Query 032139
Match_columns 146
No_of_seqs 223 out of 1296
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o58_Y 60S ribosomal protein L 100.0 2E-53 6.9E-58 316.0 8.5 144 1-146 1-149 (149)
2 4a17_K L29, RPL27A, 60S riboso 100.0 1.1E-53 3.9E-58 318.2 5.7 144 1-146 1-149 (149)
3 2zkr_l 60S ribosomal protein L 100.0 6.4E-53 2.2E-57 314.2 8.1 143 1-146 1-148 (148)
4 3j21_L 50S ribosomal protein L 100.0 5.8E-51 2E-55 303.0 10.6 140 1-145 1-147 (147)
5 3iz5_O 60S ribosomal protein L 100.0 1.5E-52 5E-57 309.9 -1.4 143 1-146 1-144 (144)
6 1vq8_L 50S ribosomal protein L 100.0 1E-38 3.5E-43 241.2 9.9 129 5-146 2-145 (165)
7 3r8s_L 50S ribosomal protein L 100.0 2E-35 6.7E-40 218.4 7.1 122 4-144 12-143 (143)
8 2zjr_I 50S ribosomal protein L 100.0 1E-35 3.6E-40 222.9 5.3 122 4-145 13-143 (156)
9 3v2d_P 50S ribosomal protein L 100.0 2E-33 7E-38 208.8 9.7 124 4-145 13-148 (150)
10 3bbo_N Ribosomal protein L15; 100.0 2.3E-34 7.8E-39 229.5 1.6 129 4-145 77-220 (257)
11 3j21_P 50S ribosomal protein L 99.8 2E-21 6.9E-26 139.7 3.2 75 49-145 27-103 (120)
12 1vq8_O 50S ribosomal protein L 99.7 5.1E-19 1.8E-23 126.4 3.9 74 49-145 24-99 (116)
13 2zkr_o 60S ribosomal protein L 99.6 4.3E-17 1.5E-21 124.7 2.8 74 53-145 47-123 (188)
14 3jyw_O 60S ribosomal protein L 99.6 6.3E-17 2.2E-21 116.2 -2.2 77 53-145 28-104 (121)
15 3iz5_R 60S ribosomal protein L 99.5 2.6E-14 8.9E-19 109.1 5.0 76 53-145 48-123 (188)
16 3izc_R 60S ribosomal protein R 99.5 1.7E-14 5.8E-19 109.9 3.1 77 53-145 48-124 (186)
17 4a17_N RPL18, 60S ribosomal pr 99.4 2.2E-14 7.4E-19 109.0 2.5 76 53-145 49-124 (181)
18 1vq8_L 50S ribosomal protein L 81.3 0.39 1.3E-05 35.4 0.7 28 1-28 1-34 (165)
19 2zjr_I 50S ribosomal protein L 68.9 4.3 0.00015 29.5 3.4 32 7-40 13-46 (156)
20 3bbo_N Ribosomal protein L15; 68.1 3.5 0.00012 32.5 3.0 32 7-39 77-110 (257)
21 2zkr_l 60S ribosomal protein L 62.8 4.3 0.00015 29.1 2.4 34 17-55 10-47 (148)
22 2cok_A Poly [ADP-ribose] polym 31.6 31 0.001 23.5 2.5 15 129-143 27-41 (113)
23 1ctf_A Ribosomal protein L7/L1 27.2 47 0.0016 21.1 2.7 16 129-144 58-73 (74)
24 3kz5_E Protein SOPB; partition 25.2 73 0.0025 18.8 3.0 20 119-138 22-43 (52)
25 2k6g_A Replication factor C su 24.1 50 0.0017 22.1 2.5 16 128-143 49-64 (109)
26 2jo4_A KIA7; peptide, oligomer 23.8 21 0.00071 17.8 0.4 17 127-143 7-23 (26)
27 2jo5_A KIA7F; peptide, oligome 23.7 21 0.00072 17.8 0.4 16 127-142 7-22 (26)
28 1l7b_A DNA ligase; BRCT, autos 23.6 53 0.0018 21.2 2.5 15 129-143 24-38 (92)
29 2ebu_A Replication factor C su 20.3 60 0.002 21.9 2.3 15 129-143 40-54 (112)
No 1
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=100.00 E-value=2e-53 Score=316.02 Aligned_cols=144 Identities=63% Similarity=1.099 Sum_probs=135.6
Q ss_pred CCCcccccccccCccccCCCCCCCCCCCCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhhhh
Q 032139 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWS 80 (146)
Q Consensus 1 m~~r~kk~rk~RG~~s~G~G~~gq~r~~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L~~ 80 (146)
||+|.+|+||+|||+|||||+++|||+|+||+|+||+++|+|+||++|+|.||+|+||++|+..++..++.+|||++||+
T Consensus 1 M~~r~kKtrK~RG~~s~G~G~~gkhR~h~GGrG~AGg~~Hh~~~~~Ky~p~~fGK~G~r~~h~~~n~~~~~~INldkL~~ 80 (149)
T 3o58_Y 1 MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWT 80 (149)
T ss_dssp CCCSSGGGSSSSSCSSSBTTBSCCSSCSSSSSSSCCCSSSSCCCSCCCTTSSSSCCSCCCCCCCCCCCCCCSTTTTHHHH
T ss_pred CCccccccccccCCCccCCCCCCCCCCCCCCCccccCccceeEEEeeeCCCccCCCCcccCcccccccccceEEHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998766777888999999999
Q ss_pred hcCcCeecccc----cCCCCeeecCCCCceEEecCCCC-CCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139 81 MVPQDVKAKAS----KDNVPMIDVTQFGYFKVLGKGVL-PENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146 (146)
Q Consensus 81 ~~~~~~~i~~~----~~~~~li~~~~~g~vKvLG~G~l-~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~ 146 (146)
+++++...+++ +.++++||..+.+|+||||+|+| + +||+|+|..||++|+|+||+|||+|+++|
T Consensus 81 lv~~~~~~~~a~~~~~~~~~vID~~~~g~vKVLG~G~l~~--~~v~Vka~~fS~~A~ekIe~aGG~~~~~~ 149 (149)
T 3o58_Y 81 LIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPN--VPVIVKARFVSKLAEEKIRAAGGVVELIA 149 (149)
T ss_dssp CSSCCSCSSCTTSSTTSSCCBCCCSSSCSCCCCCCCCCCS--CCEEECSSCCTTTTHHHHGGGSCEEECCC
T ss_pred HhHHHHhhhhhhhccCCCCcEEEEecccceEEEcCCccCC--CCEEEEEeecCHHHHHHHHHcCCEEEEcC
Confidence 99988777765 26789999999999999999999 7 99999999999999999999999999875
No 2
