Query 032147
Match_columns 146
No_of_seqs 177 out of 1382
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:31:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.8 4.4E-22 1.5E-26 139.5 1.4 91 26-126 3-102 (104)
2 1nlt_A Protein YDJ1, mitochond 99.8 1.4E-19 4.8E-24 144.2 6.6 97 25-128 12-119 (248)
3 1exk_A DNAJ protein; extended 99.6 8.7E-16 3E-20 101.9 3.3 69 47-119 1-78 (79)
4 2ctt_A DNAJ homolog subfamily 98.5 3.3E-08 1.1E-12 68.5 1.0 75 16-106 8-93 (104)
5 1exk_A DNAJ protein; extended 98.1 1.7E-06 5.7E-11 56.7 3.3 39 56-106 27-76 (79)
6 1nlt_A Protein YDJ1, mitochond 98.1 1.2E-06 4.1E-11 69.3 2.1 82 10-106 10-108 (248)
7 3lcz_A YCZA, inhibitor of trap 98.0 2.6E-06 8.7E-11 52.6 2.5 30 92-121 7-39 (53)
8 2bx9_A Anti-trap, AT, tryptoph 97.5 7.3E-05 2.5E-09 46.0 3.2 26 94-119 9-37 (53)
9 3lcz_A YCZA, inhibitor of trap 97.4 8.1E-05 2.8E-09 45.8 2.6 26 57-82 9-37 (53)
10 2bx9_A Anti-trap, AT, tryptoph 97.3 0.00012 4.1E-09 45.0 2.6 28 57-84 9-39 (53)
11 3pmq_A Decaheme cytochrome C M 97.1 1.7E-05 5.8E-10 70.7 -4.4 81 28-114 168-280 (669)
12 3agx_A DNAJ homolog subfamily 95.6 0.0056 1.9E-07 45.9 2.4 36 26-80 4-39 (181)
13 2q2g_A HSP40 protein, heat sho 91.9 0.12 4.2E-06 38.4 3.4 30 26-61 5-34 (180)
14 3nyb_B Protein AIR2; polya RNA 72.8 1.5 5E-05 28.8 1.5 51 56-110 4-64 (83)
15 3agx_A DNAJ homolog subfamily 72.7 3.1 0.0001 30.7 3.4 22 107-128 29-50 (181)
16 1c3g_A Heat shock protein 40; 72.5 0.73 2.5E-05 33.8 -0.1 26 26-57 2-27 (170)
17 3ga8_A HTH-type transcriptiona 56.1 13 0.00043 23.4 3.5 25 106-130 3-27 (78)
18 3lz8_A Putative chaperone DNAJ 50.1 3.7 0.00013 33.2 0.2 28 26-59 142-169 (329)
19 1pft_A TFIIB, PFTFIIBN; N-term 43.4 13 0.00046 21.2 1.9 8 104-111 23-30 (50)
20 2jrp_A Putative cytoplasmic pr 41.3 34 0.0012 22.2 3.9 9 107-115 53-61 (81)
21 1ltl_A DNA replication initiat 29.2 24 0.00083 27.4 1.9 57 69-132 135-191 (279)
22 2lli_A Protein AIR2; RNA surve 28.4 24 0.00081 23.9 1.5 15 95-109 65-81 (124)
23 2jne_A Hypothetical protein YF 27.8 66 0.0023 21.7 3.6 43 58-113 33-89 (101)
24 4bbr_M Transcription initiatio 27.1 8.9 0.0003 31.1 -1.0 18 104-124 41-58 (345)
25 2vf7_A UVRA2, excinuclease ABC 26.0 34 0.0012 31.1 2.5 14 70-83 640-653 (842)
26 2r6f_A Excinuclease ABC subuni 22.5 51 0.0017 30.6 2.9 14 70-83 755-768 (972)
27 2ygr_A Uvrabc system protein A 22.5 45 0.0015 31.0 2.6 12 107-118 302-313 (993)
28 2qkd_A Zinc finger protein ZPR 22.1 82 0.0028 26.2 3.9 37 69-106 13-53 (404)
29 3i38_A Putative chaperone DNAJ 21.7 22 0.00074 23.9 0.2 31 14-54 5-35 (109)
30 2qkd_A Zinc finger protein ZPR 20.0 78 0.0027 26.4 3.4 59 69-132 221-284 (404)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.4e-22 Score=139.51 Aligned_cols=91 Identities=24% Similarity=0.436 Sum_probs=83.2
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCC
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKT 99 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 99 (146)
+.+++|+|+|+| +|+|.+++|.+.+.+.|+.|+|+|+ .+|+.|+|+|++...+ |+|+++++|+.
