Query 032148
Match_columns 146
No_of_seqs 142 out of 1086
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 10:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03692 CxxCxxCC: Putative zi 99.6 1.7E-16 3.7E-21 109.0 4.0 67 59-128 1-72 (85)
2 COG0727 Predicted Fe-S-cluster 99.4 1.9E-14 4.2E-19 106.7 0.4 79 53-134 6-96 (132)
3 PRK05170 hypothetical protein; 97.3 5.6E-05 1.2E-09 58.8 0.3 46 59-120 23-68 (147)
4 COG2983 Uncharacterized conser 94.3 0.013 2.9E-07 45.7 0.2 20 101-120 54-73 (153)
5 PF11307 DUF3109: Protein of u 93.0 0.04 8.6E-07 44.4 0.8 78 54-131 14-131 (183)
6 COG1143 NuoI Formate hydrogenl 29.2 46 0.001 26.4 2.3 36 32-69 30-65 (172)
7 PF12797 Fer4_2: 4Fe-4S bindin 27.7 22 0.00047 19.3 0.2 9 58-67 8-16 (22)
8 PF12837 Fer4_6: 4Fe-4S bindin 20.7 37 0.0008 18.3 0.2 9 58-67 7-15 (24)
9 PRK08222 hydrogenase 4 subunit 19.0 76 0.0016 24.9 1.7 35 31-68 13-47 (181)
10 PF06446 Hepcidin: Hepcidin; 18.8 21 0.00045 23.6 -1.3 7 63-69 50-56 (57)
No 1
>PF03692 CxxCxxCC: Putative zinc- or iron-chelating domain; InterPro: IPR005358 This family of proteins contain 8 conserved cysteines that may form a zinc binding site. The function of these proteins is unknown.
Probab=99.63 E-value=1.7e-16 Score=108.95 Aligned_cols=67 Identities=34% Similarity=0.640 Sum_probs=51.3
Q ss_pred cchhhhhHhcCCCCCCCcCCHHHhhhChHHHHH-----hhhhcCCCCccccccCCCCCCcccCCCCcccccchhh
Q 032148 59 RCVQGCGACCKLDKGPDFATPEEIFDDPSDVEL-----YRSLIGPDGWCINYEKSTRKCSIYPERPYFCRVEPAV 128 (146)
Q Consensus 59 ~C~~gCG~CC~~~~~~v~lt~~Ei~~i~~~l~~-----y~~l~~~dg~CpFLd~~~~~CsIYe~RP~~CR~yPf~ 128 (146)
.|. +||.||+.. .+.++..|+.++...... .......+++|+||++++++|+||++||++||.||+.
T Consensus 1 ~C~-~Cg~CC~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~C~fL~~~~~~C~Iy~~RP~~CR~~p~~ 72 (85)
T PF03692_consen 1 KCR-QCGACCRGY--RVPLTPEEIERIAEHLGIEEEFFLERYAREDGPCPFLDEDNGRCSIYEVRPLICRTYPFW 72 (85)
T ss_pred Ccc-cHhHHHcCC--CcCCCHHHHHHHHHHhcCchhhhHHHhhccCCCCcCcCCCCCccCCcCccCHhHeeCccc
Confidence 484 799999943 367899999877654331 1112237889999997667999999999999999987
No 2
>COG0727 Predicted Fe-S-cluster oxidoreductase [General function prediction only]
Probab=99.43 E-value=1.9e-14 Score=106.70 Aligned_cols=79 Identities=27% Similarity=0.436 Sum_probs=52.0
Q ss_pred cCCCCCcchhhhhHhcCCCCCCCcCCHHHhhhCh--------HHHHHhh----hhcCCCCccccccCCCCCCcccCCCCc
Q 032148 53 KMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDP--------SDVELYR----SLIGPDGWCINYEKSTRKCSIYPERPY 120 (146)
Q Consensus 53 ~~~~~f~C~~gCG~CC~~~~~~v~lt~~Ei~~i~--------~~l~~y~----~l~~~dg~CpFLd~~~~~CsIYe~RP~ 120 (146)
.+...+.| .+||+||......+ ...++.++. ..+..+. .....+++|+||+.+++.|+||++||.