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=100.00 E-value=1.1e-53 Score=318.16 Aligned_cols=144 Identities=65% Similarity=1.123 Sum_probs=133.2
Q ss_pred CCCcccccccccCccccCCCCCCCCCC--CCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhh
Q 032139 1 MTTRFKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKL 78 (146)
Q Consensus 1 m~~r~kk~rk~RG~~s~G~G~~gq~r~--~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L 78 (146)
||+|.+|+||+|||+|||||++||||+ |+||+|+|||++|+|+||++|+|+||||+||++|+...++.+|++||||+|
T Consensus 1 m~~r~~K~rk~RG~~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky~p~~fGK~Gfr~~h~~~n~~~~~~VNLdkL 80 (149)
T 4a17_K 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRTFHLKKNPLHCPVVNIDKL 80 (149)
T ss_dssp -CGGGSHHHHHTTSSSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHHSTTCSSCCSCCCSSCCCGGGCCCEEEGGGH
T ss_pred CCccccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCcceEEeeeccCCCcCCCCCccCCCccCCcceeeEEEHHHH
Confidence 999999999999999999999999999 999999999999999999999999999999999876566788999999999
Q ss_pred hhhcCcCeeccccc--CCCCeeecCCCCceEEecCCCC-CCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139 79 WSMVPQDVKAKASK--DNVPMIDVTQFGYFKVLGKGVL-PENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146 (146)
Q Consensus 79 ~~~~~~~~~i~~~~--~~~~li~~~~~g~vKvLG~G~l-~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~ 146 (146)
|++++++.+++++. .++++||..+.+++||||+|+| + +||+|+|+.||++|+|+||+|||+|+++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~vId~~~~g~~KvLG~G~l~~--~~v~v~a~~fS~~A~~kIe~aGG~~~~~~ 149 (149)
T 4a17_K 81 WSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLPN--QPVVVKAKYFSKTAERRIVAVGGACVLTA 149 (149)
T ss_dssp HHHSCHHHHHHHHHCCSSCCEEEHHHHTCCEEECCSCCCS--SCCEEEESEECHHHHHHHHHTTCEEEECC
T ss_pred HHHhhhhcchhhhhhcCCceEEEeccCCeEEEecCCccCC--CCEEEEEeecCHHHHHHHHHcCCEEEEeC
Confidence 99999887677653 5788999776899999999999 7 99999999999999999999999999875
No 3
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.4e-53 Score=314.18 Aligned_cols=143 Identities=64% Similarity=1.126 Sum_probs=108.8
Q ss_pred CCCcccccccccCccccCCCCCCCCCCCCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeee-eEEechhhh
Q 032139 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHC-PIVNIDKLW 79 (146)
Q Consensus 1 m~~r~kk~rk~RG~~s~G~G~~gq~r~~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~-~~INL~~L~ 79 (146)
|++|++|+|++||++|||||++||||+++||+||||||+|+|+||++|+|+||||+||++++. ....+| .+|||++||
T Consensus 1 m~~r~~k~rk~RG~~t~G~G~~gq~r~~~Gg~G~aGgq~h~~~~~~k~~p~~lpK~GF~~~~~-~~~~~~~~~VNl~~L~ 79 (148)
T 2zkr_l 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMKHYHL-KRNQSFCPTVNLDKPW 79 (148)
T ss_dssp -----CHHHHTTTTSCSSCCSCSCC--CCSCSSSTTTTTTTCSSCTTTC-------------------CCCCEEETHHHH
T ss_pred CCCccCCcccCCCCcCcCCCCCCCCCCCCCCCCcccCCCCCEEeccccCCCcCCCCCcCCCCc-cccceecceEEHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998642 111244 899999999
Q ss_pred hhcCcCeeccccc---CCCCeeecCCCCceEEecCCCCCCCC-ceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139 80 SMVPQDVKAKASK---DNVPMIDVTQFGYFKVLGKGVLPENQ-PVVVKAKLVSKTAEKKIKEAGGAVVLTA 146 (146)
Q Consensus 80 ~~~~~~~~i~~~~---~~~~li~~~~~g~vKvLG~G~l~~~~-~l~Ika~~~S~~A~ekIe~aGG~v~~~~ 146 (146)
++++++.+++++. .++++|+..+.+++||||+|+|+ + ||+|+|++||++|+|+||+|||+|+++|
T Consensus 80 ~l~~~~~~~~~~~~l~~~~~vI~~~~~~~vKVLG~Gel~--k~~l~Vka~~fSk~A~ekIeaAGG~v~~~~ 148 (148)
T 2zkr_l 80 TLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLP--KQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148 (148)
T ss_dssp HHTTTTTSSCTTTTEEEHHHHSTTCSSSCCEEECCSCCC--SSCCEEEESEECHHHHHHHHHTTCEEEEC-
T ss_pred hhhhcCcEEehhhhccccCCeEeccccCceEEecCCccc--cCCEEEEEEecCHHHHHHHHHcCCEEEecC
Confidence 9988877777763 48889987667899999999999 8 9999999999999999999999999875
No 4
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.8e-51 Score=303.05 Aligned_cols=140 Identities=38% Similarity=0.490 Sum_probs=126.9
Q ss_pred CCCcccccccccCccccCCCCCCCCCC--CCCcCCcCCC---CCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEec
Q 032139 1 MTTRFKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGG---MHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNI 75 (146)
Q Consensus 1 m~~r~kk~rk~RG~~s~G~G~~gq~r~--~~GgrG~aGg---~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL 75 (146)
||+|++|+||+|||+|||||+++|||+ |+||+|+||+ ++|+|+||++|+|.||||+||++|+ .++.+|.+|||
T Consensus 1 m~~r~~k~rk~rG~~s~g~G~~~khR~~G~~GGrG~aG~g~~~~H~~~~~~ky~p~~~pK~GF~n~~--~~~~~~~~VNL 78 (147)
