYLLirk 146 (146)
T 1a1d_A 78 SWRPPQAGDRSLADDYDYVMYGTAYKFEE-V--SKDLIAVYYSFGGLLMRLEGNYRNLNNLKQE-NAYLLIRR 146 (146)
T ss_pred cccccccCCcccccccCEEEeeEEEEEee-c--CCceEEEEEEcceEeEEEecCHHHCCcCccC-eEEEEEeC
Confidence 9987 57889999999999999999997 3 3699999999999999999999999999999 99999997
No 3
>3h0g_H DNA-directed RNA polymerases I, II, and III subunit rpabc3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-61 Score=364.57 Aligned_cols=125 Identities=38% Similarity=0.733 Sum_probs=117.6
Q ss_pred CCcccceeeeEEEeeeCCCCCccceEeeEEEEecCCceEEEEEecccceecccCCEEEEEEeeecCCCCCCCCCCCCCCC
Q 032138 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGA 80 (146)
Q Consensus 1 ms~~~Lfed~F~V~~iD~dgKkfdrVSRi~~~S~~~~~~l~LDiNtelypl~~~d~~~l~LassL~~dg~~d~~~~~~~~ 80 (146)
||+++||||+|+|++|||+ ||||||||.|+|++++|+|+|||||||||+++||+|+|+||+||++ ++ |
T Consensus 1 m~~~~LfeD~F~V~~id~~--kfdrVSRi~~~S~~~~~~l~LDiNtelyP~~~gd~~~l~LassL~~---~d---~---- 68 (125)
T 3h0g_H 1 MSESVLLDEIFTVTSVDKQ--KYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSNLNS---PD---L---- 68 (125)
T ss_dssp -CCCCCCCBCCCCCCEECS--SCSSCCEEECCCSSSCCCBEEECCTTTSCCCSSCCCCEECCCCCCC---SH---H----
T ss_pred CCCcEEEEeEEEEeeCChh--hCCcEEEEEEEeCCCceEEEEEecceEEecCCCCEEEEEEeccCCc---hh---h----
Confidence 8899999999999999998 7999999999999999999999999999999999999999999996 22 4
Q ss_pred CccccccccEEEeeEEEEeecCCCCCcceEEEEEEecceeeEEEcCCCCCCCCCCCCeEEEEEee
Q 032138 81 RKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDPSYVSHFELDQRLFLLMRK 145 (146)
Q Consensus 81 ~~slad~ydYVMyGkVYk~e~~~~~~~~~~~vy~SFGGLLM~L~G~~~~l~~l~~d~~vYLL~rk 145 (146)
||+|||||||||||+|++ +++++++|||||||||+|+|++++|++|+ |++|||||||
T Consensus 69 ----ad~ydYVMyGkvYk~e~~---~~~~~~vy~SFGGLLM~L~G~~~~l~~l~-~~~vYLLirk 125 (125)
T 3h0g_H 69 ----KEAADYIMYGKVYRVEEA---KDEKVSVYVSFGGLLMAIEGSHRKLYRLS-LDHVYLLLRR 125 (125)
T ss_dssp ----HHSSSEEECCCCCCEECC---SSSCEEECCEETTEECCEEECSSSCSCCC-CSCCCEEECC
T ss_pred ----hccccEEEEeEEEEEeec---CCceEEEEEEecCEEEEEEeCHHHCcccC-CCEEEEEEeC
Confidence 899999999999999863 57999999999999999999999999999 9999999997
No 4
>4ayb_G DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_G 2y0s_G 2waq_G 4b1o_G 4b1p_V 3hkz_G
Probab=98.97 E-value=1.1e-10 Score=88.26 Aligned_cols=113 Identities=12% Similarity=0.256 Sum_probs=79.4
Q ss_pred EEeeeCCCCCccceEeeEEEEecCCceEEEEEecccceecccCCEEEEEEeeecCCCCCCCCCCCCCCCCccccccccEE
