Query 032143
Match_columns 146
No_of_seqs 138 out of 1061
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:10:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02642 copper, zinc superoxi 100.0 5E-47 1.1E-51 287.4 17.5 139 1-141 1-139 (164)
2 PLN02386 superoxide dismutase 100.0 3.2E-46 6.9E-51 280.6 16.7 132 10-141 2-133 (152)
3 cd00305 Cu-Zn_Superoxide_Dismu 100.0 1.3E-41 2.8E-46 253.3 17.2 130 11-141 2-132 (144)
4 KOG0441 Cu2+/Zn2+ superoxide d 100.0 1.8E-40 3.9E-45 247.1 13.4 131 11-141 3-135 (154)
5 PRK15388 Cu/Zn superoxide dism 100.0 1.9E-38 4.2E-43 242.8 16.7 117 17-136 34-159 (177)
6 PRK10290 superoxide dismutase; 100.0 2.3E-37 5E-42 236.4 16.5 114 19-136 34-156 (173)
7 PF00080 Sod_Cu: Copper/zinc s 100.0 9.5E-38 2.1E-42 230.9 13.3 122 12-133 1-125 (142)
8 PLN02957 copper, zinc superoxi 100.0 8.4E-36 1.8E-40 238.0 16.0 116 9-133 80-195 (238)
9 COG2032 SodC Cu/Zn superoxide 100.0 7.3E-35 1.6E-39 222.0 14.6 126 11-137 30-163 (179)
10 KOG4656 Copper chaperone for s 100.0 8.2E-34 1.8E-38 220.2 7.4 119 9-135 81-199 (247)
11 PF07452 CHRD: CHRD domain; I 84.8 5.7 0.00012 27.7 6.8 36 21-56 19-55 (119)
12 smart00754 CHRD A domain in th 82.3 9.3 0.0002 26.8 7.0 37 20-56 18-54 (118)
13 PF07731 Cu-oxidase_2: Multico 44.4 24 0.00051 24.8 2.7 21 37-57 43-63 (138)
14 PF08896 DUF1842: Domain of un 38.3 65 0.0014 23.1 4.1 27 18-44 29-55 (114)
15 PF07495 Y_Y_Y: Y_Y_Y domain; 38.1 28 0.0006 21.3 1.9 19 39-57 30-48 (66)
16 COG5637 Predicted integral mem 27.4 75 0.0016 25.0 3.1 28 21-48 151-178 (217)
17 PF15357 SEEK1: Psoriasis susc 26.0 33 0.00072 24.9 0.9 29 67-95 34-62 (149)
18 PF09912 DUF2141: Uncharacteri 25.0 78 0.0017 22.2 2.6 21 36-56 41-61 (112)
No 1
>PLN02642 copper, zinc superoxide dismutase
Probab=100.00 E-value=5e-47 Score=287.38 Aligned_cols=139 Identities=67% Similarity=1.111 Sum_probs=130.8
Q ss_pred CCccccccceeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCCCCCCCCCccCCCCCCCCC
Q 032143 1 METGATKATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGA 80 (146)
Q Consensus 1 ~~~~~~~~~~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnp~~~~hg~ 80 (146)
||+| +...+|+|+|++.+.++|+|+|+|..++.|+|+++|+||+||+|+|||||+|||+++|.|||+||||.++.|+.
