RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032139
(146 letters)
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 74.3 bits (182), Expect = 2e-18
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 7 KNRKKRGHVSAGHGRIGKHRK--HPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKL 64
K +++RG + G G R H GGRG+AG H F + P GK G + K+
Sbjct: 3 KKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHE---FHNHEP--LGKSGFKRPQKV 57
Query: 65 RNKF-HCPIVNIDKLWSMVPQDVKAKASKDNV------PMIDVTQFGYFKVLGKGVLPEN 117
+ + + ID+ +++ D A+ + + Y KVLG G +
Sbjct: 58 QEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVR-- 115
Query: 118 QPVVVKAKLVSKTAEKKIKEAGGAVVLT 145
+ + A S+ A +K++ AGG+V LT
Sbjct: 116 HELTLIADDFSEGAREKVEGAGGSVELT 143
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
thermophilus [TaxId: 274]}
Length = 146
Score = 56.2 bits (135), Expect = 1e-11
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 6/141 (4%)
Query: 4 RFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHK 63
++ R RG S GHG+ R H G + +GG+ R +
Sbjct: 9 NKRRKRVGRGPGS-GHGKTAT-RGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQ 66
Query: 64 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVK 123
+ + P L + + + + V + + K+LG+G E +P+ V
Sbjct: 67 VPGEIKRPRYQGVNLKDLARFEGE-VTPELLVRAGLLKKGYRLKILGEG---EAKPLKVV 122
Query: 124 AKLVSKTAEKKIKEAGGAVVL 144
A SK+A +K+K AGG VL
Sbjct: 123 AHAFSKSALEKLKAAGGEPVL 143
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
{Escherichia coli [TaxId: 562]}
Length = 140
Score = 42.3 bits (99), Expect = 2e-06
Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 4 RFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHK 63
+ R RG S G G+ G R H G + +GG R F+ + ++ F
Sbjct: 10 KKAGKRLGRGIGS-GLGKTGG-RGHKGQKSRSGG--GVRRGFEGGQMPLYRRLPKFGFTS 65
Query: 64 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVK 123
+ I + L + V K I Q + KV+ G + PV V+
Sbjct: 66 RKAAITAEI-RLSDLAKVEGGVVDLNTLKAA--NIIGIQIEFAKVILAGEV--TTPVTVR 120
Query: 124 AKLVSKTAEKKIKEAGGAV 142
V+K A I+ AGG +
Sbjct: 121 GLRVTKGARAAIEAAGGKI 139
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 115
Score = 37.8 bits (88), Expect = 6e-05
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 107 KVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 144
KVLG GVL + V V A S TAE KI + G AV L
Sbjct: 63 KVLGSGVL--QKDVTVAAVDFSGTAETKIDQVGEAVSL 98
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 141
Score = 38.4 bits (89), Expect = 6e-05
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 11/141 (7%)
Query: 6 KKNRKKRGHVSAGHGR-IGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKL 64
+K+RK+ G G + G+ K R AG + K G
Sbjct: 10 RKDRKRVGRGPGGTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARL-PKRGFNNVGTT 68
Query: 65 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKA 124
+V + +L + + + + K+L G + ++ V V
Sbjct: 69 YE-----VVKLSQLQDLEDTTFDRDTLEAY--RLVRRKNRPVKLLASGEI--SRAVTVHV 119
Query: 125 KLVSKTAEKKIKEAGGAVVLT 145
S A K ++ AGG VVL
Sbjct: 120 DAASAAAIKAVEAAGGRVVLP 140
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme
synthetase, catalytic (central) domain {Escherichia coli
[TaxId: 562]}
Length = 207
Score = 27.6 bits (60), Expect = 0.48
Identities = 12/57 (21%), Positives = 16/57 (28%)
Query: 16 SAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPI 72
AG GR G+ P G M G +G+ LR +
Sbjct: 50 QAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKV 106
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain
{Mastadenovirus H2 [TaxId: 10515]}
Length = 203
Score = 26.6 bits (59), Expect = 0.95
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 10/30 (33%)
Query: 45 FDKYHPGFFGKVGMRYFHKLRNKFHCPIVN 74
+DK PGF +K C IVN
Sbjct: 24 YDKRFPGFVSP----------HKLACAIVN 43
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial
phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId:
1188]}
Length = 149
Score = 25.1 bits (54), Expect = 2.8
Identities = 9/62 (14%), Positives = 17/62 (27%)
Query: 14 HVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIV 73
G + + IL D PG G+ ++ + P+V
Sbjct: 37 RCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVV 96
Query: 74 NI 75
+
Sbjct: 97 IM 98
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 24.0 bits (51), Expect = 7.0
Identities = 10/96 (10%), Positives = 19/96 (19%), Gaps = 4/96 (4%)
Query: 18 GHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDK 77
G G + + G G AG + H G G +
Sbjct: 15 GGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGC----GRTGCVEAIASGRGIAAAAQG 70
Query: 78 LWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGV 113
+ + + L + +
Sbjct: 71 ELAGADAKTIFTRAGQGDEQAQQLIHRSARTLARLI 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.430
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 592,252
Number of extensions: 27464
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 22
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)