Query 032149
Match_columns 146
No_of_seqs 121 out of 778
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m7n_A Putative uncharacterize 100.0 4.1E-33 1.4E-37 212.4 15.7 122 8-143 1-124 (179)
2 2nn6_I 3'-5' exoribonuclease C 100.0 7.2E-34 2.5E-38 221.5 9.2 133 7-145 18-150 (209)
3 2je6_I RRP4, exosome complex R 100.0 1.2E-28 4.2E-33 196.6 12.9 119 7-145 15-136 (251)
4 2ba0_A Archeal exosome RNA bin 100.0 3.1E-28 1.1E-32 191.9 14.1 116 8-145 2-117 (229)
5 2z0s_A Probable exosome comple 99.9 3.4E-28 1.1E-32 192.2 8.0 119 8-145 9-129 (235)
6 2nn6_H Exosome complex exonucl 99.9 5.7E-28 1.9E-32 197.6 8.7 124 6-145 37-164 (308)
7 2nn6_G Exosome complex exonucl 99.9 1.4E-27 4.9E-32 193.7 10.6 121 8-145 39-185 (289)
8 2ja9_A Exosome complex exonucl 99.5 2.2E-14 7.7E-19 108.7 8.8 65 70-145 1-66 (175)
9 2k4k_A GSP13, general stress p 99.0 1.8E-09 6E-14 77.7 9.8 62 74-145 5-66 (130)
10 2k52_A Uncharacterized protein 99.0 2E-09 6.9E-14 71.0 9.1 58 74-145 3-60 (80)
11 2eqs_A ATP-dependent RNA helic 99.0 1.8E-09 6.3E-14 74.6 7.9 64 72-145 8-75 (103)
12 2cqo_A Nucleolar protein of 40 99.0 1.7E-09 5.7E-14 76.9 7.7 66 70-145 16-82 (119)
13 2khj_A 30S ribosomal protein S 99.0 1.6E-09 5.4E-14 75.5 7.4 65 71-145 26-90 (109)
14 2khi_A 30S ribosomal protein S 99.0 4.6E-09 1.6E-13 73.9 9.8 75 61-145 15-90 (115)
15 1kl9_A Eukaryotic translation 98.9 3.2E-09 1.1E-13 80.6 8.9 66 72-145 11-76 (182)
16 2a19_A EIF-2- alpha, eukaryoti 98.9 5.4E-09 1.9E-13 78.9 9.4 64 72-145 11-76 (175)
17 3aev_A Translation initiation 98.8 4.1E-08 1.4E-12 78.9 10.2 65 71-145 6-72 (275)
18 1luz_A Protein K3, protein K2; 98.7 1.8E-08 6.3E-13 67.9 5.9 61 73-145 8-71 (88)
19 1q8k_A Eukaryotic translation 98.7 4.8E-08 1.6E-12 79.7 8.2 64 72-145 9-74 (308)
20 3cw2_C Translation initiation 98.6 5.2E-08 1.8E-12 77.9 5.4 65 71-145 6-72 (266)
21 1go3_E DNA-directed RNA polyme 98.5 2.5E-07 8.7E-12 69.7 8.0 65 72-145 77-150 (187)
22 1wi5_A RRP5 protein homolog; S 98.4 3.9E-07 1.3E-11 64.1 6.2 64 73-145 18-82 (119)
23 2c35_B Human RPB7, DNA-directe 98.4 1E-06 3.4E-11 65.7 7.9 65 72-145 77-151 (172)
24 4ayb_E DNA-directed RNA polyme 98.4 1.6E-06 5.3E-11 65.0 8.7 65 72-145 77-150 (180)
25 1y14_B B16, RPB7, DNA-directed 98.2 5.3E-06 1.8E-10 61.8 8.5 64 73-145 80-151 (171)
26 3psi_A Transcription elongatio 98.1 5.6E-06 1.9E-10 77.8 8.2 64 72-145 898-962 (1219)
27 4aid_A Polyribonucleotide nucl 98.1 4E-07 1.4E-11 81.6 0.0 64 72-145 633-696 (726)