T Consensus 1 ~~~~--~~~~~A~a~~~g~~~v~G~v~f~q~~~g~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~ 78 (164)
T PLN02642 1 MEAP--RGNLRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGP 78 (164)
T ss_pred CCcc--CCCeeEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCC
Confidence 6655 56788999999888899999999987667999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCCCCCCCc
Q 032143 81 PSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLD 141 (146)
Q Consensus 81 p~~~~~~~GDLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~g~~~~~ 141 (146)
|++..||+||||||+++++|++++.++++.++|.++++|+|||||||+.+|||++++++.|
T Consensus 79 ~~~~~rH~GDLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa~~DD~~~~~~~~s 139 (164)
T PLN02642 79 PNEEERHAGDLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLS 139 (164)
T ss_pred CCcCCCcccccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEeccCCccCcCccccc
Confidence 9999999999999999999999999999999999999999999999999999999987765
No 2
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=100.00 E-value=3.2e-46 Score=280.56 Aligned_cols=132 Identities=63% Similarity=1.080 Sum_probs=126.1
Q ss_pred eeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 032143 10 VKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTG 89 (146)
Q Consensus 10 ~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnp~~~~hg~p~~~~~~~G 89 (146)
.+|+|+|++.+.++|+|+|+|..++.+.|+++|+||+||+|+|||||+|+|+++|+|||+||||.++.|+.|.+..||+|
T Consensus 2 ~~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~G 81 (152)
T PLN02386 2 VKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAG 81 (152)
T ss_pred ceEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCccc
Confidence 47999999877899999999987777999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCCCCCCCc
Q 032143 90 DLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLD 141 (146)
Q Consensus 90 DLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~g~~~~~ 141 (146)
|||||.++++|++++.+++++++|.++++|+|||||||+++|||++++++.|
T Consensus 82 DLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~DD~~~~~~~~s 133 (152)
T PLN02386 82 DLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADPDDLGKGGHELS 133 (152)
T ss_pred cccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccCCCcCCCccccc
Confidence 9999999999999999999999999999999999999999999999988765
No 3
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=100.00 E-value=1.3e-41 Score=253.29 Aligned_cols=130 Identities=55% Similarity=0.953 Sum_probs=122.2
Q ss_pred eEEEEEcC-CCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 032143 11 KAVALISG-ATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTG 89 (146)
Q Consensus 11 ~Ava~l~~-~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnp~~~~hg~p~~~~~~~G 89 (146)
+|+|+|++ ++.++|+|+|+|.++ .|+|+++++||+||+|+|||||+|+|+++|.|+|+||||+++.|+.|.+..||+|
T Consensus 2 ~a~~~l~~~~g~v~G~v~f~q~~~-~v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h~G 80 (144)
T cd00305 2 SAVAVLKGPDGKVVGTVTFTQQSG-GVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRHAG 80 (144)
T ss_pred cEEEEEECCCCceEEEEEEEECCC-CEEEEEEEECCCCCceeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCCCC
Confidence 68999986 357999999999987 6999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCCCCCCCc
Q 032143 90 DLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLD 141 (146)
Q Consensus 90 DLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~g~~~~~ 141 (146)
|||||+++++|+++++|++++++|++..+++|||||||+.+|||+.++++.|
T Consensus 81 DLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH~~~Dd~~~~p~~~s 132 (144)
T cd00305 81 DLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHAGQDDLGKGPDELS 132 (144)
T ss_pred cCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEecCCCCCCCCCCccc
Confidence 9999999999999999999999999888999999999999999998876554
No 4
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=247.09 Aligned_cols=131 Identities=53% Similarity=0.875 Sum_probs=124.3
Q ss_pred eEEEEEcCCC-CeEEEEEEEEcC-CCcEEEEEEeccCCCCeeeEEEeccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 032143 11 KAVALISGAT-SVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHT 88 (146)
Q Consensus 11 ~Ava~l~~~~-~v~G~v~f~q~~-~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnp~~~~hg~p~~~~~~~ 88 (146)
+|+|+|+++. .|.|+|.|+|.. ...+.|++.++||+||+|+||||+|||.+++|.|||+||||....||.|.++.||.