T Consensus 3 ~~~~~l~vslee------~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~ 72 (104)
T 2ctt_A 3 SGSSGMELTFNQ------AAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRR 72 (104)
T ss_dssp CCCCCCCCCCSS------CCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSS
T ss_pred ceEEEEEEEHHH------HcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCc
Confidence 467889999999 9999999999999999999999995 7899999999987654 67888899999
Q ss_pred CCCccEE---eCCCCCCeeEEEeeEEEEEE
Q 032147 100 CSGGGLI---YCSRCLGTGEYRYPMGFHFV 126 (146)
Q Consensus 100 C~G~G~~---~C~~C~G~G~~~~~~~~~v~ 126 (146)
|+|+|++ +|+.|+|.|++++++.|+|+
T Consensus 73 C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~ 102 (104)
T 2ctt_A 73 CGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102 (104)
T ss_dssp SSSSSEECSSCCSSSSSCSEECCCCSSCCS
T ss_pred CCCcceECCCcCCCCCCeeEEEEEEEEEEE
Confidence 9999999 99999999999998888775
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.78 E-value=1.4e-19 Score=144.20 Aligned_cols=97 Identities=21% Similarity=0.301 Sum_probs=88.0
Q ss_pred ccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----eEcCCCCCccEEEEEeeeCCCCc-ccceeCC
Q 032147 25 KSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----VDCYNCSGKGRTNKTHLTMLPRG-EWPKWCK 98 (146)
Q Consensus 25 ~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~ 98 (146)
.|+.++|.|+|+| +|+|.++++.+.+...|+.|+|+|+ .+|+.|+|+|++...+++++ |+ +++++|+
T Consensus 12 ~d~~~~l~vslee------~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~ 84 (248)
T 1nlt_A 12 KDIKHEISASLEE------LYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECD 84 (248)
T ss_dssp CCEEEEEEECTTH------HHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCT
T ss_pred CCEEEEEEecHHH------hcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCC
Confidence 3567899999999 9999999999999999999999996 78999999999988887776 44 6789999
Q ss_pred CCCCccEE-----eCCCCCCeeEEEeeEEEEEEeC
Q 032147 99 TCSGGGLI-----YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 99 ~C~G~G~~-----~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
.|+|+|++ +|+.|+|.|++++.+.++|+..
