Query 032148
Match_columns 146
No_of_seqs 142 out of 1086
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mhs_C SAGA-associated factor 27.3 29 0.00098 24.5 1.8 49 16-65 28-77 (99)
2 1g1p_A Conotoxin EVIA; three d 14.8 62 0.0021 18.1 1.0 14 47-60 7-20 (33)
3 2hm3_A Nematocyst outer WALL a 14.2 43 0.0015 18.5 0.3 9 59-67 7-16 (31)
4 1s6w_A Hepcidin; two strand an 10.6 42 0.0014 18.2 -0.5 9 63-71 14-22 (26)
5 1m4f_A Hepcidin; strand-loop-s 10.0 44 0.0015 18.1 -0.6 8 63-70 18-25 (26)
6 2lg4_A Aurelin; antimicrobial 10.9 82 0.0028 18.7 0.0 12 56-67 29-40 (40)
7 1iqz_A Ferredoxin; iron-sulfer 7.2 90 0.0031 19.2 -0.1 12 57-69 8-19 (81)
8 1dax_A Ferredoxin I; electron 6.9 97 0.0033 17.9 -0.1 10 58-68 9-18 (64)
9 1sj1_A Ferredoxin; thermostabi 6.4 1E+02 0.0036 17.6 -0.1 10 58-68 9-18 (66)
10 2hgo_A CASSIICOLIN; toxin, dis 5.8 79 0.0027 17.0 -0.8 16 48-64 12-27 (27)
No 1
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=27.26 E-value=29 Score=24.51 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=31.8
Q ss_pred hhhccchhhhhhcCCCCcccCCCCCCccccccccccc-cCCCCCcchhhhh
Q 032148 16 AAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIE-KMEPLWRCVQGCG 65 (146)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~-~~~~~f~C~~gCG 65 (146)
.++.+-+.++-..+.|+.|.|.-...+..+..|-... .....|.|+ .||
T Consensus 28 v~~e~~~~k~l~~r~p~~k~y~~~~~~~lDIfG~~~~~~~s~~~~C~-nC~ 77 (99)
T 3mhs_C 28 VARETTQQQLLKTRYPDLRSYYFDPNGSLDINGLQKQQESSQYIHCE-NCG 77 (99)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCCCCTTSCSCTTSCCCCCTTSCEEECT-TTC
T ss_pred HHHHHHHHHHHhccCCCCCCceecCCCCcccCCCcCcccCCCeEECC-CCC
Confidence 4444555555677778888776666667777776444 455667885 665
No 2
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=14.77 E-value=62 Score=18.07 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=8.6
Q ss_pred cccccccCCCCCcc
Q 032148 47 VGFGIEKMEPLWRC 60 (146)
Q Consensus 47 ~gf~~~~~~~~f~C 60 (146)
+||-+.+....-.|
T Consensus 7 ygfcslpilknglc 20 (33)
T 1g1p_A 7 YGFCSLPILKNGLC 20 (33)
T ss_dssp TSBCCCSSSSCCCB
T ss_pred ccceechhhcCCcc
Confidence 78876666554444
No 3
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=14.16 E-value=43 Score=18.49 Aligned_cols=9 Identities=56% Similarity=1.686 Sum_probs=5.3
Q ss_pred cchhhh-hHh
Q 032148 59 RCVQGC-GAC 67 (146)
Q Consensus 59 ~C~~gC-G~C 67 (146)
.|+.+| |.|
T Consensus 7 tcpsgcsgdc 16 (31)
T 2hm3_A 7 TCPSGCSGDC 16 (31)
T ss_dssp CCCTTCCGGG
T ss_pred cCCCCcCccc
Confidence 466666 554
No 4
>1s6w_A Hepcidin; two strand antiparalell beta sheet, antibiotic; NMR {Synthetic} SCOP: j.3.1.8
Probab=10.62 E-value=42 Score=18.20 Aligned_cols=9 Identities=56% Similarity=1.959 Sum_probs=6.7
Q ss_pred hhhHhcCCC
Q 032148 63 GCGACCKLD 71 (146)
Q Consensus 63 gCG~CC~~~ 71 (146)
+||.||+..