28 3h0g_G DNA-directed RNA polyme 98.1 2.2E-06 7.4E-11 64.1 3.9 65 72-145 80-152 (172)
29 2b8k_G B16, DNA-directed RNA p 98.0 1.1E-05 3.7E-10 62.6 7.2 65 72-145 79-151 (215)
30 3go5_A Multidomain protein wit 98.0 1.5E-05 5.3E-10 64.1 7.8 54 74-145 150-204 (285)
31 3bzc_A TEX; helix-turn-helix, 97.9 4.8E-06 1.7E-10 75.2 3.2 62 74-145 652-713 (785)
32 3cdi_A Polynucleotide phosphor 97.8 2.4E-06 8.3E-11 76.6 0.0 64 72-145 623-686 (723)
33 1hh2_P NUSA, N utilization sub 97.8 9.7E-05 3.3E-09 61.0 9.3 58 71-145 129-186 (344)
34 3ayh_B DNA-directed RNA polyme 97.8 7.6E-05 2.6E-09 57.1 7.8 65 72-145 77-158 (203)
35 3psf_A Transcription elongatio 97.8 3.3E-06 1.1E-10 78.2 0.0 63 73-145 902-965 (1030)
36 2ckz_B C25, DNA-directed RNA p 97.7 0.00011 3.7E-09 57.0 7.3 66 72-145 77-154 (218)
37 2asb_A Transcription elongatio 97.6 0.00012 4.2E-09 58.0 7.2 58 72-145 3-67 (251)
38 1e3p_A Guanosine pentaphosphat 97.6 3E-06 1E-10 76.3 -2.6 64 72-145 663-730 (757)
39 1k0r_A NUSA; two component arr 97.5 0.00019 6.6E-09 59.6 7.2 59 71-145 125-190 (366)
40 2bx2_L Ribonuclease E, RNAse E 97.4 0.00051 1.7E-08 59.5 8.6 63 74-144 43-114 (517)
41 2bh8_A 1B11; transcription, mo 96.1 0.0048 1.6E-07 42.0 3.8 40 73-120 58-97 (101)
42 3go5_A Multidomain protein wit 95.9 0.027 9.1E-07 45.1 7.6 35 75-118 5-39 (285)
43 3d0f_A Penicillin-binding 1 tr 95.7 0.059 2E-06 36.5 7.9 60 73-140 30-93 (106)
44 2id0_A Exoribonuclease 2; RNAs 95.2 0.043 1.5E-06 48.4 7.2 65 74-145 556-632 (644)
45 3v2d_0 50S ribosomal protein L 93.6 0.1 3.6E-06 34.5 4.5 60 3-67 23-84 (85)
46 3r8s_W 50S ribosomal protein L 92.5 0.14 4.8E-06 33.3 3.7 60 3-66 14-75 (76)
47 2zjr_T 50S ribosomal protein L 91.6 0.17 5.8E-06 33.9 3.4 60 3-67 23-84 (91)
48 2vnu_D Exosome complex exonucl 91.3 0.31 1.1E-05 43.7 6.0 60 78-145 671-746 (760)
49 2wp8_J Exosome complex exonucl 90.1 0.47 1.6E-05 43.9 6.0 60 77-144 887-962 (977)
50 2rf4_A DNA-directed RNA polyme 89.7 1.1 3.8E-05 34.0 7.1 65 73-145 126-200 (214)
51 1y71_A Kinase-associated prote 87.7 2.4 8.1E-05 30.1 7.0 27 74-100 8-43 (130)
52 2ftc_O L27MT, MRP-L27, mitocho 86.7 0.66 2.3E-05 29.5 3.4 44 3-47 23-68 (69)
53 2qf4_A Cell shape determining 75.2 6.8 0.00023 28.6 5.8 59 80-138 47-116 (172)
54 3bbo_X Ribosomal protein L27; 66.3 0.32 1.1E-05 36.7 -3.2 60 3-67 80-141 (198)
55 2j5u_A MREC protein; bacterial 62.4 16 0.00056 28.2 5.9 60 79-138 108-177 (255)