T 3j21_L 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRPP--EVQREVRVVNL 78 (147)
T ss_dssp CCCHHHHHTTTTCCSSTTSCSTTTSCSHHHHTSSTTTTSSCSSSSSSSCSSSSCSCCSCCCSCCCCT--TTCCCCCEEEH
T ss_pred CCccccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCccCcccEEEEeecCCCcCCcCCCCccc--cccceeEEEEH
Confidence 999999999999999999999999999 9999999999 9999999999999999999999864 24678999999
Q ss_pred hhhhhhcCcCeeccccc--CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 76 DKLWSMVPQDVKAKASK--DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 76 ~~L~~~~~~~~~i~~~~--~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
++||+++++..+..+.. .+..+||..+++ +||||+|+|+ +||+|+|+.||++|+|+||+|||+|+++
T Consensus 79 ~~L~~l~~~L~~~gli~~~~~~~vid~~~~G-vKVLG~G~l~--~~v~Vka~~fS~~A~ekIeaaGG~v~~~ 147 (147)
T 3j21_L 79 KFIDEHLDELMQMGIAYEEGGKIIVDVTQFA-DKVLGTGKLT--RPLVIKARAFSPKAEEKIKAAGGEAVLV 147 (147)
T ss_dssp HHHHHTTTTTTTSCCCSSSSBSEEEEGGGGC-CEEECCSCCS--SCEEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHcCcccccCCcceecccccC-cEEecCCccC--cCEEEEEEecCHHHHHHHHHcCCEEEeC
Confidence 99999988654444432 567788988788 9999999999 9999999999999999999999999874
No 5
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=100.00 E-value=1.5e-52 Score=309.85 Aligned_cols=143 Identities=80% Similarity=1.385 Sum_probs=132.2
Q ss_pred CCCcccccccccCccccCCCCCCCCCCCCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhhhh
Q 032139 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWS 80 (146)
Q Consensus 1 m~~r~kk~rk~RG~~s~G~G~~gq~r~~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L~~ 80 (146)
||+|.+|+||+|||+|||||+++|||+|+||+|+||+++|+|+||++|+|.||+|+||+.|+..++..++.+|||++||+
T Consensus 1 M~~r~kKtrK~RG~~s~G~G~~gkhR~h~GGrG~AGg~~Hh~~~~~Ky~p~~fGK~G~r~~h~~~n~~~~~~VNl~kL~~ 80 (144)
T 3iz5_O 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCPAVNVERLWS 80 (144)
T ss_dssp CCSSSSSSCCSSSCSTTTTSCCCSSCSCCSCCCSTTTSCCCEEEEETHHHHHTSTTCTTSCCCSSCTTSCEEEGGGTSTT
T ss_pred CCccccccccccCCCccCCCCCCCCCCCCCCCccccCccceeEEEEeeCCCccCCCCccCCCccccccccceEEHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998766777889999999999
Q ss_pred hcCcCeecccc-cCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139 81 MVPQDVKAKAS-KDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146 (146)
Q Consensus 81 ~~~~~~~i~~~-~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~ 146 (146)
+++++. .+ +.++.+||..+.+|+||||+|+|+|++||+|+|+.||++|+|+||+|||+|+++|
T Consensus 81 lv~~~~---a~~~~~~~vIDl~~~G~~KvLG~G~l~~~~~v~Vka~~fS~~A~ekIe~aGG~v~~~~ 144 (144)
T 3iz5_O 81 MVPAEA---GAGAGKAPVIDVTQFGYTKVLGKGMLPPERPIVVKAKLISKVAEKKIKAAGGAVLLTA 144 (144)
T ss_dssp CTTSSE---EEEECCSCCCSCCEEEESEECHHHHSTTCTTCCCEECGGGSSCSCCCSSCCCCCCCCC
T ss_pred HhHHhh---hccCCCceEEEeeccCcEEEeCCCccCCccCEEEEEeecCHHHHHHHHHcCCEEEEcC
Confidence 998775 23 3789999999899999999999922299999999999999999999999998765
No 6
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=100.00 E-value=1e-38 Score=241.23 Aligned_cols=129 Identities=26% Similarity=0.399 Sum_probs=111.0
Q ss_pred ccccccccCccccCCCCCCCCCC--CCCcCCcCCCCCceeeeecccCCCCCccCCcCCCCCCCCCeeeeEEechhhhhhc
Q 032139 5 FKKNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMV 82 (146)
Q Consensus 5 ~kk~rk~RG~~s~G~G~~gq~r~--~~GgrG~aGg~~h~~~~~~~~~p~~~~K~GF~~f~~~~~~~~~~~INL~~L~~~~ 82 (146)
.+|+++.||+++||+|+.|++|+ |+||++++|+++|+|++|.+ |||+||++|+ .++.+|.+|||++||+++
T Consensus 2 ~~k~~k~R~gRg~GsG~~GKt~grGhkGqk~raGg~~~~~~pl~k-----lPK~GF~~~~--~~r~~~~~VNL~~L~~l~ 74 (165)
T 1vq8_L 2 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEP-----LGKSGFKRPQ--KVQEEAATIDVREIDENV 74 (165)
T ss_dssp CCHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTTTTTTTTCTTSCC-----SCCCCCCCCG--GGCCCEEEEEHHHHHHTT
T ss_pred CccccCcCCccCCCCCCCCCCCCCCCCCcccccCCCcCCCceeeE-----CCCCCCccCC--cccceeeeEEHHHHHHHH
Confidence 46788999999999999999998 99999999999999887654 8999999864 234679999999999987
Q ss_pred C-----------cCe-eccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEcC
Q 032139 83 P-----------QDV-KAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 146 (146)
Q Consensus 83 ~-----------~~~-~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~~ 146 (146)
+ ++. +||+++ .++++|. ++|||||+|+|+ +||+|+|++||++|+|+||+|||+|++++
T Consensus 75 ~~~~~~g~~~~~~~~~vId~~~L~~~gli~----~~vKVLG~G~l~--k~l~Vka~~fSk~A~ekIeaAGG~v~~i~ 145 (165)
T 1vq8_L 75 TLLAADDVAEVEDGGFRVDVRDVVEEADDA----DYVKVLGAGQVR--HELTLIADDFSEGAREKVEGAGGSVELTD 145 (165)
