Query 032147
Match_columns 146
No_of_seqs 177 out of 1382
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.8 1.4E-20 3.1E-25 158.1 9.1 96 25-128 116-220 (371)
2 PRK14282 chaperone protein Dna 99.8 7.8E-19 1.7E-23 148.1 9.9 98 26-129 127-233 (369)
3 PRK14278 chaperone protein Dna 99.8 2.2E-18 4.7E-23 145.9 9.9 98 26-129 114-220 (378)
4 PRK14276 chaperone protein Dna 99.8 2.4E-18 5.3E-23 145.6 9.3 97 26-128 121-226 (380)
5 PRK14280 chaperone protein Dna 99.8 2.5E-18 5.4E-23 145.4 9.0 97 26-128 118-223 (376)
6 PRK14298 chaperone protein Dna 99.8 2E-18 4.4E-23 146.1 8.3 98 26-129 116-222 (377)
7 TIGR02349 DnaJ_bact chaperone 99.8 2.7E-18 5.9E-23 143.8 8.8 98 26-129 118-224 (354)
8 PRK14296 chaperone protein Dna 99.7 4.7E-18 1E-22 143.6 9.0 98 26-129 124-230 (372)
9 PRK14277 chaperone protein Dna 99.7 4.7E-18 1E-22 144.1 8.9 97 26-128 130-235 (386)
10 PRK14297 chaperone protein Dna 99.7 6.9E-18 1.5E-22 142.8 9.7 97 26-128 123-228 (380)
11 PRK14281 chaperone protein Dna 99.7 5.6E-18 1.2E-22 144.2 8.6 98 26-129 138-243 (397)
12 PRK14287 chaperone protein Dna 99.7 8.1E-18 1.8E-22 142.1 9.3 97 26-128 113-218 (371)
13 PRK14289 chaperone protein Dna 99.7 1.2E-17 2.5E-22 141.7 8.7 98 26-129 129-235 (386)
14 PRK14279 chaperone protein Dna 99.7 1.5E-17 3.3E-22 141.4 9.0 94 26-129 148-250 (392)
15 PRK14286 chaperone protein Dna 99.7 1.7E-17 3.6E-22 140.2 8.5 94 26-129 125-227 (372)
16 PRK14284 chaperone protein Dna 99.7 2.4E-17 5.3E-22 140.0 8.8 93 26-128 133-234 (391)
17 PRK14285 chaperone protein Dna 99.7 2.4E-17 5.1E-22 139.0 8.3 94 26-129 121-223 (365)
18 PRK14295 chaperone protein Dna 99.7 3.3E-17 7.1E-22 139.2 8.6 94 26-129 141-243 (389)
19 PRK14293 chaperone protein Dna 99.7 3.3E-17 7.3E-22 138.4 8.6 98 26-129 118-224 (374)
20 PRK14300 chaperone protein Dna 99.7 4.2E-17 9E-22 137.8 8.9 94 26-129 120-222 (372)
21 PTZ00037 DnaJ_C chaperone prot 99.7 4E-17 8.7E-22 140.0 8.7 96 26-127 125-230 (421)
22 PRK10767 chaperone protein Dna 99.7 4.4E-17 9.5E-22 137.5 8.8 93 26-128 117-218 (371)
23 PRK14283 chaperone protein Dna 99.7 3.4E-17 7.3E-22 138.6 7.8 99 26-130 121-228 (378)
24 PRK14301 chaperone protein Dna 99.7 3.2E-17 6.9E-22 138.6 7.4 94 26-129 119-221 (373)
25 PRK14288 chaperone protein Dna 99.7 5.3E-17 1.1E-21 137.1 8.1 94 26-129 115-216 (369)
26 PRK14294 chaperone protein Dna 99.7 7.2E-17 1.6E-21 136.1 8.5 92 26-127 119-219 (366)
27 PRK14290 chaperone protein Dna 99.7 1.2E-16 2.7E-21 134.6 9.3 95 26-128 124-228 (365)
28 PRK14291 chaperone protein Dna 99.7 9.7E-17 2.1E-21 136.0 8.6 94 26-129 131-232 (382)
29 PRK14292 chaperone protein Dna 99.7 2E-16 4.2E-21 133.5 8.3 97 26-128 114-220 (371)
30 KOG0712 Molecular chaperone (D 99.5 8.7E-15 1.9E-19 121.9 5.1 102 24-131 100-212 (337)
31 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.5 3.4E-14 7.4E-19 92.9 6.0 56 60-115 1-66 (66)
32 PLN03165 chaperone protein dna 99.4 1.4E-12 3E-17 93.5 7.2 63 54-119 38-100 (111)
33 KOG2813 Predicted molecular ch 98.6 3E-08 6.6E-13 82.3 3.8 87 45-131 172-282 (406)
34 COG0484 DnaJ DnaJ-class molecu 98.6 5.8E-08 1.3E-12 82.3 4.7 76 15-106 121-209 (371)
35 KOG0715 Molecular chaperone (D 98.3 1.2E-07 2.6E-12 78.1 0.9 98 26-133 139-245 (288)
36 COG1107 Archaea-specific RecJ- 98.3 6.7E-07 1.4E-11 79.3 4.2 64 58-121 3-84 (715)
37 PRK14278 chaperone protein Dna 98.1 4.3E-06 9.3E-11 71.1 5.8 75 16-106 119-208 (378)
38 PRK14279 chaperone protein Dna 98.1 4.1E-06 8.9E-11 71.6 5.6 74 17-106 154-238 (392)
39 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.1 2.4E-06 5.2E-11 55.6 3.1 38 56-104 14-66 (66)
40 PRK14288 chaperone protein Dna 98.1 4.5E-06 9.9E-11 70.8 5.3 73 17-106 121-204 (369)
41 PRK14280 chaperone protein Dna 98.1 6.8E-06 1.5E-10 69.8 6.1 74 17-106 124-212 (376)
42 PRK14282 chaperone protein Dna 98.1 5.6E-06 1.2E-10 70.1 5.5 74 17-106 133-221 (369)
43 PRK14296 chaperone protein Dna 98.1 6E-06 1.3E-10 70.1 5.6 75 16-106 129-218 (372)
44 PRK14298 chaperone protein Dna 98.1 5.3E-06 1.2E-10 70.5 5.2 75 16-106 121-210 (377)
45 PRK14301 chaperone protein Dna 98.1 6.1E-06 1.3E-10 70.1 5.4 74 17-106 125-209 (373)
46 PRK14300 chaperone protein Dna 98.1 6.3E-06 1.4E-10 69.9 5.5 74 17-106 126-210 (372)
47 PRK14286 chaperone protein Dna 98.1 6.6E-06 1.4E-10 69.8 5.6 75 16-106 130-215 (372)
48 PRK14295 chaperone protein Dna 98.0 7.9E-06 1.7E-10 69.8 5.8 75 16-106 146-231 (389)
49 PRK14284 chaperone protein Dna 98.0 7E-06 1.5E-10 70.1 5.4 75 16-106 138-223 (391)
50 PRK14281 chaperone protein Dna 98.0 6.4E-06 1.4E-10 70.5 5.1 73 17-106 144-231 (397)
51 PRK14285 chaperone protein Dna 98.0 7.2E-06 1.6E-10 69.5 5.1 75 16-106 126-211 (365)
52 PRK14290 chaperone protein Dna 98.0 7.9E-06 1.7E-10 69.1 5.3 74 16-106 129-217 (365)
53 PRK14294 chaperone protein Dna 98.0 9.7E-06 2.1E-10 68.6 5.8 75 16-106 124-209 (366)
54 PRK14289 chaperone protein Dna 98.0 8E-06 1.7E-10 69.5 5.1 73 18-106 136-223 (386)
55 PRK14277 chaperone protein Dna 98.0 1.3E-05 2.9E-10 68.3 5.6 74 17-106 136-224 (386)
56 PRK14276 chaperone protein Dna 98.0 1.1E-05 2.4E-10 68.6 5.1 75 16-106 126-215 (380)
57 PRK10767 chaperone protein Dna 97.9 1.4E-05 3.1E-10 67.6 5.5 74 17-106 123-207 (371)
58 PRK14297 chaperone protein Dna 97.9 1.7E-05 3.7E-10 67.5 5.9 75 16-106 128-217 (380)
59 TIGR02349 DnaJ_bact chaperone 97.9 1.6E-05 3.5E-10 66.9 5.5 74 17-106 124-212 (354)
60 PTZ00037 DnaJ_C chaperone prot 97.9 1.4E-05 2.9E-10 69.1 5.1 81 11-106 123-220 (421)
61 PRK14287 chaperone protein Dna 97.9 1.5E-05 3.2E-10 67.7 5.1 74 17-106 119-207 (371)
62 PRK14292 chaperone protein Dna 97.9 1.8E-05 3.9E-10 67.0 5.2 75 17-106 120-209 (371)
63 PRK14293 chaperone protein Dna 97.8 2.9E-05 6.4E-10 65.9 5.1 74 17-106 124-212 (374)
64 PRK14283 chaperone protein Dna 97.8 3.5E-05 7.6E-10 65.5 5.0 74 17-106 127-215 (378)
65 PRK14291 chaperone protein Dna 97.7 5.2E-05 1.1E-09 64.6 5.7 73 17-106 137-220 (382)
66 TIGR02642 phage_xxxx uncharact 97.6 8.2E-05 1.8E-09 57.9 4.6 38 94-131 99-141 (186)
67 COG1107 Archaea-specific RecJ- 97.4 0.00012 2.6E-09 65.3 3.5 45 56-111 17-86 (715)
68 PLN03165 chaperone protein dna 97.0 0.0008 1.7E-08 48.3 3.6 33 59-106 54-98 (111)
69 TIGR02642 phage_xxxx uncharact 96.7 0.00099 2.1E-08 51.9 2.3 25 57-81 99-128 (186)
70 KOG0712 Molecular chaperone (D 96.6 0.0013 2.9E-08 55.4 2.3 81 11-106 100-198 (337)
71 KOG2813 Predicted molecular ch 96.4 0.0015 3.1E-08 54.9 1.2 34 69-106 235-268 (406)
72 KOG2824 Glutaredoxin-related p 96.1 0.011 2.3E-07 48.6 5.0 53 56-112 228-280 (281)
73 cd03031 GRX_GRX_like Glutaredo 94.2 0.07 1.5E-06 40.0 3.9 27 57-83 99-125 (147)
74 cd03031 GRX_GRX_like Glutaredo 91.1 0.23 5E-06 37.2 3.1 24 95-118 100-123 (147)
75 KOG0715 Molecular chaperone (D 90.4 0.16 3.5E-06 41.9 1.7 73 18-106 146-229 (288)
76 TIGR00630 uvra excinuclease AB 90.2 0.079 1.7E-06 50.2 -0.3 32 95-126 737-780 (924)
77 KOG2824 Glutaredoxin-related p 89.2 0.43 9.4E-06 39.3 3.4 23 97-119 243-276 (281)
78 TIGR00630 uvra excinuclease AB 89.1 0.33 7.1E-06 46.1 3.0 33 70-106 738-771 (924)
79 COG0178 UvrA Excinuclease ATPa 88.1 0.32 6.9E-06 45.7 2.1 36 95-130 731-778 (935)
80 PRK00349 uvrA excinuclease ABC 87.6 0.37 8.1E-06 45.9 2.3 37 95-131 739-787 (943)
81 PRK00349 uvrA excinuclease ABC 84.0 0.85 1.8E-05 43.5 2.8 33 70-106 740-773 (943)
82 PRK00635 excinuclease ABC subu 83.0 0.27 5.9E-06 49.6 -0.9 33 94-126 1607-1651(1809)
83 PF07092 DUF1356: Protein of u 81.2 0.58 1.3E-05 37.8 0.5 23 96-118 29-51 (238)
84 PRK00635 excinuclease ABC subu 81.1 1.2 2.5E-05 45.3 2.6 33 70-106 1609-1642(1809)
85 PF07092 DUF1356: Protein of u 75.5 1.1 2.3E-05 36.3 0.4 27 58-84 28-54 (238)
86 PF13719 zinc_ribbon_5: zinc-r 74.2 2.8 6.1E-05 23.9 1.9 11 70-80 4-14 (37)
87 TIGR03655 anti_R_Lar restricti 73.1 4.6 9.9E-05 24.7 2.8 14 69-82 2-15 (53)
88 COG0178 UvrA Excinuclease ATPa 72.3 3.5 7.5E-05 39.1 3.0 33 69-105 731-764 (935)
89 TIGR03835 termin_org_DnaJ term 69.9 1.9 4.1E-05 40.5 0.7 51 4-60 636-686 (871)
90 PF13901 DUF4206: Domain of un 67.6 2.2 4.8E-05 33.3 0.6 48 57-112 142-196 (202)
91 PRK04023 DNA polymerase II lar 67.1 3 6.5E-05 40.2 1.4 58 56-126 625-684 (1121)
92 PRK14890 putative Zn-ribbon RN 65.4 6.6 0.00014 25.1 2.3 41 57-112 7-55 (59)
93 COG1198 PriA Primosomal protei 61.8 7.7 0.00017 36.2 3.0 49 56-114 434-484 (730)
94 PF14354 Lar_restr_allev: Rest 61.2 9.3 0.0002 23.6 2.5 15 69-84 4-18 (61)
95 PF03833 PolC_DP2: DNA polymer 61.2 2.7 5.9E-05 39.7 0.0 58 56-126 654-713 (900)
96 PF15616 TerY-C: TerY-C metal 61.1 19 0.00041 26.5 4.4 18 102-119 102-119 (131)
97 TIGR00595 priA primosomal prot 60.9 8.3 0.00018 34.2 3.0 50 56-115 212-263 (505)
98 PRK05978 hypothetical protein; 58.8 5.1 0.00011 30.1 1.1 25 70-101 35-59 (148)
99 PF13717 zinc_ribbon_4: zinc-r 57.2 8.6 0.00019 21.8 1.7 7 70-76 4-10 (36)
100 TIGR00310 ZPR1_znf ZPR1 zinc f 57.1 14 0.00031 28.8 3.4 57 70-132 2-63 (192)
101 PF03589 Antiterm: Antitermina 56.7 3 6.4E-05 29.0 -0.4 13 69-81 6-18 (95)
102 TIGR00340 zpr1_rel ZPR1-relate 56.3 15 0.00033 27.9 3.4 56 71-132 1-61 (163)
103 PRK14714 DNA polymerase II lar 55.7 6.6 0.00014 38.7 1.5 57 57-126 667-730 (1337)
104 TIGR02098 MJ0042_CXXC MJ0042 f 54.5 15 0.00032 20.6 2.3 8 70-77 4-11 (38)
105 PF14353 CpXC: CpXC protein 52.8 13 0.00027 26.6 2.3 38 69-106 2-50 (128)
106 smart00709 Zpr1 Duplicated dom 52.4 21 0.00044 27.1 3.5 37 70-106 2-41 (160)
107 PF07754 DUF1610: Domain of un 52.1 11 0.00025 19.7 1.4 6 95-100 17-22 (24)
108 PF08273 Prim_Zn_Ribbon: Zinc- 51.8 8.2 0.00018 22.6 1.0 13 69-81 4-16 (40)
109 PF07295 DUF1451: Protein of u 51.2 15 0.00032 27.5 2.5 12 107-118 132-143 (146)
110 PF03367 zf-ZPR1: ZPR1 zinc-fi 51.2 22 0.00049 26.8 3.6 37 69-106 2-42 (161)
111 PF08792 A2L_zn_ribbon: A2L zi 49.5 23 0.00049 19.8 2.5 12 70-81 5-16 (33)
112 PRK05580 primosome assembly pr 48.5 18 0.00039 33.3 3.1 49 57-115 381-431 (679)
113 PRK14873 primosome assembly pr 47.3 20 0.00042 33.1 3.2 50 56-115 382-432 (665)
114 PF13453 zf-TFIIB: Transcripti 46.6 15 0.00032 21.1 1.6 6 71-76 2-7 (41)
115 PRK11032 hypothetical protein; 44.0 26 0.00055 26.7 2.9 12 107-118 144-155 (160)
116 PF01155 HypA: Hydrogenase exp 42.9 19 0.00041 25.4 1.9 35 45-79 57-97 (113)
117 PRK12380 hydrogenase nickel in 42.5 26 0.00057 24.8 2.6 20 45-64 57-77 (113)
118 TIGR00100 hypA hydrogenase nic 41.5 31 0.00066 24.5 2.8 19 45-63 57-76 (115)
119 COG2888 Predicted Zn-ribbon RN 40.9 25 0.00055 22.5 2.1 17 96-112 40-57 (61)
120 PRK00488 pheS phenylalanyl-tRN 39.0 29 0.00063 29.5 2.8 22 58-82 261-282 (339)
121 PF14205 Cys_rich_KTR: Cystein 38.2 89 0.0019 19.6 4.2 14 69-82 5-18 (55)
122 smart00778 Prim_Zn_Ribbon Zinc 37.2 25 0.00054 20.2 1.5 13 69-81 4-16 (37)
123 PRK00464 nrdR transcriptional 36.7 40 0.00087 25.4 2.9 34 70-103 2-37 (154)
124 PF10080 DUF2318: Predicted me 35.7 27 0.00059 24.5 1.8 15 69-83 36-50 (102)
125 PF00098 zf-CCHC: Zinc knuckle 34.0 18 0.0004 17.3 0.5 10 97-106 3-12 (18)
126 PRK10266 curved DNA-binding pr 33.7 28 0.00061 28.7 1.9 26 26-57 119-144 (306)
127 PF09862 DUF2089: Protein of u 33.3 34 0.00073 24.6 2.0 16 97-112 1-19 (113)
128 TIGR00757 RNaseEG ribonuclease 32.1 22 0.00048 30.9 1.0 13 94-106 390-402 (414)
129 PF07191 zinc-ribbons_6: zinc- 29.8 86 0.0019 20.7 3.3 21 94-114 30-59 (70)
130 PF08271 TF_Zn_Ribbon: TFIIB z 28.5 43 0.00093 19.3 1.5 9 70-78 2-10 (43)
131 TIGR00595 priA primosomal prot 28.2 44 0.00096 29.6 2.2 38 53-103 218-262 (505)
132 smart00440 ZnF_C2C2 C2C2 Zinc 28.1 1.1E+02 0.0024 17.5 3.2 15 70-84 2-16 (40)
133 PRK03564 formate dehydrogenase 28.1 67 0.0015 27.0 3.2 10 107-116 254-263 (309)
134 COG5082 AIR1 Arginine methyltr 27.5 65 0.0014 25.3 2.8 46 54-106 57-109 (190)
135 PF14599 zinc_ribbon_6: Zinc-r 27.5 40 0.00086 21.5 1.3 12 69-80 31-42 (61)
136 COG3809 Uncharacterized protei 27.3 42 0.00092 22.8 1.5 7 70-76 3-9 (88)
137 PF05180 zf-DNL: DNL zinc fing 27.3 37 0.00081 22.1 1.2 7 107-113 31-37 (66)
138 KOG1705 Uncharacterized conser 27.2 16 0.00035 25.5 -0.6 53 56-112 19-76 (110)
139 PF01096 TFIIS_C: Transcriptio 26.8 97 0.0021 17.6 2.8 16 70-85 2-17 (39)
140 PRK09710 lar restriction allev 26.7 63 0.0014 20.9 2.2 13 69-81 7-19 (64)
141 PF13248 zf-ribbon_3: zinc-rib 26.4 29 0.00063 18.0 0.5 8 95-102 3-10 (26)
142 PTZ00368 universal minicircle 26.3 53 0.0012 23.9 2.1 40 70-110 79-121 (148)
143 PF09723 Zn-ribbon_8: Zinc rib 26.1 74 0.0016 18.3 2.3 28 70-102 7-34 (42)
144 COG5216 Uncharacterized conser 25.5 47 0.001 21.4 1.4 15 30-50 30-44 (67)
145 PF03811 Zn_Tnp_IS1: InsA N-te 25.3 78 0.0017 18.0 2.2 12 69-80 6-17 (36)
146 PRK14892 putative transcriptio 24.9 51 0.0011 23.1 1.6 10 102-111 39-48 (99)
147 PRK14559 putative protein seri 24.7 48 0.001 30.6 1.8 42 58-113 2-49 (645)
148 PF14803 Nudix_N_2: Nudix N-te 24.7 65 0.0014 18.1 1.7 27 71-101 3-29 (34)
149 PRK14299 chaperone protein Dna 23.8 41 0.00088 27.6 1.1 24 26-55 131-154 (291)
150 PF12387 Peptidase_C74: Pestiv 23.5 25 0.00053 27.4 -0.2 23 58-80 163-187 (200)
151 PF09297 zf-NADH-PPase: NADH p 23.2 51 0.0011 17.8 1.1 6 95-100 22-27 (32)
152 PRK00564 hypA hydrogenase nick 23.2 1E+02 0.0022 21.9 3.0 19 46-64 59-78 (117)
153 PRK00420 hypothetical protein; 23.2 60 0.0013 23.2 1.8 18 95-112 24-47 (112)
154 TIGR03831 YgiT_finger YgiT-typ 23.0 1.2E+02 0.0025 17.0 2.8 20 108-127 1-20 (46)
155 PF04438 zf-HIT: HIT zinc fing 22.9 54 0.0012 17.8 1.2 16 96-111 4-19 (30)
156 PF08646 Rep_fac-A_C: Replicat 22.6 73 0.0016 23.0 2.2 29 105-133 37-66 (146)
157 COG4416 Com Mu-like prophage p 22.6 39 0.00084 21.3 0.6 19 94-112 4-31 (60)
158 COG4643 Uncharacterized protei 22.4 42 0.0009 28.8 0.9 34 70-118 34-68 (366)
159 TIGR02605 CxxC_CxxC_SSSS putat 22.0 1.5E+02 0.0033 17.3 3.2 7 70-76 7-13 (52)
160 COG1198 PriA Primosomal protei 21.9 66 0.0014 30.2 2.2 37 54-103 441-484 (730)
161 PRK11712 ribonuclease G; Provi 21.7 55 0.0012 29.2 1.6 14 93-106 401-414 (489)
162 cd04476 RPA1_DBD_C RPA1_DBD_C: 21.3 1.4E+02 0.0029 22.0 3.5 27 107-133 53-80 (166)
163 PF04246 RseC_MucC: Positive r 21.2 1.1E+02 0.0023 21.9 2.8 24 44-67 3-26 (135)
164 PRK05580 primosome assembly pr 20.0 79 0.0017 29.1 2.3 37 54-103 387-430 (679)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.4e-20 Score=158.11 Aligned_cols=96 Identities=25% Similarity=0.512 Sum_probs=90.0
Q ss_pred ccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCC
Q 032147 25 KSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCK 98 (146)
Q Consensus 25 ~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~ 98 (146)
.|+.+.|+|+|+| +|.|.+++|.+++...|+.|+|+|+ .+|+.|+|+|++...+++ |+|+++++|+
T Consensus 116 ~Dl~~~l~isleE------a~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~ 187 (371)
T COG0484 116 ADLRYNLEITLEE------AVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCP 187 (371)
T ss_pred CceEEEEEeEhhh------hccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECC
Confidence 4568999999999 9999999999999999999999987 799999999999988877 8889999999
Q ss_pred CCCCccEE---eCCCCCCeeEEEeeEEEEEEeC
Q 032147 99 TCSGGGLI---YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 99 ~C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
+|+|+|++ +|++|+|.|++++.+.++|+..
