Query 032139
Match_columns 146
No_of_seqs 223 out of 1296
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:07:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00160 60S ribosomal protein 100.0 3.4E-52 7.3E-57 310.1 10.9 144 1-146 1-147 (147)
2 PRK06419 rpl15p 50S ribosomal 100.0 1.5E-50 3.3E-55 302.3 12.0 141 1-145 1-145 (148)
3 KOG1742 60s ribosomal protein 100.0 4.5E-39 9.7E-44 234.5 4.3 144 1-146 1-147 (147)
4 TIGR01071 rplO_bact ribosomal 100.0 2.1E-35 4.6E-40 220.0 10.0 126 4-143 12-145 (145)
5 PRK05592 rplO 50S ribosomal pr 100.0 1.9E-34 4.1E-39 215.1 10.9 126 4-145 13-146 (146)
6 PF00828 Ribosomal_L18e: Ribos 100.0 1.5E-32 3.3E-37 200.5 6.6 124 20-145 1-129 (129)
7 COG0200 RplO Ribosomal protein 100.0 3.7E-30 8E-35 192.6 11.2 129 11-145 9-151 (152)
8 KOG0846 Mitochondrial/chloropl 99.9 3.2E-22 6.9E-27 158.9 6.9 128 5-145 34-175 (274)
9 PRK04005 50S ribosomal protein 99.6 5E-15 1.1E-19 105.8 6.2 63 67-145 32-94 (111)
10 COG1727 RPL18A Ribosomal prote 99.2 2.3E-11 4.9E-16 87.5 5.8 63 67-145 43-105 (122)
11 PTZ00195 60S ribosomal protein 98.8 7.9E-09 1.7E-13 80.1 5.2 72 68-145 57-130 (198)
12 PTZ00469 60S ribosomal subunit 98.8 1E-08 2.2E-13 79.0 5.1 66 68-145 57-122 (187)
13 COG0200 RplO Ribosomal protein 97.8 1.2E-05 2.6E-10 60.5 2.4 43 6-48 15-65 (152)
14 KOG1714 60s ribosomal protein 94.1 0.04 8.6E-07 42.4 2.5 39 107-145 85-123 (188)
15 PF00828 Ribosomal_L18e: Ribos 91.9 0.026 5.7E-07 40.8 -1.3 34 15-48 5-41 (129)
16 PF10531 SLBB: SLBB domain; I 44.6 24 0.00052 21.6 2.4 27 112-141 6-32 (59)
17 PF08734 GYD: GYD domain; Int 35.6 40 0.00087 22.8 2.6 17 128-144 22-38 (91)
18 PF00542 Ribosomal_L12: Riboso 25.8 63 0.0014 20.8 2.1 16 129-144 52-67 (68)
19 PRK15078 polysaccharide export 25.5 1.5E+02 0.0032 25.3 4.9 67 71-141 222-288 (379)
20 COG0120 RpiA Ribose 5-phosphat 20.8 74 0.0016 25.5 2.0 34 105-143 124-157 (227)
21 COG0278 Glutaredoxin-related p 20.7 60 0.0013 23.0 1.3 20 40-60 15-34 (105)
No 1
>PTZ00160 60S ribosomal protein L27a; Provisional
Probab=100.00 E-value=3.4e-52 Score=310.06 Aligned_cols=144 Identities=72% Similarity=1.198 Sum_probs=133.2
Q ss_pred CCCcccccccccCccccCCCCCCCCCCCCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhhhh
Q 032139 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWS 80 (146)
Q Consensus 1 m~~r~kk~rk~RG~~s~G~G~~gq~r~~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L~~ 80 (146)
|++|.+|+||+|||+|||||++||||+|+||||+||+++|+|+||++|+|.||+|+||+.|+..++...+.+|||++||+
T Consensus 1 M~~r~kK~rK~RG~rt~G~G~~gkhR~~~GGrG~AG~~kH~~~~~~ky~p~~fGK~Gfr~~~~~~~~~~~~~INl~~L~~ 80 (147)
T PTZ00160 1 MPTRFKKCRKMRGHVSHGYGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRHFHLKKNKYYCPTINVDKLWS 80 (147)
T ss_pred CCcccccccCCCCCCccCCCCCCCCCCCCCCCcccCCCcceEEEeeecCCCccCCCCccCCccccccccCceeEHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998755666679999999999