T ss_dssp GGGTTSCCCC-----CEEEGGGTCTTCTTS----SEEEEECCSCCC--SCCEEEESEECHHHHHHHHHTTCEEEECT
T ss_pred HHhhhccccccCCCCeEECHHHHHHCCccC----CceEEecCCccC--CCEEEEEEecCHHHHHHHHHcCCEEEEee
Confidence 3 332 577776 7788872 689999999999 99999999999999999999999999863
No 7
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=100.00 E-value=2e-35 Score=218.40 Aligned_cols=122 Identities=26% Similarity=0.403 Sum_probs=103.3
Q ss_pred cccccccccCccc-----cCCCCCCCCCCCCCc--CCcCCCCCceeeeecccCCCC--CccCCcCCCCCCCCCeeeeEEe
Q 032139 4 RFKKNRKKRGHVS-----AGHGRIGKHRKHPGG--RGNAGGMHHHRILFDKYHPGF--FGKVGMRYFHKLRNKFHCPIVN 74 (146)
Q Consensus 4 r~kk~rk~RG~~s-----~G~G~~gq~r~~~Gg--rG~aGg~~h~~~~~~~~~p~~--~~K~GF~~f~~~~~~~~~~~IN 74 (146)
+++++|.+||++| ||+|++||.+++.+. .|||||| ||+| +||+||++ .++.+|.+||
T Consensus 12 ~k~~kRvGRG~gsG~Gkt~GrG~KGqkaRsG~~~~~gFEGGQ----------~Pl~rRlPK~GF~~----~~~~~y~~VN 77 (143)
T 3r8s_L 12 KKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQ----------MPLYRRLPKFGFTS----RKAAITAEIR 77 (143)
T ss_dssp SCCCCCCSSCSTTSSCSGGGSCSSSTTTSTTCCCCTTCCTTS----------CCHHHHSCCCCCCC----STGGGEEECC
T ss_pred CcCcccccCcCCCCCCCCCCCCCCCCcCCCCCCCCCccccCC----------CccEEEccccccCC----cccceeEEEE
Confidence 4556788999765 899999998875332 3999999 6664 88999997 4578999999
Q ss_pred chhhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEE
Q 032139 75 IDKLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 144 (146)
Q Consensus 75 L~~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~ 144 (146)
|++|+++ + +.+||+++ .++++|... ..+|||||+|+|+ +||+|+|++||++|+|+||+|||+|++
T Consensus 78 L~~L~~~-~-~~~I~~~~L~~~glv~~~-~~~VKVLg~Gel~--~~l~V~a~~~SksA~ekIEaAGG~v~~ 143 (143)
T 3r8s_L 78 LSDLAKV-E-GGVVDLNTLKAANIIGIQ-IEFAKVILAGEVT--TPVTVRGLRVTKGARAAIEAAGGKIEE 143 (143)
T ss_dssp SSSSSCS-S-SSEEEHHHHGGGTSSCTT-CCEEECCCCSCCC--SCCEEESSCCCHHHHHHHHTTTCEEEC
T ss_pred HHHhhhc-c-CCeecHHHHHHcCccccC-CCceEEeeCCccc--ccEEEEEEecCHHHHHHHHHcCCEEeC
Confidence 9999885 4 35899998 999999876 4579999999999 999999999999999999999999973
No 8
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=100.00 E-value=1e-35 Score=222.90 Aligned_cols=122 Identities=24% Similarity=0.323 Sum_probs=103.9
Q ss_pred cccccccccCcc----ccCCCCCCCCCCCCC--cCCcCCCCCceeeeecccCCCC--CccCCcCCCCCCCCCeeeeEEec
Q 032139 4 RFKKNRKKRGHV----SAGHGRIGKHRKHPG--GRGNAGGMHHHRILFDKYHPGF--FGKVGMRYFHKLRNKFHCPIVNI 75 (146)
Q Consensus 4 r~kk~rk~RG~~----s~G~G~~gq~r~~~G--grG~aGg~~h~~~~~~~~~p~~--~~K~GF~~f~~~~~~~~~~~INL 75 (146)
+++++|.+||++ |||+|++||++++.+ .+|||||| ||+| |||+||++ ++.+|.+|||
T Consensus 13 ~~~~kRvGRG~gg~Gkt~GrG~KGqk~RsG~~~~~gfEGGQ----------~Pl~rrlPK~GF~n-----~~~~~~~VNL 77 (156)
T 2zjr_I 13 RKDRKRVGRGPGGTDKTAGRGHKGQKSRSGAGKGAFFEGGR----------SRLIARLPKRGFNN-----VGTTYEVVKL 77 (156)
T ss_dssp TTCCCCSSSCCCCCCSCSSSCCCCSSSSSCCSCCCSCSCCS----------SSSTTTSCCCCCCC-----CCCCCCEECH
T ss_pred ccCCcccCCCCCCCCCcCCCCCCCCCCCCCCCCCCceEcCc----------CCCeEecCCCCCcC-----CceEEEeech
Confidence 455678889964 689999999888543 35999998 7886 99999996 3578999999
Q ss_pred hhhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 76 DKLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 76 ~~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
++||++++.+ ||+++ .++++|+.. .++|||||+|+|+ +||+|+|++||++|+|+||+|||+|+++
T Consensus 78 ~~L~~l~~~~--i~~~~L~~~gli~~~-~~~vKVLG~G~l~--~~l~Vka~~fSk~A~ekIEaAGG~v~~i 143 (156)
T 2zjr_I 78 SQLQDLEDTT--FDRDTLEAYRLVRRK-NRPVKLLASGEIS--RAVTVHVDAASAAAIKAVEAAGGRVVLP 143 (156)
T ss_dssp HHHTTSCCCC--CCTTTTHHHHHCCCC-SSCCEECCCCCCC--CCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred hHHHhhhcCC--cCHHHHHhCCcEecc-ccceEEeeCCccC--cCeEEEEEecCHHHHHHHHHcCCEEEEe
Confidence 9999876644 88887 888999876 4689999999999 9999999999999999999999999875
No 9
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=100.00 E-value=2e-33 Score=208.81 Aligned_cols=124 Identities=27% Similarity=0.323 Sum_probs=103.6
Q ss_pred cccccccccCccc-----cCCCCCCCCCCCCCc--C-CcCCCCCceeeeecccCCCC--CccCCcCCC-CCCCCCeeeeE
Q 032139 4 RFKKNRKKRGHVS-----AGHGRIGKHRKHPGG--R-GNAGGMHHHRILFDKYHPGF--FGKVGMRYF-HKLRNKFHCPI 72 (146)
Q Consensus 4 r~kk~rk~RG~~s-----~G~G~~gq~r~~~Gg--r-G~aGg~~h~~~~~~~~~p~~--~~K~GF~~f-~~~~~~~~~~~ 72 (146)
+++++|++||++| ||+|++||.+++.+. . |||||| ||+| +||+||++. +..+++.+|.+
T Consensus 13 ~k~~kRvGRG~gSG~GkT~GrG~KGqkaRsg~~~~~~gFEGGQ----------~Pl~rRlPK~GF~~~~~~~~~~~~y~~ 82 (150)
T 3v2d_P 13 NKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGR----------STTLMRLPKRGMQGQVPGEIKRPRYQG 82 (150)