Q 032138 12 VVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYI 91 (146)
Q Consensus 12 ~V~~iD~dgKkfdrVSRi~~~S~~~~~~l~LDiNtelypl~~~d~~~l~LassL~~dg~~d~~~~~~~~~~slad~ydYV 91 (146)
+|++|.| | +.-.+.|+.+++.+ .++++|+|.+|.++.+||++++.|..+.- ...+. |++
T Consensus 14 kI~sIek-g-~l~~l~i~~~~C~d--~~I~~Di~~~i~~f~~gekV~i~ISrekp----------------~~~~~-dFC 72 (132)
T 4ayb_G 14 EINSIER-G-SLKNLSIIHMSCND--FNISFDIIDSINIFSQKEKVKAFISKNRL----------------SYTND-DFC 72 (132)
T ss_dssp CCCCEEE-C-SSTTEEEEECCBSS--EEEEEEEESTTCCCCSSCCCEEEEESSCC----------------CCCTT-SEE
T ss_pred EEeeEcc-c-ccCCeEEEEEecCC--EEEEEEhhhhhhcccCCCeEEEEEecCCc----------------ccccC-ccc
Confidence 4778888 4 48889999998855 99999999999999999999999987642 33343 788
Q ss_pred EeeEEEEeecCC-CCCcceEEEEEEecceeeEEEcCCCCC---CCCCCCCeEEEEEee
Q 032138 92 MHGKLFKIGDEG-SGKSLKAEIYVSYGGLLMMLKGDPSYV---SHFELDQRLFLLMRK 145 (146)
Q Consensus 92 MyGkVYk~e~~~-~~~~~~~~vy~SFGGLLM~L~G~~~~l---~~l~~d~~vYLL~rk 145 (146)
=||-|......+ +..+++..+.+|+||||..|.-+.+.+ .+|++.+++|+.+||
T Consensus 73 GhGYvVt~~k~~~~~~~~~~~~iISl~GlLvvi~s~k~~f~~~~~lk~MdkvY~cv~K 130 (132)
T 4ayb_G 73 GHGYIVTELKDSSSNNGNRYITIISLFGLLVKIISNKESFLKIHQLNVMDHIYFCVKK 130 (132)
T ss_dssp BCEEEEETTTTEEEETTEEEEEEESCCHHHHHHSCSSEEEEEEEC-------------
T ss_pred cceEEEEEeecccccCCceeEEEEEeeeEEEEEEccccccccccCCccccEEEEEEEc
Confidence 899998764332 124678999999999999999987633 568988999999997
No 5
>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A
Probab=73.51 E-value=10 Score=33.20 Aligned_cols=54 Identities=9% Similarity=0.039 Sum_probs=43.1
Q ss_pred EEeeeCCCCCccceEeeEEEEe-------------cCCceEEEEEecccceecccCCEEEEEEeeecC
Q 032138 12 VVEKIDPDGKKFDKVSRIEAHS-------------QNCDMYMLLDVNSELYPMRVGDKFTMALAHTLN 66 (146)
Q Consensus 12 ~V~~iD~dgKkfdrVSRi~~~S-------------~~~~~~l~LDiNtelypl~~~d~~~l~LassL~ 66 (146)
++.+++|+|+ --.|++-..+- .+.-.++.++++.--+-+++|.+++|.|+++--
T Consensus 463 ~L~dV~pdG~-~~~vt~g~lr~~~r~~~~~~~~l~pg~~~~v~i~L~~~~~~f~~Ghrlrl~i~ss~~ 529 (587)
T 3i2k_A 463 KLVDVFPDGR-AIALCDGIVRMRYRETLVNPTLIEAGEIYEVAIDMLATSNVFLPGHRIMVQVSSSNF 529 (587)
T ss_dssp EEEEECTTSC-EEEEEEEEEEGGGSSCSSSCCCCCTTCCEEEEEEEEEEEEEECTTCEEEEEEESCCB
T ss_pred EEEEECCCCc-EEEeeeeeeeccccccccccccCCCCCEEEEEEEehhheeEECCCCEEEEEEECCCC
Confidence 5679999997 55777777762 123468889999999999999999999999843
No 6
