BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032148
         (146 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q68RJ7|ACH92_ONCMY Neuronal acetylcholine receptor subunit alpha-9-II OS=Oncorhynchus
           mykiss PE=2 SV=1
          Length = 550

 Score = 31.2 bits (69), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 21  PQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCKLDK 72
           PQR  K   + +  ++ KN  S+S   GF   +  PL  C +    CC  D+
Sbjct: 411 PQRHPKPRHQHHITRDEKNHLSSSKYEGFESNRNLPLGDCCKEAPPCCPEDE 462


>sp|A7ZAI1|IOLA_BACA2 Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus
           amyloliquefaciens (strain FZB42) GN=iolA PE=3 SV=1
          Length = 487

 Score = 30.0 bits (66), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 13  VVLAAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKME 55
           ++   QQ  Q+  ++L +  T +N KN+T     VG GIE +E
Sbjct: 71  ILFNYQQLLQQNKEELARLITLENGKNTTEALGEVGRGIENVE 113


>sp|Q9ZMG1|Y274_HELPJ Uncharacterized protein jhp_0259 OS=Helicobacter pylori (strain
           J99) GN=jhp_0259 PE=4 SV=1
          Length = 132

 Score = 28.9 bits (63), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 21/86 (24%)

Query: 62  QGCGA-CCKLDKGPDFATPEEIFDDPSDVEL--------------YR-SLIGPDG----- 100
           +GCGA CC  + G  F T +E+    + ++L              Y+ SL+  D      
Sbjct: 14  EGCGAKCCVGESGYIFVTIQEMQQISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKDLGL 73

Query: 101 WCINYEKSTRKCSIYPERPYFCRVEP 126
            C+  +  T+KC IY  RP  C+  P
Sbjct: 74  ACVFLDLETKKCQIYSARPKQCQTFP 99


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,610,457
Number of Sequences: 539616
Number of extensions: 2390224
Number of successful extensions: 5716
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5710
Number of HSP's gapped (non-prelim): 8
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)