Q ss_pred hcCcCeeccccc--CCCCeeecCCCCceEEecCCCC-CCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139 81 MVPQDVKAKASK--DNVPMIDVTQFGYFKVLGKGVL-PENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146 (146)
Q Consensus 81 ~~~~~~~i~~~~--~~~~li~~~~~g~vKvLG~G~l-~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~ 146 (146)
++++....+.++ .++++||..+.+++||||+|+| + +||+|+|..||++|+|+||+|||+|+++|
T Consensus 81 lv~~~~~~~~a~~~~~~~vIDl~~~g~~KVLG~G~l~~--~~v~Vka~~~Sk~A~ekIe~aGG~v~l~a 147 (147)
T PTZ00160 81 LVPEETRYKYAKKGDKAPVIDVTKAGYFKVLGKGHLPK--QPVIVKARYFSKKAEKKIKAVGGACVLTA 147 (147)
T ss_pred HhHHHHHHhhhhccCCceEEEeeccCceEEecCCeEcC--ccEEEEEeecCHHHHHHHHHcCCEEEEcC
Confidence 998765555542 7889999998999999999999 6 79999999999999999999999999875
No 2
>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed
Probab=100.00 E-value=1.5e-50 Score=302.27 Aligned_cols=141 Identities=36% Similarity=0.536 Sum_probs=126.6
Q ss_pred CCCcccccccccCccccCCCCCCCCCC--CCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhh
Q 032139 1 MTTRFKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKL 78 (146)
Q Consensus 1 m~~r~kk~rk~RG~~s~G~G~~gq~r~--~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L 78 (146)
|+++.+|+||+|||+|||||+++|||+ |+||||+||+++|+|+||++|+|.||||+||++|+. .+.+|.+|||++|
T Consensus 1 m~~~~~k~rk~RG~~t~G~G~~~~~R~~G~~GGrG~aG~~~h~~~~~~k~~p~~fpK~GF~~~~~--~~~~~~~INL~~L 78 (148)
T PRK06419 1 MIRKKKKSRKLRGSRTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYGPDWYGKHGFKRPPK--LIKEVSTINVGEL 78 (148)
T ss_pred CCcccccccCCCcCCCcCCCCcCcCCCCCCCCCCcccCCCcccceEeeeeCCCCCCCCCccCCCc--CcceeeeEEHHHH
Confidence 999999999999999999999999999 999999999999999999999999999999999753 3477899999999
Q ss_pred hhhcCcCeecccc--cCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 79 WSMVPQDVKAKAS--KDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 79 ~~~~~~~~~i~~~--~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
|+++++.....+. +.+..+||..+.+++||||+|+|+ +||+|+|.+||++|+|+||+|||+|+++
T Consensus 79 ~~l~~~l~~~g~i~~~~~~~vid~~~~g~~KVLG~G~l~--~pl~Vka~~fS~~A~ekIe~aGG~v~l~ 145 (148)
T PRK06419 79 DELADLLKAEGKAEEEDGKIVVDLTELGYDKVLGGGKVT--RPLVIKADAFSEKAIEKIEAAGGEVVLS 145 (148)
T ss_pred HHhHHHHHHCCcccccCCcceeeeccCCceEEeCCCccC--cCEEEEEeccCHHHHHHHHHcCCEEEEe
Confidence 9987533222222 256789999888999999999999 9999999999999999999999999976
No 3
>KOG1742 consensus 60s ribosomal protein L15/L27 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-39 Score=234.52 Aligned_cols=144 Identities=68% Similarity=1.157 Sum_probs=135.5
Q ss_pred CCCcccccccccCccccCCCCCCCCCCCCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhhhh
Q 032139 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWS 80 (146)
Q Consensus 1 m~~r~kk~rk~RG~~s~G~G~~gq~r~~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L~~ 80 (146)
|+++.+|+||+||+.|+|+|++|+||+|+||+|+||| |+++.|++|+|.||+|.|++.|+...+...+.+||||.||.