>3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A*
Probab=62.25 E-value=16 Score=32.03 Aligned_cols=55 Identities=9% Similarity=0.110 Sum_probs=41.9
Q ss_pred EEeeeCCCCCccc----------eEeeEEEEec--------------------------CCceEEEEEecccceecccCC
Q 032138 12 VVEKIDPDGKKFD----------KVSRIEAHSQ--------------------------NCDMYMLLDVNSELYPMRVGD 55 (146)
Q Consensus 12 ~V~~iD~dgKkfd----------rVSRi~~~S~--------------------------~~~~~l~LDiNtelypl~~~d 55 (146)
++.+++|+|+... +|++-..+-. +.-.++.+++..--+-+++|+
T Consensus 428 ~L~dv~p~G~~~~~~~~~~~~~~~vt~G~lr~s~r~~d~~~s~~~~P~~~~~~~~pl~pG~~~~v~i~l~pt~~~f~~Gh 507 (560)
T 3iii_A 428 GIKKLDRRGNEVNFPDFNHIENGQVATGWLRVSHRELDQEKSSIAQPWHKHETELKLSQDEIVPVEIELLPSGTLFKQGE 507 (560)
T ss_dssp EEEEECTTSCBCCEEETTTEEEECSEEEEEEGGGCCBCTTTCCSSCCCBCCSSCCCCCTTCCEEEEEEEEEEEEEECTTC
T ss_pred EEEEECCCCcEEeccccccccCCcccceeeEcccccccccccccCCCcCCCcccccCCCCCEEEEEEEecccEEEECCCC
Confidence 4568999998654 4777777621 123678888888889999999
Q ss_pred EEEEEEeeecC
Q 032138 56 KFTMALAHTLN 66 (146)
Q Consensus 56 ~~~l~LassL~ 66 (146)
+++|.|+++--
T Consensus 508 rlrl~Isss~~ 518 (560)
T 3iii_A 508 TLEVVVKGSEI 518 (560)
T ss_dssp EEEEEEESSCS
T ss_pred EEEEEEeccCC
Confidence 99999998853
No 7
>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A
Probab=59.78 E-value=25 Score=31.22 Aligned_cols=54 Identities=7% Similarity=0.031 Sum_probs=41.8
Q ss_pred EEeeeCCCCCc--------cceEeeEEEEec-------------CCceEEEEEecccceecccCCEEEEEEeeec
Q 032138 12 VVEKIDPDGKK--------FDKVSRIEAHSQ-------------NCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65 (146)
Q Consensus 12 ~V~~iD~dgKk--------fdrVSRi~~~S~-------------~~~~~l~LDiNtelypl~~~d~~~l~LassL 65 (146)
++.+++|+|+. .-.|++-..+-. +.-.+++++.+.--+-+++|.+++|.|++|-
T Consensus 506 ~L~DV~pdg~~~~~~~~g~~~~i~~g~~r~~~r~~~~~~~~l~pg~~~~v~v~L~~~~~~f~~GhRlrl~v~ss~ 580 (652)
T 2b9v_A 506 KLIDVQPAMTPDDPKMGGYELPVSMDIFRGRYRKDFAKPEALQPDATLHYHFTLPAVNHVFAKGHRIMVQIQSSW 580 (652)
T ss_dssp EEEEECCSCCTTSGGGTTCEEEEEEEEEEGGGSSCSSSCCCCCTTCCEEEEEECCCEEEEECTTCEEEEEEESCC
T ss_pred EEEEECCCCcccccccCCceEEEeeeeEeccccCCccccccCCCCcEEEEEEEeccceeEECCCCEEEEEEecCC
Confidence 56789999853 345666665532 2247899999999999999999999999984
No 8
>1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21
Probab=52.79 E-value=45 Score=29.06 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=40.0