56 2ja9_A Exosome complex exonucl 61.2 9.6 0.00033 28.0 4.1 29 71-100 49-77 (175)
57 3h8z_A FragIle X mental retard 53.2 54 0.0019 22.8 7.2 63 60-140 6-70 (128)
58 1yez_A MM1357; MAR30, autostru 51.7 20 0.0007 21.6 3.9 22 75-96 45-66 (68)
59 1yvc_A MRR5; structure, autost 49.5 23 0.00079 21.6 3.9 22 75-96 47-68 (70)
60 2z1c_A Hydrogenase expression/ 48.1 46 0.0016 21.0 5.2 16 81-96 6-21 (75)
61 2dgy_A MGC11102 protein; EIF-1 44.7 55 0.0019 22.2 5.5 56 71-142 9-65 (111)
62 2oqk_A Putative translation in 37.1 54 0.0019 22.3 4.6 24 72-96 27-51 (117)
63 1xjv_A Protection of telomeres 36.3 1.2E+02 0.004 23.5 7.0 15 126-140 63-77 (294)
64 1a62_A RHO; transcription term 34.2 22 0.00074 24.8 2.2 44 60-103 77-123 (130)
65 2a19_A EIF-2- alpha, eukaryoti 31.8 39 0.0013 24.6 3.3 70 13-96 15-84 (175)
66 1fr3_A MOP, molybdate/tungstat 31.0 46 0.0016 19.1 3.1 52 78-142 7-59 (67)
67 2r7d_A Ribonuclease II family 30.3 1.6E+02 0.0056 24.5 7.3 49 75-145 402-450 (469)
68 2ckk_A KIN17; beta barrel, rib 29.2 1.2E+02 0.0041 20.8 5.3 60 28-96 31-105 (127)
69 2do3_A Transcription elongatio 28.9 30 0.001 21.7 1.9 13 126-138 13-25 (69)
70 2ot2_A Hydrogenase isoenzymes 28.5 1.1E+02 0.0039 19.8 4.9 17 80-96 5-21 (90)
71 2nn6_I 3'-5' exoribonuclease C 26.4 87 0.003 23.3 4.5 23 74-96 136-160 (209)
72 2nn6_G Exosome complex exonucl 25.7 44 0.0015 26.4 2.8 19 73-91 170-188 (289)
73 4gop_B Putative uncharacterize 24.2 1.5E+02 0.0053 19.9 5.2 13 128-140 82-94 (136)
74 2je6_I RRP4, exosome complex R 22.8 1E+02 0.0035 23.6 4.4 19 73-91 121-139 (251)
75 1ah9_A IF1, initiation factor 22.4 76 0.0026 19.3 3.0 17 80-96 8-25 (71)
76 1xne_A Hypothetical protein PF 21.0 88 0.003 21.2 3.3 17 128-144 32-54 (113)
77 1gut_A Mopii, molybdate bindin 20.3 89 0.0031 18.0 2.9 53 78-142 7-60 (68)
No 1
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=100.00 E-value=4.1e-33 Score=212.44 Aligned_cols=122 Identities=23% Similarity=0.378 Sum_probs=113.9
Q ss_pred CcEEecCCccCCCCCeeeCCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEE
Q 032149 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKV 87 (146)
Q Consensus 8 ~~iV~PGd~l~~~~~~~~G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p~~~~~~~P~~GdiViG~V~~v 87 (146)
|++|+|||.|+.+++|.+|+|||++ +|+|+||++|.+++. ++.++|.|.++.+|.|+ ||+|+|+|+++
T Consensus 1 m~iV~PGd~l~~~~~~~~G~Gty~~--~~~i~as~~G~v~~~---------~~~v~V~~~~~~~y~p~-GdiV~G~V~~V 68 (179)