T ss_dssp SCCCCCCSSCTTTSCCTTTTCCSSSTTTSTTCCSCTTTCCTTS----------CCTTTTSCCCSCCCCTTCCCCCCCEEE
T ss_pred CcCCccccCCCCCCCCccCCCCCCcCcCCCCCCCCCccccCCC----------CccEEEcCccCccCccccccccceEEE
Confidence 4556788999865 899999998886432 3 899999 6764 899999972 00135788999
Q ss_pred EechhhhhhcCcCeeccccc-CCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 73 VNIDKLWSMVPQDVKAKASK-DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 73 INL~~L~~~~~~~~~i~~~~-~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
|||++|++ |+ + +||+++ .++++|... + +|||||+|+|+ ||+|+|++||++|+|+||+|||+|+++
T Consensus 83 VNL~~L~~-~~-G-~I~~~~L~~~glv~~~-~-~VKvLg~G~l~---~v~V~a~~~S~~A~~kIe~aGG~v~~~ 148 (150)
T 3v2d_P 83 VNLKDLAR-FE-G-EVTPELLVRAGLLKKG-Y-RLKILGEGEAK---PLKVVAHAFSKSALEKLKAAGGEPVLL 148 (150)
T ss_dssp EEHHHHTT-CC-S-EECHHHHHTTTSSCTT-C-EEEEECSSCCC---SCEECBSCBCHHHHHHHHHTTCBCCBC
T ss_pred EEHHHHhh-cC-C-cccHHHHHHCCCcccc-c-ceEEEecCCcc---cEEEEEEEcCHHHHHHHHHcCCEEEEe
Confidence 99999998 77 6 899998 999999764 4 89999999988 999999999999999999999999876
No 10
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.98 E-value=2.3e-34 Score=229.55 Aligned_cols=129 Identities=23% Similarity=0.294 Sum_probs=109.2
Q ss_pred cccccccccCcc-----ccCCCCCCCCCCCC--CcCCcCCCCCceeeeecccCCCC--Ccc-CCcCCCCCCCCCeeeeEE
Q 032139 4 RFKKNRKKRGHV-----SAGHGRIGKHRKHP--GGRGNAGGMHHHRILFDKYHPGF--FGK-VGMRYFHKLRNKFHCPIV 73 (146)
Q Consensus 4 r~kk~rk~RG~~-----s~G~G~~gq~r~~~--GgrG~aGg~~h~~~~~~~~~p~~--~~K-~GF~~f~~~~~~~~~~~I 73 (146)
+++++|++||++ |||+|++||++++. ...||+||| ||+| ||| +||+++++ .++.+|.+|
T Consensus 77 ~k~kkRvGRG~GSG~GKT~GRGhKGQkaRsG~~~r~GFEGGQ----------mPl~rRlPK~rGF~n~~~-~~r~~y~~V 145 (257)
T 3bbo_N 77 RKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQ----------MPLYRRLPKLRGIAGGMH-AGLPKYVNV 145 (257)
T ss_dssp CSCCCCCSSCCCCSCSSSCSSSCCCCGGGTSSCSSTTCCSSC----------SSTTSCCCCCSSCCCCCS-SCCSSSSCS
T ss_pred ccCCcCCcCcCCCCCCCcCCCCCCCCcCcCCCCCCCceecCC----------CcchhhcccccccCCccc-cCcceeeeE
Confidence 456778999964 59999999988853 235999999 7775 899 89998543 245789999
Q ss_pred echhhhhh-cCcCeeccccc-CCCCeeecC---CCCceEEecCCCCCCCCceEEEEeccCHHHHHHHHHcCCEEEEc
Q 032139 74 NIDKLWSM-VPQDVKAKASK-DNVPMIDVT---QFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 74 NL~~L~~~-~~~~~~i~~~~-~~~~li~~~---~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ekIe~aGG~v~~~ 145 (146)
||++||++ ++++.+||+++ .++++|+.. ..++|||||+|+|+ +||+|+|+.||++|+|+||+|||+|+++
T Consensus 146 NL~kL~~lr~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLt--kkLtVkA~~fSksA~eKIEaAGG~v~~i 220 (257)
T 3bbo_N 146 NLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELS--KKLTIKAGAFSTSAKEKLEYAGCSLIVL 220 (257)
T ss_dssp CSSCCSCSSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCC--SSCCCCSSCCTGGGTTSSTTTTCCEECC
T ss_pred eHHHHhhcccCCCCEeCHHHHHhCCcccccccccCccEEEEeCCccC--CCeEEEEEecCHHHHHHHHHcCCEEEEe
Confidence 99999987 88888999987 899999763 24689999999999 9999999999999999999999999875
No 11
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.82 E-value=2e-21 Score=139.66 Aligned_cols=75 Identities=29% Similarity=0.231 Sum_probs=64.6
Q ss_pred CCCC--CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEec
Q 032139 49 HPGF--FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKL 126 (146)
Q Consensus 49 ~p~~--~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~ 126 (146)
+|.| +||+||++ +.+|.+|||++|+++++++.+|+ . ++||||+|+++ +||+|+|++
T Consensus 27 ~Pl~rrlpKrgF~~------r~~~~~VnL~~L~~~~~~g~~i~----------~----~vKVLg~G~l~--~kl~V~a~~ 84 (120)
T 3j21_P 27 VKIWKDVAWRLERP------RRQRAEVNVSKINRYANDGEMIV----------V----PGSVLGAGKLE--KKVIVAAWK 84 (120)
T ss_dssp CSHHHHHHHHHHSC------TTSSEEEEHHHHTTSSCTTCEEE----------E----EEEEECSSCCC--SCCEEEEEE
T ss_pred CcHHHHHHhhcCCC------CCcceeEEHHHHHHHHhcCCEEE----------E----EEEEcCCCeec--CCEEEEEec
Confidence 5664 89999986 46689999999999887654333 1 58999999999 999999999
Q ss_pred cCHHHHHHHHHcCCEEEEc
Q 032139 127 VSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 127 ~S~~A~ekIe~aGG~v~~~ 145 (146)
||++|+|+||+|||+|+++
T Consensus 85 fS~~A~ekIe~AGG~v~~~ 103 (120)
T 3j21_P 85 FSETARRKIIEAGGEAITI 103 (120)
T ss_dssp ECHHHHHHHTTTSSCEEES
T ss_pred cCHHHHHHHHHcCCEEEEe
Confidence 9999999999999999976
No 12
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=99.75 E-value=5.1e-19 Score=126.41 Aligned_cols=74 Identities=28% Similarity=0.281 Sum_probs=62.5