T Consensus 188 ~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IP 220 (371)
T COG0484 188 TCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIP 220 (371)
T ss_pred CCccceeECCCCCCCCCCCCeEeeeeEEEEECC
Confidence 99999999 9999999999999999999954
No 2
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=7.8e-19 Score=148.08 Aligned_cols=98 Identities=22% Similarity=0.444 Sum_probs=91.8
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++.+++.+.+.|+.|+|+|+ .+|+.|+|+|.+...+++++|+++++++|+.
T Consensus 127 di~~~l~~slee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~ 200 (369)
T PRK14282 127 DIRYEIEVTLSD------LINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCER 200 (369)
T ss_pred CeEEEEEEEHHH------hcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCC
Confidence 567899999999 9999999999999999999999996 6899999999999999999999998999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|+|+|++ +|+.|+|.|++.+.++++|.+..
T Consensus 201 C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 233 (369)
T PRK14282 201 CGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPA 233 (369)
T ss_pred CCCcceeCCCCCCCCCCceeEEEEEEEEEEeCC
Confidence 9999998 99999999999999999998553
No 3
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=2.2e-18 Score=145.90 Aligned_cols=98 Identities=24% Similarity=0.499 Sum_probs=91.1
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|+++.+.+.+.+.|+.|+|+|. .+|+.|+|+|.+...+++++|+++++++|+.
T Consensus 114 d~~~~l~vtLee------~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 187 (378)
T PRK14278 114 DSLLRMRLDLEE------CATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPT 187 (378)
T ss_pred CeEEEEEEEHHH------hcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCC
Confidence 467889999999 9999999999999999999999996 7899999999999888888899988999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|+|+|++ +|+.|+|.|++.+.+.++|.+..
T Consensus 188 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 220 (378)
T PRK14278 188 CRGVGEVIPDPCHECAGDGRVRARREITVKIPA 220 (378)
T ss_pred CCccceeeCCCCCCCCCceeEecceEEEEEECC
Confidence 9999998 99999999999999999998544
No 4
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=2.4e-18 Score=145.63 Aligned_cols=97 Identities=25% Similarity=0.418 Sum_probs=90.6
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|. .+|+.|+|+|.+...+++++|+++.+++|+.
T Consensus 121 di~~~l~vtLee------~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~ 194 (380)
T PRK14276 121 DLQYRVNLDFEE------AIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDV 194 (380)
T ss_pred CEEEEEEEEHHH------hcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCC
Confidence 467889999999 9999999999999999999999996 6899999999999998999999988999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
|.|+|++ +|+.|+|.|++.+.+.++|...
T Consensus 195 C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip 226 (380)
T PRK14276 195 CHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIP 226 (380)
T ss_pred CCCCCccccCCCCCCCCceEEEEEEEEEEEeC
Confidence 9999998 9999999999999999988854
No 5
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=2.5e-18 Score=145.39 Aligned_cols=97 Identities=25% Similarity=0.468 Sum_probs=90.6
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|+++.+.+.+.+.|+.|+|+|. .+|+.|+|+|.+...+++++|+++++++|+.
T Consensus 118 di~~~l~vtLee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 191 (376)
T PRK14280 118 DLQYTMTLTFEE------AVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPH 191 (376)
T ss_pred CEEEEEEEEHHH------HhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCC
Confidence 567899999999 9999999999999999999999995 6899999999999888889999988999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
|+|+|++ +|+.|+|.|++.+.+.++|...
T Consensus 192 C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip 223 (376)
T PRK14280 192 CNGTGQEIKEKCPTCHGKGKVRKRKKINVKIP 223 (376)
T ss_pred CCCCCceecCCCCCCCCceEEEEEEEEEEEeC
Confidence 9999998 9999999999999999998844
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2e-18 Score=146.07 Aligned_cols=98 Identities=28% Similarity=0.460 Sum_probs=90.4
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.|..|+|+|. .+|+.|+|+|.+...++.++|+++++++|+.
T Consensus 116 di~~~l~vslee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 189 (377)
T PRK14298 116 DLRYDLYITLEE------AAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCST 189 (377)
T ss_pred CEEEEEEEEHHH------hhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCC
Confidence 567899999999 9999999999999999999999996 7899999999999888877777889999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|+|+|++ +|+.|+|.|++.+.++++|....
T Consensus 190 C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ipp 222 (377)
T PRK14298 190 CHGRGQVIESPCPVCSGTGKVRKTRKITVNVPA 222 (377)
T ss_pred CCCCCcccCCCCCCCCCccEEEEEEEEEecCCC
Confidence 9999998 99999999999999999998443
No 7
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.75 E-value=2.7e-18 Score=143.84 Aligned_cols=98 Identities=28% Similarity=0.482 Sum_probs=91.8
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.++|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|. .+|+.|+|+|.+....++++|+++++++|+.
T Consensus 118 d~~~~l~vsLee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 191 (354)
T TIGR02349 118 DLRYDLELTFEE------AVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPT 191 (354)
T ss_pred CeEEEEEEEHHH------HhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCC
Confidence 567999999999 9999999999999999999999995 6899999999999999999999988999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|.|+|++ +|+.|+|.|++.+.+.++|++..
T Consensus 192 C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 224 (354)
T TIGR02349 192 CGGEGKIIKEPCSTCKGKGRVKERKTITVKIPA 224 (354)
T ss_pred CCCcceecCCCCCCCCCCcEecccceEEEEECC
Confidence 9999998 99999999999999999998543
No 8
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=4.7e-18 Score=143.59 Aligned_cols=98 Identities=26% Similarity=0.442 Sum_probs=88.6
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.|..|+|+|. .+|+.|+|+|.+...++.++.+++++++|+.
T Consensus 124 di~~~l~ltlee------~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~ 197 (372)
T PRK14296 124 SVSLDIYLTFKE------LLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNV 197 (372)
T ss_pred CeEEEeeccHHH------hhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCC
Confidence 567899999999 9999999999999999999999996 6899999999999888776644577899999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|+|+|++ +|+.|+|.|++.+.++++|.+..
T Consensus 198 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 230 (372)
T PRK14296 198 CNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPK 230 (372)
T ss_pred cCCcceeecccccCCCCceEEEEEEEEEEEECC
Confidence 9999998 99999999999999999998543
No 9
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=4.7e-18 Score=144.13 Aligned_cols=97 Identities=28% Similarity=0.473 Sum_probs=90.5
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++++.+.+.+.|+.|+|+|. .+|+.|+|+|.+...+++++|+++..++|+.
T Consensus 130 di~~~l~vtLee------~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~ 203 (386)
T PRK14277 130 DIRYDLELTFEE------AAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDR 203 (386)
T ss_pred CEEEEEEEEHHH------HhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCC
Confidence 467899999999 9999999999999999999999996 7899999999999999999999988899999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
|.|+|++ +|+.|+|.|++.+.+.++|...
T Consensus 204 C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 235 (386)
T PRK14277 204 CHGEGKIITDPCNKCGGTGRIRRRRKIKVNIP 235 (386)
T ss_pred CCcceeeccCCCCCCCCCcEEeeeeEEEEecC
Confidence 9999998 9999999999999999998854
No 10
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=6.9e-18 Score=142.84 Aligned_cols=97 Identities=25% Similarity=0.468 Sum_probs=91.2
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.++|.|+|+| +|+|.++++.+.+.+.|+.|+|+|. .+|+.|+|+|++...++.++|+++++.+|+.
T Consensus 123 di~~~l~vsLee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~ 196 (380)
T PRK14297 123 DIEYTINLTFEE------AVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDK 196 (380)
T ss_pred CEEEEEEEEHHH------hcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCC
Confidence 577899999999 9999999999999999999999996 6899999999999888888999999999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
|+|+|.+ +|..|+|.|++++.+.++|.+.
T Consensus 197 C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip 228 (380)
T PRK14297 197 CGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVP 228 (380)
T ss_pred CCCCceEcCCCCCCCCCCeEEEeEeEEEEEeC
Confidence 9999998 9999999999999999999965
No 11
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=5.6e-18 Score=144.17 Aligned_cols=98 Identities=27% Similarity=0.519 Sum_probs=91.2
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----eEcCCCCCccEEEEEeeeCCCCcccceeCCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTC 100 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 100 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|. .+|+.|+|+|.+....++++|+++++++|+.|
T Consensus 138 di~~~l~vtLee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 211 (397)
T PRK14281 138 DLKIRLKLTLEE------IAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTC 211 (397)
T ss_pred CEEEEEEeEHHH------HhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCC
Confidence 567899999999 9999999999999999999999996 68999999999998888999999889999999
Q ss_pred CCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 101 SGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 101 ~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
.|+|++ +|+.|+|.|++.+.++++|++..
T Consensus 212 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 243 (397)
T PRK14281 212 GGEGRVVKDRCPACYGEGIKQGEVTVKVTVPA 243 (397)
T ss_pred cceeeeeCCCCCCCCCCccEecceEEEEecCC
Confidence 999998 99999999999999999988543
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=8.1e-18 Score=142.11 Aligned_cols=97 Identities=27% Similarity=0.487 Sum_probs=90.7
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.++|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|. .+|+.|+|+|++...+++++|+++.+++|+.
T Consensus 113 d~~~~l~vslee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~ 186 (371)
T PRK14287 113 DLQYTMTLEFKE------AVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHH 186 (371)
T ss_pred CEEEEEEEEHHH------hcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCC
Confidence 567899999999 9999999999999999999999995 6899999999999999999999988999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
|.|+|++ +|..|+|.|++.+.+.++|.+.
T Consensus 187 C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 218 (371)
T PRK14287 187 CEGTGKIIKQKCATCGGKGKVRKRKKINVKVP 218 (371)
T ss_pred CCCCCccccccCCCCCCeeEEeeeEEEEEEEC
Confidence 9999998 9999999999999888988854
No 13
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=1.2e-17 Score=141.67 Aligned_cols=98 Identities=30% Similarity=0.510 Sum_probs=91.6
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++++.|.|+|+| +|+|.++.+.+.+.+.|..|+|+|. ..|+.|+|+|.+....++++|+++.+.+|+.
T Consensus 129 di~~~l~vsLee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~ 202 (386)
T PRK14289 129 DLRVKVKLNLKE------ISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPT 202 (386)
T ss_pred CeEEEEEEEHHH------hhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCC
Confidence 567899999999 9999999999999999999999996 7899999999999999999999988999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|.|+|++ +|+.|+|.|++.+.+.++|++..
T Consensus 203 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 235 (386)
T PRK14289 203 CNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPA 235 (386)
T ss_pred CCccccccCcCCCCCCCCcEEeeeEEEEEEeCC
Confidence 9999998 99999999999999999998544
No 14
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.5e-17 Score=141.36 Aligned_cols=94 Identities=26% Similarity=0.515 Sum_probs=85.9
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|+ .+|+.|+|+|++.... |+++++++|+.
T Consensus 148 di~~~l~ltLee------~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~ 217 (392)
T PRK14279 148 DLETETTLDFVE------AAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTD 217 (392)
T ss_pred CeEEEEEEEHHH------HhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCC
Confidence 577899999999 9999999999999999999999996 7899999999987664 66788899999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|+|+|++ +|+.|+|.|++.+.+.++|.+..
T Consensus 218 C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~ 250 (392)
T PRK14279 218 CRGTGSIIEDPCEECKGTGVTTRTRTINVRIPP 250 (392)
T ss_pred CCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCC
Confidence 9999998 99999999999999999988543
No 15
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.7e-17 Score=140.23 Aligned_cols=94 Identities=21% Similarity=0.411 Sum_probs=85.9
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.++|+|+|+| +|+|.++.+.+.+.+.|..|+|+|. .+|+.|+|+|.+.... |+++++++|+.
T Consensus 125 di~~~l~vtLee------~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~ 194 (372)
T PRK14286 125 DLRYNLEVSLED------AALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPT 194 (372)
T ss_pred CeeEEEEEEHHH------HhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCC
Confidence 567889999999 9999999999999999999999996 7899999999987654 77888999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|.|+|++ +|+.|+|.|++.+.+.++|....
T Consensus 195 C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 227 (372)
T PRK14286 195 CRGKGTVISNPCKTCGGQGLQEKRRTINIKIPP 227 (372)
T ss_pred CCceeeEecccCCCCCCCcEEecceEEEEEECC
Confidence 9999998 99999999999999999988544
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=2.4e-17 Score=139.99 Aligned_cols=93 Identities=27% Similarity=0.494 Sum_probs=85.3
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++.+.+.+...|+.|+|+|+ .+|+.|+|+|.+.... |+++++++|+.
T Consensus 133 d~~~~l~vslee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~ 202 (391)
T PRK14284 133 SKKVHITLSFEE------AAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPE 202 (391)
T ss_pred CeEEEEEEEHHH------HhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCC
Confidence 467899999999 9999999999999999999999996 7899999999988654 77888999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
|+|+|++ +|+.|+|.|++++.++++|++.
T Consensus 203 C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 234 (391)
T PRK14284 203 CGGEGRVITDPCSVCRGQGRIKDKRSVHVHIP 234 (391)
T ss_pred CCCCCcccCCcCCCCCCcceecceEEEEEEEC
Confidence 9999998 9999999999999999999843
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=2.4e-17 Score=139.02 Aligned_cols=94 Identities=19% Similarity=0.327 Sum_probs=85.5
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.++|.|+|+| +|+|.++.+.+.+.+.|..|+|+|. .+|+.|+|+|++.. .+|+++++++|+.
T Consensus 121 di~~~l~vtlee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~ 190 (365)
T PRK14285 121 DLTYQIEISLED------AYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPK 190 (365)
T ss_pred CEEEEEEEEHHH------hhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCC
Confidence 467889999999 9999999999999999999999996 68999999999875 3478888999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|.|+|++ +|+.|+|.|++.+.+.++|++..
T Consensus 191 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 223 (365)
T PRK14285 191 CYGNGKIISNPCKSCKGKGSLKKKETIELKIPA 223 (365)
T ss_pred CCCcccccCCCCCCCCCCCEEeccEEEEEEECC
Confidence 9999998 99999999999999999998544
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.3e-17 Score=139.21 Aligned_cols=94 Identities=27% Similarity=0.522 Sum_probs=85.6
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.++|.|+|+| +|+|.+++|++.+.+.|..|+|+|. .+|+.|+|+|.+.... |+|+++++|+.
T Consensus 141 di~~~l~lsLee------~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~ 210 (389)
T PRK14295 141 DVESEVTLSFTE------AIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPD 210 (389)
T ss_pred CEEEEEEEEHHH------HhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCC
Confidence 567899999999 9999999999999999999999996 7899999999988664 66788899999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|+|+|++ +|+.|+|.|++.+.+.++|.+..
T Consensus 211 C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 243 (389)
T PRK14295 211 CKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA 243 (389)
T ss_pred CcceeEEeccCCCCCCCCceEeeeeEEEEEeCC
Confidence 9999998 99999999999999999998543
No 19
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.3e-17 Score=138.40 Aligned_cols=98 Identities=23% Similarity=0.425 Sum_probs=90.7
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.|..|+|+|. .+|+.|+|+|.+....++++|+++++.+|+.
T Consensus 118 di~~~l~vsLee------~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 191 (374)
T PRK14293 118 DLRYDLKLDFRE------AIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPT 191 (374)
T ss_pred CeEEEEEeeHHH------HhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCC
Confidence 467889999999 9999999999999999999999996 6899999999999988899999988899999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|.|.|++ +|+.|+|.|++.+.+.++|.+..