T Consensus 14 gCG~CC~f~ 22 (26)
T 1s6w_A 14 GCGVCCRFX 22 (26)
T ss_dssp SCEEECCC-
T ss_pred eecCccccc
Confidence 599999863
No 5
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=10.03 E-value=44 Score=18.10 Aligned_cols=8 Identities=63% Similarity=1.713 Sum_probs=5.9
Q ss_pred hhhHhcCC
Q 032148 63 GCGACCKL 70 (146)
Q Consensus 63 gCG~CC~~ 70 (146)
+||.||+.
T Consensus 18 ~CG~cC~~ 25 (26)
T 1m4f_A 18 KCGMCCKT 25 (26)
T ss_dssp SEEEECCC
T ss_pred CcCCeeCC
Confidence 67888873
No 6
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=10.90 E-value=82 Score=18.67 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=9.7
Q ss_pred CCCcchhhhhHh
Q 032148 56 PLWRCVQGCGAC 67 (146)
Q Consensus 56 ~~f~C~~gCG~C 67 (146)
....|.+.||.|
T Consensus 29 ~r~~C~kTCG~C 40 (40)
T 2lg4_A 29 LRANCKKTCGLC 40 (40)
Confidence 567898899987
No 7
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=7.23 E-value=90 Score=19.24 Aligned_cols=12 Identities=42% Similarity=1.057 Sum_probs=8.3
Q ss_pred CCcchhhhhHhcC
Q 032148 57 LWRCVQGCGACCK 69 (146)
Q Consensus 57 ~f~C~~gCG~CC~ 69 (146)
.-.|. +||.|=.
T Consensus 8 ~~~Ci-gCg~C~~ 19 (81)
T 1iqz_A 8 KETCI-ACGACGA 19 (81)
T ss_dssp TTTCC-CCSHHHH
T ss_pred cccCc-ccChhhH
Confidence 34685 8998844
No 8
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=6.87 E-value=97 Score=17.92 Aligned_cols=10 Identities=30% Similarity=1.119 Sum_probs=6.9
Q ss_pred CcchhhhhHhc
Q 032148 58 WRCVQGCGACC 68 (146)
Q Consensus 58 f~C~~gCG~CC 68 (146)
-.|. +||.|=
T Consensus 9 ~~C~-~Cg~C~ 18 (64)
T 1dax_A 9 DECI-ACESCV 18 (64)
T ss_dssp TTCC-SCCHHH
T ss_pred ccCC-CchHHH
Confidence 3584 888884
No 9
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=6.39 E-value=1e+02 Score=17.58 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=6.7
Q ss_pred CcchhhhhHhc
Q 032148 58 WRCVQGCGACC 68 (146)
Q Consensus 58 f~C~~gCG~CC 68 (146)
-.|. +||.|=
T Consensus 9 ~~C~-~C~~C~ 18 (66)
T 1sj1_A 9 DTCI-GDAICA 18 (66)
T ss_dssp TTCC-CCCHHH
T ss_pred ccCc-CchHHH
Confidence 3584 888873
No 10
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=5.83 E-value=79 Score=16.96 Aligned_cols=16 Identities=38% Similarity=1.026 Sum_probs=9.1
Q ss_pred ccccccCCCCCcchhhh
Q 032148 48 GFGIEKMEPLWRCVQGC 64 (146)
Q Consensus 48 gf~~~~~~~~f~C~~gC 64 (146)
||-++.-...|.| .+|
T Consensus 12 gfcgdncgnswac-sgc 27 (27)
T 2hgo_A 12 GFCGDNCGNSWAC-SGC 27 (27)
T ss_dssp TEEECSSSCEEEC-SCC
T ss_pred ccccCCcCCcccc-cCC
Confidence 5545555556777 365
Done!