T 3m7n_A 1 MRFVMPGDRIGSAEEYVKGEGVYEE--GGELFAAVAGKLIIK---------DRVAKVESISPIPEIVK-GDVVLGRVVDL 68 (179)
T ss_dssp CCEECTTCEEEETTTSEECTTEEEE--TTEEEESSSEEEEEE---------TTEEEEEESSCCCCCCT-TCEEEEEEEEE
T ss_pred CeEEcCCCCCCCCCCEeccCCEEEe--CCEEEEEEEEEEEEe---------CCEEEEEECCCCcccCC-CCEEEEEEEEE
Confidence 5799999999998999999999999 999999999999984 47999999877789999 99999999999
Q ss_pred ecceEEEEEEee--cccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEE
Q 032149 88 MTRMASADIMCV--GAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVS 143 (146)
Q Consensus 88 ~~~~~~v~I~~v--~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis 143 (146)
++++|+|+|.++ +++++..+++|+||+||++..+.+ +|+++|++||+|+|+|++
T Consensus 69 ~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~--~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 69 RNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVK--EISEAVGYLDILKARVIG 124 (179)
T ss_dssp CSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCS--SGGGTCCTTCEEEEEEEE
T ss_pred eCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhh--CHhhcCCCCCEEEEEEEC
Confidence 999999999998 557788899999999999988877 999999999999999997
No 2
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=100.00 E-value=7.2e-34 Score=221.48 Aligned_cols=133 Identities=38% Similarity=0.617 Sum_probs=118.6
Q ss_pred CCcEEecCCccCCCCCeeeCCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEE
Q 032149 7 EMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTK 86 (146)
Q Consensus 7 ~~~iV~PGd~l~~~~~~~~G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p~~~~~~~P~~GdiViG~V~~ 86 (146)
++++|+|||.|+..++|++|+|||++ +|+||||++|.+.+.. .+..+++++|.|.++.+|.|++||+|+|+|++
T Consensus 18 ~~~iV~PGd~l~~~~~~~~G~Gty~~--~g~I~Asv~G~v~~~~----~~~~~~vi~V~p~~~~~y~p~vGDvV~G~V~~ 91 (209)
T 2nn6_I 18 PVRYCIPGERLCNLEEGSPGSGTYTR--HGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQLLPDVGAIVTCKVSS 91 (209)
T ss_dssp --CCCCTTCEEEETTTCCCSSSCEEE--TTEEECCSCSCBCCCB----CTTSSBC-CBCCSCCCCCCCCTTCEEEEEEEE
T ss_pred CCcEEcCCCCCCCCCCeeecCCEEEE--CCEEEEEEEEEEEEec----cCCcccEEEEecCCCCcCCCCCCCEEEEEEEE
Confidence 46799999999988899999999999 9999999999987631 12234679999987667999999999999999
Q ss_pred EecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 87 VMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 87 v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
+++++|+|+|.+++++.|..+|+|+||+||++.++.++.+|+++|++||+|+|+|+++.