T Consensus 1 M~s~~rKTrKLrGHVShGhgrigKhrkhpgGrg~agg--hhr~~fdKyhpgyfgkvgmr~yh~~rn~~~~P~vnldkLWt 78 (147)
T KOG1742|consen 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGH--HHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWT 78 (147)
T ss_pred CcchhhHHHHhhcccccccccccccccCCCCccccCC--cccccccccCCCcccccchhHHHHhhccCcCCcccHHHHHH
Confidence 8999999999999999999999999999999999999 89999999999999999999999878889999999999999
Q ss_pred hcCcCeecccc---cCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139 81 MVPQDVKAKAS---KDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146 (146)
Q Consensus 81 ~~~~~~~i~~~---~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~ 146 (146)
++.++..++.+ +..+.+||..+.||.||||.|.|..++|++|+|..||+.|+|+|.++||.+++++
T Consensus 79 lv~~~~~~~~~~~k~g~aPvidv~~~Gy~kvlGkgklp~~~PvIVKak~~s~~AeekIk~~gg~~~~~~ 147 (147)
T KOG1742|consen 79 LVREQTRVKAAKNKTGAAPVIDVVQSGYYKVLGKGKLPEETPVIVKAKYFSRRAEEKIKKAGGAVVLTA 147 (147)
T ss_pred hhhHHHHHHHhccCCCCCceeeeeecceeEeeccccCCCCCcEEEeccccCccchHHHHhcCceeeecC
Confidence 99988777665 2888999999999999999999987899999999999999999999999998753
No 4
>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle.
Probab=100.00 E-value=2.1e-35 Score=220.00 Aligned_cols=126 Identities=31% Similarity=0.433 Sum_probs=106.5
Q ss_pred cccccccccCcc-----ccCCCCCCCCCCCCC--cCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEech
Q 032139 4 RFKKNRKKRGHV-----SAGHGRIGKHRKHPG--GRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNID 76 (146)
Q Consensus 4 r~kk~rk~RG~~-----s~G~G~~gq~r~~~G--grG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~ 76 (146)
+++++|++||++ |||+|++||.+++.+ -.||||||+|++.+ +||+||++++ ++.+|.+|||+
T Consensus 12 ~~~~kR~GRG~gsg~Gkt~GrG~kGqk~R~g~~~~~gfEGGQ~Pl~rr--------lPK~GF~~~~---~~~~~~~VNL~ 80 (145)
T TIGR01071 12 KKRRKRVGRGIGSGLGKTSGRGHKGQKARSGGKVRRGFEGGQMPLYRR--------LPKRGFSNKR---FKKEYAEVNLG 80 (145)
T ss_pred cCCCcceeCCCCCCCCCcCCCCCCcCcCCCCCCCCCeecCCCCceEEE--------CCCCCCCCcc---cCcceeEEEHH
Confidence 456778999975 599999999887532 34999999443333 7899999842 56889999999
Q ss_pred hhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEE
Q 032139 77 KLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVV 143 (146)
Q Consensus 77 ~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~ 143 (146)
+|+++++++.+||+++ .++++|+.. .++|||||+|+++ +||+|+|++||++|+|+||+|||+|+
T Consensus 81 ~L~~~~~~g~~i~~~~L~~~gli~~~-~~~vKvLg~G~l~--~~l~I~a~~~S~sA~ekIE~aGG~v~ 145 (145)
T TIGR01071 81 KLAKLFPNGEVVTLETLKEKGLITKK-IKFVKVLGNGKLT--KPLTVKAHRVSKSAKAAIEAAGGSVE 145 (145)
T ss_pred HHhhhhhcCCEecHHHHhhCccCcCC-CCceEEeCCCCcC--cCEEEEEEEECHHHHHHHHHcCCEEC
Confidence 9999888888899987 889999854 6789999999999 99999999999999999999999984
No 5
>PRK05592 rplO 50S ribosomal protein L15; Reviewed
Probab=100.00 E-value=1.9e-34 Score=215.10 Aligned_cols=126 Identities=28% Similarity=0.350 Sum_probs=106.7
Q ss_pred cccccccccCcc-----ccCCCCCCCCCCCCC--cCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEech
Q 032139 4 RFKKNRKKRGHV-----SAGHGRIGKHRKHPG--GRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNID 76 (146)
Q Consensus 4 r~kk~rk~RG~~-----s~G~G~~gq~r~~~G--grG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~ 76 (146)
+++++|++||++ |||+|++||.+++.+ -.||||||+|++.+ +||+||++ .++..|.+|||+
T Consensus 13 ~~~~kRvGRG~gsG~GkT~GrG~KGqksR~g~~~~~gFEGGQ~Pl~rr--------lPk~Gf~~----~~~~~y~~VNL~ 80 (146)
T PRK05592 13 RKARKRVGRGIGSGLGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRR--------LPKRGFTN----IFRKEYAVVNLG 80 (146)
T ss_pred cCCCccEecCCCCCCCCcCCCCCCcccCCCCCCCCCccccCCCceEEE--------cccCCcCC----CCcceEEEEeHH
Confidence 456788999976 599999999888643 34999999444333 78999987 467899999999
Q ss_pred hhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 77 KLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 77 ~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
+|++ ++++.+||+++ .+.++|... ..+|||||+|+|+ ++|+|+|++||++|+|+||+|||+|+++
T Consensus 81 ~L~~-~~~~~~I~~~~L~~~gli~~~-~~~vKvLg~G~l~--~~i~I~a~~~S~sA~e~IE~aGG~v~~~ 146 (146)
T PRK05592 81 DLNK-FEEGTEVTLEALKAAGLIRKN-IKGVKVLGNGELT--KKLTVKAHKFSKSAKEAIEAAGGKVEEI 146 (146)
T ss_pred Hhhc-cCCCCeECHHHHHHCCcccCC-CcceEEEecCccc--cCEEEEEEccCHHHHHHHHHcCCEEEeC
Confidence 9987 56667899998 999999876 3479999999999 9999999999999999999999999864
No 6
>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....
Probab=99.97 E-value=1.5e-32 Score=200.52 Aligned_cols=124 Identities=38% Similarity=0.552 Sum_probs=99.2
Q ss_pred CCCCCCCC--CCCcCCcCCCCCceeeeecccCCCC--CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCC
Q 032139 20 GRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGF--FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV 95 (146)
Q Consensus 20 G~~gq~r~--~~GgrG~aGg~~h~~~~~~~~~p~~--~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~ 95 (146)
|++|++|+ ++|++++||+++|++.++.+|||+| |||+||++++...++.+|.+|||++|++++++....+.+....
T Consensus 1 G~~gkt~grG~kG~~~rsG~~~~~~~feggq~pl~rr~pK~Gf~~~~~~~~~~~~~~vnL~~L~~~i~~~~~~~~~~~~~ 80 (129)
T PF00828_consen 1 GRKGKTRGRGHKGGRGRSGGHKHRPGFEGGQMPLYRRLPKRGFNNPHLRKNRREYPPVNLSKLQELIEKLKIDGTEIDGK 80 (129)
T ss_dssp SSSSSSSSSSSSSSSSSTTTSSTSSHHHHHHSHHHHHSSSSSHHHCCHCSGTCCCEEEEHHHHHHHTTTSSSSSCECTTS
T ss_pred CCCCccCcccCCCCCCCCCCCCCCchhcccccccccccCcccccccccccCcceeEeeeHHHHHHHHHhccccccccCCc
Confidence 44555555 6888999999999999999999999 9999999976544567899999999999988653332111222
Q ss_pred CeeecCC-CCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 96 PMIDVTQ-FGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 96 ~li~~~~-~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
.+++... .+++||||+|+++ +||+|+|++||++|+|+||+|||+|+++
T Consensus 81 ~~~~~~~~~~~~KvLg~G~l~--~~l~I~a~~~S~~A~ekIe~aGG~v~~~ 129 (129)
T PF00828_consen 81 ILVDAGLIKGYVKVLGKGELT--KPLTIKAHRFSKSAKEKIEAAGGEVVTF 129 (129)
T ss_dssp EEEECCEESSEEEEESSSSSS--SSEEEEESEETHHHHHHHHHTSEEEEEH
T ss_pred eeeeccccccceeeeccCCcc--cceEEEEEecCHHHHHHHHHcCCEEEeC
