BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032147
         (146 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IT8|D Chain D, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
 pdb|3IT8|E Chain E, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
 pdb|3IT8|F Chain F, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
 pdb|3IT8|J Chain J, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
 pdb|3IT8|K Chain K, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
 pdb|3IT8|L Chain L, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
          Length = 324

 Score = 28.1 bits (61), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 28  GVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGRVDCYNCS 75
           G P ++   K +        VR  ++   +P C+V H T     Y CS
Sbjct: 249 GFPWNIKKDKDANTYSLTDLVRTTSKMSSQPVCVVFHDTLEAQVYTCS 296


>pdb|3T7V|A Chain A, Crystal Structure Of Methylornithine Synthase (Pylb)
          Length = 350

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 72  YNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLIYCSRCLGTGEYRYPMGFHFVK 127
           YNC  +   N+  LTM    E  + CKT  G G       +G   Y Y     FV+
Sbjct: 80  YNC--RNEINRYRLTM---EEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVE 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,924,798
Number of Sequences: 62578
Number of extensions: 207869
Number of successful extensions: 356
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 14
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)