T Consensus 92 v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~ 150 (209)
T 2nn6_I 92 INSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLG 150 (209)
T ss_dssp ECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEE
T ss_pred EECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEe
Confidence 99999999999999999999999999999999999988999999999999999999975
No 3
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=99.96 E-value=1.2e-28 Score=196.58 Aligned_cols=119 Identities=22% Similarity=0.267 Sum_probs=107.9
Q ss_pred CCcEEecCCccCCCCCeeeCC--cEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEE
Q 032149 7 EMVLVTPGEVLGKATEVKAGK--GAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARV 84 (146)
Q Consensus 7 ~~~iV~PGd~l~~~~~~~~G~--Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p~~~~~~~P~~GdiViG~V 84 (146)
++++|+|||.|+. ++|.+|+ |||.+ +|+||||++|.+... ++.++|.|.++.+|.|++||+|+|+|
T Consensus 15 ~~~iV~PGd~l~~-~~~~~G~~~Gty~~--~g~i~as~~G~v~~~---------~~~v~V~p~~~~~y~p~~GDiV~G~V 82 (251)
T 2je6_I 15 PRSIVVPGELLAE-GEFQIPWSPYILKI--NSKYYSTVVGLFDVK---------DTQFEVIPLEGSFYYPKINDIVIGLV 82 (251)
T ss_dssp SSCEECTTCEEEE-ECCCCCCCTTEEEE--TTEEEECSSEEEEEE---------TTEEEEEESCCSCCCCCTTCEEEEEE
T ss_pred CCcEEcCCCCCcc-CCeeeCCCCCEEEE--CCEEEEEEEEEEEEe---------CCEEEEEECCCcccCCCCCCEEEEEE
Confidence 3689999999996 6799999 99999 999999999999884 25899999977689999999999999
Q ss_pred EEEecceEEEEEEeecccccccceeeEEeccccccccccc-cccccCCCCCCEEEEEEEEee
Q 032149 85 TKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDK-VDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 85 ~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~-~~~~~~~~~GDiV~A~Vis~~ 145 (146)
++++++.|+|+| ..+++|+||.++++..+.+. .+|+++|++||+|+|+|+++.
T Consensus 83 ~~v~~~ga~VdI--------~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~ 136 (251)
T 2je6_I 83 EDVEIYGWVVDI--------KAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFD 136 (251)
T ss_dssp EEECSSEEEEEC--------SSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEE
T ss_pred EEEeCceEEEEc--------CCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEEC
Confidence 999999999998 67899999999998766544 699999999999999999975
No 4
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.96 E-value=3.1e-28 Score=191.92 Aligned_cols=116 Identities=26% Similarity=0.359 Sum_probs=103.7
Q ss_pred CcEEecCCccCCCCCeeeCCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEE
Q 032149 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKV 87 (146)
Q Consensus 8 ~~iV~PGd~l~~~~~~~~G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p~~~~~~~P~~GdiViG~V~~v 87 (146)
+++|+|||.|+. ++|++|+|||.+ +|+|+||++|.+... ++.++|.|.+ .+|.|++||+|+|+|+++
T Consensus 2 ~~iV~PGd~l~~-~~~~~G~Gty~~--~g~i~as~~G~v~~~---------~~~v~V~p~~-~~y~p~~GDiV~G~V~~v 68 (229)
T 2ba0_A 2 RKIVLPGDLLST-NPRAAGYGTYVE--GGKVYAKIIGLFDQT---------ETHVRVIPLK-GRYTPSVGDVVIGIIREV 68 (229)
T ss_dssp CCEECTTCEEES-CTTSBCTTEEEE--TTEEEECSSEEEEEC---------SSCEEEEECS-SSCCCCTTCEEEEEEEEE
T ss_pred CCEEcCCCCccc-CCeEecCCEEEe--CCEEEEEEEEEEEEe---------CCEEEEEeCC-CcccCCCCCEEEEEEEEE
Confidence 579999999985 679999999999 999999999999884 2479999986 579999999999999999
Q ss_pred ecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 88 MTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 88 ~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
++++|+|+| ..+++|+||.++++. ..+..+|+++|++||+|+|||+++.