Confidence 3333322 3689999999999 9999999999999999999999999874
No 7
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.7e-30 Score=192.63 Aligned_cols=129 Identities=31% Similarity=0.414 Sum_probs=108.7
Q ss_pred ccC-ccccCCCCCCCCCC--CCCcCCcCCCC---Cceeee--eccc-CCCC--CccCCcCCCCCCCCCe-eeeEEechhh
Q 032139 11 KRG-HVSAGHGRIGKHRK--HPGGRGNAGGM---HHHRIL--FDKY-HPGF--FGKVGMRYFHKLRNKF-HCPIVNIDKL 78 (146)
Q Consensus 11 ~RG-~~s~G~G~~gq~r~--~~GgrG~aGg~---~h~~~~--~~~~-~p~~--~~K~GF~~f~~~~~~~-~~~~INL~~L 78 (146)
.|| +++++|+..|++|+ +.+|||.+|+. .|.|+| |++. ||+| |||+||++. .+.. +|.+|||++|
T Consensus 9 ~~G~~~~~~rvgrG~~sG~Gkt~GRG~kGqkaRsg~~~~~~gfeGgq~Pl~rrlpK~GF~~~---~~~~~~~~~vn~~~l 85 (152)
T COG0200 9 ARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRLPKRGFTNS---KFKKVEYAVVNLGKL 85 (152)
T ss_pred CCCCccccCCcccCCCCCCCCCCCCCCCCCccccCCceecceeecCCcchhhhcCCCCCccc---cccccceeEEEHHHh
Confidence 788 78899999999985 78999999985 345555 5555 7886 999999972 3444 8999999999
Q ss_pred hhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEe-ccCHHHHHHHHHcCCEEEEc
Q 032139 79 WSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAK-LVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 79 ~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~-~~S~~A~ekIe~aGG~v~~~ 145 (146)
+++++++.++++++ .+.++|..... .+||||+|+|+ +++.|++. .||++|+|+||+|||+|+++
T Consensus 86 ~~~~~~~~~v~~~~l~~~~~i~~~~~-~vKvLg~G~l~--~~~~~~v~a~~S~~A~ekIe~aGG~v~~~ 151 (152)
T COG0200 86 AELLPEGEEVTLASLKAAGVIRKLKD-LVKVLGNGKLT--KAVPVKVKAKASKSAIEKIEAAGGKVELI 151 (152)
T ss_pred hhhccccccccHHHHhhCCeEecccc-ccEEeccCeec--cceeEEEEeeeCHHHHHHHHHcCCEEEec
Confidence 99999999999997 88888877744 59999999999 77777777 99999999999999999986
No 8
>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.2e-22 Score=158.86 Aligned_cols=128 Identities=20% Similarity=0.298 Sum_probs=101.2
Q ss_pred ccccccccCcc-----ccCCCCCCCCCCC-CCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhh
Q 032139 5 FKKNRKKRGHV-----SAGHGRIGKHRKH-PGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKL 78 (146)
Q Consensus 5 ~kk~rk~RG~~-----s~G~G~~gq~r~~-~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L 78 (146)
++++|++||.. |||+|++||..+. +.-.||+|||++.+.+ |||+||.+ .++..|.+++|.+|
T Consensus 34 kk~kR~GRg~~sG~Gkt~GrG~KGqkqR~~~~~lGfEgGqtP~yrr--------~Pk~~~~~----~~~r~~~pl~L~rl 101 (274)
T KOG0846|consen 34 KKKKRKGRGISSGLGKTSGRGHKGQKQRGGRKILGFEGGQTPLYRR--------FPKFGFGN----GGRRQYLPLSLGRL 101 (274)
T ss_pred ccccccCCCcCCCCccccCCCCcchhhccCCCccccccCCchhHHh--------cccccccc----cccccCCcccHHHH
Confidence 45788999964 5999999997664 3333999999664443 67888886 56889999999999
Q ss_pred hhhcCcCe-----eccccc-CCCCeeecC--CCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 79 WSMVPQDV-----KAKASK-DNVPMIDVT--QFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 79 ~~~~~~~~-----~i~~~~-~~~~li~~~--~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
+.+|+.+. .||+++ .+.++|... +.| |.|.++|.-+|+-+|+|+|.+||..|+++||+|||+|+..