T Consensus 192 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ipp 224 (374)
T PRK14293 192 CNGTGQVIEDPCDACGGQGVKQVTKKLKINIPA 224 (374)
T ss_pred CCcceeEeccCCCCCCCCcccccceEEEEEeCC
Confidence 9999998 99999999999999888888554
No 20
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=4.2e-17 Score=137.79 Aligned_cols=94 Identities=26% Similarity=0.509 Sum_probs=86.0
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|. .+|+.|+|+|.+.... |+++++.+|+.
T Consensus 120 di~~~l~~sLee------~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~ 189 (372)
T PRK14300 120 DLKYNLTINLEE------AFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ----GFFTIEQACHK 189 (372)
T ss_pred CeeEEEEEEHHH------HhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEee----ceEEEEEeCCC
Confidence 577899999999 9999999999999999999999995 7899999999987543 78888899999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|.|+|++ +|+.|+|.|++.+.+.++|.+..
T Consensus 190 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 222 (372)
T PRK14300 190 CQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPA 222 (372)
T ss_pred CCccceEeCCCCCCCCCceEEEeeEEEEEEECC
Confidence 9999998 99999999999999999998553
No 21
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.70 E-value=4e-17 Score=139.98 Aligned_cols=96 Identities=21% Similarity=0.377 Sum_probs=86.2
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----eEcCCCCCccEEEEEeeeCCCCcccceeCCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTC 100 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 100 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|. .+|+.|+|+|.++...++++..++++++|+.|
T Consensus 125 di~~~l~vtLee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C 198 (421)
T PTZ00037 125 DIVSHLKVTLEQ------IYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSC 198 (421)
T ss_pred CEEEEeeeeHHH------HhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCC
Confidence 467889999999 9999999999999999999999996 78999999999887776665233678999999
Q ss_pred CCccEE-----eCCCCCCeeEEEeeEEEEEEe
Q 032147 101 SGGGLI-----YCSRCLGTGEYRYPMGFHFVK 127 (146)
Q Consensus 101 ~G~G~~-----~C~~C~G~G~~~~~~~~~v~~ 127 (146)
+|+|++ +|+.|+|.|++.+.+.++|++
T Consensus 199 ~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~I 230 (421)
T PTZ00037 199 NGQGKIIPESKKCKNCSGKGVKKTRKILEVNI 230 (421)
T ss_pred CCcceeccccccCCcCCCcceeeeeeEEEEee
Confidence 999997 799999999999999999985
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=4.4e-17 Score=137.46 Aligned_cols=93 Identities=24% Similarity=0.459 Sum_probs=85.4
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.++|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|. ..|+.|+|+|.+...+ |+++++++|+.
T Consensus 117 di~~~l~vsLee------~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~ 186 (371)
T PRK10767 117 DLRYNMEITLEE------AVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPT 186 (371)
T ss_pred CeEEEEEeehHH------hhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCC
Confidence 567889999999 9999999999999999999999996 5899999999987654 77788899999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
|+|+|+. +|+.|+|.|++.+.+.++|.+.
T Consensus 187 C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 218 (371)
T PRK10767 187 CHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIP 218 (371)
T ss_pred CCCceeECCCCCCCCCCCceEeeeeeEEEecC
Confidence 9999998 9999999999999999999864
No 23
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.4e-17 Score=138.56 Aligned_cols=99 Identities=24% Similarity=0.457 Sum_probs=92.0
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|. .+|+.|+|+|.+...+++++|+++++.+|+.
T Consensus 121 di~~~l~vsLed------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 194 (378)
T PRK14283 121 DIYTEVEITLEE------AASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPD 194 (378)
T ss_pred CeEEEeeeeHHH------HhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCC
Confidence 567899999999 9999999999999999999999996 6899999999999999999999988899999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKSD 130 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~~ 130 (146)
|.|+|+. +|..|+|.|++.+.+.++|.+...
T Consensus 195 C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG 228 (378)
T PRK14283 195 CQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAG 228 (378)
T ss_pred CCccceecCCCCCCCCCceeeccceeEEEEECCC
Confidence 9999998 999999999999999999997543
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.2e-17 Score=138.58 Aligned_cols=94 Identities=21% Similarity=0.450 Sum_probs=85.6
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++++.+.+.+.|+.|+|+|. .+|+.|+|+|.+.... |+++++++|+.
T Consensus 119 di~~~l~vtLee------~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~ 188 (373)
T PRK14301 119 DLRYNLTVSFRQ------AAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ----GFFQIAVPCPV 188 (373)
T ss_pred CEEEEEeccHHH------HhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe----eeEEEEEeCCC
Confidence 567889999999 9999999999999999999999996 6899999999987543 77888999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|+|+|++ +|+.|+|.|++.+.+.++|.+..
T Consensus 189 C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 221 (373)
T PRK14301 189 CRGEGRVITHPCPKCKGSGIVQQTRELKVRIPA 221 (373)
T ss_pred CCceeeecCCCCCCCCCCceeccceEEEEEeCC
Confidence 9999998 99999999999999999988543
No 25
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=5.3e-17 Score=137.09 Aligned_cols=94 Identities=23% Similarity=0.440 Sum_probs=85.2
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----eEcCCCCCccEEEEEeeeCCCCcccceeCCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTC 100 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 100 (146)
++.+.|.|+|+| +|+|.++.+++.+.+.|..|+|+|. .+|+.|+|+|.+...+ |+++++++|+.|
T Consensus 115 di~~~l~vslee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C 184 (369)
T PRK14288 115 DYLQTIELSFKE------AVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ----GFMSFAQTCGAC 184 (369)
T ss_pred CeeEeccccHHH------HhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe----ceEEEEEecCCC
Confidence 567889999999 9999999999999999999999996 7899999999987654 677888899999
Q ss_pred CCccEE---eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 101 SGGGLI---YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 101 ~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
.|+|++ +|+.|+|.|++.+.+.++|.+..
T Consensus 185 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~ 216 (369)
T PRK14288 185 QGKGKIIKTPCQACKGKTYILKDEEIDAIIPE 216 (369)
T ss_pred CCCceEccccCccCCCcceEEEEEEEEEecCC
Confidence 999998 99999999999999999988543
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=7.2e-17 Score=136.05 Aligned_cols=92 Identities=25% Similarity=0.482 Sum_probs=84.4
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.++|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|. .+|+.|+|+|.+.... |+++++++|+.
T Consensus 119 d~~~~l~lslee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~ 188 (366)
T PRK14294 119 DLRYDLTLPFLE------AAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ----GFFSIRTTCPR 188 (366)
T ss_pred CceEEEEeeHHH------hcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe----eeEEEEeeCCC
Confidence 567889999999 9999999999999999999999996 6899999999987543 77888999999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEe
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVK 127 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~ 127 (146)
|+|+|++ +|+.|+|.|++.+.+.++|..
T Consensus 189 C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 219 (366)
T PRK14294 189 CRGMGKVIVSPCKTCHGQGRVRVSKTVQVKI 219 (366)
T ss_pred CCCcCeecCcCCCCCCCceEeecceeEEEec
Confidence 9999998 999999999999999999884
No 27
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=1.2e-16 Score=134.60 Aligned_cols=95 Identities=25% Similarity=0.414 Sum_probs=85.2
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----eEcCCCCCccEEEEEeeeCCCCc--ccceeCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----VDCYNCSGKGRTNKTHLTMLPRG--EWPKWCK 98 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----~~C~~C~G~G~~~~~~~~~~g~~--~~~~~C~ 98 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.|+.|+|+|. .+|+.|+|+|++...+. +|++ +.+++|+
T Consensus 124 di~~~l~lsLee------~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~ 195 (365)
T PRK14290 124 DIYTNLDISLED------AYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCR 195 (365)
T ss_pred CEEEEEEecHHH------hcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEec--cCeEEEEEEEeCC
Confidence 577889999999 9999999999999999999999996 78999999999877653 4665 4578999
Q ss_pred CCCCccEE---eCCCCCCeeEEEeeEEEEEEeC
Q 032147 99 TCSGGGLI---YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 99 ~C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
.|.|+|++ +|+.|+|.|++.+.+.++|.+.
T Consensus 196 ~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 228 (365)
T PRK14290 196 TCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIP 228 (365)
T ss_pred CCCCceeEccCCCCCCCCceeEEEeeEEEEEEC
Confidence 99999998 9999999999999999999954
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=9.7e-17 Score=135.97 Aligned_cols=94 Identities=22% Similarity=0.387 Sum_probs=85.3
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
++.+.|.|+|+| +|+|.++++.+.+.+.|..|+|+|. .+|+.|+|+|.+.... ++++++++|+.
T Consensus 131 di~~~l~vsLee------~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~ 200 (382)
T PRK14291 131 DIYQTVEISLEE------AYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG----GFFRISQTCPT 200 (382)
T ss_pred CEEEEEEEEHHH------hhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEec----ceEEEEecCCC
Confidence 567899999999 9999999999999999999999995 7899999999987653 66788999999
Q ss_pred CCCccEE--eCCCCCCeeEEEeeEEEEEEeCC
Q 032147 100 CSGGGLI--YCSRCLGTGEYRYPMGFHFVKKS 129 (146)
Q Consensus 100 C~G~G~~--~C~~C~G~G~~~~~~~~~v~~~~ 129 (146)
|+|+|.+ +|+.|+|.|++.+.+.++|.+..
T Consensus 201 C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 232 (382)
T PRK14291 201 CGGEGVLREPCSKCNGRGLVIKKETIKVRIPP 232 (382)
T ss_pred CCCceEEccCCCCCCCCceEEeeeEEEEEeCC
Confidence 9999987 99999999999999999999543
No 29
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=2e-16 Score=133.51 Aligned_cols=97 Identities=21% Similarity=0.373 Sum_probs=90.0
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-------eEcCCCCCccEEEEEeeeCCCCcccceeCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCK 98 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~ 98 (146)
++.+.+.|+|+| +|+|.++.+.+.+...|+.|+|+|. .+|+.|+|+|.+....++++|+++++++|+
T Consensus 114 d~~~~l~~sLee------~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~ 187 (371)
T PRK14292 114 DLETEARITLEQ------ARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCP 187 (371)
T ss_pred CeEEEEeccHHH------HcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecC
Confidence 567889999999 9999999999999999999999995 679999999999988888889988899999
Q ss_pred CCCCccEE---eCCCCCCeeEEEeeEEEEEEeC
Q 032147 99 TCSGGGLI---YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 99 ~C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
.|+|.|+. +|+.|+|.|++...+.++|.+.
T Consensus 188 ~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 220 (371)
T PRK14292 188 TCRGEGQIITDPCTVCRGRGRTLKAETVKVKLP 220 (371)
T ss_pred CCcccceecCCCCCCCCCceEEeecceEEEEEC
Confidence 99999998 9999999999999998998864
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.7e-15 Score=121.91 Aligned_cols=102 Identities=20% Similarity=0.292 Sum_probs=94.4
Q ss_pred cccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----eEcCCCCCccEEEEEeeeCCCCc-ccceeC
Q 032147 24 SKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----VDCYNCSGKGRTNKTHLTMLPRG-EWPKWC 97 (146)
Q Consensus 24 ~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C 97 (146)
..++.++++++|+| +|.|.++++.+++..+|+.|+|+|. ..|+.|.|+|......++++|+. +++..|
T Consensus 100 g~~~~~~~~~~Le~------~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C 173 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEE------LYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVC 173 (337)
T ss_pred CCCceEEEEEEHHH------hhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEe
Confidence 45678999999999 9999999999999999999999996 67999999999999999999998 578999
Q ss_pred CCCCCccEE-----eCCCCCCeeEEEeeEEEEEEeCCCC
Q 032147 98 KTCSGGGLI-----YCSRCLGTGEYRYPMGFHFVKKSDS 131 (146)
Q Consensus 98 ~~C~G~G~~-----~C~~C~G~G~~~~~~~~~v~~~~~~ 131 (146)
..|+|+|.. .|+.|.|++++.+.+.++|++...+
T Consensus 174 ~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~ 212 (337)
T KOG0712|consen 174 DSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGM 212 (337)
T ss_pred ccCCCccccccccccCcccccchhhhhhheeeccccCCC
Confidence 999999997 9999999999999999999976654
No 31
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.51 E-value=3.4e-14 Score=92.86 Aligned_cols=56 Identities=34% Similarity=0.755 Sum_probs=48.1
Q ss_pred CccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE----eCCCCCCee
Q 032147 60 CIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI----YCSRCLGTG 115 (146)
Q Consensus 60 C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~C~~C~G~G 115 (146)
|+.|+|+|+ .+|+.|+|+|++...++.++++++++++|+.|+|+|++ +|+.|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 889999997 89999999999999988777777999999999999999 799999986
No 32
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.38 E-value=1.4e-12 Score=93.48 Aligned_cols=63 Identities=29% Similarity=0.631 Sum_probs=54.6
Q ss_pred eCCcccCccCcCceeeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEEeCCCCCCeeEEEe
Q 032147 54 KKPEPPCIVCHGTGRVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLIYCSRCLGTGEYRY 119 (146)
Q Consensus 54 ~~~~~~C~~C~GsG~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~C~~C~G~G~~~~ 119 (146)
....+.|..|+|+|..+|+.|+|+|++.... .++++.+++|+.|+|+|+.+|+.|+|.|++..
T Consensus 38 ~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~ 100 (111)
T PLN03165 38 RENTQPCFPCSGTGAQVCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSLTCTTCQGSGIQPR 100 (111)
T ss_pred hccCCCCCCCCCCCCcCCCCCcCcCeEEEEe---CCcEEEEEECCCCCCcceeeCCCCCCCEEEee
Confidence 3468999999999999999999999987543 23467789999999999999999999999764
No 33
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3e-08 Score=82.30 Aligned_cols=87 Identities=30% Similarity=0.461 Sum_probs=63.3
Q ss_pred EeCeEEEEEeC---CcccCccCcCceeeEcCCCCCccEEEE--------Ee-------------eeCCCCcccceeCCCC
Q 032147 45 ESNVRKLARKK---PEPPCIVCHGTGRVDCYNCSGKGRTNK--------TH-------------LTMLPRGEWPKWCKTC 100 (146)
Q Consensus 45 ~~G~~~~i~~~---~~~~C~~C~GsG~~~C~~C~G~G~~~~--------~~-------------~~~~g~~~~~~~C~~C 100 (146)
+.|....+.++ -...|..|.|.|...|+.|+|.|.-.. .. .+..+......+|++|
T Consensus 172 f~~~~~~~~vphs~~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC 251 (406)
T KOG2813|consen 172 FSGVAHPAVVPHSMIVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTC 251 (406)
T ss_pred ccccccceeccchHhhhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcc
Confidence 44444444444 357799999999999999999994211 11 1112223456778888
Q ss_pred CCccEEeCCCCCCeeEEEeeEEEEEEeCCCC
Q 032147 101 SGGGLIYCSRCLGTGEYRYPMGFHFVKKSDS 131 (146)
Q Consensus 101 ~G~G~~~C~~C~G~G~~~~~~~~~v~~~~~~ 131 (146)
.|+|.++|.+|.|+|.+.....+-|+|++..
T Consensus 252 ~grG~k~C~TC~gtgsll~~t~~vV~wKn~~ 282 (406)
T KOG2813|consen 252 KGRGKKPCTTCSGTGSLLNYTRIVVYWKNEK 282 (406)
T ss_pred cCCCCcccccccCccceeeeEEEEEEeechh
Confidence 8888889999999999999999999999865
No 34
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.8e-08 Score=82.26 Aligned_cols=76 Identities=18% Similarity=0.407 Sum_probs=61.2
Q ss_pred eeecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-------------eEcCCCCCccEEE
Q 032147 15 VVRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-------------VDCYNCSGKGRTN 81 (146)
Q Consensus 15 ~~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-------------~~C~~C~G~G~~~ 81 (146)
....+|||++.....++.++-...+..| .-+|.+.. .....|+.|+|+|. .+|+.|+|+|.++
T Consensus 121 ~l~isleEa~~G~~~~i~~~~~~~C~~C-~GsGak~g---t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i 196 (371)
T COG0484 121 NLEITLEEAVFGVKKEIRVTRSVTCSTC-HGSGAKPG---TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII 196 (371)
T ss_pred EEEeEhhhhccCceeeEecceeeECCcC-CCCCCCCC---CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC
Confidence 4556899999999999999988855544 22333321 36889999999994 7899999999997
Q ss_pred EEeeeCCCCcccceeCCCCCCccEE
Q 032147 82 KTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 82 ~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|++|+|+|++
T Consensus 197 ------------~~pC~~C~G~G~v 209 (371)
T COG0484 197 ------------KDPCGKCKGKGRV 209 (371)
T ss_pred ------------CCCCCCCCCCCeE
Confidence 6799999999996
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.2e-07 Score=78.06 Aligned_cols=98 Identities=28% Similarity=0.480 Sum_probs=80.7
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
+..+.+.++|++ +..|.++.+.+.....|..|.|.|. ..|..|+|.|....... ..+... +|..
T Consensus 139 ~~~~d~~~~f~~------A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~f~~~-~~~~ 208 (288)
T KOG0715|consen 139 DQYYDLSLDFKE------AVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKE---DPFILY-TCSY 208 (288)
T ss_pred ccccccccCHHH------HhhccccceEEEeecccccccCcCcccccccccchhhhCccccccccc---CCccee-eccc
Confidence 445778899999 9999999999999999999999996 78999999996654332 223233 9999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEEeCCCCCC
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFVKKSDSDS 133 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~~~~~~~~ 133 (146)
|.|.|.+ .|..|.|.|.+...+.+.|.+....++
T Consensus 209 c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~ 245 (288)
T KOG0715|consen 209 CLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRS 245 (288)
T ss_pred ccccceeccchHHHhhcchhhhhheeEEeecCccccc
Confidence 9999999 699999999999888888886665544
No 36
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.29 E-value=6.7e-07 Score=79.31 Aligned_cols=64 Identities=28% Similarity=0.579 Sum_probs=48.7
Q ss_pred ccCccCcCcee-----eEcCCCCCccEEEEEee---------eCCCCcccceeCCCCCCccEE----eCCCCCCeeEEEe
Q 032147 58 PPCIVCHGTGR-----VDCYNCSGKGRTNKTHL---------TMLPRGEWPKWCKTCSGGGLI----YCSRCLGTGEYRY 119 (146)
Q Consensus 58 ~~C~~C~GsG~-----~~C~~C~G~G~~~~~~~---------~~~g~~~~~~~C~~C~G~G~~----~C~~C~G~G~~~~ 119 (146)
..|+.|+|+|+ ..|+.|+|+|++..... ..-+++....+|+.|.|+|++ .|+.|.|+|.+..
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence 57999999997 67999999999843321 001122346799999999998 9999999998765
Q ss_pred eE
Q 032147 120 PM 121 (146)
Q Consensus 120 ~~ 121 (146)
-.