T Consensus 3 ~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH~ 82 (154)
T KOG0441|consen 3 QAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRHV 82 (154)
T ss_pred ceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcCCCCCCCcccCCCCcccccccc
Confidence 7899999865 899999999944 44899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCCCCCCCc
Q 032143 89 GDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLD 141 (146)
Q Consensus 89 GDLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~g~~~~~ 141 (146)
||||||.++++|.+..++.+..++|+|+++|+|||+|||+++||+|+|+++.|
T Consensus 83 gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa~~ddLg~G~~~~s 135 (154)
T KOG0441|consen 83 GDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHAGEDDLGKGGHELS 135 (154)
T ss_pred ccccccccCCCceEEEEEccceEEEeeccccceeEEEEeccCccccCCchhhh
Confidence 99999999999999999999999999999999999999999999999997765
No 5
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=100.00 E-value=1.9e-38 Score=242.79 Aligned_cols=117 Identities=27% Similarity=0.530 Sum_probs=105.6
Q ss_pred cCCCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCC----C----CCCCCCccCCCCC-CCCCCCCCCCC
Q 032143 17 SGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTN----G----CNSTGPHFNPLKK-DHGAPSDNERH 87 (146)
Q Consensus 17 ~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~----~----c~saGgHfnp~~~-~hg~p~~~~~~ 87 (146)
++.+.++|+|+|+|..++ |+|+++++||+||+|+|||||+|||+. + |.||||||||++. .|+.|++..+|
T Consensus 34 ~~~g~~~G~v~f~~~~~g-v~I~~~l~GL~pG~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~p~~~~~H 112 (177)
T PRK15388 34 SGTGENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGH 112 (177)
T ss_pred CCCCceEEEEEEEEcCCc-EEEEEEEcCCCCcceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCCCCCCCCCCCC
Confidence 356889999999998766 999999999999999999999999973 2 8999999999997 79999888899
Q ss_pred CCCCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCCC
Q 032143 88 TGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKV 136 (146)
Q Consensus 88 ~GDLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~g 136 (146)
+||||||+++++|++++.++++.+. +.++|+|||||||+++|||+..
T Consensus 113 ~GDLpNi~a~~dG~a~~~~~~~~~~--~~~~i~GralVIHa~~DD~~~~ 159 (177)
T PRK15388 113 LGDLPGLVVNADGTATYPLLAPRLK--SLSELKGHSLMIHKGGDNYSDK 159 (177)
T ss_pred cCcCcCEEECCCccEEEEEEeCCcc--cCcccCCcEEEEECCCCCCCCC
Confidence 9999999999999999999988764 3479999999999999999743
No 6
>PRK10290 superoxide dismutase; Provisional
Probab=100.00 E-value=2.3e-37 Score=236.44 Aligned_cols=114 Identities=28% Similarity=0.523 Sum_probs=103.1
Q ss_pred CCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCC----C----CCCCCCccCCCCC-CCCCCCCCCCCCC
Q 032143 19 ATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTN----G----CNSTGPHFNPLKK-DHGAPSDNERHTG 89 (146)
Q Consensus 19 ~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~----~----c~saGgHfnp~~~-~hg~p~~~~~~~G 89 (146)
.+.+.|+|+|+|..++ |+|+++++||+||+|+|||||+|||+. + |.|||+||||.++ .|+.|.. .+|+|
T Consensus 34 ~g~~~G~v~f~~~~~g-v~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~-~~H~G 111 (173)
T PRK10290 34 VGQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEG-AGHLG 111 (173)
T ss_pred CCceEEEEEEEEcCCc-EEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCCCCCCC-CCCcC
Confidence 5899999999999765 999999999999999999999999983 2 8999999999998 7888864 68999
Q ss_pred CCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCCC
Q 032143 90 DLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKV 136 (146)
Q Consensus 90 DLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~g 136 (146)
|||||+++++|++++.++++.++ +.++|+|||||||+++|||+.+
T Consensus 112 DL~ni~a~~dG~a~~~~~~~~~~--~~~~i~GralVIH~~~DD~~~~ 156 (173)
T PRK10290 112 DLPALVVNNDGKATDPVIAPRLK--SLDEVKDKALMVHVGGDNMSDQ 156 (173)
T ss_pred cccCEEECCCeeEEEEEEeCCcc--CccccCCcEEEEECCCCCCCCC
Confidence 99999999999999999988764 3579999999999999999865
No 7
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=100.00 E-value=9.5e-38 Score=230.93 Aligned_cols=122 Identities=45% Similarity=0.840 Sum_probs=114.4