T Consensus 102 q~lID~grid~~q~Idm~tL~~~g~i~p~~~eyG-v~L~~~G~d~~~~~i~iEvs~aS~~AiaaIEkaGG~vtt~ 175 (274)
T KOG0846|consen 102 QKLIDTGRIDPSQPIDMKTLKDSGLINPKGREYG-VQLTADGADEFKAKINIEVSRASVQAIAAIEKAGGSVTTA 175 (274)
T ss_pred HHHHHhcCCCccCceeHHHHHhccCCCccccccC-ceeeccCCccccceEEEEehhhhHHHHHHHHhcCCeEEEE
Confidence 99988662 356666 777765543 333 8999888777779999999999999999999999999863
No 9
>PRK04005 50S ribosomal protein L18e; Provisional
Probab=99.57 E-value=5e-15 Score=105.78 Aligned_cols=63 Identities=33% Similarity=0.323 Sum_probs=53.0
Q ss_pred CeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 67 KFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 67 ~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
+.+|.+|||++|+.+.+++.++ . .++||||+|+++ +|++|+++.||++|+++||+|||+|+++
T Consensus 32 r~~y~vVNL~~L~~~~~~~~vv----------~----~~~KVLg~G~l~--k~l~V~a~~~Sk~A~ekIe~aGG~v~~~ 94 (111)
T PRK04005 32 RRRRAEVNLSKINRYAKEGDTV----------V----VPGKVLGSGKLD--HKVTVAALSFSETAKEKIEEAGGKALTI 94 (111)
T ss_pred CCccceEEHHHHHhhccCCCEE----------E----EeeEEEcCceEc--CCEEEEEeecCHHHHHHHHHcCCEEEEH
Confidence 4689999999998754343222 1 269999999999 9999999999999999999999999864
No 10
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.3e-11 Score=87.47 Aligned_cols=63 Identities=35% Similarity=0.382 Sum_probs=53.0
Q ss_pred CeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 67 KFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 67 ~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
+..+++|||++|+.+..+++ .-+| +-||||+|.++ ++++|-|..||++|.++|+.|||+|..+
T Consensus 43 rr~ra~VnlsKI~r~ak~~d--------~vvV------pGkVLg~g~l~--~kVtVaAl~FS~~A~~KI~~aGGe~~tl 105 (122)
T COG1727 43 RRNRAEVNVSKINRYAKEGD--------TVVV------PGKVLGDGKLD--KKVTVAALRFSKTAREKIEEAGGECLTL 105 (122)
T ss_pred cccCCceeHHHHHhhcCCCC--------EEEE------eeeEecCcccc--cceEEEEEecCHHHHHHHHHcCCeEeeH
Confidence 34568999999999876552 2233 45999999999 9999999999999999999999999865
No 11
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=98.79 E-value=7.9e-09 Score=80.10 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=53.3
Q ss_pred eeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCC--ceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 68 FHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQ--PVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 68 ~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~--~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
....+|||++|..+..++.....+..+..++ .. +-+||++|.|. . +|+|-|..||++|+++|++|||+|..+
T Consensus 57 ~nRppVsLSrI~r~~k~~d~~~~~~~~~k~~-VV---vGkVtdd~rl~--~vPkvtVaALrfS~tAr~rI~kAGGe~lT~ 130 (198)
T PTZ00195 57 SNRAPISLSRIAVVMKRKAVFTAKGKKAPIA-VV---VGDVLDDVRMA--RIPAMRVCALRFSKSARQSIVAAGGECLTF 130 (198)
T ss_pred ccCCceeHHHHHHHHhccccccccCCCCcEE-EE---EeeEcCCcccc--ccCceEEEEEecCHHHHHHHHHhCCEEEeH
Confidence 4567999999999876542111112222222 11 34999999998 6 999999999999999999999999865
No 12
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Probab=98.77 E-value=1e-08 Score=79.02 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=51.2
Q ss_pred eeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 68 FHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 68 ~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