T Consensus 83 c~ 84 (715)
T COG1107 83 CD 84 (715)
T ss_pred ec
Confidence 33
No 37
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.13 E-value=4.3e-06 Score=71.11 Aligned_cols=75 Identities=20% Similarity=0.404 Sum_probs=56.2
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEE
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRT 80 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~ 80 (146)
...++||++.+....+.++....+. ...|.-..- -.....|+.|+|+|. .+|+.|+|+|.+
T Consensus 119 l~vtLee~~~G~~~~i~~~~~~~C~---~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 194 (378)
T PRK14278 119 MRLDLEECATGVTKQVTVDTAVLCD---RCHGKGTAG-DSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEV 194 (378)
T ss_pred EEEEHHHhcCCeEEEEEEEeeccCC---CCcCccCCC-CCCceecCCccCceEEEEEEeccceeEEEEEECCCCCcccee
Confidence 4458999999998888888777433 334432221 123568999999984 579999999998
Q ss_pred EEEeeeCCCCcccceeCCCCCCccEE
Q 032147 81 NKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 81 ~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
+ ..+|+.|.|+|.+
T Consensus 195 ~------------~~~C~~C~G~g~v 208 (378)
T PRK14278 195 I------------PDPCHECAGDGRV 208 (378)
T ss_pred e------------CCCCCCCCCceeE
Confidence 6 4679999999986
No 38
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.13 E-value=4.1e-06 Score=71.59 Aligned_cols=74 Identities=24% Similarity=0.499 Sum_probs=56.6
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEee
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTHL 85 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~~ 85 (146)
..++||++......+.+..... |....|.-... -.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 154 ~ltLee~~~G~~~~v~~~~~~~---C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i---- 225 (392)
T PRK14279 154 TLDFVEAAKGVTMPLRLTSPAP---CTTCHGSGARP-GTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII---- 225 (392)
T ss_pred EEEHHHHhCCeEEEEeeecccc---CCCCccccccC-CCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe----
Confidence 3589999999888888877773 33444443321 124678999999996 5899999999986
Q ss_pred eCCCCcccceeCCCCCCccEE
Q 032147 86 TMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 86 ~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|..|.|+|.+
T Consensus 226 --------~~~C~~C~G~g~v 238 (392)
T PRK14279 226 --------EDPCEECKGTGVT 238 (392)
T ss_pred --------CCcCCCCCCCeEE
Confidence 5679999999987
No 39
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.12 E-value=2.4e-06 Score=55.60 Aligned_cols=38 Identities=37% Similarity=0.913 Sum_probs=29.2
Q ss_pred CcccCccCcCcee---------------eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCcc
Q 032147 56 PEPPCIVCHGTGR---------------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGG 104 (146)
Q Consensus 56 ~~~~C~~C~GsG~---------------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 104 (146)
....|+.|+|+|. .+|+.|+|+|.++ . ..+|+.|+|+|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~----------~~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E----------KDPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T----------SSB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C----------CCCCCCCCCcC
Confidence 5678999999996 7899999999997 2 67899999986
No 40
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.10 E-value=4.5e-06 Score=70.75 Aligned_cols=73 Identities=19% Similarity=0.441 Sum_probs=55.6
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEee
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTHL 85 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~~ 85 (146)
..++||++.+....+++..... |....|.-..- .....|+.|+|+|. .+|+.|+|+|.++
T Consensus 121 ~vslee~~~G~~~~i~~~r~~~---C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~---- 191 (369)
T PRK14288 121 ELSFKEAVFGCKKTIKVQYQSV---CESCDGTGAKD--KALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII---- 191 (369)
T ss_pred cccHHHHhCCeEEEEEEEeecc---CCCCCCcccCC--CCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc----
Confidence 3589999999888888887763 33334433221 24578999999995 5799999999986
Q ss_pred eCCCCcccceeCCCCCCccEE
Q 032147 86 TMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 86 ~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|+.|.|.|.+
T Consensus 192 --------~~~C~~C~G~g~v 204 (369)
T PRK14288 192 --------KTPCQACKGKTYI 204 (369)
T ss_pred --------cccCccCCCcceE
Confidence 4679999999986
No 41
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.08 E-value=6.8e-06 Score=69.81 Aligned_cols=74 Identities=20% Similarity=0.451 Sum_probs=55.7
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEEE
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRTN 81 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~~ 81 (146)
..++||++.+....+.++....+ ....|.-... -.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 124 ~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (376)
T PRK14280 124 TLTFEEAVFGKEKEIEIPKEETC---DTCHGSGAKP-GTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI 199 (376)
T ss_pred EEEHHHHhCCceeEEEEeeeccC---CCCCCcccCC-CCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee
Confidence 35899999999888888877743 3344433221 124678999999985 4799999999986
Q ss_pred EEeeeCCCCcccceeCCCCCCccEE
Q 032147 82 KTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 82 ~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|+.|.|+|.+
T Consensus 200 ------------~~~C~~C~G~g~v 212 (376)
T PRK14280 200 ------------KEKCPTCHGKGKV 212 (376)
T ss_pred ------------cCCCCCCCCceEE
Confidence 4679999999986
No 42
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.08 E-value=5.6e-06 Score=70.14 Aligned_cols=74 Identities=24% Similarity=0.525 Sum_probs=55.7
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEEE
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRTN 81 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~~ 81 (146)
..++||++.+....++++.... |....|.-..- -.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 133 ~~slee~~~G~~~~i~~~r~~~---C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 208 (369)
T PRK14282 133 EVTLSDLINGAEIPVEYDRYET---CPHCGGTGVEP-GSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP 208 (369)
T ss_pred EEEHHHhcCCeEEEEEeeeccc---CCCCCccCCCC-CCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC
Confidence 3589999999888888877763 33444433221 124578999999995 4799999999985
Q ss_pred EEeeeCCCCcccceeCCCCCCccEE
Q 032147 82 KTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 82 ~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
...|+.|+|+|.+
T Consensus 209 ------------~~~C~~C~G~g~v 221 (369)
T PRK14282 209 ------------GEYCHECGGSGRI 221 (369)
T ss_pred ------------CCCCCCCCCceeE
Confidence 5679999999975
No 43
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.08 E-value=6e-06 Score=70.12 Aligned_cols=75 Identities=21% Similarity=0.368 Sum_probs=56.1
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEE
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRT 80 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~ 80 (146)
...++||++.+....+.+.....+. ...|.-... -.....|+.|+|+|. .+|+.|+|+|.+
T Consensus 129 l~ltlee~~~G~~~~i~~~~~~~C~---~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~ 204 (372)
T PRK14296 129 IYLTFKELLFGVDKIIELDLLTNCS---KCFGSGAES-NSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKI 204 (372)
T ss_pred eeccHHHhhCCeeEEEEEeeeeccC---CCCCCccCC-CCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCccee
Confidence 3358999999988888888777433 444433221 123577999999995 379999999998
Q ss_pred EEEeeeCCCCcccceeCCCCCCccEE
Q 032147 81 NKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 81 ~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
+ ...|+.|+|+|.+
T Consensus 205 ~------------~~~C~~C~G~g~v 218 (372)
T PRK14296 205 I------------KNKCKNCKGKGKY 218 (372)
T ss_pred e------------cccccCCCCceEE
Confidence 6 5679999999976
No 44
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.07 E-value=5.3e-06 Score=70.55 Aligned_cols=75 Identities=23% Similarity=0.439 Sum_probs=55.9
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEE
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRT 80 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~ 80 (146)
...++||++.+....+.+.....+. ...|.-... -.....|+.|+|+|. .+|+.|+|+|.+
T Consensus 121 l~vslee~~~G~~~~i~~~r~~~C~---~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 196 (377)
T PRK14298 121 LYITLEEAAFGVRKDIDVPRAERCS---TCSGTGAKP-GTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQV 196 (377)
T ss_pred EEEEHHHhhCCeEEEEEEEeeccCC---CCCCCcccC-CCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcc
Confidence 3358999999988888888777433 334433221 123578999999994 579999999997
Q ss_pred EEEeeeCCCCcccceeCCCCCCccEE
Q 032147 81 NKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 81 ~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
+ ..+|+.|.|+|.+
T Consensus 197 ~------------~~~C~~C~G~g~v 210 (377)
T PRK14298 197 I------------ESPCPVCSGTGKV 210 (377)
T ss_pred c------------CCCCCCCCCccEE
Confidence 5 4679999999986
No 45
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.07 E-value=6.1e-06 Score=70.07 Aligned_cols=74 Identities=23% Similarity=0.486 Sum_probs=55.8
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEee
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTHL 85 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~~ 85 (146)
..++||++.+....+.+.....+. ...|.-... -.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 125 ~vtLee~~~G~~k~i~~~r~~~C~---~C~G~G~~~-~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~---- 196 (373)
T PRK14301 125 TVSFRQAAKGDEVTLRIPKNVTCD---DCGGSGAAP-GTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI---- 196 (373)
T ss_pred eccHHHHhCCceEEEEeeecccCC---CCCCcccCC-CCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec----
Confidence 358999999988888887776433 334432221 124578999999995 6899999999986
Q ss_pred eCCCCcccceeCCCCCCccEE
Q 032147 86 TMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 86 ~~~g~~~~~~~C~~C~G~G~~ 106 (146)
...|+.|.|+|.+
T Consensus 197 --------~~~C~~C~G~g~v 209 (373)
T PRK14301 197 --------THPCPKCKGSGIV 209 (373)
T ss_pred --------CCCCCCCCCCcee
Confidence 4679999999986
No 46
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.06 E-value=6.3e-06 Score=69.92 Aligned_cols=74 Identities=23% Similarity=0.378 Sum_probs=55.6
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEee
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTHL 85 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~~ 85 (146)
..++||++.+....+.+.....+. ...|.-... -.....|+.|+|+|. .+|+.|+|+|+++
T Consensus 126 ~~sLee~~~G~~k~i~~~r~~~C~---~C~G~g~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~---- 197 (372)
T PRK14300 126 TINLEEAFHGIEKNISFSSEVKCD---TCHGSGSEK-GETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII---- 197 (372)
T ss_pred EEEHHHHhCCceEEEEeeeccccC---CCCCcccCC-CCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe----
Confidence 348999999988888887776433 333432211 124578999999995 5799999999986
Q ss_pred eCCCCcccceeCCCCCCccEE
Q 032147 86 TMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 86 ~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|+.|.|+|.+
T Consensus 198 --------~~~C~~C~G~g~v 210 (372)
T PRK14300 198 --------KNPCKKCHGMGRY 210 (372)
T ss_pred --------CCCCCCCCCceEE
Confidence 4679999999997
No 47
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.06 E-value=6.6e-06 Score=69.85 Aligned_cols=75 Identities=24% Similarity=0.472 Sum_probs=56.5
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEe
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTH 84 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~ 84 (146)
...++||++......+.++....+. ...|.-..- -.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 130 l~vtLee~~~G~~k~i~~~r~~~C~---~C~G~G~~~-~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~--- 202 (372)
T PRK14286 130 LEVSLEDAALGREYKIEIPRLESCV---DCNGSGASK-GSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI--- 202 (372)
T ss_pred EEEEHHHHhCCeeEEEEeeccccCC---CCcCCCcCC-CCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe---
Confidence 4458999999998888888777433 344433221 123578999999995 5799999999986
Q ss_pred eeCCCCcccceeCCCCCCccEE
Q 032147 85 LTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 85 ~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|+.|+|+|.+
T Consensus 203 ---------~~~C~~C~G~g~~ 215 (372)
T PRK14286 203 ---------SNPCKTCGGQGLQ 215 (372)
T ss_pred ---------cccCCCCCCCcEE
Confidence 4679999999997
No 48
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.05 E-value=7.9e-06 Score=69.78 Aligned_cols=75 Identities=27% Similarity=0.495 Sum_probs=56.6
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEe
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTH 84 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~ 84 (146)
...++||++......++++....+. ...|.-..- -.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 146 l~lsLee~~~G~~k~i~~~r~~~C~---~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--- 218 (389)
T PRK14295 146 VTLSFTEAIDGATVPLRLTSQAPCP---ACSGTGAKN-GTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA--- 218 (389)
T ss_pred EEEEHHHHhCCceEEEEeeccccCC---CCcccccCC-CCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe---
Confidence 3358999999988888888777433 444433221 123578999999995 6899999999986
Q ss_pred eeCCCCcccceeCCCCCCccEE
Q 032147 85 LTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 85 ~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|..|.|+|.+
T Consensus 219 ---------~~~C~~C~G~g~~ 231 (389)
T PRK14295 219 ---------DDPCLVCKGSGRA 231 (389)
T ss_pred ---------ccCCCCCCCCceE
Confidence 4679999999986
No 49
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.04 E-value=7e-06 Score=70.08 Aligned_cols=75 Identities=27% Similarity=0.454 Sum_probs=56.4
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEe
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTH 84 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~ 84 (146)
...++||++......++++.... |....|.-.... .....|+.|+|+|. .+|+.|+|+|.++
T Consensus 138 l~vslee~~~G~~~~i~~~r~~~---C~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~--- 210 (391)
T PRK14284 138 ITLSFEEAAKGVEKELLVSGYKS---CDACSGSGANSS-QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI--- 210 (391)
T ss_pred EEEEHHHHhCCeeEEEEEeeecc---CCCCcccccCCC-CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc---
Confidence 34589999999988888887763 334444333211 23578999999996 5899999999975
Q ss_pred eeCCCCcccceeCCCCCCccEE
Q 032147 85 LTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 85 ~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|+.|.|+|.+
T Consensus 211 ---------~~~C~~C~G~g~v 223 (391)
T PRK14284 211 ---------TDPCSVCRGQGRI 223 (391)
T ss_pred ---------CCcCCCCCCccee
Confidence 4679999999986
No 50
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.04 E-value=6.4e-06 Score=70.47 Aligned_cols=73 Identities=25% Similarity=0.547 Sum_probs=56.3
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEEE
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRTN 81 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~~ 81 (146)
..++||++.+....+.++....|. ...|.-..- .....|+.|+|+|. .+|+.|+|+|.++
T Consensus 144 ~vtLee~~~G~~~~i~~~r~~~C~---~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 218 (397)
T PRK14281 144 KLTLEEIAKGVEKTLKIKKQVPCK---ECNGTGSKT--GATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV 218 (397)
T ss_pred EeEHHHHhCCeEEEEEEEeeecCC---CCCCcccCC--CCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee
Confidence 458999999998888888777433 344433221 24678999999994 4799999999986
Q ss_pred EEeeeCCCCcccceeCCCCCCccEE
Q 032147 82 KTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 82 ~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|+.|.|.|.+
T Consensus 219 ------------~~~C~~C~G~g~v 231 (397)
T PRK14281 219 ------------KDRCPACYGEGIK 231 (397)
T ss_pred ------------CCCCCCCCCCccE
Confidence 4679999999987
No 51
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.03 E-value=7.2e-06 Score=69.47 Aligned_cols=75 Identities=21% Similarity=0.492 Sum_probs=56.2
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEe
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTH 84 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~ 84 (146)
...++||++......+.++.... |....|.-.. .-.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 126 l~vtlee~~~G~~~~i~~~r~~~---C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~--- 198 (365)
T PRK14285 126 IEISLEDAYLGYKNNINITRNML---CESCLGKKSE-KGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII--- 198 (365)
T ss_pred EEEEHHHhhCCeEEEEEeeeccc---CCCCCCcccC-CCCCCccCCCccCceeEEecCceeEEeeecCCCCCccccc---
Confidence 34589999999888888887763 3334444322 1123578999999995 5899999999986
Q ss_pred eeCCCCcccceeCCCCCCccEE
Q 032147 85 LTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 85 ~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|..|+|+|.+
T Consensus 199 ---------~~~C~~C~G~g~v 211 (365)
T PRK14285 199 ---------SNPCKSCKGKGSL 211 (365)
T ss_pred ---------CCCCCCCCCCCEE
Confidence 5679999999976
No 52
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.03 E-value=7.9e-06 Score=69.15 Aligned_cols=74 Identities=24% Similarity=0.485 Sum_probs=55.8
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEE
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRT 80 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~ 80 (146)
...++||++.+....+.+..... |....|.-... .....|+.|+|+|. .+|+.|+|+|++
T Consensus 129 l~lsLee~~~G~~~~i~~~r~~~---C~~C~G~g~~~--~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~ 203 (365)
T PRK14290 129 LDISLEDAYYGTEKRIKYRRNAM---CPDCSGTGAKN--GKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI 203 (365)
T ss_pred EEecHHHhcCCEEEEEEeeeccc---CCCCccccCCC--CCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE
Confidence 33589999999888888877763 33344433221 24678999999994 489999999998
Q ss_pred EEEeeeCCCCcccceeCCCCCCccEE
Q 032147 81 NKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 81 ~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
. ..+|+.|+|+|.+
T Consensus 204 ~------------~~~C~~C~G~g~v 217 (365)
T PRK14290 204 P------------EEKCPRCNGTGTV 217 (365)
T ss_pred c------------cCCCCCCCCceeE
Confidence 5 5789999999996
No 53
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.02 E-value=9.7e-06 Score=68.62 Aligned_cols=75 Identities=19% Similarity=0.360 Sum_probs=55.7
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEe
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTH 84 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~ 84 (146)
...++||++.+....+.++....+. ...|.-... -.....|+.|+|+|. .+|+.|+|+|..+
T Consensus 124 l~lslee~~~G~~~~i~~~r~~~C~---~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~--- 196 (366)
T PRK14294 124 LTLPFLEAAFGTEKEIRIQKLETCE---ECHGSGCEP-GTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI--- 196 (366)
T ss_pred EEeeHHHhcCCeEEEEEeeecccCC---CCCCccccC-CCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec---
Confidence 3458999999988888887776333 333432221 123578999999995 5899999999985
Q ss_pred eeCCCCcccceeCCCCCCccEE
Q 032147 85 LTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 85 ~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
...|+.|.|+|.+
T Consensus 197 ---------~~~C~~C~G~g~v 209 (366)
T PRK14294 197 ---------VSPCKTCHGQGRV 209 (366)
T ss_pred ---------CcCCCCCCCceEe
Confidence 5679999999986
No 54
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.01 E-value=8e-06 Score=69.54 Aligned_cols=73 Identities=22% Similarity=0.510 Sum_probs=55.4
Q ss_pred cchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEEEE
Q 032147 18 NRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRTNK 82 (146)
Q Consensus 18 ~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~~~ 82 (146)
.++||++.+....+++.....|..| ..+|... -.....|+.|+|+|. .+|+.|+|+|+++
T Consensus 136 vsLee~~~G~~~~i~~~r~~~C~~C-~G~G~~~---~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~- 210 (386)
T PRK14289 136 LNLKEISTGVEKKFKVKKYVPCSHC-HGTGAEG---NNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII- 210 (386)
T ss_pred EEHHHhhCCeEEEEEEEeecccCCC-CCCCCCC---CCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-
Confidence 4899999998888888877744433 2233222 134678999999986 3799999999886
Q ss_pred EeeeCCCCcccceeCCCCCCccEE
Q 032147 83 THLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 83 ~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
...|+.|.|+|.+
T Consensus 211 -----------~~~C~~C~G~g~v 223 (386)
T PRK14289 211 -----------KKKCKKCGGEGIV 223 (386)
T ss_pred -----------CcCCCCCCCCcEE
Confidence 4679999999986
No 55
>PRK14277 chaperone protein DnaJ; Provisional
Probab=97.96 E-value=1.3e-05 Score=68.29 Aligned_cols=74 Identities=23% Similarity=0.436 Sum_probs=55.7
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEEE
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRTN 81 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~~ 81 (146)
..++||++.+....+.++....+. ...|.-... -.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 136 ~vtLee~~~G~~~~v~~~r~~~C~---~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 211 (386)
T PRK14277 136 ELTFEEAAFGTEKEIEVERFEKCD---VCKGSGAKP-GSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII 211 (386)
T ss_pred EEEHHHHhCCeEEEEEEEeeccCC---CCCCCCcCC-CCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec
Confidence 358999999988888888777433 334433221 123578999999985 4799999999986
Q ss_pred EEeeeCCCCcccceeCCCCCCccEE
Q 032147 82 KTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 82 ~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|..|+|+|.+
T Consensus 212 ------------~~~C~~C~G~g~v 224 (386)
T PRK14277 212 ------------TDPCNKCGGTGRI 224 (386)
T ss_pred ------------cCCCCCCCCCcEE
Confidence 4679999999987
No 56
>PRK14276 chaperone protein DnaJ; Provisional
Probab=97.96 E-value=1.1e-05 Score=68.61 Aligned_cols=75 Identities=25% Similarity=0.429 Sum_probs=55.1
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEE
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRT 80 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~ 80 (146)
...++||++.+....+.+.....+. ...|.-..- -.....|+.|+|+|. .+|+.|+|+|.+
T Consensus 126 l~vtLee~~~G~~~~i~~~~~~~C~---~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 201 (380)
T PRK14276 126 VNLDFEEAIFGKEKEVSYNREATCH---TCNGSGAKP-GTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKE 201 (380)
T ss_pred EEEEHHHhcCCeEEEEEeeccccCC---CCcCcccCC-CCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcc
Confidence 3458999999988888887766433 333432211 123578999999985 479999999998
Q ss_pred EEEeeeCCCCcccceeCCCCCCccEE
Q 032147 81 NKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 81 ~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
+ ..+|+.|.|+|.+
T Consensus 202 ~------------~~~C~~C~G~g~~ 215 (380)
T PRK14276 202 I------------KEPCQTCHGTGHE 215 (380)
T ss_pred c------------cCCCCCCCCceEE
Confidence 6 4679999999986
No 57
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.94 E-value=1.4e-05 Score=67.60 Aligned_cols=74 Identities=22% Similarity=0.480 Sum_probs=55.5
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEee
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTHL 85 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~~ 85 (146)
..++||++.+....+.+.....+ ....|.-... -.....|+.|+|+|. .+|+.|+|+|..+
T Consensus 123 ~vsLee~~~G~~~~v~~~r~~~C---~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~---- 194 (371)
T PRK10767 123 EITLEEAVRGVTKEIRIPTLVTC---DTCHGSGAKP-GTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII---- 194 (371)
T ss_pred EeehHHhhCCeeEEEeeeecccC---CCCCCcccCC-CCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC----
Confidence 35899999998888888877633 3344433221 123568999999996 4699999999985
Q ss_pred eCCCCcccceeCCCCCCccEE
Q 032147 86 TMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 86 ~~~g~~~~~~~C~~C~G~G~~ 106 (146)
...|+.|.|+|.+
T Consensus 195 --------~~~C~~C~G~g~v 207 (371)
T PRK10767 195 --------KDPCKKCHGQGRV 207 (371)
T ss_pred --------CCCCCCCCCCceE
Confidence 4679999999987
No 58
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.94 E-value=1.7e-05 Score=67.46 Aligned_cols=75 Identities=21% Similarity=0.428 Sum_probs=55.7
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEE
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRT 80 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~ 80 (146)
...++||++.+....+.+.....+. ...|.-... -.....|+.|+|+|. .+|+.|+|+|.+
T Consensus 128 l~vsLee~~~G~~~~i~~~r~~~C~---~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 203 (380)
T PRK14297 128 INLTFEEAVFGVEKEISVTRNENCE---TCNGTGAKP-GTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV 203 (380)
T ss_pred EEEEHHHhcCCeEEEEEeeeeccCC---CcccccccC-CCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE
Confidence 3458999999988888888777433 344433221 123578999999984 479999999998
Q ss_pred EEEeeeCCCCcccceeCCCCCCccEE
Q 032147 81 NKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 81 ~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
+ ...|..|.|.|.+
T Consensus 204 ~------------~~~C~~C~G~g~v 217 (380)
T PRK14297 204 I------------EDPCNKCHGKGKV 217 (380)
T ss_pred c------------CCCCCCCCCCeEE
Confidence 6 4679999999965
No 59
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.93 E-value=1.6e-05 Score=66.85 Aligned_cols=74 Identities=23% Similarity=0.456 Sum_probs=54.8
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEEE
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRTN 81 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~~ 81 (146)
..++||++.+....+.+..... |....|.-... -.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 124 ~vsLee~~~G~~~~i~~~r~~~---C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (354)
T TIGR02349 124 ELTFEEAVFGVEKEIEIPRKES---CETCHGTGAKP-GTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII 199 (354)
T ss_pred EEEHHHHhCCeeEEEEeecCCc---CCCCCCCCCCC-CCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec
Confidence 3589999999888888876663 33333432211 123678999999984 5799999999986
Q ss_pred EEeeeCCCCcccceeCCCCCCccEE
Q 032147 82 KTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 82 ~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
...|+.|.|+|.+
T Consensus 200 ------------~~~C~~C~G~g~v 212 (354)
T TIGR02349 200 ------------KEPCSTCKGKGRV 212 (354)
T ss_pred ------------CCCCCCCCCCcEe
Confidence 4579999999986
No 60
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.93 E-value=1.4e-05 Score=69.11 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=59.4
Q ss_pred CCcee--eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCC
Q 032147 11 TPSTV--VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYN 73 (146)
Q Consensus 11 ~ps~~--~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~ 73 (146)
++... ...++||++.+....+.+..... |....|.-.. -.....|+.|+|+|. .+|+.