Q ss_pred EEEEEcC-CCCeEEEEEEEEcCCC-cEEEEEEeccCCCCeeeEEEeccCCC-CCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 032143 12 AVALISG-ATSVKGSLHFVQGPNG-VTHVKGKITGLKPGLHGFHIHALGDT-TNGCNSTGPHFNPLKKDHGAPSDNERHT 88 (146)
Q Consensus 12 Ava~l~~-~~~v~G~v~f~q~~~g-~v~v~~~v~GL~~g~hg~HIHe~gd~-~~~c~saGgHfnp~~~~hg~p~~~~~~~ 88 (146)
|+|+|++ .+.|+|+|+|+|..+. .+.|+++++||++|.|+||||++|+| +.+|.++|+||||.++.|+.|+...|++
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~ 80 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHA 80 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCT
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceecCccccccCCcccccccc
Confidence 8999985 5789999999999954 59999999999999999999999999 6789999999999999999998778999
Q ss_pred CCCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCC
Q 032143 89 GDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDL 133 (146)
Q Consensus 89 GDLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~ 133 (146)
|||++++++++|.+++.|++..++|+|.++|+|||||||+.+|||
T Consensus 81 GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~~d~ 125 (142)
T PF00080_consen 81 GDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIVIHSGPDDF 125 (142)
T ss_dssp TEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEEEESSSSTT
T ss_pred ccccccccccCCceEEEEEeeeEeccCCccccCCEEEEEeCCCCc
Confidence 999999999999999999999999999999999999999999998
No 8
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=8.4e-36 Score=238.02 Aligned_cols=116 Identities=33% Similarity=0.552 Sum_probs=107.3
Q ss_pred ceeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 032143 9 TVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHT 88 (146)
Q Consensus 9 ~~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnp~~~~hg~p~~~~~~~ 88 (146)
..+|+|.+++. .|+|+|+|+|.+++.++|+++|+||+||.|+|||||+|||+++|.|||+||||.++.|+ .+|+
T Consensus 80 ~~~av~~~~g~-~v~G~v~~~~~~~~~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~-----~~h~ 153 (238)
T PLN02957 80 VSAAVAEFKGP-DIFGVVRFAQVSMELARIEAAFSGLSPGTHGWSINEYGDLTRGAASTGKVYNPSDDDTD-----EEPL 153 (238)
T ss_pred cceEEEEecCC-ceEEEEEEEEcCCCCEEEEEEEcCCCCCcEEEEEcCCCCCCCCccccCCCCCCccCCCC-----CCCC
Confidence 35789999874 69999999998766799999999999999999999999999999999999999999997 6899
Q ss_pred CCCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCC
Q 032143 89 GDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDL 133 (146)
Q Consensus 89 GDLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~ 133 (146)
||||||.++++|++++++.+..++| ++|+|||||||+.+|+-
T Consensus 154 GDLgni~~~~~G~a~~~~~~~~~~l---~~iiGrs~vih~~~D~~ 195 (238)
T PLN02957 154 GDLGTLEADENGEATFSGTKEKLKV---WDLIGRSLAVYATADKS 195 (238)
T ss_pred CccCCEEeCCCceEEEEEECCCcCc---cccCCcEEEEEeCCCCC
Confidence 9999999999999999999888887 69999999999999974
No 9
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-35 Score=222.05 Aligned_cols=126 Identities=36% Similarity=0.597 Sum_probs=116.1
Q ss_pred eEEEEEc-CCCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCC------CCCCCCCccCCC-CCCCCCCC
Q 032143 11 KAVALIS-GATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTN------GCNSTGPHFNPL-KKDHGAPS 82 (146)
Q Consensus 11 ~Ava~l~-~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~------~c~saGgHfnp~-~~~hg~p~ 82 (146)
++.+.+. ..+...|+|+|++...+ +.++..+.+|+||+|+|||||+|+|++ .|.||||||||. ...|+.|+
T Consensus 30 ~~~~~~~~~~G~~vG~vt~~e~~~g-~~~~~~~~~L~pg~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~ 108 (179)
T COG2032 30 KANAVLVDGTGKDVGTVTITETGYG-LLFTPALGGLPPGEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPN 108 (179)
T ss_pred cceeeccCCCCceeEEEEEeecCCc-eEEeecccCCCCcceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCC
Confidence 4555564 35688999999999876 999999999999999999999999987 599999999999 68999999
Q ss_pred CCCCCCCCCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCCCC
Q 032143 83 DNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVS 137 (146)
Q Consensus 83 ~~~~~~GDLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~g~ 137 (146)
.+.+|+|||++|+++++|.++..|++++++|.+..++.|||||||+.+|||....