....+|||++|..+.. +. +.+.-+| +-|||++|.|..-.+|+|-|..||++|+++||+|||+|..+
T Consensus 57 rnr~pVnLSkI~r~~~-~k-----e~~~~VV------vGkVl~dgrl~~vpkvtVaAL~fS~~Ar~kI~~AGGe~lT~ 122 (187)
T PTZ00469 57 RFRPPLSLSKLHRHMA-SY-----PDDVAVV------VGSITDDKRLYDCKKLKVCALRFTETARKRILDAGGECLTF 122 (187)
T ss_pred ccCCceeHHHHHHHhc-cC-----CCCEEEE------EeeEccCccccccCceEEEEEecCHHHHHHHHHhCCEEEeH
Confidence 4567999999998772 11 1122222 34999999986447999999999999999999999999865
No 13
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=1.2e-05 Score=60.52 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=34.3
Q ss_pred cccccccCccc-----cCCCCCCCCCCCCCc---CCcCCCCCceeeeeccc
Q 032139 6 KKNRKKRGHVS-----AGHGRIGKHRKHPGG---RGNAGGMHHHRILFDKY 48 (146)
Q Consensus 6 kk~rk~RG~~s-----~G~G~~gq~r~~~Gg---rG~aGg~~h~~~~~~~~ 48 (146)
.+.|.+||++| +|+|+.||++++.+. .+|+|||.|+|.+|++.
T Consensus 15 ~~~rvgrG~~sG~Gkt~GRG~kGqkaRsg~~~~~~gfeGgq~Pl~rrlpK~ 65 (152)
T COG0200 15 TRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRLPKR 65 (152)
T ss_pred ccCCcccCCCCCCCCCCCCCCCCCccccCCceecceeecCCcchhhhcCCC
Confidence 44556688654 899999998876544 48999999999999887
No 14
>KOG1714 consensus 60s ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=94.13 E-value=0.04 Score=42.44 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=30.1
Q ss_pred EEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 107 KVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 107 KvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
+|+.+-++---.++.|.|..||++|.+.|++|||+|.++
T Consensus 85 TvtdD~rv~~vPkl~v~al~~t~~ar~rI~kagg~i~Tl 123 (188)
T KOG1714|consen 85 TVTDDLRVQEVPKLKVAALRFTKGARARILKAGGEILTL 123 (188)
T ss_pred eecccceeeecccceeeeeecccchhhhhhccCceEEee
Confidence 344444332125899999999999999999999999865
No 15
>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....
Probab=91.90 E-value=0.026 Score=40.80 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=26.5
Q ss_pred cccCCCCCCCCCCCC---CcCCcCCCCCceeeeeccc
Q 032139 15 VSAGHGRIGKHRKHP---GGRGNAGGMHHHRILFDKY 48 (146)
Q Consensus 15 ~s~G~G~~gq~r~~~---GgrG~aGg~~h~~~~~~~~ 48 (146)
.|||+|+.||+.++. --++++|+|+|.|.+|.+.
T Consensus 5 kt~grG~kG~~~rsG~~~~~~~feggq~pl~rr~pK~ 41 (129)
T PF00828_consen 5 KTRGRGHKGGRGRSGGHKHRPGFEGGQMPLYRRLPKR 41 (129)
T ss_dssp SSSSSSSSSSSSSTTTSSTSSHHHHHHSHHHHHSSSS
T ss_pred ccCcccCCCCCCCCCCCCCCchhcccccccccccCcc
Confidence 468999999876632 2358999999999888775
No 16
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=44.64 E-value=24 Score=21.62 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=21.8
Q ss_pred CCCCCCCceEEEEeccCHHHHHHHHHcCCE
Q 032139 112 GVLPENQPVVVKAKLVSKTAEKKIKEAGGA 141 (146)
Q Consensus 112 G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~ 141 (146)
|++. +|=++.+.. ..+..++|+.|||-
T Consensus 6 G~V~--~PG~~~~~~-g~tl~~~i~~AGG~ 32 (59)
T PF10531_consen 6 GEVN--RPGTYELPP-GTTLSDAIAQAGGL 32 (59)
T ss_dssp CSBS--S-EEEEEET-T-BHHHHHHCTTSB
T ss_pred EEeC--CCEEEEECC-CCcHHHHHHHhCCC
Confidence 5688 899998887 88899999999983
No 17
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=35.65 E-value=40 Score=22.76 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.1
Q ss_pred CHHHHHHHHHcCCEEEE
Q 032139 128 SKTAEKKIKEAGGAVVL 144 (146)
Q Consensus 128 S~~A~ekIe~aGG~v~~ 144 (146)
-+.|++.||++||+++.