T Consensus 123 g~di~~~l~vtLee~~~G~~~~i~~~r~~~---C~~C~G~G~~--~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~ 197 (421)
T PTZ00037 123 GEDIVSHLKVTLEQIYNGAMRKLAINKDVI---CANCEGHGGP--KDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNS 197 (421)
T ss_pred CCCEEEEeeeeHHHHhCCCceEEEeecccc---ccccCCCCCC--CCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCC
Confidence 44443 34589999999888888877663 3344444322 124678999999994 48999
Q ss_pred CCCccEEEEEeeeCCCCcccceeCCCCCCccEE
Q 032147 74 CSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 74 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
|+|+|.++.. ..+|+.|+|+|.+
T Consensus 198 C~G~G~~i~~----------~~~C~~C~G~g~v 220 (421)
T PTZ00037 198 CNGQGKIIPE----------SKKCKNCSGKGVK 220 (421)
T ss_pred CCCcceeccc----------cccCCcCCCccee
Confidence 9999998742 4789999999987
No 61
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.92 E-value=1.5e-05 Score=67.67 Aligned_cols=74 Identities=19% Similarity=0.424 Sum_probs=56.1
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEEE
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRTN 81 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~~ 81 (146)
..++||++.+....+.+..... |....|.-.. .-.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 119 ~vslee~~~G~~~~i~~~r~~~---C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK14287 119 TLEFKEAVFGKETEIEIPREET---CGTCHGSGAK-PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII 194 (371)
T ss_pred EEEHHHhcCCeEEEEEEeeecc---CCCCCCcccC-CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence 3589999999888888887773 3344444322 1234678999999995 5799999999985
Q ss_pred EEeeeCCCCcccceeCCCCCCccEE
Q 032147 82 KTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 82 ~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
...|+.|.|.|.+
T Consensus 195 ------------~~~C~~C~G~g~v 207 (371)
T PRK14287 195 ------------KQKCATCGGKGKV 207 (371)
T ss_pred ------------cccCCCCCCeeEE
Confidence 4679999999976
No 62
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.89 E-value=1.8e-05 Score=66.99 Aligned_cols=75 Identities=24% Similarity=0.487 Sum_probs=56.1
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEEE
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRTN 81 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~~ 81 (146)
..++||++.+....+.+..... |....|.-..........|..|+|+|. .+|+.|+|+|...
T Consensus 120 ~~sLee~~~G~~~~v~~~r~~~---C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 196 (371)
T PRK14292 120 RITLEQARAGEEVEVEVDRLTE---CEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII 196 (371)
T ss_pred eccHHHHcCCeEEEEEEEeeec---CCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence 3589999998888888876663 334445443322223678999999995 3699999999975
Q ss_pred EEeeeCCCCcccceeCCCCCCccEE
Q 032147 82 KTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 82 ~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
...|+.|.|+|.+
T Consensus 197 ------------~~~C~~C~G~g~v 209 (371)
T PRK14292 197 ------------TDPCTVCRGRGRT 209 (371)
T ss_pred ------------CCCCCCCCCceEE
Confidence 5789999999976
No 63
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.81 E-value=2.9e-05 Score=65.87 Aligned_cols=74 Identities=18% Similarity=0.434 Sum_probs=55.3
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEEE
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRTN 81 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~~ 81 (146)
..++||++.+....+.+....++..| ...|.... .....|+.|+|+|. .+|+.|+|+|+++
T Consensus 124 ~vsLee~~~G~~k~i~~~r~~~C~~C-~G~G~~~~---~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (374)
T PRK14293 124 KLDFREAIFGGEKEIRIPHLETCETC-RGSGAKPG---TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI 199 (374)
T ss_pred EeeHHHHhCCceEEEEeeccccCCCC-CCcCCCCC---CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe
Confidence 35899999998888888777644433 23333221 23568999999995 4799999999985
Q ss_pred EEeeeCCCCcccceeCCCCCCccEE
Q 032147 82 KTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 82 ~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|..|.|+|.+
T Consensus 200 ------------~~~C~~C~G~g~v 212 (374)
T PRK14293 200 ------------EDPCDACGGQGVK 212 (374)
T ss_pred ------------ccCCCCCCCCccc
Confidence 4679999999986
No 64
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.77 E-value=3.5e-05 Score=65.49 Aligned_cols=74 Identities=23% Similarity=0.519 Sum_probs=55.3
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcCCCCCccEEE
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCYNCSGKGRTN 81 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~~C~G~G~~~ 81 (146)
..++||++.+....+.+..... |....|.-..- -.....|+.|+|+|. .+|+.|+|+|..+
T Consensus 127 ~vsLed~~~G~~~~i~~~r~~~---C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 202 (378)
T PRK14283 127 EITLEEAASGVEKDIKVRHTKK---CPVCNGSRAEP-GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV 202 (378)
T ss_pred eeeHHHHhCCcceEEEeeeecc---CCCCCccccCC-CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec
Confidence 3489999999888888887763 33344433221 124678999999985 4799999999985
Q ss_pred EEeeeCCCCcccceeCCCCCCccEE
Q 032147 82 KTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 82 ~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|..|.|+|.+
T Consensus 203 ------------~~~C~~C~G~g~v 215 (378)
T PRK14283 203 ------------EKPCSNCHGKGVV 215 (378)
T ss_pred ------------CCCCCCCCCceee
Confidence 4679999999986
No 65
>PRK14291 chaperone protein DnaJ; Provisional
Probab=97.75 E-value=5.2e-05 Score=64.55 Aligned_cols=73 Identities=25% Similarity=0.499 Sum_probs=53.4
Q ss_pred ecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEee
Q 032147 17 RNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTHL 85 (146)
Q Consensus 17 ~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~~ 85 (146)
..++||++.+....+.+..... |....|.-... -.....|+.|+|+|. .+|+.|+|+|.+
T Consensus 137 ~vsLee~~~G~~~~i~~~r~~~---C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----- 207 (382)
T PRK14291 137 EISLEEAYTGTTVSLEVPRYVP---CEACGGTGYDP-GSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL----- 207 (382)
T ss_pred EEEHHHhhCCEEEEEEEeeecc---CCCCccccCCC-CCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE-----
Confidence 3489999999888888876663 33334432221 124678999999995 589999999952
Q ss_pred eCCCCcccceeCCCCCCccEE
Q 032147 86 TMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 86 ~~~g~~~~~~~C~~C~G~G~~ 106 (146)
...|..|+|.|.+
T Consensus 208 --------~~~C~~C~G~g~v 220 (382)
T PRK14291 208 --------REPCSKCNGRGLV 220 (382)
T ss_pred --------ccCCCCCCCCceE
Confidence 3579999999986
No 66
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.62 E-value=8.2e-05 Score=57.85 Aligned_cols=38 Identities=32% Similarity=0.597 Sum_probs=30.6
Q ss_pred ceeCCCCCCccEE-----eCCCCCCeeEEEeeEEEEEEeCCCC
Q 032147 94 PKWCKTCSGGGLI-----YCSRCLGTGEYRYPMGFHFVKKSDS 131 (146)
Q Consensus 94 ~~~C~~C~G~G~~-----~C~~C~G~G~~~~~~~~~v~~~~~~ 131 (146)
+.+|+.|+|+|++ +|+.|+|+|+++.+++..++..+.|
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~~g~~ 141 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKSFGVD 141 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEeeecc
Confidence 5677777777776 5999999999999999998875543
No 67
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.00012 Score=65.34 Aligned_cols=45 Identities=42% Similarity=0.963 Sum_probs=36.7
Q ss_pred CcccCccCcCcee------------------------eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE-eCCC
Q 032147 56 PEPPCIVCHGTGR------------------------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI-YCSR 110 (146)
Q Consensus 56 ~~~~C~~C~GsG~------------------------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-~C~~ 110 (146)
....|+.|+|+|. .+|+.|.|+|.+.. ..+|+.|.|+|++ .|..
T Consensus 17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v-----------~~~c~~c~G~gkv~~c~~ 85 (715)
T COG1107 17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV-----------YDTCPECGGTGKVLTCDI 85 (715)
T ss_pred eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE-----------EeecccCCCceeEEeecc
Confidence 4677999999884 58999999999875 4679999999998 7777
Q ss_pred C
Q 032147 111 C 111 (146)
Q Consensus 111 C 111 (146)
|
T Consensus 86 c 86 (715)
T COG1107 86 C 86 (715)
T ss_pred c
Confidence 7
No 68
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.01 E-value=0.0008 Score=48.31 Aligned_cols=33 Identities=42% Similarity=1.071 Sum_probs=23.6
Q ss_pred cCccCcCcee------------eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE
Q 032147 59 PCIVCHGTGR------------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 59 ~C~~C~GsG~------------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
.|+.|+|+|. .+|+.|+|+|.. .|+.|.|+|.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~ 98 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQ 98 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEE
Confidence 6888888774 467777777752 28888888776
No 69
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.72 E-value=0.00099 Score=51.86 Aligned_cols=25 Identities=40% Similarity=0.901 Sum_probs=11.6
Q ss_pred cccCccCcCcee-----eEcCCCCCccEEE
Q 032147 57 EPPCIVCHGTGR-----VDCYNCSGKGRTN 81 (146)
Q Consensus 57 ~~~C~~C~GsG~-----~~C~~C~G~G~~~ 81 (146)
...|+.|+|+|. .+|+.|+|+|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence 344555555553 1255555554443
No 70
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0013 Score=55.37 Aligned_cols=81 Identities=26% Similarity=0.445 Sum_probs=58.9
Q ss_pred CCceeeec--chhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee----------------eEcC
Q 032147 11 TPSTVVRN--RIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR----------------VDCY 72 (146)
Q Consensus 11 ~ps~~~~~--~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~----------------~~C~ 72 (146)
+++++... ++||++.+...++.++..--+..+...-|.+. ....|..|.|+|. ..|.
T Consensus 100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg-----~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~ 174 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSG-----SAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCD 174 (337)
T ss_pred CCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCC-----CCCCCCCCCCCCceeEEEeccccccccceeEec
Confidence 77776554 79999999888888886662222222222221 2447999999994 7899
Q ss_pred CCCCccEEEEEeeeCCCCcccceeCCCCCCccEE
Q 032147 73 NCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 73 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
.|+|+|..+.. ...|+.|.|++++
T Consensus 175 ~C~G~G~~~~~----------kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 175 SCNGSGETISL----------KDRCKTCSGAKVV 198 (337)
T ss_pred cCCCccccccc----------cccCcccccchhh
Confidence 99999997432 6889999999997
No 71
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0015 Score=54.86 Aligned_cols=34 Identities=38% Similarity=0.720 Sum_probs=22.0
Q ss_pred eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE
Q 032147 69 VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 69 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..|..|+|+|...... +......+|.+|.|+|.+
T Consensus 235 ~~C~~C~G~G~~~C~t----C~grG~k~C~TC~gtgsl 268 (406)
T KOG2813|consen 235 DLCYMCHGRGIKECHT----CKGRGKKPCTTCSGTGSL 268 (406)
T ss_pred chhhhccCCCcccCCc----ccCCCCcccccccCccce
Confidence 4466666666654322 333346789999999997
No 72
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.011 Score=48.64 Aligned_cols=53 Identities=25% Similarity=0.582 Sum_probs=43.5
Q ss_pred CcccCccCcCceeeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEEeCCCCC
Q 032147 56 PEPPCIVCHGTGRVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLIYCSRCL 112 (146)
Q Consensus 56 ~~~~C~~C~GsG~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~C~~C~ 112 (146)
....|..|.|.+..+|..|+|+=.+.... .......+|+.|+=-|-+.|+.|.
T Consensus 228 ~~~~C~~CGg~rFlpC~~C~GS~kv~~~~----~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 228 GGGVCESCGGARFLPCSNCHGSCKVHEEE----EDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCCcCCCcCCcceEecCCCCCceeeeeec----cCCCcEEECcccCCCCceeCCccC
Confidence 34789999999999999999999987631 122346899999999999999995
No 73
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.17 E-value=0.07 Score=39.96 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=23.8
Q ss_pred cccCccCcCceeeEcCCCCCccEEEEE
Q 032147 57 EPPCIVCHGTGRVDCYNCSGKGRTNKT 83 (146)
Q Consensus 57 ~~~C~~C~GsG~~~C~~C~G~G~~~~~ 83 (146)
...|..|.|.+..+|..|+|+=.+...
T Consensus 99 ~~~C~~Cgg~rfv~C~~C~Gs~k~~~~ 125 (147)
T cd03031 99 GGVCEGCGGARFVPCSECNGSCKVFAE 125 (147)
T ss_pred CCCCCCCCCcCeEECCCCCCcceEEec
Confidence 457999999999999999999998754
No 74
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=91.14 E-value=0.23 Score=37.15 Aligned_cols=24 Identities=29% Similarity=0.743 Sum_probs=14.4
Q ss_pred eeCCCCCCccEEeCCCCCCeeEEE
Q 032147 95 KWCKTCSGGGLIYCSRCLGTGEYR 118 (146)
Q Consensus 95 ~~C~~C~G~G~~~C~~C~G~G~~~ 118 (146)
..|..|.|.+.++|..|+|+-.+.
T Consensus 100 ~~C~~Cgg~rfv~C~~C~Gs~k~~ 123 (147)
T cd03031 100 GVCEGCGGARFVPCSECNGSCKVF 123 (147)
T ss_pred CCCCCCCCcCeEECCCCCCcceEE
Confidence 346666666666666666665553
No 75
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.35 E-value=0.16 Score=41.93 Aligned_cols=73 Identities=21% Similarity=0.436 Sum_probs=51.7
Q ss_pred cchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEeee
Q 032147 18 NRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTHLT 86 (146)
Q Consensus 18 ~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~~~ 86 (146)
..|++.+......+.+.+.+.+. ...|.. .........|..|.|+|. .+|..|+|.|.+..