T Consensus 85 ~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip 119 (248)
T 1nlt_A 85 VCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVE 119 (248)
T ss_dssp TCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEEC
T ss_pred CCCCcCEEeccCCCCcccCCCceEeeeEEEEEEEC
Confidence 99999976 8999999999999999999943
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.57 E-value=8.7e-16 Score=101.93 Aligned_cols=69 Identities=30% Similarity=0.636 Sum_probs=60.6
Q ss_pred CeEEEEEeCCcccCccCcCcee------eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE---eCCCCCCeeEE
Q 032147 47 NVRKLARKKPEPPCIVCHGTGR------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI---YCSRCLGTGEY 117 (146)
Q Consensus 47 G~~~~i~~~~~~~C~~C~GsG~------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~---~C~~C~G~G~~ 117 (146)
|.+++|.+.+...|+.|+|+|. .+|+.|+|+|.++..+ |+|+++.+|+.|+|+|++ +|+.|+|.|++
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~ 76 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV 76 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence 4456677889999999999996 6899999999987644 778888999999999999 99999999998
Q ss_pred Ee
Q 032147 118 RY 119 (146)
Q Consensus 118 ~~ 119 (146)
++
T Consensus 77 ~~ 78 (79)
T 1exk_A 77 ER 78 (79)
T ss_dssp EC
T ss_pred ee
Confidence 64
No 4
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=3.3e-08 Score=68.53 Aligned_cols=75 Identities=17% Similarity=0.384 Sum_probs=55.6
Q ss_pred eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee-----------eEcCCCCCccEEEEEe
Q 032147 16 VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTH 84 (146)
Q Consensus 16 ~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~ 84 (146)
...+|||++......|.+..... +....|.-.. .-.....|+.|+|+|. .+|+.|+|+|.++
T Consensus 8 l~vslee~~~G~~~~i~~~~~~~---C~~C~G~G~~-~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--- 80 (104)
T 2ctt_A 8 MELTFNQAAKGVNKEFTVNIMDT---CERCNGKGNE-PGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII--- 80 (104)
T ss_dssp CCCCCSSCCSSSCTTCCSSCCEE---CSSSSSSSSC-TTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC---
T ss_pred EEEEHHHHcCCCEEEEEeeeeeE---CCCCcCCccC-CCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC---
Confidence 34589999999888888877663 3333343211 0123578999999995 5899999999876
Q ss_pred eeCCCCcccceeCCCCCCccEE
Q 032147 85 LTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 85 ~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
..+|+.|+|.|++
T Consensus 81 ---------~~~C~~C~G~G~v 93 (104)
T 2ctt_A 81 ---------ISPCVVCRGAGQA 93 (104)
T ss_dssp ---------SSCCSSSSSCSEE
T ss_pred ---------CCcCCCCCCeeEE
Confidence 5789999999987
No 5
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.12 E-value=1.7e-06 Score=56.65 Aligned_cols=39 Identities=33% Similarity=0.893 Sum_probs=29.9
Q ss_pred CcccCccCcCcee-----------eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE
Q 032147 56 PEPPCIVCHGTGR-----------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 56 ~~~~C~~C~GsG~-----------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
....|+.|+|+|. .+|+.|+|+|.++ ..+|+.|+|.|++
T Consensus 27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~G~~ 76 (79)
T 1exk_A 27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI------------KDPCNKCHGHGRV 76 (79)
T ss_dssp CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC------------SSBCGGGTTSSEE
T ss_pred cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC------------CCcCCCCCCeEEE
Confidence 3467888888885 2788888888764 4678888888875
No 6
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.06 E-value=1.2e-06 Score=69.31 Aligned_cols=82 Identities=21% Similarity=0.371 Sum_probs=58.9
Q ss_pred CCCcee--eecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------------eEcC
Q 032147 10 ATPSTV--VRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------------VDCY 72 (146)
Q Consensus 10 ~~ps~~--~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------------~~C~ 72 (146)
.++... ...+|||++......++++-...+..| .-+|.+. .....|+.|+|+|. .+|+
T Consensus 10 ~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C-~G~G~~~----g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~ 84 (248)