T Consensus 6 ~~~~~~~c-~~Cg~cC~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~fl~~~~~~C~Iy~~RP~ 82 (132)
T COG0727 6 FKFIFFCC-EGCGACCCAIEVSL--PEPGFDRGELKGYPADTEALPKYLRCKLLDVDINGRCVFLDGETKLCRIYEIRPL 82 (132)
T ss_pred hhhhhhhH-HHhhHHhcCCCCCc--chhhhhHHHhcCCCccceeecccceeeeecccCCCCCEEecCCCCceeecCcCch
Confidence 44566789 69999999765432 333332221 0011121 222445699999987778999999999
Q ss_pred ccccchhhhHHhhC
Q 032148 121 FCRVEPAVFLSLYG 134 (146)
Q Consensus 121 ~CR~yPf~~~~~~g 134 (146)
+||+|||++....+
T Consensus 83 ~Cr~~P~~~~~~~~ 96 (132)
T COG0727 83 ACRTFPFVEERGTG 96 (132)
T ss_pred hheecceEEeccce
Confidence 99999997766544
No 3
>PRK05170 hypothetical protein; Provisional
Probab=97.33 E-value=5.6e-05 Score=58.84 Aligned_cols=46 Identities=28% Similarity=0.540 Sum_probs=32.4
Q ss_pred cchhhhhHhcCCCCCCCcCCHHHhhhChHHHHHhhhhcCCCCccccccCCCCCCcccCCCCc
Q 032148 59 RCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRKCSIYPERPY 120 (146)
Q Consensus 59 ~C~~gCG~CC~~~~~~v~lt~~Ei~~i~~~l~~y~~l~~~dg~CpFLd~~~~~CsIYe~RP~ 120 (146)
.| .|||.||-+.- ..+|- ..+.-.+..|.+||.++.+|++|+.|=.
T Consensus 23 LC-DgCG~CCl~Kl-----eDedt----------gei~~T~vaC~lLD~~T~~C~~Y~~R~~ 68 (147)
T PRK05170 23 LC-DGCGKCCLHKL-----EDEDT----------GEIYYTNVACRLLDIKTCQCSDYENRFE 68 (147)
T ss_pred Hh-hhhhHHhceee-----eccCC----------CcEEEcceecccccCCCCCCCChhhhcc
Confidence 49 69999998531 22221 1122356789999988999999999954
No 4
>COG2983 Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=0.013 Score=45.72 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.6
Q ss_pred ccccccCCCCCCcccCCCCc
Q 032148 101 WCINYEKSTRKCSIYPERPY 120 (146)
Q Consensus 101 ~CpFLd~~~~~CsIYe~RP~ 120 (146)
.|..||.++.+|+.|+.|=.
T Consensus 54 aC~lLd~etcrC~~Y~~Rf~ 73 (153)
T COG2983 54 ACELLDPETCRCKDYENRFK 73 (153)
T ss_pred eeeecCccccccccHHhhhc
Confidence 59999999999999998843
No 5
>PF11307 DUF3109: Protein of unknown function (DUF3109); InterPro: IPR021458 This bacterial family of proteins has no known function.
Probab=92.97 E-value=0.04 Score=44.44 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=47.7
Q ss_pred CCCCCcc-hhhh-hHhcCCCCCCCcCCHHHhhhChHHHH---Hhhh-------------hcC----------CCCccccc
Q 032148 54 MEPLWRC-VQGC-GACCKLDKGPDFATPEEIFDDPSDVE---LYRS-------------LIG----------PDGWCINY 105 (146)
Q Consensus 54 ~~~~f~C-~~gC-G~CC~~~~~~v~lt~~Ei~~i~~~l~---~y~~-------------l~~----------~dg~CpFL 105 (146)
....|.| ...| |.||-.-..--+|+.+|+..+.+.+. .|++ ..+ .++.|+|.