T Consensus 146 ~~f~~A~~g~~~~~~~~~~~~~~---t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~---- 217 (288)
T KOG0715|consen 146 LDFKEAVRGSKKRISFNVLSDCE---TCFGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR---- 217 (288)
T ss_pred cCHHHHhhccccceEEEeecccc---cccCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc----
Confidence 35667776666677777777332 333333 233456889999999992 45999999999873
Q ss_pred CCCCcccceeCCCCCCccEE
Q 032147 87 MLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 87 ~~g~~~~~~~C~~C~G~G~~ 106 (146)
..|..|.|.|.+
T Consensus 218 --------~~c~~~~g~~~v 229 (288)
T KOG0715|consen 218 --------DNCQACSGAGQV 229 (288)
T ss_pred --------chHHHhhcchhh
Confidence 339999999976
No 76
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.17 E-value=0.079 Score=50.20 Aligned_cols=32 Identities=28% Similarity=0.700 Sum_probs=24.2
Q ss_pred eeCCCCCCccEE------------eCCCCCCeeEEEeeEEEEEE
Q 032147 95 KWCKTCSGGGLI------------YCSRCLGTGEYRYPMGFHFV 126 (146)
Q Consensus 95 ~~C~~C~G~G~~------------~C~~C~G~G~~~~~~~~~v~ 126 (146)
-.|+.|.|.|.+ +|+.|+|+.+..+...++++
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~ 780 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYK 780 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeC
Confidence 447777777776 89999999988876555554
No 77
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=0.43 Score=39.31 Aligned_cols=23 Identities=30% Similarity=0.761 Sum_probs=13.2
Q ss_pred CCCCCCccEE-----------eCCCCCCeeEEEe
Q 032147 97 CKTCSGGGLI-----------YCSRCLGTGEYRY 119 (146)
Q Consensus 97 C~~C~G~G~~-----------~C~~C~G~G~~~~ 119 (146)
|..|+|+-++ .|..|+-.|.++.
T Consensus 243 C~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrC 276 (281)
T KOG2824|consen 243 CSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRC 276 (281)
T ss_pred cCCCCCceeeeeeccCCCcEEECcccCCCCceeC
Confidence 5666665443 5666666666553
No 78
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.13 E-value=0.33 Score=46.11 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=25.1
Q ss_pred EcCCCCCccEEEEEeeeCCCCc-ccceeCCCCCCccEE
Q 032147 70 DCYNCSGKGRTNKTHLTMLPRG-EWPKWCKTCSGGGLI 106 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~C~G~G~~ 106 (146)
.|+.|.|.|++.... .++ ....+|+.|+|+...
T Consensus 738 ~C~~C~G~G~~~~~~----~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 738 RCEACQGDGVIKIEM----HFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCccceEEEEEc----cCCCCcccCCCCcCCceeC
Confidence 489999999988654 333 357899999999765
No 79
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=88.15 E-value=0.32 Score=45.71 Aligned_cols=36 Identities=28% Similarity=0.617 Sum_probs=25.4
Q ss_pred eeCCCCCCccEE------------eCCCCCCeeEEEeeEEEEEEeCCC
Q 032147 95 KWCKTCSGGGLI------------YCSRCLGTGEYRYPMGFHFVKKSD 130 (146)
Q Consensus 95 ~~C~~C~G~G~~------------~C~~C~G~G~~~~~~~~~v~~~~~ 130 (146)
-+|..|.|.|.+ +|+.|+|+-+-+++-++..+=+++
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~EtLev~ykGK~I 778 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKGKNI 778 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccccceEEEEECCccH
Confidence 467888887776 899999988877665555554333
No 80
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=87.60 E-value=0.37 Score=45.86 Aligned_cols=37 Identities=27% Similarity=0.611 Sum_probs=26.7
Q ss_pred eeCCCCCCccEE------------eCCCCCCeeEEEeeEEEEEEeCCCC
Q 032147 95 KWCKTCSGGGLI------------YCSRCLGTGEYRYPMGFHFVKKSDS 131 (146)
Q Consensus 95 ~~C~~C~G~G~~------------~C~~C~G~G~~~~~~~~~v~~~~~~ 131 (146)
-.|+.|.|.|.+ +|+.|+|+.+..+...+++.=.+..
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~ 787 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIA 787 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCccccccceEEEECCCCHH
Confidence 357777777776 8999999999887766665533433
No 81
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=84.05 E-value=0.85 Score=43.49 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=25.0
Q ss_pred EcCCCCCccEEEEEeeeCCCCc-ccceeCCCCCCccEE
Q 032147 70 DCYNCSGKGRTNKTHLTMLPRG-EWPKWCKTCSGGGLI 106 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~C~G~G~~ 106 (146)
.|+.|.|.|.+.... .++ ....+|+.|+|+...
T Consensus 740 ~C~~C~G~G~~~~~~----~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 740 RCEACQGDGVIKIEM----HFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCcccccceEEEEe----ccCCCccccCccccCcccc
Confidence 499999999988654 233 346799999999775
No 82
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=82.97 E-value=0.27 Score=49.58 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=23.9
Q ss_pred ceeCCCCCCccEE------------eCCCCCCeeEEEeeEEEEEE
Q 032147 94 PKWCKTCSGGGLI------------YCSRCLGTGEYRYPMGFHFV 126 (146)
Q Consensus 94 ~~~C~~C~G~G~~------------~C~~C~G~G~~~~~~~~~v~ 126 (146)
.-.|+.|.|.|.+ +|+.|+|+.+..+..+++.+
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~ 1651 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYE 1651 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeC
Confidence 3458888888876 79999999887766444443
No 83
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=81.21 E-value=0.58 Score=37.83 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=10.1
Q ss_pred eCCCCCCccEEeCCCCCCeeEEE
Q 032147 96 WCKTCSGGGLIYCSRCLGTGEYR 118 (146)
Q Consensus 96 ~C~~C~G~G~~~C~~C~G~G~~~ 118 (146)
++-.-.|++.++|++|+|+|.+.
T Consensus 29 py~e~~g~~~vtCPTCqGtGrIP 51 (238)
T PF07092_consen 29 PYVEFTGRDSVTCPTCQGTGRIP 51 (238)
T ss_pred ccccccCCCCCcCCCCcCCccCC
Confidence 34444444444444444444443
No 84
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=81.12 E-value=1.2 Score=45.29 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=23.9
Q ss_pred EcCCCCCccEEEEEeeeCCCCc-ccceeCCCCCCccEE
Q 032147 70 DCYNCSGKGRTNKTHLTMLPRG-EWPKWCKTCSGGGLI 106 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~C~G~G~~ 106 (146)
.|+.|.|.|++.... .|+ -...+|+.|+|+.+.
T Consensus 1609 rC~~C~G~G~i~i~m----~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDR----AFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred CCCCCccCceEEEec----ccCCCcccCCCCCCCcCCC
Confidence 388888888887654 233 357889999998653
No 85
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=75.53 E-value=1.1 Score=36.35 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=19.3
Q ss_pred ccCccCcCceeeEcCCCCCccEEEEEe
Q 032147 58 PPCIVCHGTGRVDCYNCSGKGRTNKTH 84 (146)
Q Consensus 58 ~~C~~C~GsG~~~C~~C~G~G~~~~~~ 84 (146)
.++..-.|.+..+||.|.|+|++-..+
T Consensus 28 ~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 28 FPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred CccccccCCCCCcCCCCcCCccCCccc
Confidence 444445666778999999999986543
No 86
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=74.22 E-value=2.8 Score=23.90 Aligned_cols=11 Identities=36% Similarity=0.757 Sum_probs=5.4
Q ss_pred EcCCCCCccEE
Q 032147 70 DCYNCSGKGRT 80 (146)
Q Consensus 70 ~C~~C~G~G~~ 80 (146)
+||.|+..-.+
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 45555544333
No 87
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=73.08 E-value=4.6 Score=24.71 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=10.5
Q ss_pred eEcCCCCCccEEEE
Q 032147 69 VDCYNCSGKGRTNK 82 (146)
Q Consensus 69 ~~C~~C~G~G~~~~ 82 (146)
.+||.|+|....+.
T Consensus 2 kPCPfCGg~~~~~~ 15 (53)
T TIGR03655 2 KPCPFCGGADVYLR 15 (53)
T ss_pred CCCCCCCCcceeeE
Confidence 36899999888543
No 88
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=72.35 E-value=3.5 Score=39.06 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=22.0
Q ss_pred eEcCCCCCccEEEEEeeeCCCCc-ccceeCCCCCCccE
Q 032147 69 VDCYNCSGKGRTNKTHLTMLPRG-EWPKWCKTCSGGGL 105 (146)
Q Consensus 69 ~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~C~G~G~ 105 (146)
-.|..|.|.|.+.... .|+ ..-.+|+.|+|+-+
T Consensus 731 GRCe~C~GdG~ikIeM----~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEM----HFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEe----ccCCCceeeCCCcCCccc
Confidence 3577788888877664 222 34578888888754
No 89
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=69.90 E-value=1.9 Score=40.46 Aligned_cols=51 Identities=8% Similarity=-0.061 Sum_probs=40.1
Q ss_pred cceeecCCCceeeecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccC
Q 032147 4 LRVVRRATPSTVVRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPC 60 (146)
Q Consensus 4 ~~~~r~~~ps~~~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C 60 (146)
|+|.-..+.+......+.+-.-++.+.+.|+|++ +|+|+++.+++.+.+.|
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~dI~y~l~vtLEe------LY~G~tKkIKitR~V~~ 686 (871)
T TIGR03835 636 LPFISQPPASEYQEPNLDETNVNLVYEEEVPQIL------FFNNQIKEIKYTRHTVD 686 (871)
T ss_pred CCcccCCccccccCCCccccccceEEecccCHHH------HhCCCeEEEEEEEeecc
Confidence 4556666666666666666566778899999999 99999999999887765
No 90
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=67.61 E-value=2.2 Score=33.31 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=34.2
Q ss_pred cccCccCcCceeeEcCCCCCccEEEEEeeeCCCCc-ccceeCCCCCCccEE------eCCCCC
Q 032147 57 EPPCIVCHGTGRVDCYNCSGKGRTNKTHLTMLPRG-EWPKWCKTCSGGGLI------YCSRCL 112 (146)
Q Consensus 57 ~~~C~~C~GsG~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~C~G~G~~------~C~~C~ 112 (146)
...|..|.+.| ..|..|+....+. +|- .....|+.|+.-=.. .|++|.
T Consensus 142 V~~C~lC~~kG-fiCe~C~~~~~If-------PF~~~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 142 VYSCELCQQKG-FICEICNSDDIIF-------PFQIDTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHHhHHHHhCC-CCCccCCCCCCCC-------CCCCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence 45899999998 6899998885543 333 357889988765333 677774
No 91
>PRK04023 DNA polymerase II large subunit; Validated
Probab=67.10 E-value=3 Score=40.18 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=42.6
Q ss_pred CcccCccCcCcee-eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE-eCCCCCCeeEEEeeEEEEEE
Q 032147 56 PEPPCIVCHGTGR-VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI-YCSRCLGTGEYRYPMGFHFV 126 (146)
Q Consensus 56 ~~~~C~~C~GsG~-~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-~C~~C~G~G~~~~~~~~~v~ 126 (146)
....|+.|.-.+. ..|+.|+..-. ....|+.|.-.... .|+.|.-.-.....+++.++
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te-------------~i~fCP~CG~~~~~y~CPKCG~El~~~s~~~i~l~ 684 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTE-------------PVYRCPRCGIEVEEDECEKCGREPTPYSKRKIDLK 684 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCC-------------cceeCccccCcCCCCcCCCCCCCCCccceEEecHH
Confidence 4678999966654 89999997711 14579999776654 89999877776667777665
No 92
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=65.35 E-value=6.6 Score=25.08 Aligned_cols=41 Identities=27% Similarity=0.601 Sum_probs=23.7
Q ss_pred cccCccCcCc----e--e-eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE-eCCCCC
Q 032147 57 EPPCIVCHGT----G--R-VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI-YCSRCL 112 (146)
Q Consensus 57 ~~~C~~C~Gs----G--~-~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-~C~~C~ 112 (146)
...|.+|+.. + . ..||.| | ...+ .+|.+|+-.+.. .|++|.
T Consensus 7 ~~~CtSCg~~i~~~~~~~~F~CPnC-G--~~~I------------~RC~~CRk~~~~Y~CP~CG 55 (59)
T PRK14890 7 PPKCTSCGIEIAPREKAVKFLCPNC-G--EVII------------YRCEKCRKQSNPYTCPKCG 55 (59)
T ss_pred CccccCCCCcccCCCccCEeeCCCC-C--CeeE------------eechhHHhcCCceECCCCC
Confidence 4567777532 1 1 678888 2 2211 236667666666 777774
No 93
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.82 E-value=7.7 Score=36.21 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=35.9
Q ss_pred CcccCccCcCceeeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE--eCCCCCCe
Q 032147 56 PEPPCIVCHGTGRVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI--YCSRCLGT 114 (146)
Q Consensus 56 ~~~~C~~C~GsG~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~C~~C~G~ 114 (146)
....|..|.-. ..|+.|+..=..... .....|..|+-...+ .|+.|.+.
T Consensus 434 ~~l~C~~Cg~v--~~Cp~Cd~~lt~H~~--------~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDCGYI--AECPNCDSPLTLHKA--------TGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred ceeecccCCCc--ccCCCCCcceEEecC--------CCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 46889999544 789999977333221 246789999988666 89999877
No 94
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=61.25 E-value=9.3 Score=23.58 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=9.7
Q ss_pred eEcCCCCCccEEEEEe
Q 032147 69 VDCYNCSGKGRTNKTH 84 (146)
Q Consensus 69 ~~C~~C~G~G~~~~~~ 84 (146)
.+||.| |...+....
T Consensus 4 kPCPFC-G~~~~~~~~ 18 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQ 18 (61)
T ss_pred cCCCCC-CCcceEeec
Confidence 468888 666665544
No 95
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=61.22 E-value=2.7 Score=39.69 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=0.0
Q ss_pred CcccCccCcCcee-eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE-eCCCCCCeeEEEeeEEEEEE
Q 032147 56 PEPPCIVCHGTGR-VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI-YCSRCLGTGEYRYPMGFHFV 126 (146)
Q Consensus 56 ~~~~C~~C~GsG~-~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-~C~~C~G~G~~~~~~~~~v~ 126 (146)
....|+.|.-... ..|+.|+..=.. ...|+.|+-.-.. .|++|.-.......+++.++
T Consensus 654 ~~r~Cp~Cg~~t~~~~Cp~CG~~T~~-------------~~~Cp~C~~~~~~~~C~~C~~~~~~~~~~~i~l~ 713 (900)
T PF03833_consen 654 GRRRCPKCGKETFYNRCPECGSHTEP-------------VYVCPDCGIEVEEDECPKCGRETTSYSKQKIDLK 713 (900)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ecccCcccCCcchhhcCcccCCcccc-------------ceeccccccccCccccccccccCcccceeecCHH
Confidence 4677888865554 789998754333 3579999887555 99999888777777777776
No 96
>PF15616 TerY-C: TerY-C metal binding domain
Probab=61.08 E-value=19 Score=26.54 Aligned_cols=18 Identities=28% Similarity=0.689 Sum_probs=11.2
Q ss_pred CccEEeCCCCCCeeEEEe
Q 032147 102 GGGLIYCSRCLGTGEYRY 119 (146)
Q Consensus 102 G~G~~~C~~C~G~G~~~~ 119 (146)
|.+.+.|+.|.-+|....
T Consensus 102 g~~~~~CPwCg~~g~~~~ 119 (131)
T PF15616_consen 102 GEGEVTCPWCGNEGSFGA 119 (131)
T ss_pred CCCCEECCCCCCeeeecc
Confidence 455567777766665543
No 97
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.91 E-value=8.3 Score=34.16 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=34.8
Q ss_pred CcccCccCcCceeeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE--eCCCCCCee
Q 032147 56 PEPPCIVCHGTGRVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI--YCSRCLGTG 115 (146)
Q Consensus 56 ~~~~C~~C~GsG~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~C~~C~G~G 115 (146)
....|..|.-. ..|+.|++.=..... ...-.|..|+-+-.. .|+.|.+.-
T Consensus 212 ~~~~C~~Cg~~--~~C~~C~~~l~~h~~--------~~~l~Ch~Cg~~~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 212 KNLLCRSCGYI--LCCPNCDVSLTYHKK--------EGKLRCHYCGYQEPIPKTCPQCGSED 263 (505)
T ss_pred CeeEhhhCcCc--cCCCCCCCceEEecC--------CCeEEcCCCcCcCCCCCCCCCCCCCe
Confidence 35689998555 789999875333221 125689999887766 899997753
No 98
>PRK05978 hypothetical protein; Provisional
Probab=58.80 E-value=5.1 Score=30.14 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=13.7
Q ss_pred EcCCCCCccEEEEEeeeCCCCcccceeCCCCC
Q 032147 70 DCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCS 101 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 101 (146)
+||.| |+|.... +++.+...|+.|+
T Consensus 35 rCP~C-G~G~LF~------g~Lkv~~~C~~CG 59 (148)
T PRK05978 35 RCPAC-GEGKLFR------AFLKPVDHCAACG 59 (148)
T ss_pred cCCCC-CCCcccc------cccccCCCccccC
Confidence 45555 4555542 3445566677765
No 99
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=57.24 E-value=8.6 Score=21.77 Aligned_cols=7 Identities=43% Similarity=1.160 Sum_probs=3.2
Q ss_pred EcCCCCC
Q 032147 70 DCYNCSG 76 (146)
Q Consensus 70 ~C~~C~G 76 (146)
.|+.|+-
T Consensus 4 ~Cp~C~~ 10 (36)
T PF13717_consen 4 TCPNCQA 10 (36)
T ss_pred ECCCCCC
Confidence 3444443
No 100
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=57.11 E-value=14 Score=28.81 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=33.7
Q ss_pred EcCCCCCccEEEEEeee-CCCC--c-ccceeCCCCCCccEE-eCCCCCCeeEEEeeEEEEEEeCCCCC
Q 032147 70 DCYNCSGKGRTNKTHLT-MLPR--G-EWPKWCKTCSGGGLI-YCSRCLGTGEYRYPMGFHFVKKSDSD 132 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~~~-~~g~--~-~~~~~C~~C~G~G~~-~C~~C~G~G~~~~~~~~~v~~~~~~~ 132 (146)
.|+.|++.|........ .|-| . .+...|+.|+=+-.. .-. |.+. .+++++++.+-+|
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~-----g~~~-p~r~~l~V~~~~D 63 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTL-----GAKE-PKRYILKIDDEAD 63 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEEC-----CCCC-CEEEEEEECChhc
Confidence 58999988887654433 3322 2 367889999877554 322 2122 2366777666554
No 101
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=56.74 E-value=3 Score=28.97 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=8.3
Q ss_pred eEcCCCCCccEEE
Q 032147 69 VDCYNCSGKGRTN 81 (146)
Q Consensus 69 ~~C~~C~G~G~~~ 81 (146)
..|..|+|.|...