T 1nlt_A 10 RGKDIKHEISASLEELYKGRTAKLALNKQILCKEC-EGRGGKK----GAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECD 84 (248)
T ss_dssp BCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTT-TTCSBST----TTCCCCTTSSSSSCEEEEEESSSEEEEEECSCT
T ss_pred CCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCC-cCccCCC----CCCccCCCCCCCcEEEEEEecCceEEEEEEcCC
Confidence 344443 445899999999999999877744333 1233322 12478999999984 4799
Q ss_pred CCCCccEEEEEeeeCCCCcccceeCCCCCCccEE
Q 032147 73 NCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI 106 (146)
Q Consensus 73 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 106 (146)
.|+|+|.++. ...+|+.|+|+|.+
T Consensus 85 ~C~G~G~~i~----------~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 85 VCHGTGDIID----------PKDRCKSCNGKKVE 108 (248)
T ss_dssp TCSSSSSCCC----------TTSBCSSSTTSCEE
T ss_pred CCCCcCEEec----------cCCCCcccCCCceE
Confidence 9999998752 26789999999986
No 7
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=98.01 E-value=2.6e-06 Score=52.60 Aligned_cols=30 Identities=30% Similarity=0.706 Sum_probs=25.9
Q ss_pred ccceeCCCCCCccEE---eCCCCCCeeEEEeeE
Q 032147 92 EWPKWCKTCSGGGLI---YCSRCLGTGEYRYPM 121 (146)
Q Consensus 92 ~~~~~C~~C~G~G~~---~C~~C~G~G~~~~~~ 121 (146)
+++++|+.|+|+|.+ +|+.|+|.|++++.+
T Consensus 7 q~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~~ 39 (53)
T 3lcz_A 7 DLETTCPNCNGSGREEPEPCPKCLGKGVILTAQ 39 (53)
T ss_dssp HHEEECTTTTTSCEETTEECTTTTTSSEEECHH
T ss_pred ceeccCcCCcccccCCCCcCCCCCCcEEEEEEe
Confidence 357899999999998 999999999987654
No 8
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.50 E-value=7.3e-05 Score=45.96 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=17.8
Q ss_pred ceeCCCCCCccEE---eCCCCCCeeEEEe
Q 032147 94 PKWCKTCSGGGLI---YCSRCLGTGEYRY 119 (146)
Q Consensus 94 ~~~C~~C~G~G~~---~C~~C~G~G~~~~ 119 (146)
+.+|+.|+|+|.+ +|+.|+|.|.+..
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEE
Confidence 4567777777766 7777777777654
No 9
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.41 E-value=8.1e-05 Score=45.76 Aligned_cols=26 Identities=42% Similarity=0.890 Sum_probs=17.5
Q ss_pred cccCccCcCcee---eEcCCCCCccEEEE
Q 032147 57 EPPCIVCHGTGR---VDCYNCSGKGRTNK 82 (146)
Q Consensus 57 ~~~C~~C~GsG~---~~C~~C~G~G~~~~ 82 (146)
...|+.|+|+|. .+|+.|+|+|.+..
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 346777777776 66777777776653
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.32 E-value=0.00012 Score=44.98 Aligned_cols=28 Identities=36% Similarity=0.733 Sum_probs=19.3
Q ss_pred cccCccCcCcee---eEcCCCCCccEEEEEe
Q 032147 57 EPPCIVCHGTGR---VDCYNCSGKGRTNKTH 84 (146)
Q Consensus 57 ~~~C~~C~GsG~---~~C~~C~G~G~~~~~~ 84 (146)
...|+.|+|+|. .+|+.|+|+|.+...+
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~~q 39 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILTAQ 39 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEECHH
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEEEe
Confidence 346777777776 6777777777776543
No 11
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.07 E-value=1.7e-05 Score=70.73 Aligned_cols=81 Identities=15% Similarity=0.304 Sum_probs=60.3
Q ss_pred eeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCcee---------eEcCCCCCccEEEEE--------eeeCCCC
Q 032147 28 GVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGR---------VDCYNCSGKGRTNKT--------HLTMLPR 90 (146)
Q Consensus 28 ~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~---------~~C~~C~G~G~~~~~--------~~~~~g~ 90 (146)
.+.+.|+|+| ++.|.++++++.+...|..|+|+|+ .+|+.|+|+...... .....|.
T Consensus 168 ~~~l~i~fee------A~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~ 241 (669)
T 3pmq_A 168 ITNQHYDWQS------SGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTG 241 (669)
T ss_dssp SCCCEEEEEC------SSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSS
T ss_pred eEEEEEEhHH------hhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccC
Confidence 4778999999 8999999999999999999999984 689999999421110 0111233
Q ss_pred c-ccceeCCCCCCccE----------E----eCCCCCCe
Q 032147 91 G-EWPKWCKTCSGGGL----------I----YCSRCLGT 114 (146)
Q Consensus 91 ~-~~~~~C~~C~G~G~----------~----~C~~C~G~ 114 (146)
| +....|..|+..+. . .|..|+..