T Consensus 14 ~~~~F~CdL~~CkG~CCvEGd~GAPl~~~E~~~le~~~~~v~~~L~~~~~~~I~~qG~~~~d~~Gd~~T~~v~g~eCvf~ 93 (183)
T PF11307_consen 14 LEEKFVCDLSACKGACCVEGDAGAPLEEEEIAILEEIYPKVKPYLSPEGIAAIERQGVAYEDEDGDLVTPIVNGKECVFT 93 (183)
T ss_pred HhhcccCchhcCCCCCccCCCcCCCCCHHHHHHHHHHhHHHhhhcCHHHHHHHHHcCceEEecCCCEEeeeEcCCeeEEE
Confidence 3466777 2368 99998544345678888865543222 2210 001 23479998
Q ss_pred cC-CC--CCCcccC---------CCCcccccchhhhHH
Q 032148 106 EK-ST--RKCSIYP---------ERPYFCRVEPAVFLS 131 (146)
Q Consensus 106 d~-~~--~~CsIYe---------~RP~~CR~yPf~~~~ 131 (146)
.- ++ ..|.|-. .+|..|++||-...+
T Consensus 94 ~~~e~G~~~CaiE~Ay~~G~~~~~KPISChLYPIRv~~ 131 (183)
T PF11307_consen 94 CYDENGICLCAIEKAYREGKIDFKKPISCHLYPIRVKK 131 (183)
T ss_pred EEccCCEEEEHHHHHHHcCCCCCCCCceEeecceEEEe
Confidence 53 33 3687765 799999999954443
No 6
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=29.23 E-value=46 Score=26.39 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=25.9
Q ss_pred CcccCCCCCCccccccccccccCCCCCcchhhhhHhcC
Q 032148 32 NTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACCK 69 (146)
Q Consensus 32 ~~~~~~~~~~~~~~~~gf~~~~~~~~f~C~~gCG~CC~ 69 (146)
...++=|.-.++.+ -+|.+........|. +|+.|=.
T Consensus 30 ~vT~~YP~e~~~~~-~rfRG~~~l~~~~CI-gC~lCa~ 65 (172)
T COG1143 30 PVTIEYPEEKIPLS-PRFRGRHVLDRDKCI-GCGLCAN 65 (172)
T ss_pred CchhhCccccCCCC-CCccceeeccccCCc-chhHHHh
Confidence 34444466665555 789888888888897 9998843
No 7
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=27.72 E-value=22 Score=19.31 Aligned_cols=9 Identities=78% Similarity=1.981 Sum_probs=6.9
Q ss_pred CcchhhhhHh
Q 032148 58 WRCVQGCGAC 67 (146)
Q Consensus 58 f~C~~gCG~C 67 (146)
-.|. ||++|
T Consensus 8 ~rCi-GC~~C 16 (22)
T PF12797_consen 8 ERCI-GCGAC 16 (22)
T ss_pred cccc-CchhH
Confidence 4685 89888
No 8
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=20.70 E-value=37 Score=18.34 Aligned_cols=9 Identities=56% Similarity=1.774 Sum_probs=6.7
Q ss_pred CcchhhhhHh
Q 032148 58 WRCVQGCGAC 67 (146)
Q Consensus 58 f~C~~gCG~C 67 (146)
-.|. +||.|
T Consensus 7 ~~C~-~Cg~C 15 (24)
T PF12837_consen 7 DKCI-GCGDC 15 (24)
T ss_pred hhCc-ChhHH
Confidence 3684 89888
No 9
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=19.00 E-value=76 Score=24.90 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCcccCCCCCCccccccccccccCCCCCcchhhhhHhc
Q 032148 31 PNTKQNNKNSTSTSSSVGFGIEKMEPLWRCVQGCGACC 68 (146)
Q Consensus 31 ~~~~~~~~~~~~~~~~~gf~~~~~~~~f~C~~gCG~CC 68 (146)
+.|..| |+.. ....-||.+......-.|. +||.|=
T Consensus 13 ~~T~~y-P~~~-~~~p~~~rG~~~~d~~~Ci-~Cg~Cv 47 (181)
T PRK08222 13 TATVKY-PFAP-LEVSPGFRGKPDLMPSQCI-ACGACT 47 (181)
T ss_pred CccccC-CCcc-cCCCCCccCceEeChhhCc-chhHHH
Confidence 455555 5544 5567788777666667885 898863
No 10
>PF06446 Hepcidin: Hepcidin; InterPro: IPR010500 Hepcidin is a antibacterial and anti-fungal protein expressed in the liver and is also a signalling molecule in iron metabolism. The hepcidin protein is cysteine-rich and forms a distorted beta-sheet with an unusual disulphide bond found at the turn of the hairpin [].; GO: 0006879 cellular iron ion homeostasis, 0005576 extracellular region; PDB: 1M4E_A 2KEF_A 1M4F_A 3H0T_C 1S6W_A.
Probab=18.84 E-value=21 Score=23.59 Aligned_cols=7 Identities=71% Similarity=2.399 Sum_probs=3.2
Q ss_pred hhhHhcC
Q 032148 63 GCGACCK 69 (146)
Q Consensus 63 gCG~CC~ 69 (146)
+||.||+
T Consensus 50 gCG~CC~ 56 (57)
T PF06446_consen 50 GCGVCCR 56 (57)
T ss_dssp SEEEEE-
T ss_pred CCCcccC
Confidence 4555554
Done!