Q ss_pred CCCC--CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEec
Q 032139 49 HPGF--FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKL 126 (146)
Q Consensus 49 ~p~~--~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~ 126 (146)
||++ +||+| + .++.+|.+|||++|+++++++.+| +| ++||||+|+++ +||+|+|++
T Consensus 24 ~Pl~rRlPKrG--~----~~~~~~~~VnL~~L~~~~~~g~~i--------lv------~vKVLg~G~l~--k~l~V~a~~ 81 (116)
T 1vq8_O 24 GAVWGDVAERL--E----KPRRTHAEVNLGRIERYAQEDETV--------VV------PGKVLGSGVLQ--KDVTVAAVD 81 (116)
T ss_dssp CHHHHHHHHHH--T----SCTTTSEEEEHHHHHHHCCTTSEE--------EE------EEEEECCSCCC--SCCEEEEEE
T ss_pred CCHhhhcccCC--C----CCCceeeeEeHHHHHHHccCCCEE--------EE------EEEEeeCCeec--CCEEEEEEe
Confidence 6764 89999 3 235789999999999988765332 22 69999999999 999999999
Q ss_pred cCHHHHHHHHHcCCEEEEc
Q 032139 127 VSKTAEKKIKEAGGAVVLT 145 (146)
Q Consensus 127 ~S~~A~ekIe~aGG~v~~~ 145 (146)
||++|+|+||+| |+|+++
T Consensus 82 fSk~A~ekIeaA-G~v~~~ 99 (116)
T 1vq8_O 82 FSGTAETKIDQV-GEAVSL 99 (116)
T ss_dssp ECHHHHHHHHHH-SEEEEH
T ss_pred cCHHHHHHHHHc-CeEEEh
Confidence 999999999999 999864
No 13
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.64 E-value=4.3e-17 Score=124.65 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=59.3
Q ss_pred CccCCcCCCCCCCCCeeeeEEechhhhhhcC-cCeecccccCCCCeeecCCCCceEEecCCCCCCCC--ceEEEEeccCH
Q 032139 53 FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVP-QDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQ--PVVVKAKLVSK 129 (146)
Q Consensus 53 ~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~-~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~--~l~Ika~~~S~ 129 (146)
+||+||.+ +.+|.+|||++|+++.. ++. +..++ ...+||||+|+|+ + +|+|+|++||+
T Consensus 47 lpKRgF~s------r~~y~~VNLs~L~~~~~~~g~-------~~~ii----v~~~KVLg~GeL~--kvpkLtV~A~~fSk 107 (188)
T 2zkr_o 47 VLKRLFMS------RTNRPPLSLSRMIRKMKLPGR-------ENKTA----VVVGTVTDDVRIL--EVPKLKVCALRVSS 107 (188)
T ss_dssp HHHHHHSC------TTTSCEEEHHHHHSCSSSCCS-------TTSEE----EEEEEEECSSCCC--CCSSCCEEEEEECH
T ss_pred HHHhhCCC------ccceeeeeHHHHHHHhhhcCC-------CCcEE----EeecEEECCceec--ccCCeEEEEeecCH
Confidence 89999986 46789999999987541 111 11122 1247999999999 9 99999999999
Q ss_pred HHHHHHHHcCCEEEEc
Q 032139 130 TAEKKIKEAGGAVVLT 145 (146)
Q Consensus 130 ~A~ekIe~aGG~v~~~ 145 (146)
+|+|+||+|||+|+++
T Consensus 108 sArekIEaAGG~v~~i 123 (188)
T 2zkr_o 108 RARSRILKAGGKILTF 123 (188)
T ss_dssp HHHHHHHHHSSCEEEH
T ss_pred HHHHHHHHcCCEEEEh
Confidence 9999999999999865
No 14
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=99.57 E-value=6.3e-17 Score=116.22 Aligned_cols=77 Identities=19% Similarity=0.125 Sum_probs=59.2
Q ss_pred CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHH
Q 032139 53 FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAE 132 (146)
Q Consensus 53 ~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ 132 (146)
+||+||.+ +.+|.+|||++|+++++... .+...+ ..++||||+|+|+-.++++|+|++||++|+
T Consensus 28 vpKRgF~s------r~~~~~VnLs~L~~~~~~~g------~~g~~v----vv~~KVlg~G~l~~~~kl~V~a~~fS~~A~ 91 (121)
T 3jyw_O 28 VLKALFLS------KINRPPVSVSRIARALKQEG------AANKTV----VVVGTVTDDARIFEFPKTTVAALRFTAGAR 91 (121)
T ss_dssp HHHTTTSC------STTSCCBCHHHHHHHTTTTS------CSSSEE----EESSCBCCCSCCCSSSCCCEECSSBCTTTT
T ss_pred HHHHHCCC------CCccceEEHHHHHHHhhccC------CCCCEE----EEEEEEcCCceEcccCCEEEEEEecCHHHH
Confidence 78999986 36789999999999876200 001111 125799999999611389999999999999
Q ss_pred HHHHHcCCEEEEc
Q 032139 133 KKIKEAGGAVVLT 145 (146)
Q Consensus 133 ekIe~aGG~v~~~ 145 (146)
++||+|||+|+++
T Consensus 92 ~kIe~AGG~~~~~ 104 (121)
T 3jyw_O 92 AKIVKAGGECITL 104 (121)
T ss_dssp THHHHHTCCBCCS
T ss_pred HHHHHcCCEEEEH
Confidence 9999999999865
No 15
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=99.48 E-value=2.6e-14 Score=109.09 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=58.8
Q ss_pred CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHH
Q 032139 53 FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAE 132 (146)
Q Consensus 53 ~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ 132 (146)
.+|++|.+ +..+.+|||++|++++++. +.+..+| .++||||+|+|+-.++|+|.|++||++|+
T Consensus 48 V~KRLf~s------r~~r~pVnLsrL~r~~k~~------e~gk~VV-----v~gKVLg~G~L~~v~kl~V~A~~fS~sA~ 110 (188)
T 3iz5_R 48 ILKRLFMS------KTNRPPLSMRRLSNFMKGK------EEKNIAV-----VVGTITDDMRIQEVPAMKVTALRFTETAR 110 (188)
T ss_dssp HHHHHHSC------TTTCCEEEHHHHHTTSCSS------STTCEEE-----EEEEEECCCCSSCCSSEEEEEEECCHHHH
T ss_pred HHHHHcCC------ccccCcccHHHHHHHhccc------cCCCEEE-----EEEEEcCCceEcccCCEEEEEeecCHHHH