T Consensus 22 ~~a~~~~~e~~Gg~l~~ 38 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKS 38 (91)
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 35688999999999874
No 18
>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the C-terminal domain of the large subunit ribosomal proteins, known as the L7/L12 family. L7/L12 is present in each 50S subunit in four copies organised as two dimers. The L8 protein complex consisting of two dimers of L7/L12 and L10 in Escherichia coli ribosomes is assembled on the conserved region of 23 S rRNA termed the GTPase-associated domain []. The L7/L12 dimer probably interacts with EF-Tu. L7 and L12 only differ in a single post translational modification of the addition of an acetyl group to the N terminus of L7.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1DD4_B 1DD3_A 1RQU_B 2GYA_5 2GYC_5 1RQS_A 1RQV_A 1CTF_A 2XUX_L.
Probab=25.78 E-value=63 Score=20.80 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCCEEEE
Q 032139 129 KTAEKKIKEAGGAVVL 144 (146)
Q Consensus 129 ~~A~ekIe~aGG~v~~ 144 (146)
..+++++|+||++|++
T Consensus 52 e~ik~~Le~aGa~v~l 67 (68)
T PF00542_consen 52 EEIKKKLEAAGAKVEL 67 (68)
T ss_dssp HHHHHHHHCCT-EEEE
T ss_pred HHHHHHHHHcCCEEEe
Confidence 3678889999999875
No 19
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=25.48 E-value=1.5e+02 Score=25.32 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=39.1
Q ss_pred eEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCE
Q 032139 71 PIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGA 141 (146)
Q Consensus 71 ~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~ 141 (146)
..|||.+|-+.=+....+-+...|...|...+...|.|+ |++. +|=.+....=.-+..++|-.|||-
T Consensus 222 ~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~~~~~v~V~--GeV~--~Pg~~~~~~~~~TL~~Al~~AGGl 288 (379)
T PRK15078 222 ERISLQALMQNGDLSQNRLLYPGDILYVPRNDDLKVFVM--GEVK--KQSTLKMDRSGMTLTEALGNAEGI 288 (379)
T ss_pred EEEEHHHHHhcCCcccCceeCCCCEEEECCCCCcEEEEe--eecc--cceEEecCCCCCCHHHHHHhcCCC
Confidence 378888764311100112222356555544333346666 7888 777776654456789999999983
No 20
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.76 E-value=74 Score=25.54 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=24.0
Q ss_pred ceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEE
Q 032139 105 YFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVV 143 (146)
Q Consensus 105 ~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~ 143 (146)
.|+.|| .+. -||.|.-...|.-+++ +|+.|++..
T Consensus 124 lV~~LG--~fp--lPVEVip~a~~~v~r~-l~~~g~~~~ 157 (227)
T COG0120 124 LVEVLG--KFP--LPVEVIPFARSAVLRK-LEKLGGKPT 157 (227)
T ss_pred chhhcC--CCC--cCEEEchhHHHHHHHH-HHHhCCCcc
Confidence 478887 444 6666666666666666 888999864
No 21
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.70 E-value=60 Score=22.97 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=16.1
Q ss_pred ceeeeecccCCCCCccCCcCC
Q 032139 40 HHRILFDKYHPGFFGKVGMRY 60 (146)
Q Consensus 40 h~~~~~~~~~p~~~~K~GF~~ 60 (146)
|.-.-|+|+.| -+|+.||.+
T Consensus 15 n~VvLFMKGtp-~~P~CGFS~ 34 (105)
T COG0278 15 NPVVLFMKGTP-EFPQCGFSA 34 (105)
T ss_pred CceEEEecCCC-CCCCCCccH
Confidence 44577999888 689999985
Done!