T Consensus 242 fP~~~~~C~~CH~~~~~la~~~~w~~~ps~~aC~sCH~~ 280 (669)
T 3pmq_A 242 FPQSISNCQTCHADNPDLADRQNWYRVPTMEACGACHTQ 280 (669)
T ss_dssp CSSCTTCCTTTSCCCTTCCSCSCTTTCCCHHHHHHHCCS
T ss_pred CCCccCcchhhcCCccccccccccccCCchhhhhhccCC
Confidence 3 45678999998875 1 68888753
No 12
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=95.58 E-value=0.0056 Score=45.90 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=27.0
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCccCcCceeeEcCCCCCccEE
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCIVCHGTGRVDCYNCSGKGRT 80 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~~C~GsG~~~C~~C~G~G~~ 80 (146)
++.+.|.|||+| +|+|+++.+.+. ..|+.|+|+|.+
T Consensus 4 d~~~~l~islee------~~~G~~k~i~i~-------------~~c~~c~G~g~~ 39 (181)
T 3agx_A 4 PVTHDLRVSLEE------IYSGCTKKMKIS-------------HKRLNPDGKSIR 39 (181)
T ss_dssp --CEEEEECHHH------HHHCEEEEEEEE-------------EEEECTTSSCEE
T ss_pred CEEEEEEEEHHH------hcCCcEEEEEEe-------------cccCCCCCceEE
Confidence 567899999999 999999999765 345666666653
No 13
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=91.88 E-value=0.12 Score=38.36 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=27.1
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCcccCc
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPPCI 61 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~C~ 61 (146)
++.+.|.|||+| +|+|+++.+++.+...|.
T Consensus 5 d~~~~l~islee------~~~G~~k~i~~~~~~~c~ 34 (180)
T 2q2g_A 5 SHEVPLLVTLEE------LYLGKRKKIKVTRKRFIE 34 (180)
T ss_dssp EEEEEEEECHHH------HHHCEEEEEEEEEEEEET
T ss_pred CEEEEEEeeHHH------hcCCcEEEEEEeEEEecC
Confidence 567899999999 999999999999888885
No 14
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=72.82 E-value=1.5 Score=28.76 Aligned_cols=51 Identities=18% Similarity=0.434 Sum_probs=28.9
Q ss_pred CcccCccCcCcee--------eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE--eCCC
Q 032147 56 PEPPCIVCHGTGR--------VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI--YCSR 110 (146)
Q Consensus 56 ~~~~C~~C~GsG~--------~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~--~C~~ 110 (146)
+.+.|..|...|. ..|..|...|.+...-... .....|..|...|.+ .|+.
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p----~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLP----FHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-----------------CCCBCSSSSCBSSCGGGCSS
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccCC----CCCCeecccCCCCcCcccCCc
Confidence 3577999998885 3577788887654321110 135789999999999 8875
No 15
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=72.68 E-value=3.1 Score=30.69 Aligned_cols=22 Identities=9% Similarity=-0.259 Sum_probs=18.7
Q ss_pred eCCCCCCeeEEEeeEEEEEEeC
Q 032147 107 YCSRCLGTGEYRYPMGFHFVKK 128 (146)
Q Consensus 107 ~C~~C~G~G~~~~~~~~~v~~~ 128 (146)
+|+.|+|.|++++.+.++|+..
T Consensus 29 ~c~~c~G~g~~~~~~~l~V~Ip 50 (181)
T 3agx_A 29 KRLNPDGKSIRNEDKILTIEVK 50 (181)
T ss_dssp EEECTTSSCEEEEEEEEEEEEC
T ss_pred ccCCCCCceEEEEeEEEEEEEC
Confidence 6888999999999999999843
No 16
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=72.47 E-value=0.73 Score=33.77 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.9
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCc
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPE 57 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~ 57 (146)
|+.+.|.|||+| +|+|+++.+++.+.