Confidence 67899985 3567899999999987631 0011112 16899999999512369999999999999
Q ss_pred HHHHHcCCEEEEc
Q 032139 133 KKIKEAGGAVVLT 145 (146)
Q Consensus 133 ekIe~aGG~v~~~ 145 (146)
++||+|||+|+++
T Consensus 111 ekIe~AGG~v~~~ 123 (188)
T 3iz5_R 111 ARIINAGGECLTF 123 (188)
T ss_dssp HHHHTTSEEEEEH
T ss_pred HHHHHcCCEEEEH
Confidence 9999999999975
No 16
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=99.46 E-value=1.7e-14 Score=109.95 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=59.9
Q ss_pred CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHH
Q 032139 53 FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAE 132 (146)
Q Consensus 53 ~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ 132 (146)
.+|++|.+ +..|.+|||++|+.+++++. ++ .+ ++ . -++||||+|+|+-.++|+|.|++||++|+
T Consensus 48 V~KRLf~s------r~~r~~VnLsrI~r~~k~~g-~~---g~--~v-V---v~gKVLg~G~L~~v~kl~V~A~~fS~sA~ 111 (186)
T 3izc_R 48 VLKALFLS------KINRPPVSVSRIARALKQEG-AA---NK--TV-V---VVGTVTDDARIFEFPKTTVAALRFTAGAR 111 (186)
T ss_dssp HHHHHHSC------TTTCCEEEHHHHHHHTTTTS-SS---SC--EE-E---ESSEEECCCCSSCCCCEEEEESCCCHHHH
T ss_pred HHHHHhCC------CcccCcccHHHHHHHhhccC-CC---CC--EE-E---EEeEEecCceEcccCCEEEEEEecCHHHH
Confidence 67899985 35788999999999887532 11 11 11 1 15799999999611389999999999999
Q ss_pred HHHHHcCCEEEEc
Q 032139 133 KKIKEAGGAVVLT 145 (146)
Q Consensus 133 ekIe~aGG~v~~~ 145 (146)
++||+|||+|+++
T Consensus 112 ekIe~AGG~v~~~ 124 (186)
T 3izc_R 112 AKIVKAGGECITL 124 (186)
T ss_dssp HHHHHHSEECCCS
T ss_pred HHHHHcCCEEEEH
Confidence 9999999999865
No 17
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=99.44 E-value=2.2e-14 Score=108.95 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=58.7
Q ss_pred CccCCcCCCCCCCCCeeeeEEechhhhhhcCcCeecccccCCCCeeecCCCCceEEecCCCCCCCCceEEEEeccCHHHH
Q 032139 53 FGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAE 132 (146)
Q Consensus 53 ~~K~GF~~f~~~~~~~~~~~INL~~L~~~~~~~~~i~~~~~~~~li~~~~~g~vKvLG~G~l~~~~~l~Ika~~~S~~A~ 132 (146)
.+|++|.+ +..|.+|||++|++++++. + ..+ .+| .++||||+|+|+-.++|+|.|.+||++|+
T Consensus 49 V~KRLf~s------r~nr~pVnLsrI~r~~~~~-e----~gk-~vV-----v~gKVLg~G~l~~v~kl~V~A~~fS~sA~ 111 (181)
T 4a17_N 49 ILKRLSSS------RLNKFPLSLSRIVKNLNET-N----KEQ-VIV-----STSTVTNDERLLTVPKLTVCALKFTETAR 111 (181)
T ss_dssp HHHHHSCC------GGGSCCEEHHHHHHSCCHH-H----HHS-EEE-----ESSEEECCTTCCSCCCCEEECSEECHHHH
T ss_pred HHHHHcCC------ccccCcccHHHHHHHhccc-c----CCC-EEE-----EEEEEcCCceEcccCCEEEEEeecCHHHH
Confidence 67899985 4578899999999987631 0 001 112 15799999999512469999999999999
Q ss_pred HHHHHcCCEEEEc
Q 032139 133 KKIKEAGGAVVLT 145 (146)
Q Consensus 133 ekIe~aGG~v~~~ 145 (146)
++||+|||+|+++
T Consensus 112 ekIe~AGG~v~~~ 124 (181)
T 4a17_N 112 KRILAAGGKCLTF 124 (181)
T ss_dssp HHHHTTTCEEECH
T ss_pred HHHHHcCCEEEEh
Confidence 9999999999865
No 18
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=81.32 E-value=0.39 Score=35.43 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=22.4
Q ss_pred CCCcccccccccCccc------cCCCCCCCCCCC
Q 032139 1 MTTRFKKNRKKRGHVS------AGHGRIGKHRKH 28 (146)
Q Consensus 1 m~~r~kk~rk~RG~~s------~G~G~~gq~r~~ 28 (146)
|.++.+|.|..||++| ||+|+.||+.++
T Consensus 1 m~~k~~k~R~gRg~GsG~~GKt~grGhkGqk~ra 34 (165)
T 1vq8_L 1 MTSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDA 34 (165)
T ss_dssp -CCHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTT
T ss_pred CCccccCcCCccCCCCCCCCCCCCCCCCCccccc
Confidence 7889999999999754 799999986664
No 19
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=68.92 E-value=4.3 Score=29.49 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=21.6
Q ss_pred ccccccCccccCCCCCCCCC--CCCCcCCcCCCCCc
Q 032139 7 KNRKKRGHVSAGHGRIGKHR--KHPGGRGNAGGMHH 40 (146)
Q Consensus 7 k~rk~RG~~s~G~G~~gq~r--~~~GgrG~aGg~~h 40 (146)
++++.|.-|.+| | .|+.+ +|+|++.++|+..+
T Consensus 13 ~~~~kRvGRG~g-g-~Gkt~GrG~KGqk~RsG~~~~ 46 (156)
T 2zjr_I 13 RKDRKRVGRGPG-G-TDKTAGRGHKGQKSRSGAGKG 46 (156)
T ss_dssp TTCCCCSSSCCC-C-CCSCSSSCCCCSSSSSCCSCC
T ss_pred ccCCcccCCCCC-C-CCCcCCCCCCCCCCCCCCCCC
Confidence 455667777777 5 34444 48999999888743
No 20
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=68.07 E-value=3.5 Score=32.49 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=22.1
Q ss_pred ccccccCccccCCCCCCCCC--CCCCcCCcCCCCC
Q 032139 7 KNRKKRGHVSAGHGRIGKHR--KHPGGRGNAGGMH 39 (146)
Q Consensus 7 k~rk~RG~~s~G~G~~gq~r--~~~GgrG~aGg~~ 39 (146)
++++.|.-|-+|.|+ |+.+ ||+|++.++|+..