Q ss_pred EEeeeCCCCCc--------cceEeeEEEEec-------------CCceEEEEEecccceecccCCEEEEEEeeec
Q 032138 12 VVEKIDPDGKK--------FDKVSRIEAHSQ-------------NCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65 (146)
Q Consensus 12 ~V~~iD~dgKk--------fdrVSRi~~~S~-------------~~~~~l~LDiNtelypl~~~d~~~l~LassL 65 (146)
++.+++|+|+. --.|++-..+-. +.-.+++++++.--+-+++|.+++|.|+++-
T Consensus 496 ~L~Dv~pdg~~~~~~~~g~~~~i~~g~~r~~~r~~~~~~~~l~pg~~~~v~i~L~~~~~~f~~Ghrlrl~v~ss~ 570 (615)
T 1mpx_A 496 KLIDVYPEEMASNPKMGGYELPVSLAIFRGRYRESFSTPKPLTSNQPLAFQFGLPTANHTFQPGHRVMVQVQSSL 570 (615)
T ss_dssp EEEEECCSCCTTSGGGTTCEEEEEEEEEEGGGSSCSSSCCCCCTTCCEEEEEECCCEEEEECTTCEEEEEEESCC
T ss_pred EEEEECCCCcccccccCCeEEEEecceEeeeccCccccccccCCCCEEEEEEEeccceeEECCCCEEEEEEecCC
Confidence 45688998853 234455444421 2347899999999999999999999999984
No 9
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=40.57 E-value=57 Score=19.37 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=32.7
Q ss_pred EEeeEEEEeecCCCCCcceEEEEEEecce--eeEEEcCCCCCCCCCCCCeEEEEEee
Q 032138 91 IMHGKLFKIGDEGSGKSLKAEIYVSYGGL--LMMLKGDPSYVSHFELDQRLFLLMRK 145 (146)
Q Consensus 91 VMyGkVYk~e~~~~~~~~~~~vy~SFGGL--LM~L~G~~~~l~~l~~d~~vYLL~rk 145 (146)
...|+|-+++.. +....+-+..||- .-.++-..-.--+++.++.+|+++|.
T Consensus 8 ~l~g~V~~i~~~----g~~~~v~l~~~~~~l~a~it~~s~~~l~L~~G~~V~~~ika 60 (67)
T 1fr3_A 8 KLEATVKEIVKG----TVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKA 60 (67)
T ss_dssp EEEEEEEEEEEC----SSEEEEEEEETTEEEEEEEEHHHHHHHTCCTTCEEEEEECG
T ss_pred EEEEEEEEEEeC----CceEEEEEEeCCCEEEEEeCHHHHHhCCCCCCCEEEEEEec
Confidence 467999999863 3456677777653 22333322222468899999999873
No 10
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=34.85 E-value=69 Score=19.26 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=33.0
Q ss_pred EEeeEEEEeecCCCCCcceEEEEEEec-c--eeeEEEcCCCCCCCCCCCCeEEEEEe
Q 032138 91 IMHGKLFKIGDEGSGKSLKAEIYVSYG-G--LLMMLKGDPSYVSHFELDQRLFLLMR 144 (146)
Q Consensus 91 VMyGkVYk~e~~~~~~~~~~~vy~SFG-G--LLM~L~G~~~~l~~l~~d~~vYLL~r 144 (146)
...|+|-+++.. +....+-+..| | |...++-+.-.--+|+.++.+|.++|
T Consensus 8 ~l~g~V~~i~~~----g~~~~V~l~~~~g~~l~a~it~~s~~~l~L~~G~~V~a~ik 60 (68)
T 1gut_A 8 QLKGKVVGLKKG----VVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVK 60 (68)
T ss_dssp EEEEEEEEEEEC----SSEEEEEEEETTSCEEEEEEEHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEEEEEEEeC----CceEEEEEEeCCCCEEEEEeCHHHHHHCCCCCCCEEEEEEe