T Consensus 2 d~~~~l~islee------~~~G~~k~i~~~~~ 27 (170)
T 1c3g_A 2 TVQVNLPVSLED------LFVGKKKSFKIGRK 27 (170)
T ss_dssp EEEEEEEECHHH------HHHTCEEEEEEEEE
T ss_pred CEEEEEEeEHHH------hhCCcEEEEEEEEe
Confidence 467899999999 99999999998765
No 17
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=56.13 E-value=13 Score=23.41 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=16.6
Q ss_pred EeCCCCCCeeEEEeeEEEEEEeCCC
Q 032147 106 IYCSRCLGTGEYRYPMGFHFVKKSD 130 (146)
Q Consensus 106 ~~C~~C~G~G~~~~~~~~~v~~~~~ 130 (146)
..|+.|.+...+.....+++.+++.
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~ 27 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGR 27 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTE
T ss_pred eECCCCCCCeeEeEEEEEEEEECCE
Confidence 3678886655777777777766543
No 18
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=50.12 E-value=3.7 Score=33.22 Aligned_cols=28 Identities=4% Similarity=-0.033 Sum_probs=24.0
Q ss_pred cceeeEEEeeecCcceeeeEeCeEEEEEeCCccc
Q 032147 26 SNGVPLSLSFKKPSWVVRTESNVRKLARKKPEPP 59 (146)
Q Consensus 26 ~~~~~l~isl~ep~~~~~~~~G~~~~i~~~~~~~ 59 (146)
++.+.|.|+|+| +|+|.++.+.+.+.+.
T Consensus 142 Dl~~~l~vslee------a~~G~~k~i~i~~~v~ 169 (329)
T 3lz8_A 142 DLEIEVAVFLEE------TLAEQTRTISYNLPVY 169 (329)
T ss_dssp CEEEEECCCTTG------GGSCEEEEEEEEEEEC
T ss_pred CEEEEEecchhh------hhhccceEEEEEEEee
Confidence 567889999999 9999999999887653
No 19
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=43.37 E-value=13 Score=21.22 Aligned_cols=8 Identities=50% Similarity=1.393 Sum_probs=4.2
Q ss_pred cEEeCCCC
Q 032147 104 GLIYCSRC 111 (146)
Q Consensus 104 G~~~C~~C 111 (146)
|.+.|..|
T Consensus 23 gelvC~~C 30 (50)
T 1pft_A 23 GEIVCAKC 30 (50)
T ss_dssp TEEEESSS
T ss_pred CeEECccc
Confidence 33456655
No 20
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=41.33 E-value=34 Score=22.17 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=6.4
Q ss_pred eCCCCCCee
Q 032147 107 YCSRCLGTG 115 (146)
Q Consensus 107 ~C~~C~G~G 115 (146)
.|..|++--
T Consensus 53 FC~~C~~Li 61 (81)
T 2jrp_A 53 FCQNGHGLI 61 (81)
T ss_dssp CCTTTTCCC
T ss_pred eeccCCCEe
Confidence 788887643
No 21
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=29.22 E-value=24 Score=27.38 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=27.7
Q ss_pred eEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEEeCCCCCCeeEEEeeEEEEEEeCCCCC
Q 032147 69 VDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLIYCSRCLGTGEYRYPMGFHFVKKSDSD 132 (146)
Q Consensus 69 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~v~~~~~~~ 132 (146)
..|..|+-...+. . . .+.+.....|+.|.++|...=. +.-.-....++.|-..+.+.