T Consensus 6 ~~c~~c~g~g~al 18 (95)
T PF03589_consen 6 DSCRRCAGDGAAL 18 (95)
T ss_pred CCcCccCCcceec
Confidence 4566777777554
No 102
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=56.33 E-value=15 Score=27.90 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=31.6
Q ss_pred cCCCCCccEEEEEeeeCCCCc----ccceeCCCCCCccEE-eCCCCCCeeEEEeeEEEEEEeCCCCC
Q 032147 71 CYNCSGKGRTNKTHLTMLPRG----EWPKWCKTCSGGGLI-YCSRCLGTGEYRYPMGFHFVKKSDSD 132 (146)
Q Consensus 71 C~~C~G~G~~~~~~~~~~g~~----~~~~~C~~C~G~G~~-~C~~C~G~G~~~~~~~~~v~~~~~~~ 132 (146)
||.|++.+........-.++| .+...|+.|+=+-.. +- .|.+.. .++++++.+-+|
T Consensus 1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~-----~~~~~p-~r~~l~V~~~~D 61 (163)
T TIGR00340 1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYRSTDVYQ-----LEEKEP-VRYIIKIENEDD 61 (163)
T ss_pred CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCchhheeE-----cCCcCC-EEEEEEECChhh
Confidence 889998876553322222333 367889999876543 21 122222 566666666554
No 103
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=55.67 E-value=6.6 Score=38.75 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=40.0
Q ss_pred cccCccCcCcee-eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCc------cEEeCCCCCCeeEEEeeEEEEEE
Q 032147 57 EPPCIVCHGTGR-VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGG------GLIYCSRCLGTGEYRYPMGFHFV 126 (146)
Q Consensus 57 ~~~C~~C~GsG~-~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~------G~~~C~~C~G~G~~~~~~~~~v~ 126 (146)
...|+.|..... ..|+.|+..=.. ...|+.|+.. +...|+.|...-.....+++.++
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~-------------vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~ 730 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEP-------------VYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVK 730 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCC-------------ceeCccCCCccCCCccccccCCCCCCcccccceEEecHH
Confidence 678999976543 689999866311 3479999884 22389999877666666666665
No 104
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=54.48 E-value=15 Score=20.55 Aligned_cols=8 Identities=38% Similarity=0.987 Sum_probs=4.4
Q ss_pred EcCCCCCc
Q 032147 70 DCYNCSGK 77 (146)
Q Consensus 70 ~C~~C~G~ 77 (146)
.|+.|+-.
T Consensus 4 ~CP~C~~~ 11 (38)
T TIGR02098 4 QCPNCKTS 11 (38)
T ss_pred ECCCCCCE
Confidence 46666544
No 105
>PF14353 CpXC: CpXC protein
Probab=52.84 E-value=13 Score=26.55 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=20.6
Q ss_pred eEcCCCCCccEEEEEeeeCCCC----------c-ccceeCCCCCCccEE
Q 032147 69 VDCYNCSGKGRTNKTHLTMLPR----------G-EWPKWCKTCSGGGLI 106 (146)
Q Consensus 69 ~~C~~C~G~G~~~~~~~~~~g~----------~-~~~~~C~~C~G~G~~ 106 (146)
.+||.|+-..........-... . -...+||.|+....+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 3677888777765443111100 0 125667777777665
No 106
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=52.44 E-value=21 Score=27.06 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=22.7
Q ss_pred EcCCCCCccEEEEEeeeCCCC--c-ccceeCCCCCCccEE
Q 032147 70 DCYNCSGKGRTNKTHLTMLPR--G-EWPKWCKTCSGGGLI 106 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~~~~~g~--~-~~~~~C~~C~G~G~~ 106 (146)
.|+.|+..|......-..|-| . .+...|+.|+=+-..
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~e 41 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNNE 41 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccce
Confidence 588898888754332222222 1 367889999877554
No 107
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=52.09 E-value=11 Score=19.68 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=2.7
Q ss_pred eeCCCC
Q 032147 95 KWCKTC 100 (146)
Q Consensus 95 ~~C~~C 100 (146)
..||+|
T Consensus 17 f~CPnC 22 (24)
T PF07754_consen 17 FPCPNC 22 (24)
T ss_pred EeCCCC
Confidence 344444
No 108
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=51.83 E-value=8.2 Score=22.62 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=7.2
Q ss_pred eEcCCCCCccEEE
Q 032147 69 VDCYNCSGKGRTN 81 (146)
Q Consensus 69 ~~C~~C~G~G~~~ 81 (146)
.+||.|.|+.+..
T Consensus 4 ~pCP~CGG~DrFr 16 (40)
T PF08273_consen 4 GPCPICGGKDRFR 16 (40)
T ss_dssp E--TTTT-TTTEE
T ss_pred CCCCCCcCccccc
Confidence 4688888877665
No 109
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=51.21 E-value=15 Score=27.52 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=6.6
Q ss_pred eCCCCCCeeEEE
Q 032147 107 YCSRCLGTGEYR 118 (146)
Q Consensus 107 ~C~~C~G~G~~~ 118 (146)
+|+.|++..+.+
T Consensus 132 ~Cp~C~~~~F~R 143 (146)
T PF07295_consen 132 PCPKCGHTEFTR 143 (146)
T ss_pred CCCCCCCCeeee
Confidence 555555555544
No 110
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=51.16 E-value=22 Score=26.80 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=19.8
Q ss_pred eEcCCCCCccEEEEEeeeCCCCc----ccceeCCCCCCccEE
Q 032147 69 VDCYNCSGKGRTNKTHLTMLPRG----EWPKWCKTCSGGGLI 106 (146)
Q Consensus 69 ~~C~~C~G~G~~~~~~~~~~g~~----~~~~~C~~C~G~G~~ 106 (146)
..|+.|+..|......-.. ++| .+...|+.|+=+-..
T Consensus 2 s~Cp~C~~~~~~~~~~~~I-P~F~evii~sf~C~~CGyk~~e 42 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDI-PYFKEVIIMSFECEHCGYKNNE 42 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEE-TTTEEEEEEEEE-TTT--EEEE
T ss_pred CcCCCCCCCcEEEEEEEcC-CCCceEEEEEeECCCCCCEeee
Confidence 3699999999765432222 223 356788888766544
No 111
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=49.54 E-value=23 Score=19.77 Aligned_cols=12 Identities=42% Similarity=1.060 Sum_probs=7.1
Q ss_pred EcCCCCCccEEE
Q 032147 70 DCYNCSGKGRTN 81 (146)
Q Consensus 70 ~C~~C~G~G~~~ 81 (146)
.|..|++.|.+.
T Consensus 5 ~C~~C~~~~i~~ 16 (33)
T PF08792_consen 5 KCSKCGGNGIVN 16 (33)
T ss_pred EcCCCCCCeEEE
Confidence 466666666553
No 112
>PRK05580 primosome assembly protein PriA; Validated
Probab=48.46 E-value=18 Score=33.27 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=34.7
Q ss_pred cccCccCcCceeeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE--eCCCCCCee
Q 032147 57 EPPCIVCHGTGRVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI--YCSRCLGTG 115 (146)
Q Consensus 57 ~~~C~~C~GsG~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~C~~C~G~G 115 (146)
...|..|.-. ..|+.|++. ..+... ...-.|..|+-+-.. .|+.|.+.-
T Consensus 381 ~~~C~~Cg~~--~~C~~C~~~-l~~h~~-------~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 381 FLLCRDCGWV--AECPHCDAS-LTLHRF-------QRRLRCHHCGYQEPIPKACPECGSTD 431 (679)
T ss_pred ceEhhhCcCc--cCCCCCCCc-eeEECC-------CCeEECCCCcCCCCCCCCCCCCcCCe
Confidence 5789999555 689999983 333221 135689999988665 899997764
No 113
>PRK14873 primosome assembly protein PriA; Provisional
Probab=47.30 E-value=20 Score=33.14 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=33.6
Q ss_pred CcccCccCcCceeeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE-eCCCCCCee
Q 032147 56 PEPPCIVCHGTGRVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI-YCSRCLGTG 115 (146)
Q Consensus 56 ~~~~C~~C~GsG~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-~C~~C~G~G 115 (146)
....|..|.-. ..|+.|++.=...... ..-.|..|+-.-.- .|+.|.+.-
T Consensus 382 p~l~C~~Cg~~--~~C~~C~~~L~~h~~~--------~~l~Ch~CG~~~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 382 PSLACARCRTP--ARCRHCTGPLGLPSAG--------GTPRCRWCGRAAPDWRCPRCGSDR 432 (665)
T ss_pred CeeEhhhCcCe--eECCCCCCceeEecCC--------CeeECCCCcCCCcCccCCCCcCCc
Confidence 35789988544 7899999764443221 25679999875422 899997663
No 114
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=46.58 E-value=15 Score=21.10 Aligned_cols=6 Identities=33% Similarity=1.082 Sum_probs=4.0
Q ss_pred cCCCCC
Q 032147 71 CYNCSG 76 (146)
Q Consensus 71 C~~C~G 76 (146)
||.|+.
T Consensus 2 CP~C~~ 7 (41)
T PF13453_consen 2 CPRCGT 7 (41)
T ss_pred cCCCCc
Confidence 677765
No 115
>PRK11032 hypothetical protein; Provisional
Probab=44.03 E-value=26 Score=26.70 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=6.6
Q ss_pred eCCCCCCeeEEE
Q 032147 107 YCSRCLGTGEYR 118 (146)
Q Consensus 107 ~C~~C~G~G~~~ 118 (146)
+|+.|++.-+.+
T Consensus 144 pCp~C~~~~F~R 155 (160)
T PRK11032 144 LCPKCGHDQFQR 155 (160)
T ss_pred CCCCCCCCeeee
Confidence 555555555544
No 116
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=42.87 E-value=19 Score=25.41 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=15.8
Q ss_pred EeCeEEEEEe-CCcccCccCcCcee-----eEcCCCCCccE
Q 032147 45 ESNVRKLARK-KPEPPCIVCHGTGR-----VDCYNCSGKGR 79 (146)
Q Consensus 45 ~~G~~~~i~~-~~~~~C~~C~GsG~-----~~C~~C~G~G~ 79 (146)
..|.+..|.. +....|..|.-... ..||.|++...
T Consensus 57 ~e~a~L~Ie~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 57 LEGAELEIEEVPARARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp TTT-EEEEEEE--EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred ccCCEEEEEecCCcEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 3455544433 34666777755553 34666666554
No 117
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=42.52 E-value=26 Score=24.77 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=9.6
Q ss_pred EeCeEEEEEeC-CcccCccCc
Q 032147 45 ESNVRKLARKK-PEPPCIVCH 64 (146)
Q Consensus 45 ~~G~~~~i~~~-~~~~C~~C~ 64 (146)
..|.+..|... ....|..|.
T Consensus 57 ~egA~L~I~~vp~~~~C~~Cg 77 (113)
T PRK12380 57 AQGCDLHIVYKPAQAWCWDCS 77 (113)
T ss_pred cCCCEEEEEeeCcEEEcccCC
Confidence 44555554333 345555554
No 118
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=41.47 E-value=31 Score=24.49 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=8.9
Q ss_pred EeCeEEEEEeC-CcccCccC
Q 032147 45 ESNVRKLARKK-PEPPCIVC 63 (146)
Q Consensus 45 ~~G~~~~i~~~-~~~~C~~C 63 (146)
..|.+..|... ....|..|
T Consensus 57 ~ega~L~I~~~p~~~~C~~C 76 (115)
T TIGR00100 57 AEGAKLNIEDEPVECECEDC 76 (115)
T ss_pred cCCCEEEEEeeCcEEEcccC
Confidence 44555554433 34445444
No 119
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=40.88 E-value=25 Score=22.51 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=10.6
Q ss_pred eCCCCCCccEE-eCCCCC
Q 032147 96 WCKTCSGGGLI-YCSRCL 112 (146)
Q Consensus 96 ~C~~C~G~G~~-~C~~C~ 112 (146)
+|.+|+-.|.. .|+.|.
T Consensus 40 Rc~~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 40 RCAKCRKLGNPYRCPKCG 57 (61)
T ss_pred hhhhHHHcCCceECCCcC
Confidence 46666666666 677664
No 120
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=39.01 E-value=29 Score=29.50 Aligned_cols=22 Identities=36% Similarity=0.925 Sum_probs=12.0
Q ss_pred ccCccCcCceeeEcCCCCCccEEEE
Q 032147 58 PPCIVCHGTGRVDCYNCSGKGRTNK 82 (146)
Q Consensus 58 ~~C~~C~GsG~~~C~~C~G~G~~~~ 82 (146)
+.|..|.|.| |+.|++.|++..
T Consensus 261 v~~~~~~g~g---c~~ck~~~WiEi 282 (339)
T PRK00488 261 VSCFKCGGKG---CRVCKGTGWLEI 282 (339)
T ss_pred EEEeccCCCc---ccccCCCCceEE
Confidence 4455555554 555556665443
No 121
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=38.24 E-value=89 Score=19.64 Aligned_cols=14 Identities=29% Similarity=0.505 Sum_probs=7.6
Q ss_pred eEcCCCCCccEEEE
Q 032147 69 VDCYNCSGKGRTNK 82 (146)
Q Consensus 69 ~~C~~C~G~G~~~~ 82 (146)
..||.|+++=+...
T Consensus 5 i~CP~CgnKTR~ki 18 (55)
T PF14205_consen 5 ILCPICGNKTRLKI 18 (55)
T ss_pred EECCCCCCccceee
Confidence 45666665555443
No 122
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=37.19 E-value=25 Score=20.21 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=7.8
Q ss_pred eEcCCCCCccEEE
Q 032147 69 VDCYNCSGKGRTN 81 (146)
Q Consensus 69 ~~C~~C~G~G~~~ 81 (146)
.+||.|.|+....
T Consensus 4 ~pCP~CGG~DrFr 16 (37)
T smart00778 4 GPCPNCGGSDRFR 16 (37)
T ss_pred cCCCCCCCccccc
Confidence 3567777665544
No 123
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=36.73 E-value=40 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=19.7
Q ss_pred EcCCCCCcc-EEEEEeeeCCCCc-ccceeCCCCCCc
Q 032147 70 DCYNCSGKG-RTNKTHLTMLPRG-EWPKWCKTCSGG 103 (146)
Q Consensus 70 ~C~~C~G~G-~~~~~~~~~~g~~-~~~~~C~~C~G~ 103 (146)
.||.|...- .+.....+.+|.. .....|+.|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 588888877 4444443444432 234667777665
No 124
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=35.71 E-value=27 Score=24.53 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=8.8
Q ss_pred eEcCCCCCccEEEEE
Q 032147 69 VDCYNCSGKGRTNKT 83 (146)
Q Consensus 69 ~~C~~C~G~G~~~~~ 83 (146)
..|.-|.++|+....
T Consensus 36 daCeiC~~~GY~q~g 50 (102)
T PF10080_consen 36 DACEICGPKGYYQEG 50 (102)
T ss_pred EeccccCCCceEEEC
Confidence 456666666666443
No 125
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=33.98 E-value=18 Score=17.30 Aligned_cols=10 Identities=40% Similarity=0.896 Sum_probs=4.7
Q ss_pred CCCCCCccEE
Q 032147 97 CKTCSGGGLI 106 (146)
Q Consensus 97 C~~C~G~G~~ 106 (146)
|..|+..|.+
T Consensus 3 C~~C~~~GH~ 12 (18)
T PF00098_consen 3 CFNCGEPGHI 12 (18)
T ss_dssp CTTTSCSSSC
T ss_pred CcCCCCcCcc
Confidence 4445444443
No 126
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=33.71 E-value=28 Score=28.66 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=22.2
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCc
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPE 57 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~ 57 (146)
++.+.+.|+|+| ++.|..+.+.+.+.
T Consensus 119 di~~~v~isLee------~~~G~~k~i~~~~~ 144 (306)
T PRK10266 119 DIEIEVAVFLEE------TLTEHKRTISYNLP 144 (306)
T ss_pred ceEEEEEEEHHH------hcCCceEEEEEecc
Confidence 567889999999 99999999887654
No 127
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=33.34 E-value=34 Score=24.60 Aligned_cols=16 Identities=31% Similarity=0.953 Sum_probs=11.2
Q ss_pred CCCCCCccEE---eCCCCC
Q 032147 97 CKTCSGGGLI---YCSRCL 112 (146)
Q Consensus 97 C~~C~G~G~~---~C~~C~ 112 (146)
||.|++.=.+ .|+.|+
T Consensus 1 CPvCg~~l~vt~l~C~~C~ 19 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCG 19 (113)
T ss_pred CCCCCCceEEEEEEcCCCC
Confidence 6777766665 788875
No 128
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=32.06 E-value=22 Score=30.91 Aligned_cols=13 Identities=38% Similarity=0.979 Sum_probs=7.5
Q ss_pred ceeCCCCCCccEE
Q 032147 94 PKWCKTCSGGGLI 106 (146)
Q Consensus 94 ~~~C~~C~G~G~~ 106 (146)
..+||.|+|+|++
T Consensus 390 ~~~Cp~C~G~G~v 402 (414)
T TIGR00757 390 GTVCPHCSGTGIV 402 (414)
T ss_pred cCCCCCCcCeeEE
Confidence 3456666666654
No 129
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=29.81 E-value=86 Score=20.66 Aligned_cols=21 Identities=24% Similarity=0.822 Sum_probs=10.1
Q ss_pred ceeCCCCCCccEE---------eCCCCCCe
Q 032147 94 PKWCKTCSGGGLI---------YCSRCLGT 114 (146)
Q Consensus 94 ~~~C~~C~G~G~~---------~C~~C~G~ 114 (146)
...||.|+-.=.+ .|..|+|-
T Consensus 30 ~a~CPdC~~~Le~LkACGAvdYFC~~c~gL 59 (70)
T PF07191_consen 30 EAFCPDCGQPLEVLKACGAVDYFCNHCHGL 59 (70)
T ss_dssp EEE-TTT-SB-EEEEETTEEEEE-TTTT-E
T ss_pred cccCCCcccHHHHHHHhcccceeeccCCce
Confidence 5667777765332 78877653
No 130
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=28.46 E-value=43 Score=19.30 Aligned_cols=9 Identities=44% Similarity=1.014 Sum_probs=5.9
Q ss_pred EcCCCCCcc
Q 032147 70 DCYNCSGKG 78 (146)
Q Consensus 70 ~C~~C~G~G 78 (146)
.||.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 477777655
No 131
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.17 E-value=44 Score=29.61 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=25.7
Q ss_pred EeCCcccCccCcCce-------eeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCc
Q 032147 53 RKKPEPPCIVCHGTG-------RVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGG 103 (146)
Q Consensus 53 ~~~~~~~C~~C~GsG-------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 103 (146)
..-....|+.|.+.= ...|+.|+-+- .....||.|++.
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~-------------~~~~~Cp~C~s~ 262 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQE-------------PIPKTCPQCGSE 262 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcC-------------CCCCCCCCCCCC
Confidence 344678899998542 36799887221 125789999875
No 132
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=28.11 E-value=1.1e+02 Score=17.50 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=10.6
Q ss_pred EcCCCCCccEEEEEe
Q 032147 70 DCYNCSGKGRTNKTH 84 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~ 84 (146)
.|+.|+....+....
T Consensus 2 ~Cp~C~~~~a~~~q~ 16 (40)
T smart00440 2 PCPKCGNREATFFQL 16 (40)
T ss_pred cCCCCCCCeEEEEEE
Confidence 588888777776543
No 133
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.07 E-value=67 Score=26.97 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=6.0
Q ss_pred eCCCCCCeeE
Q 032147 107 YCSRCLGTGE 116 (146)
Q Consensus 107 ~C~~C~G~G~ 116 (146)
.|..|++.=.