Confidence 467999999863 34566666775 5 44444433322346888999999887
No 11
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=34.70 E-value=7.8 Score=21.22 Aligned_cols=8 Identities=13% Similarity=0.522 Sum_probs=6.1
Q ss_pred EEEeccee
Q 032138 113 YVSYGGLL 120 (146)
Q Consensus 113 y~SFGGLL 120 (146)
=+.||||+
T Consensus 17 aIaFGgLl 24 (26)
T 1btq_A 17 AITFGXXX 24 (26)
T ss_pred hhcccccc
Confidence 36799986
No 12
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Probab=34.68 E-value=52 Score=29.84 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=26.1
Q ss_pred ceEEEEEecccceecccCCEEEEEEeee
Q 032138 37 DMYMLLDVNSELYPMRVGDKFTMALAHT 64 (146)
Q Consensus 37 ~~~l~LDiNtelypl~~~d~~~l~Lass 64 (146)
-.+++++.+.-.|-+++|.+++|+|+++
T Consensus 704 ~~~v~v~L~~~~~~f~~GhrLrl~I~ss 731 (763)
T 1lns_A 704 WFTIKFELQPTIYHLEKADKLRVILYST 731 (763)
T ss_dssp CEEEEEECCCEEEEECTTCEEEEEEESC
T ss_pred EEEEEEEeccceEEECCCCEEEEEEEcC
Confidence 4689999999999999999999999988
No 13
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=33.11 E-value=1.1e+02 Score=20.47 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=33.5
Q ss_pred eeeEEEeeeCCCCCccceEeeEEEE-ec--C---CceEEEEEe--cccceecccCCEEEEEEeee
Q 032138 8 EDIFVVEKIDPDGKKFDKVSRIEAH-SQ--N---CDMYMLLDV--NSELYPMRVGDKFTMALAHT 64 (146)
Q Consensus 8 ed~F~V~~iD~dgKkfdrVSRi~~~-S~--~---~~~~l~LDi--Ntelypl~~~d~~~l~Lass 64 (146)
.-.=+|++||++.. .|..+ .. . .-|+|.+.+ +..|=.+++||++++.+...
T Consensus 17 ~~~G~V~~id~~~~------~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 17 SATGVVKGIDLESK------KITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp EEEEEEEEEETTTT------EEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCC------EEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEEEEe
Confidence 33447899999754 23332 11 1 137777765 46688999999999988654
No 14
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=31.03 E-value=1.1e+02 Score=19.99 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=33.5
Q ss_pred eeeEEEeeeCCCCCccceEeeEEEE-ec--C---CceEEEEEe--cccceecccCCEEEEEEeee
Q 032138 8 EDIFVVEKIDPDGKKFDKVSRIEAH-SQ--N---CDMYMLLDV--NSELYPMRVGDKFTMALAHT 64 (146)
Q Consensus 8 ed~F~V~~iD~dgKkfdrVSRi~~~-S~--~---~~~~l~LDi--Ntelypl~~~d~~~l~Lass 64 (146)
.-.=+|++||++..+ |..+ .. . .-|+|.+.+ +..|=.+++||++++.+...