T Consensus 135 f~C~~C~~~~~v~--~-~-~~~~~~P~~Cp~C~~~~f~l~~---~~s~f~D~Q~ikiQE~pe~v 191 (279)
T 1ltl_A 135 FECRGCMRHHAVT--Q-S-TNMITEPSLCSECGGRSFRLLQ---DESEFLDTQTLKLQEPLENL 191 (279)
T ss_dssp EEETTTCCEEEEE--C-S-SSSCCCCSCCTTTCCCCEEECG---GGCEEEEEEEEEEECCSTTC
T ss_pred EEcCCCCCEEEEE--e-c-CCcccCCCcCCCCCCCCcEEec---cccEEEeeEEEEEecCcccC
Confidence 5677776443222 1 1 2334455678888887733110 11123445555555544433
No 22
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=28.41 E-value=24 Score=23.93 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=8.9
Q ss_pred eeCCCCCCccEE--eCC
Q 032147 95 KWCKTCSGGGLI--YCS 109 (146)
Q Consensus 95 ~~C~~C~G~G~~--~C~ 109 (146)
..|..|...|.+ .|+
T Consensus 65 ~~C~~Cg~~GH~~~~Cp 81 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCP 81 (124)
T ss_dssp CSSSSSCSSCCCTTTCC
T ss_pred ccCCCCCcCCcchhhCC
Confidence 456666666665 455
No 23
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.80 E-value=66 Score=21.69 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=28.6
Q ss_pred ccCccCcCce-----eeEcCCCCCccEEEEEeeeCCCCcccceeCCCCCCccEE---------eCCCCCC
Q 032147 58 PPCIVCHGTG-----RVDCYNCSGKGRTNKTHLTMLPRGEWPKWCKTCSGGGLI---------YCSRCLG 113 (146)
Q Consensus 58 ~~C~~C~GsG-----~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~---------~C~~C~G 113 (146)
..|+.|+-.= ...|..|+.. |...-.||.|+-.=.+ .|..|+|
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~-------------f~~~a~CPdC~q~LevLkACGAvdYFC~~chg 89 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF-------------IEMKALCPDCHQPLQVLKACGAVDYFCQHGHG 89 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE-------------EEEEEECTTTCSBCEEEEETTEEEEEETTTTE
T ss_pred ccCccCCCcceecCCEEECccccch-------------hhccccCcchhhHHHHHHHhcCcchhhccCCc
Confidence 7888887542 2458888862 2235678988877443 7787765
No 24
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=27.12 E-value=8.9 Score=31.07 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=11.3
Q ss_pred cEEeCCCCCCeeEEEeeEEEE
Q 032147 104 GLIYCSRCLGTGEYRYPMGFH 124 (146)
Q Consensus 104 G~~~C~~C~G~G~~~~~~~~~ 124 (146)
|...|..| |.|.+...++
T Consensus 41 G~~vC~~C---GlVl~e~~iD 58 (345)
T 4bbr_M 41 GDVVCALC---GLVLSDKLVD 58 (345)
T ss_dssp TEEEETTT---CBEEESCCBC
T ss_pred CcEEeCCC---CCCccCcccc
Confidence 55578888 5666555554
No 25
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=25.99 E-value=34 Score=31.12 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=9.5
Q ss_pred EcCCCCCccEEEEE
Q 032147 70 DCYNCSGKGRTNKT 83 (146)
Q Consensus 70 ~C~~C~G~G~~~~~ 83 (146)
.|+.|.|.|.+...
T Consensus 640 ~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 640 RCEHCQGEGWVMVE 653 (842)
T ss_dssp BCTTTTTCSEEEET
T ss_pred ccccccCCCccchh
Confidence 37777777777543
No 26
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=22.52 E-value=51 Score=30.62 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=9.6
Q ss_pred EcCCCCCccEEEEE
Q 032147 70 DCYNCSGKGRTNKT 83 (146)
Q Consensus 70 ~C~~C~G~G~~~~~ 83 (146)
.|+.|.|.|.+...
T Consensus 755 rC~~C~g~G~i~~e 768 (972)
T 2r6f_A 755 RCEACHGDGIIKIE 768 (972)
T ss_dssp BCTTTTTCSEEEEC
T ss_pred cccccccccceeee
Confidence 47777777777654
No 27
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=22.45 E-value=45 Score=31.03 Aligned_cols=12 Identities=33% Similarity=0.803 Sum_probs=9.1
Q ss_pred eCCCCCCeeEEE
Q 032147 107 YCSRCLGTGEYR 118 (146)
Q Consensus 107 ~C~~C~G~G~~~ 118 (146)
.|+.|+|-|.+.