T Consensus 69 ~~~~a~V~I--------~~~~~g~l~isev~~-~~~~~~~~~~l~~GD~V~arVi~v~ 117 (229)
T 2ba0_A 69 AANGWAVDI--------YSPYQAFLPVSENPE-MKPNKKPNEVLDIGDAIIAKVLNID 117 (229)
T ss_dssp CSSEEEEEC--------SSSSCEEEEGGGCTT-CCTTSCGGGTCCTTCEEEEEEEEEC
T ss_pred eCCeEEEEe--------CCCeEEEEEHHHccc-cccccchhcccCCCCEEEEEEEEEC
Confidence 999999998 778999999999983 2234589999999999999999974
No 5
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=99.95 E-value=3.4e-28 Score=192.24 Aligned_cols=119 Identities=26% Similarity=0.275 Sum_probs=61.2
Q ss_pred CcEEecCCccCCCCCeeeCCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEE
Q 032149 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKV 87 (146)
Q Consensus 8 ~~iV~PGd~l~~~~~~~~G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p~~~~~~~P~~GdiViG~V~~v 87 (146)
+++|+|||.|+. ++|.+|+|||.+ +|.|+||++|.+... +++..++|.|.+ .+|.|++||+|+|+|+++
T Consensus 9 ~~iV~PGd~l~~-~~~~~G~Gty~~--~~~I~Asv~G~v~~~-------~~~~~vsV~p~~-~~y~p~~GDiV~G~V~~v 77 (235)
T 2z0s_A 9 GRIVVPGEPLPE-EVEASPPYVIDY--KGVKRATVVGLLREK-------GDGGGRAFVKLK-EIYVPQAGDVVIGLIQSV 77 (235)
T ss_dssp --------------------------------------------------------------CCCCCCTTCCEEEEEEEE
T ss_pred CcEEeCCCCccc-CceEcCCCEEEE--CCEEEEEEeEEEEEe-------CCccEEEEEeCC-CccCCCCCCEEEEEEEEE
Confidence 479999999986 669999999999 999999999998773 234589999985 569999999999999999
Q ss_pred ecceEEEEEEeecccccccceeeEEecccccc--ccccccccccCCCCCCEEEEEEEEee
Q 032149 88 MTRMASADIMCVGAKSVREKFSGIIRQQDVRA--TEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 88 ~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~--~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
++++|+|+| ..+++|+||.+|+.. .+.+..+|+++|++||+|+|+|+++.
T Consensus 78 ~~~~~~V~I--------~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~ 129 (235)
T 2z0s_A 78 GIMNWFVDI--------NSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFD 129 (235)
T ss_dssp CSSEEEEEC--------SSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEEC
T ss_pred eCCeEEEEe--------CCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEEC
Confidence 999999998 778999999999964 33455699999999999999999974
No 6
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.95 E-value=5.7e-28 Score=197.59 Aligned_cols=124 Identities=22% Similarity=0.352 Sum_probs=95.7
Q ss_pred cCCcEEecCCccCCCCCeeeCCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEE
Q 032149 6 EEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVT 85 (146)
Q Consensus 6 ~~~~iV~PGd~l~~~~~~~~G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p~~~~~~~P~~GdiViG~V~ 85 (146)
..+++|+|||.|+..++|++|+|||++ +|+||||++|.++.. ++.++|.|.+ .+|+|++||+|+|+|+
T Consensus 37 ~~~~iVlPGd~L~~~~~~~~G~Gty~~--~g~I~Asv~G~v~~~---------~~~vsV~p~~-~rY~P~vGDvViG~Vt 104 (308)
T 2nn6_H 37 TKKHLVVPGDTITTDTGFMRGHGTYMG--EEKLIASVAGSVERV---------NKLICVKALK-TRYIGEVGDIVVGRIT 104 (308)
T ss_dssp ---CBCCTTCBCCCCTTCCBCTTEEEC--SSSEEECSSEEEEEE---------TTEEEEEESS-CCCCCCSSBCCCEEEE
T ss_pred CCCcEEeCCCCCCCCCCEeecCCeEEE--CCEEEEEEEEEEEec---------CCEEEEeeCC-CccCCCCCCEEEEEEE
Confidence 356899999999988999999999999 999999999999874 4699999986 5799999999999999