T Consensus 9 ~~~G~V~~id~~~~~------iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 9 SATGVVKGIDLESKK------ITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp EEEEEEEEEETTTTE------EEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCE------EEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEEEEEe
Confidence 333478999997542 2222 11 1 137777765 46688999999999988654
No 15
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=30.64 E-value=1.1e+02 Score=20.27 Aligned_cols=34 Identities=6% Similarity=0.107 Sum_probs=23.5
Q ss_pred eEeeEEEEecCCceEEE-EEecccceecccCCEEEE
Q 032138 25 KVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59 (146)
Q Consensus 25 rVSRi~~~S~~~~~~l~-LDiNtelypl~~~d~~~l 59 (146)
+|..+...-++..+.++ -|=..++ ++++||.+.+
T Consensus 38 ~v~~~~l~DeTG~I~~tlW~~~~~~-~i~~Gdvv~i 72 (97)
T 3e0e_A 38 QLKSLFLKDDTGSIRGTLWNELADF-EVKKGDIAEV 72 (97)
T ss_dssp EEEEEEEEETTEEEEEEEEGGGGGC-CCCTTCEEEE
T ss_pred EEEEEEEECCCCcEEEEEECCcccc-ccCCCCEEEE
Confidence 47777777667677777 4555555 7788888877
No 16
>4f27_A Clumping factor B; DEV-IGG fold, protein-peptide complex, fibronogen, cell SURF adhesion-blood clotting complex; 1.92A {Staphylococcus aureus} PDB: 4f20_A 4f24_A 4f1z_A 3au0_A 3at0_A 3asw_A
Probab=29.04 E-value=32 Score=27.61 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=26.2
Q ss_pred ecCCceEEEEEecccceecccCCEEEEEEeeecCCCCC
Q 032138 33 SQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGT 70 (146)
Q Consensus 33 S~~~~~~l~LDiNtelypl~~~d~~~l~LassL~~dg~ 70 (146)
++.+.+...++++- .+++||.|+|-|...|.+.|.
T Consensus 57 ~~~~~l~~~f~~~~---~vk~GD~fti~lp~~l~~~~~ 91 (363)
T 4f27_A 57 SGNTFMAANFKVTG---QVKSGDYFTAKLPDSVTGNGD 91 (363)
T ss_dssp TCCEEEEEEEEESS---CCCTTCEEEEECCTTEESSBT
T ss_pred CceEEEEEEEEcCC---CCCCCCEEEEEcCCceEeccc
Confidence 44555666666654 389999999999999887653
No 17
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=21.00 E-value=39 Score=23.61 Aligned_cols=8 Identities=38% Similarity=0.468 Sum_probs=4.8
Q ss_pred eEeeEEEE
Q 032138 25 KVSRIEAH 32 (146)
Q Consensus 25 rVSRi~~~ 32 (146)
|+||-.|+
T Consensus 39 rcSR~h~~ 46 (102)
T 3kt9_A 39 KCSRQQVQ 46 (102)
T ss_dssp TSCSSCEE
T ss_pred cccCcceE
Confidence 47775544
No 18
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=20.79 E-value=1.3e+02 Score=20.89 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=29.3
Q ss_pred cceEeeEEEEecCCceEEEEEecccce------ecccCCEEEEE
Q 032138 23 FDKVSRIEAHSQNCDMYMLLDVNSELY------PMRVGDKFTMA 60 (146)
Q Consensus 23 fdrVSRi~~~S~~~~~~l~LDiNtely------pl~~~d~~~l~ 60 (146)
..++++|..++.+ |+-+||+-..+| .++.||-+.+-
T Consensus 31 ~~~~~~itLkT~d--~ek~l~lg~~i~e~L~kekV~~GDVI~Id 72 (95)
T 2cqa_A 31 GSKVGKLTLKTTE--METIYDLGTKMIESLTKDKVQAGDVITID 72 (95)
T ss_dssp SSCEEEEEEECSS--SEEEEEECSHHHHHHHHTTCCTTSEEEEE
T ss_pred cceEEEEEEEecC--CcEEEeCCHHHHHHHHHcCceeCCEEEEE
Confidence 3579999997755 999999999988 57889988763
No 19
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=20.12 E-value=50 Score=24.67 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=11.5
Q ss_pred cccEEEeeEEEEee
Q 032138 87 KYEYIMHGKLFKIG 100 (146)
Q Consensus 87 ~ydYVMyGkVYk~e 100 (146)
-++|.|||+||+=.
T Consensus 57 ~~~~~~~G~vy~s~ 70 (139)
T 2ejx_A 57 AFSYKVKGRVYKGV 70 (139)
T ss_dssp TEEEEEEEEEEEET
T ss_pred eEEEEEEEEEEEcC
Confidence 37899999999754
Done!