T Consensus 254 ~C~~C~~YlK 263 (309)
T PRK03564 254 SCGDCGTYLK 263 (309)
T ss_pred ecccccccce
Confidence 6777765433
No 134
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=27.49 E-value=65 Score=25.27 Aligned_cols=46 Identities=33% Similarity=0.712 Sum_probs=28.8
Q ss_pred eCCcccCccCcCcee--eEcC-----CCCCccEEEEEeeeCCCCcccceeCCCCCCccEE
Q 032147 54 KKPEPPCIVCHGTGR--VDCY-----NCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 54 ~~~~~~C~~C~GsG~--~~C~-----~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
......|..|...|. ..|| .|+=.|-.... . .....|..|+-.|.+
T Consensus 57 ~~~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s~~-----C--~~~~~C~~Cg~~GH~ 109 (190)
T COG5082 57 REENPVCFNCGQNGHLRRDCPHSICYNCSWDGHRSNH-----C--PKPKKCYNCGETGHL 109 (190)
T ss_pred cccccccchhcccCcccccCChhHhhhcCCCCccccc-----C--CcccccccccccCcc
Confidence 346789999987775 5566 77434443321 0 123678888888876
No 135
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=27.46 E-value=40 Score=21.54 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=4.9
Q ss_pred eEcCCCCCccEE
Q 032147 69 VDCYNCSGKGRT 80 (146)
Q Consensus 69 ~~C~~C~G~G~~ 80 (146)
+.|..|+.+..+
T Consensus 31 IlCNDC~~~s~v 42 (61)
T PF14599_consen 31 ILCNDCNAKSEV 42 (61)
T ss_dssp EEESSS--EEEE
T ss_pred EECCCCCCccce
Confidence 445555554443
No 136
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.34 E-value=42 Score=22.80 Aligned_cols=7 Identities=29% Similarity=0.486 Sum_probs=3.7
Q ss_pred EcCCCCC
Q 032147 70 DCYNCSG 76 (146)
Q Consensus 70 ~C~~C~G 76 (146)
.||.|+-
T Consensus 3 lCP~C~v 9 (88)
T COG3809 3 LCPICGV 9 (88)
T ss_pred ccCcCCc
Confidence 3566653
No 137
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=27.29 E-value=37 Score=22.07 Aligned_cols=7 Identities=29% Similarity=0.904 Sum_probs=2.8
Q ss_pred eCCCCCC
Q 032147 107 YCSRCLG 113 (146)
Q Consensus 107 ~C~~C~G 113 (146)
.|+.|+.
T Consensus 31 ~C~gC~~ 37 (66)
T PF05180_consen 31 QCPGCKN 37 (66)
T ss_dssp E-TTS--
T ss_pred ECCCCcc
Confidence 6777753
No 138
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=27.15 E-value=16 Score=25.53 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=29.3
Q ss_pred CcccCccCcCceeeEcCCCCCccEEEEEee-eCCCCc-ccceeCCCCCCccEE---eCCCCC
Q 032147 56 PEPPCIVCHGTGRVDCYNCSGKGRTNKTHL-TMLPRG-EWPKWCKTCSGGGLI---YCSRCL 112 (146)
Q Consensus 56 ~~~~C~~C~GsG~~~C~~C~G~G~~~~~~~-~~~g~~-~~~~~C~~C~G~G~~---~C~~C~ 112 (146)
.-..|..|.|. |+.|..-=+.....+ .-...| ..+..|--|++-|.. .|..|-
T Consensus 19 ~G~LCEkCDgk----C~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV~d~~yc~ect 76 (110)
T KOG1705|consen 19 IGRLCEKCDGK----CVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGVSDAYYCKECT 76 (110)
T ss_pred hhhhHHhcCCc----ccccccccccceeeeeehhcCCccccCceEEecCCcccchHHHHHHH
Confidence 35678888776 666665433222111 001112 356678888888877 566664
No 139
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=26.84 E-value=97 Score=17.60 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=9.5
Q ss_pred EcCCCCCccEEEEEee
Q 032147 70 DCYNCSGKGRTNKTHL 85 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~~ 85 (146)
+|+.|+.........|
T Consensus 2 ~Cp~Cg~~~a~~~~~Q 17 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQ 17 (39)
T ss_dssp --SSS-SSEEEEEEES
T ss_pred CCcCCCCCeEEEEEee
Confidence 6888888887776543
No 140
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=26.69 E-value=63 Score=20.95 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=7.2
Q ss_pred eEcCCCCCccEEE
Q 032147 69 VDCYNCSGKGRTN 81 (146)
Q Consensus 69 ~~C~~C~G~G~~~ 81 (146)
++||.|...=..+
T Consensus 7 KPCPFCG~~~~~v 19 (64)
T PRK09710 7 KPCPFCGCPSVTV 19 (64)
T ss_pred cCCCCCCCceeEE
Confidence 4566666554444
No 141
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.36 E-value=29 Score=17.97 Aligned_cols=8 Identities=25% Similarity=1.082 Sum_probs=3.8
Q ss_pred eeCCCCCC
Q 032147 95 KWCKTCSG 102 (146)
Q Consensus 95 ~~C~~C~G 102 (146)
..|+.|+-
T Consensus 3 ~~Cp~Cg~ 10 (26)
T PF13248_consen 3 MFCPNCGA 10 (26)
T ss_pred CCCcccCC
Confidence 34555544
No 142
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=26.28 E-value=53 Score=23.85 Aligned_cols=40 Identities=30% Similarity=0.689 Sum_probs=20.1
Q ss_pred EcCCCCCccEEEEEe-eeCCCCcccceeCCCCCCccEE--eCCC
Q 032147 70 DCYNCSGKGRTNKTH-LTMLPRGEWPKWCKTCSGGGLI--YCSR 110 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~-~~~~g~~~~~~~C~~C~G~G~~--~C~~ 110 (146)
.|..|+..|-....= ....+ ......|..|...|.. .|+.
T Consensus 79 ~C~~Cg~~GH~~~~C~~~~~~-~~~~~~C~~Cg~~gH~~~~C~~ 121 (148)
T PTZ00368 79 SCYNCGQTGHISRECPNRAKG-GAARRACYNCGGEGHISRDCPN 121 (148)
T ss_pred ccCcCCCCCcccccCCCcccc-cccchhhcccCcCCcchhcCCC
Confidence 466666666554320 00000 1123467777777776 5554
No 143
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.14 E-value=74 Score=18.32 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=13.3
Q ss_pred EcCCCCCccEEEEEeeeCCCCcccceeCCCCCC
Q 032147 70 DCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSG 102 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 102 (146)
.|..|+..=.+..... - .....||.|++
T Consensus 7 ~C~~Cg~~fe~~~~~~----~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSIS----E-DDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcC----C-CCCCcCCCCCC
Confidence 4666655544443210 0 13456666665
No 144
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=25.55 E-value=47 Score=21.37 Aligned_cols=15 Identities=7% Similarity=0.109 Sum_probs=11.0
Q ss_pred eEEEeeecCcceeeeEeCeEE
Q 032147 30 PLSLSFKKPSWVVRTESNVRK 50 (146)
Q Consensus 30 ~l~isl~ep~~~~~~~~G~~~ 50 (146)
.++|+|+| +.+|..+
T Consensus 30 RFeIsLeD------l~~GE~V 44 (67)
T COG5216 30 RFEISLED------LRNGEVV 44 (67)
T ss_pred EeEEEHHH------hhCCceE
Confidence 47788888 7777655
No 145
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=25.29 E-value=78 Score=17.95 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=7.4
Q ss_pred eEcCCCCCccEE
Q 032147 69 VDCYNCSGKGRT 80 (146)
Q Consensus 69 ~~C~~C~G~G~~ 80 (146)
+.||.|+..-.+
T Consensus 6 v~CP~C~s~~~v 17 (36)
T PF03811_consen 6 VHCPRCQSTEGV 17 (36)
T ss_pred eeCCCCCCCCcc
Confidence 457777766633
No 146
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=24.93 E-value=51 Score=23.05 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=6.1
Q ss_pred CccEEeCCCC
Q 032147 102 GGGLIYCSRC 111 (146)
Q Consensus 102 G~G~~~C~~C 111 (146)
|.+.+.|+.|
T Consensus 39 ~~~h~~C~~C 48 (99)
T PRK14892 39 NIAIITCGNC 48 (99)
T ss_pred CcceEECCCC
Confidence 4555566666
No 147
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=24.69 E-value=48 Score=30.61 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=28.4
Q ss_pred ccCccCcCc---eeeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE---eCCCCCC
Q 032147 58 PPCIVCHGT---GRVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI---YCSRCLG 113 (146)
Q Consensus 58 ~~C~~C~Gs---G~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~---~C~~C~G 113 (146)
..|+.|... ++.-|+.|+.+-. ...|+.|+-.=.. .|+.|.-
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCCC--------------CCcCCCCCCCCCcccccccccCC
Confidence 479999544 4578999954321 2469999877333 8999953
No 148
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=24.67 E-value=65 Score=18.07 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=10.2
Q ss_pred cCCCCCccEEEEEeeeCCCCcccceeCCCCC
Q 032147 71 CYNCSGKGRTNKTHLTMLPRGEWPKWCKTCS 101 (146)
Q Consensus 71 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 101 (146)
|+.|.+.=..... .|--..+..|+.|+
T Consensus 3 C~~CG~~l~~~ip----~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 3 CPQCGGPLERRIP----EGDDRERLVCPACG 29 (34)
T ss_dssp -TTT--B-EEE------TT-SS-EEEETTTT
T ss_pred cccccChhhhhcC----CCCCccceECCCCC
Confidence 6777766222221 12234466677764
No 149
>PRK14299 chaperone protein DnaJ; Provisional
Probab=23.77 E-value=41 Score=27.56 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.1
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKK 55 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~ 55 (146)
++.+.+.|+|+| ++.|.++.+.+.
T Consensus 131 dl~~~l~isL~e------a~~G~~~~i~l~ 154 (291)
T PRK14299 131 DLEAELPLTLEE------AYRGGEKVVEVA 154 (291)
T ss_pred CEEEEEEecHHH------HhCCCeEEEeeC
Confidence 567899999999 999998887664
No 150
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=23.45 E-value=25 Score=27.39 Aligned_cols=23 Identities=30% Similarity=0.787 Sum_probs=10.7
Q ss_pred ccCccCcCcee--eEcCCCCCccEE
Q 032147 58 PPCIVCHGTGR--VDCYNCSGKGRT 80 (146)
Q Consensus 58 ~~C~~C~GsG~--~~C~~C~G~G~~ 80 (146)
..|..|.+.-+ .+||.|+..|..
T Consensus 163 ilCtvCe~r~w~g~~CPKCGr~G~p 187 (200)
T PF12387_consen 163 ILCTVCEGREWKGGNCPKCGRHGKP 187 (200)
T ss_pred EEEeeeecCccCCCCCCcccCCCCC
Confidence 34455544433 345555544443
No 151
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=23.19 E-value=51 Score=17.77 Aligned_cols=6 Identities=33% Similarity=1.387 Sum_probs=2.6
Q ss_pred eeCCCC
Q 032147 95 KWCKTC 100 (146)
Q Consensus 95 ~~C~~C 100 (146)
..|+.|
T Consensus 22 r~C~~C 27 (32)
T PF09297_consen 22 RRCPSC 27 (32)
T ss_dssp EEESSS
T ss_pred eECCCC
Confidence 344444
No 152
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.17 E-value=1e+02 Score=21.89 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=9.0
Q ss_pred eCeEEEEEeC-CcccCccCc
Q 032147 46 SNVRKLARKK-PEPPCIVCH 64 (146)
Q Consensus 46 ~G~~~~i~~~-~~~~C~~C~ 64 (146)
.|.+..|... ....|..|.
T Consensus 59 ega~L~Ie~vp~~~~C~~Cg 78 (117)
T PRK00564 59 KDAILDIVDEKVELECKDCS 78 (117)
T ss_pred CCCEEEEEecCCEEEhhhCC
Confidence 4555544332 345555554
No 153
>PRK00420 hypothetical protein; Validated
Probab=23.16 E-value=60 Score=23.24 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=10.0
Q ss_pred eeCCCCCC------ccEEeCCCCC
Q 032147 95 KWCKTCSG------GGLIYCSRCL 112 (146)
Q Consensus 95 ~~C~~C~G------~G~~~C~~C~ 112 (146)
..||.|+. .|...|+.|.
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg 47 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHG 47 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCC
Confidence 45555554 2444677774
No 154
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=23.04 E-value=1.2e+02 Score=16.99 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=12.5
Q ss_pred CCCCCCeeEEEeeEEEEEEe
Q 032147 108 CSRCLGTGEYRYPMGFHFVK 127 (146)
Q Consensus 108 C~~C~G~G~~~~~~~~~v~~ 127 (146)
|+.|.|.-.....+.+.+.+
T Consensus 1 C~~C~~~~~~~~~~~~~~~~ 20 (46)
T TIGR03831 1 CPICGGEELEGKTTTETYEY 20 (46)
T ss_pred CCCCCCceecceEEEEEEEe
Confidence 77785555555555666665
No 155
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=22.90 E-value=54 Score=17.76 Aligned_cols=16 Identities=31% Similarity=0.949 Sum_probs=7.5
Q ss_pred eCCCCCCccEEeCCCC
Q 032147 96 WCKTCSGGGLIYCSRC 111 (146)
Q Consensus 96 ~C~~C~G~G~~~C~~C 111 (146)
.|..|+..++-.|+.|
T Consensus 4 ~C~vC~~~~kY~Cp~C 19 (30)
T PF04438_consen 4 LCSVCGNPAKYRCPRC 19 (30)
T ss_dssp EETSSSSEESEE-TTT
T ss_pred CCccCcCCCEEECCCc
Confidence 4555555444455555
No 156
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=22.59 E-value=73 Score=22.98 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=14.6
Q ss_pred EEeCCCCCCe-eEEEeeEEEEEEeCCCCCC
Q 032147 105 LIYCSRCLGT-GEYRYPMGFHFVKKSDSDS 133 (146)
Q Consensus 105 ~~~C~~C~G~-G~~~~~~~~~v~~~~~~~~ 133 (146)
...|+.|+-. -....+..+.+.+.++.++
T Consensus 37 ~y~C~~C~~~~~~~~~ry~l~~~i~D~tg~ 66 (146)
T PF08646_consen 37 SYRCEKCNKTVENPKYRYRLSLKISDGTGS 66 (146)
T ss_dssp EEEETTTTEEESS-EEEEEEEEEEEETTEE
T ss_pred EEECCCCCCcCCCeeEEEEEEEEEEeCCCe
Confidence 3467777644 1234445555555555543
No 157
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=22.56 E-value=39 Score=21.33 Aligned_cols=19 Identities=32% Similarity=0.926 Sum_probs=11.9
Q ss_pred ceeCCCCC-------CccEE--eCCCCC
Q 032147 94 PKWCKTCS-------GGGLI--YCSRCL 112 (146)
Q Consensus 94 ~~~C~~C~-------G~G~~--~C~~C~ 112 (146)
..+|..|+ |.|++ +|+.|+
T Consensus 4 tiRC~~CnKlLa~a~~~~yle~KCPrCK 31 (60)
T COG4416 4 TIRCAKCNKLLAEAEGQAYLEKKCPRCK 31 (60)
T ss_pred eeehHHHhHHHHhcccceeeeecCCccc
Confidence 34566664 45555 888886
No 158
>COG4643 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.43 E-value=42 Score=28.77 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=22.3
Q ss_pred EcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEEeCCCCC-CeeEEE
Q 032147 70 DCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLIYCSRCL-GTGEYR 118 (146)
Q Consensus 70 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~C~~C~-G~G~~~ 118 (146)
.|+.|.|+++....++ .|+|...|.-|. |.|.-.
T Consensus 34 ~cpvcg~k~RFr~dD~---------------kGrGtw~c~y~~~GDGl~l 68 (366)
T COG4643 34 PCPVCGGKDRFRFDDR---------------KGRGTWFCNYCGHGDGLPL 68 (366)
T ss_pred CCCccCCccccccCCc---------------cCCccEEEEeeccCCCccc
Confidence 6888888888765442 456666677675 666543
No 159
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=21.99 E-value=1.5e+02 Score=17.31 Aligned_cols=7 Identities=29% Similarity=0.928 Sum_probs=3.6
Q ss_pred EcCCCCC
Q 032147 70 DCYNCSG 76 (146)
Q Consensus 70 ~C~~C~G 76 (146)
.|..|+-
T Consensus 7 ~C~~Cg~ 13 (52)
T TIGR02605 7 RCTACGH 13 (52)
T ss_pred EeCCCCC
Confidence 4555553
No 160
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=21.88 E-value=66 Score=30.22 Aligned_cols=37 Identities=22% Similarity=0.547 Sum_probs=27.0
Q ss_pred eCCcccCccCcCc-------eeeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCc
Q 032147 54 KKPEPPCIVCHGT-------GRVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGG 103 (146)
Q Consensus 54 ~~~~~~C~~C~Gs-------G~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 103 (146)
.-....|++|... +...|..|+=... ....||.|++.
T Consensus 441 Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~-------------~p~~Cp~Cgs~ 484 (730)
T COG1198 441 CGYIAECPNCDSPLTLHKATGQLRCHYCGYQEP-------------IPQSCPECGSE 484 (730)
T ss_pred CCCcccCCCCCcceEEecCCCeeEeCCCCCCCC-------------CCCCCCCCCCC
Confidence 3457889999865 3388999984422 26789999998
No 161
>PRK11712 ribonuclease G; Provisional
Probab=21.65 E-value=55 Score=29.21 Aligned_cols=14 Identities=36% Similarity=0.703 Sum_probs=10.0
Q ss_pred cceeCCCCCCccEE
Q 032147 93 WPKWCKTCSGGGLI 106 (146)
Q Consensus 93 ~~~~C~~C~G~G~~ 106 (146)
...+||.|+|+|.+
T Consensus 401 l~~~Cp~C~G~G~v 414 (489)
T PRK11712 401 LCGECPTCHGRGTV 414 (489)
T ss_pred hcCCCCCCCCCCCc
Confidence 34677777777776
No 162
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=21.28 E-value=1.4e+02 Score=22.00 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=13.7
Q ss_pred eCCCCCCee-EEEeeEEEEEEeCCCCCC
Q 032147 107 YCSRCLGTG-EYRYPMGFHFVKKSDSDS 133 (146)
Q Consensus 107 ~C~~C~G~G-~~~~~~~~~v~~~~~~~~ 133 (146)
.|..|+..- ....+..+.+...++.++
T Consensus 53 ~C~~C~~~~~~~~~ry~l~~~i~D~Tg~ 80 (166)
T cd04476 53 RCEKCNKSVPNPEYRYILSLNVADHTGE 80 (166)
T ss_pred ECCCCCCcCCCccEEEEEEEEEEeCCCC
Confidence 566665443 233345555555555443
No 163
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.20 E-value=1.1e+02 Score=21.87 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=18.5
Q ss_pred eEeCeEEEEEeCCcccCccCcCce
Q 032147 44 TESNVRKLARKKPEPPCIVCHGTG 67 (146)
Q Consensus 44 ~~~G~~~~i~~~~~~~C~~C~GsG 67 (146)
.+.|....++..+...|..|..++
T Consensus 3 ~v~~~~~~V~~~r~saC~~C~~~~ 26 (135)
T PF04246_consen 3 AVEGGIAWVEVQRSSACGSCSASG 26 (135)
T ss_pred EEeCCEEEEEEccCCcCcccCCCC
Confidence 466677788888889999987554
No 164
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.03 E-value=79 Score=29.12 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=25.3
Q ss_pred eCCcccCccCcCce-------eeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCc
Q 032147 54 KKPEPPCIVCHGTG-------RVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGG 103 (146)
Q Consensus 54 ~~~~~~C~~C~GsG-------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 103 (146)
......|++|.+.= ...|+.|+-+-. ....||.|++.
T Consensus 387 Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~-------------~~~~Cp~Cg~~ 430 (679)
T PRK05580 387 CGWVAECPHCDASLTLHRFQRRLRCHHCGYQEP-------------IPKACPECGST 430 (679)
T ss_pred CcCccCCCCCCCceeEECCCCeEECCCCcCCCC-------------CCCCCCCCcCC
Confidence 44677899998752 267998873322 25679999876
Done!