Q ss_pred EEecceEEEEEEeeccccccc---ce-eeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 86 KVMTRMASADIMCVGAKSVRE---KF-SGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 86 ~v~~~~~~v~I~~v~~~~l~~---~~-~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
++++++|+|+|.+..+..+.. .| .|++|.++. .|..+|+++|++||+|+|||++++
T Consensus 105 ~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~----~D~~~m~~~l~vGDlV~ArVisv~ 164 (308)
T 2nn6_H 105 EVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSA----EDELAMRGFLQEGDLISAEVQAVF 164 (308)
T ss_dssp EEETTEEEEECSSSSCEEEESSCCC-----------------CHHHHHHSCSSCEECCEEEEEE
T ss_pred EEeCceEEEEECCCcCCceechhhccccceeecccc----hhhhhhhccCCCCCEEEEEEEEcC
Confidence 999999999996544432221 23 355554433 344689999999999999999975
No 7
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.95 E-value=1.4e-27 Score=193.68 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=92.9
Q ss_pred CcEEecCCccCCCC-----------------------Ceee--CCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeE
Q 032149 8 MVLVTPGEVLGKAT-----------------------EVKA--GKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTV 62 (146)
Q Consensus 8 ~~iV~PGd~l~~~~-----------------------~~~~--G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i 62 (146)
+++|+|||.|+..+ +|++ |+|||+. ++.|+||++|.++..+... ....+.+
T Consensus 39 ~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~~--~~~I~as~aG~l~~~~~~~--~~~~~~v 114 (289)
T 2nn6_G 39 GQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRC--GDRLLVTKCGRLRHKEPGS--GSGGGVY 114 (289)
T ss_dssp SSBCCSSEEECCSCSCCEECSSEEECC-------------------------CCCEEECSCCEEEEECCTT--TSSCCEE
T ss_pred CcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEEE--CCEEEEEEeEeEEeccCCc--cCccceE
Confidence 57899999999765 7999 9999999 9999999999998853100 0011489
Q ss_pred EEecCCCCCCCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccc-cccccccccccCCCCCCEEEEEE
Q 032149 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVR-ATEIDKVDMHLSFRPGDIVRASV 141 (146)
Q Consensus 63 ~V~p~~~~~~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~-~~~~d~~~~~~~~~~GDiV~A~V 141 (146)
+|.|.+ .+|+|++||+|+|+|++++.++|+|+| ..++.|+||.++++ ++ . +|+++|++||+|+|||
T Consensus 115 ~V~~~~-~rYiP~vGDiVIG~Vt~v~~~~~~VdI--------~s~~~a~L~~~~f~Gat--k--~~r~~f~~GDlV~ArV 181 (289)
T 2nn6_G 115 WVDSQQ-KRYVPVKGDHVIGIVTAKSGDIFKVDV--------GGSEPASLSYLSFEGAT--K--RNRPNVQVGDLIYGQF 181 (289)
T ss_dssp EEECCC-SSCCCCSSEEEEEEEEEEETTEEEEEC--------SSSSCCCEESCSSSCCS--S--CSSSSSCTTCEEEEEE
T ss_pred EEEecC-CCCCCCCCCEEEEEEEEEeCcEEEEEE--------CCCceeEEehhhcCcch--h--hhhhhcCCCCEEEEEE
Confidence 999986 689999999999999999999999999 57899999999887 33 3 7999999999999999
Q ss_pred EEee
Q 032149 142 VSFM 145 (146)
Q Consensus 142 is~~ 145 (146)
++++
T Consensus 182 ~s~~ 185 (289)
T 2nn6_G 182 VVAN 185 (289)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9975
No 8
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=99.54 E-value=2.2e-14 Score=108.69 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCCCCCCCCEEEEEEEEEecceEEEEEEeeccccccc-ceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 70 ~~~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~-~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
++|+|++||+|+|+|+++.++.|+|+| .. ++.|+||.+++.. .. .+|+++|++||+|+|||+++.