T Consensus 77 ~k~kkRvGRG~GSG~-GKT~GRGhKGQkaRsG~~~ 110 (257)
T 3bbo_N 77 RKRPKRKGRGIAAGQ-GASCGFGMRGQKSRSGPGI 110 (257)
T ss_dssp CSCCCCCSSCCCCSC-SSSCSSSCCCCGGGTSSCS
T ss_pred ccCCcCCcCcCCCCC-CCcCCCCCCCCcCcCCCCC
Confidence 455667777677764 5544 4888888888874
No 21
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=62.75 E-value=4.3 Score=29.07 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=19.4
Q ss_pred cCCCCCCCCCCCCCcC-CcCCCCCceeeeeccc-CCCC--Ccc
Q 032139 17 AGHGRIGKHRKHPGGR-GNAGGMHHHRILFDKY-HPGF--FGK 55 (146)
Q Consensus 17 ~G~G~~gq~r~~~Ggr-G~aGg~~h~~~~~~~~-~p~~--~~K 55 (146)
-++|+.--.+++.|+. ++.|| ..|+++ +|.+ |.|
T Consensus 10 k~RG~~t~G~G~~gq~r~~~Gg-----~G~aGgq~h~~~~~~k 47 (148)
T 2zkr_l 10 KLRGHVSHGHGRIGKHRKHPGG-----RGNAGGMHHHRINFDK 47 (148)
T ss_dssp HTTTTSCSSCCSCSCC--CCSC-----SSSTTTTTTTCSSCTT
T ss_pred cCCCCcCcCCCCCCCCCCCCCC-----CCcccCCCCCEEeccc
Confidence 4677533344555554 36666 478888 6653 555
No 22
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=31.57 E-value=31 Score=23.45 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCEEE
Q 032139 129 KTAEKKIKEAGGAVV 143 (146)
Q Consensus 129 ~~A~ekIe~aGG~v~ 143 (146)
..|++.||++||+|.
T Consensus 27 ~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 27 DEVKAMIEKLGGKLT 41 (113)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCEEc
Confidence 678999999999986
No 23
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=27.23 E-value=47 Score=21.12 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCEEEE
Q 032139 129 KTAEKKIKEAGGAVVL 144 (146)
Q Consensus 129 ~~A~ekIe~aGG~v~~ 144 (146)
+.+++++|+||.+|++
T Consensus 58 e~ik~~Le~aGA~Vel 73 (74)
T 1ctf_A 58 EALKKALEEAGAEVEV 73 (74)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCEEEe
Confidence 4567789999999875
No 24
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=25.18 E-value=73 Score=18.83 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.0
Q ss_pred ceEEEEe--ccCHHHHHHHHHc
Q 032139 119 PVVVKAK--LVSKTAEKKIKEA 138 (146)
Q Consensus 119 ~l~Ika~--~~S~~A~ekIe~a 138 (146)
.+++..+ ++++.-+|+||+.
T Consensus 22 ~Vsf~Ld~~~iP~~~IeKIE~l 43 (52)
T 3kz5_E 22 KMVLNLDRSRVPTECIEKIEAI 43 (52)
T ss_dssp EEEEEEETTTSCHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHH
Confidence 5666665 8999999999973
No 25
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=24.05 E-value=50 Score=22.09 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.9
Q ss_pred CHHHHHHHHHcCCEEE
Q 032139 128 SKTAEKKIKEAGGAVV 143 (146)
Q Consensus 128 S~~A~ekIe~aGG~v~ 143 (146)
-..|++.||++||+|.
T Consensus 49 R~e~~~~i~~~Gg~v~ 64 (109)
T 2k6g_A 49 RDEAKSLIERYGGKVT 64 (109)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCEee
Confidence 3678999999999986
No 26
>2jo4_A KIA7; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=23.81 E-value=21 Score=17.77 Aligned_cols=17 Identities=29% Similarity=0.297 Sum_probs=12.0
Q ss_pred cCHHHHHHHHHcCCEEE
Q 032139 127 VSKTAEKKIKEAGGAVV 143 (146)
Q Consensus 127 ~S~~A~ekIe~aGG~v~ 143 (146)
+.-.|+.+|-+|||-..
T Consensus 7 aaikaiaaiikaggy~~ 23 (26)
T 2jo4_A 7 AAIKAIAAIIKAGGYXX 23 (26)
T ss_pred HHHHHHHHHHHcCCccc
Confidence 34467788888998643
No 27
>2jo5_A KIA7F; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=23.70 E-value=21 Score=17.76 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=11.2
Q ss_pred cCHHHHHHHHHcCCEE
Q 032139 127 VSKTAEKKIKEAGGAV 142 (146)
Q Consensus 127 ~S~~A~ekIe~aGG~v 142 (146)
+.-.|+.+|-+|||-.
T Consensus 7 aaikaiaaiikaggf~ 22 (26)
T 2jo5_A 7 AAIKAIAAIIKAGGFX 22 (26)
T ss_pred HHHHHHHHHHHcCCcc
Confidence 3446778888899854
No 28
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=23.64 E-value=53 Score=21.23 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCEEE
Q 032139 129 KTAEKKIKEAGGAVV 143 (146)
Q Consensus 129 ~~A~ekIe~aGG~v~ 143 (146)
..|++.||++||+|.
T Consensus 24 ~e~~~~i~~~Gg~v~ 38 (92)
T 1l7b_A 24 EEVKALLRRLGAKVT 38 (92)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCEEe
Confidence 678999999999986
No 29
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.27 E-value=60 Score=21.93 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCEEE
Q 032139 129 KTAEKKIKEAGGAVV 143 (146)
Q Consensus 129 ~~A~ekIe~aGG~v~ 143 (146)
..|++.||++||+|.
T Consensus 40 ~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 40 DEAKSLIERYGGKVT 54 (112)
T ss_dssp HHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHcCCEEe
Confidence 678999999999985
Done!