T Consensus 302 aCp~C~G~G~~~ 313 (993)
T 2ygr_A 302 ACPDCSGLGIRK 313 (993)
T ss_dssp BCTTTTTSCEEE
T ss_pred CCCCCcCcccee
Confidence 688888888765
No 28
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=22.15 E-value=82 Score=26.23 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=24.0
Q ss_pred eEcCCCCCccEEEEEeeeCCCCc----ccceeCCCCCCccEE
Q 032147 69 VDCYNCSGKGRTNKTHLTMLPRG----EWPKWCKTCSGGGLI 106 (146)
Q Consensus 69 ~~C~~C~G~G~~~~~~~~~~g~~----~~~~~C~~C~G~G~~ 106 (146)
..|+.|+..|......-..| +| .+...|+.|+=+-..
T Consensus 13 s~Cp~C~~~g~t~~~~~~IP-~F~eVii~Sf~C~~CGyrn~e 53 (404)
T 2qkd_A 13 SLCMNCYRNGTTRLLLTKIP-FFREIIVSSFSCEHCGWNNTE 53 (404)
T ss_dssp EECTTTSSEEEEEEEEEEET-TTEEEEEEEEECTTTCCEEEE
T ss_pred ccCCCCCCCceEEEEEEcCC-CCceEEEEEEECCCCCCchhe
Confidence 77999998887554422222 33 367889888876544
No 29
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=21.74 E-value=22 Score=23.89 Aligned_cols=31 Identities=6% Similarity=-0.063 Sum_probs=22.2
Q ss_pred eeeecchhhhcccceeeEEEeeecCcceeeeEeCeEEEEEe
Q 032147 14 TVVRNRIEDESKSNGVPLSLSFKKPSWVVRTESNVRKLARK 54 (146)
Q Consensus 14 ~~~~~~~ed~~~~~~~~l~isl~ep~~~~~~~~G~~~~i~~ 54 (146)
..+++...| +.+.+.|+|.| ++.|.+..+..
T Consensus 5 ~~F~R~G~D----L~~~~~Isl~e------Al~G~~i~v~t 35 (109)
T 3i38_A 5 PLFDIVGHN----LEIVLPLAPWE------AALGAKVTVPT 35 (109)
T ss_dssp CCCEEETTE----EEEEEEECHHH------HHHCEEEEECC
T ss_pred CCeEEECCE----EEEEEEcCHHH------HhCCCEEEEEc
Confidence 345555544 56889999999 88898877643
No 30
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=20.02 E-value=78 Score=26.36 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=31.9
Q ss_pred eEcCCCCCccEEEEEeeeCCCCc----ccceeCCCCCCccEE-eCCCCCCeeEEEeeEEEEEEeCCCCC
Q 032147 69 VDCYNCSGKGRTNKTHLTMLPRG----EWPKWCKTCSGGGLI-YCSRCLGTGEYRYPMGFHFVKKSDSD 132 (146)
Q Consensus 69 ~~C~~C~G~G~~~~~~~~~~g~~----~~~~~C~~C~G~G~~-~C~~C~G~G~~~~~~~~~v~~~~~~~ 132 (146)
..|+.|+..|......-.. ++| .+...|+.|+=+-.. +- |......-+.+++++.+-+|
T Consensus 221 s~Cp~C~~~~~t~~~~~~I-P~F~eViims~~C~~CGyr~neVk~----~g~i~~~G~ritL~V~~~~D 284 (404)
T 2qkd_A 221 TNCPECNAPAQTNMKLVQI-PHFKEVIIMATNCENCGHRTNEVKS----GGAVEPLGTRITLHITDPSD 284 (404)
T ss_dssp ECCTTTCCTTCEEEEEECC-TTSCCEEEEEEECSSSCCEEEEEEE----CSSSCCCEEEEEEEECSGGG
T ss_pred ccCccCCCccEEEEEEEeC-CCCCcEEEEEEECCCCCCcccceee----ccccCCCcEEEEEEECChHH
Confidence 5688888888765432222 223 367888888766543 21 12222233555666555444
Done!