T Consensus 109 ~~~~H~GDLP~L~v~~dG~a~~~v~~~~~~l~~l~~v~G~alvIHag~Dd~~~~P 163 (179)
T COG2032 109 ADGGHAGDLPNLFVNADGKATLPVLAPRLKLKGLLEVKGRALVIHAGGDDYSTQP 163 (179)
T ss_pred CCCCCcCcCcceEECCCCcEEEEEecccceeccccccCCeEEEEEcCCccccCCC
Confidence 9899999999999999999999999999999999999999999999999998765
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-34 Score=220.21 Aligned_cols=119 Identities=44% Similarity=0.799 Sum_probs=109.9
Q ss_pred ceeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 032143 9 TVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHT 88 (146)
Q Consensus 9 ~~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnp~~~~hg~p~~~~~~~ 88 (146)
-..|++.+.+...|.|.|||.|.....++|+++++||+||.|++|||||||.+++|.|+|.||||+..+|++|..
T Consensus 81 l~at~a~~~~~~~v~GvvRf~qvt~ek~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~~----- 155 (247)
T KOG4656|consen 81 LLATVAKYTGPQAVQGVVRFVQVTEEKTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPNE----- 155 (247)
T ss_pred HHHHHHHhcCCccceeEEEEEEeccccEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCCc-----
Confidence 345566676767999999999999888999999999999999999999999999999999999999999998863
Q ss_pred CCCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCC
Q 032143 89 GDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGK 135 (146)
Q Consensus 89 GDLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~ 135 (146)
|||||+.++++|++.+++.|..|++ |++||||+||.+..||+|+
T Consensus 156 gDLGn~~ad~nGraf~s~~de~Lkv---wdlIGRsvVi~k~~ddlgg 199 (247)
T KOG4656|consen 156 GDLGNNRADKNGRAFFSAPDEKLKV---WDLIGRSVVISKSLDDLGG 199 (247)
T ss_pred ccccccccccCCcEEEecccccccH---hhhhceeEEEeccccccCC
Confidence 9999999999999999999999998 6999999999999999943
No 11
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=84.81 E-value=5.7 Score=27.68 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.4
Q ss_pred CeEEEEEEEEcCCC-cEEEEEEeccCCCCeeeEEEec
Q 032143 21 SVKGSLHFVQGPNG-VTHVKGKITGLKPGLHGFHIHA 56 (146)
Q Consensus 21 ~v~G~v~f~q~~~g-~v~v~~~v~GL~~g~hg~HIHe 56 (146)
.-.|.+.|+=..++ .+.+++.++||....-.+|||.
T Consensus 19 ~a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~ 55 (119)
T PF07452_consen 19 SASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ 55 (119)
T ss_pred CCEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc
Confidence 56899999887765 6889999999966678999998
No 12
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=82.26 E-value=9.3 Score=26.79 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=29.9
Q ss_pred CCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEec
Q 032143 20 TSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHA 56 (146)
Q Consensus 20 ~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe 56 (146)
....|.+.|+-..+..+.+++.++||..-.-..|||.
T Consensus 18 t~a~G~a~~~l~~~~~l~y~i~~~gl~~~~~~~hih~ 54 (118)
T smart00754 18 TGAVGGAWFTLDDDGSLHYQVTLSGLSGPETAAHIHE 54 (118)
T ss_pred CCcEEEEEEEECCCCEEEEEEEEcccCCCceeeeEec
Confidence 3668999998876667889999999986333899998
No 13
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=44.37 E-value=24 Score=24.82 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=16.4
Q ss_pred EEEEEeccCCCCeeeEEEecc
Q 032143 37 HVKGKITGLKPGLHGFHIHAL 57 (146)
Q Consensus 37 ~v~~~v~GL~~g~hg~HIHe~ 57 (146)
.+++.+.+.....|.||+|-.
T Consensus 43 ~v~~~l~N~~~~~Hp~HlHG~ 63 (138)
T PF07731_consen 43 VVEIVLQNNGSMPHPFHLHGH 63 (138)
T ss_dssp EEEEEEEECTTSSEEEEETTS
T ss_pred EEEEEEECCCCCccceEEEee
Confidence 567777777677899999965
No 14
>PF08896 DUF1842: Domain of unknown function (DUF1842); InterPro: IPR014992 This domain is found at the N terminus of proteins that are functionally uncharacterised.
Probab=38.32 E-value=65 Score=23.09 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=22.4
Q ss_pred CCCCeEEEEEEEEcCCCcEEEEEEecc
Q 032143 18 GATSVKGSLHFVQGPNGVTHVKGKITG 44 (146)
Q Consensus 18 ~~~~v~G~v~f~q~~~g~v~v~~~v~G 44 (146)
+...|+|.++++|...-++.|...+.|
T Consensus 29 ~~~~VsG~a~ItQat~ppl~~~s~v~G 55 (114)
T PF08896_consen 29 PDKSVSGRARITQATNPPLNFHSDVWG 55 (114)
T ss_pred CCCEEEeEEEEEEecCCCcceEEEeEE
Confidence 467999999999988666888887776
No 15
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=38.08 E-value=28 Score=21.26 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=13.3
Q ss_pred EEEeccCCCCeeeEEEecc
Q 032143 39 KGKITGLKPGLHGFHIHAL 57 (146)
Q Consensus 39 ~~~v~GL~~g~hg~HIHe~ 57 (146)
.++++.|+||.|-|+|...
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp EEEEES--SEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEE
Confidence 6778888888888888753
No 16
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=27.42 E-value=75 Score=25.04 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=23.1
Q ss_pred CeEEEEEEEEcCCCcEEEEEEeccCCCC
Q 032143 21 SVKGSLHFVQGPNGVTHVKGKITGLKPG 48 (146)
Q Consensus 21 ~v~G~v~f~q~~~g~v~v~~~v~GL~~g 48 (146)
.-+|.|+|+..++..+.|.+.++--+||
T Consensus 151 ~NsG~VrF~~~pg~~t~V~v~lsY~~Pg 178 (217)
T COG5637 151 ENSGAVRFYDAPGDSTEVKVTLSYRPPG 178 (217)
T ss_pred CCCccEEeeeCCCCceEEEEEEEecCCc
Confidence 3479999999997777899998877775
No 17
>PF15357 SEEK1: Psoriasis susceptibility 1 candidate 1
Probab=25.96 E-value=33 Score=24.87 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=22.8
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCcee
Q 032143 67 TGPHFNPLKKDHGAPSDNERHTGDLGNIV 95 (146)
Q Consensus 67 aGgHfnp~~~~hg~p~~~~~~~GDLgni~ 95 (146)
.-+|.||..-.|--|.+.-.|+|||-.+.
T Consensus 34 ~pph~npdrlch~e~anhfwhagdlq~~t 62 (149)
T PF15357_consen 34 RPPHINPDRLCHMEPANHFWHAGDLQTMT 62 (149)
T ss_pred cCCCCCcchhhcccccccccccchhhhhh
Confidence 45788998877877777889999995544
No 18
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=25.04 E-value=78 Score=22.20 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.0
Q ss_pred EEEEEEeccCCCCeeeEEEec
Q 032143 36 THVKGKITGLKPGLHGFHIHA 56 (146)
Q Consensus 36 v~v~~~v~GL~~g~hg~HIHe 56 (146)
-.+++.+..||||.|++-|..
T Consensus 41 ~~~~~~f~~lp~G~YAi~v~h 61 (112)
T PF09912_consen 41 GTVTITFEDLPPGTYAIAVFH 61 (112)
T ss_pred CcEEEEECCCCCccEEEEEEE
Confidence 368889999999999998874
Done!