T Consensus 1 krY~P~~gDvViG~V~~v~~~~~~VdI--------~~~~~~a~L~~s~~~g-~~--k~~r~~l~~GDlV~ArV~~~~ 66 (175)
T 2ja9_A 1 KRYIPSVNDFVIGVIIGTFSDSYKVSL--------QNFSSSVSLSYMAFPN-AS--KKNRPTLQVGDLVYARVCTAE 66 (175)
T ss_dssp CCCCCCTTCEEEEEEEEECSSEEEEES--------STTSCCEEEETTSSTT-CC--SSSCCCCCTTCEEEEEEEECC
T ss_pred CCccCCCcCEEEEEEEEEECcEEEEEE--------CCCCccEEEEHHHCCc-hh--hhhhccCCCCCEEEEEEEEec
Confidence 379999999999999999999999999 66 8999999998862 22 379999999999999999874
No 9
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.03 E-value=1.8e-09 Score=77.74 Aligned_cols=62 Identities=24% Similarity=0.297 Sum_probs=56.6
Q ss_pred CCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 74 P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
+++|++|.|+|+++++..|+|+| .....|++|++++...+.. ++.+.|++||.|.|+|+++.
T Consensus 5 ~~vG~iv~G~V~~i~~~G~FV~l--------~~~~~Glihisel~~~~~~--~~~~~~~vGd~V~vkV~~vd 66 (130)
T 2k4k_A 5 FEVGSVYTGKVTGLQAYGAFVAL--------DEETQGLVHISEVTHGFVK--DINEHLSVGDEVQVKVLAVD 66 (130)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEE--------ETTEEEEEEGGGTSSSCCS--CGGGTCCTTCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEeCCeEEEEE--------CCCcEEEEEHHHCCccccc--CccccCCCCCEEEEEEEEEe
Confidence 68999999999999999999999 5679999999999876666 78999999999999999874
No 10
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.02 E-value=2e-09 Score=71.03 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=51.1
Q ss_pred CCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 74 P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
+++|+++.|+|+++.+..|+|+| .....|++|.+++..... +.|++||.|+|+|+++.
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l--------~~~~~Gllh~sel~~~~~------~~~~~Gd~V~v~V~~vd 60 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINL--------NEQVRGLLRPRDMISLRL------ENLNVGDEIIVQAIDVR 60 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEE--------ETTEEEEECGGGCSSCCG------GGCCTTCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEE--------CCCCEEEEEHHHCCcccc------eeeCCCCEEEEEEEEEE
Confidence 68999999999999999999999 557999999999864321 78999999999999874
No 11
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.8e-09 Score=74.63 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=54.8
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeeccccccc---ceeeEEecccc-ccccccccccccCCCCCCEEEEEEEEee
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE---KFSGIIRQQDV-RATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~---~~~g~l~~sdi-~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
..+++|+++.|+|+++.+..|+|+| .. ...|++|++++ ...... ++.+.|++||.|+++|+++.
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l--------~~~~~~~~Glvhisel~~~~~~~--~~~~~~~~Gd~V~VkV~~vd 75 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQL--------EGLRKRWEGLVHISELRREGRVA--NVADVVSKGQRVKVKVLSFT 75 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEE--------CSSSSCCEEEECGGGTSSSSCCC--CHHHHCCTTCEEEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEE--------cCCCCCeEEEEEHHHCCCCcccC--CcccEeCCCCEEEEEEEEEE
Confidence 3479999999999999999999999 43 68999999999 333344 77889999999999999864
No 12
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.7e-09 Score=76.87 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=57.2
Q ss_pred CCCCCCCCCEEEEEEEEEecceEEEEEEeeccccccc-ceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 70 ~~~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~-~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
-.+.|++|+++.|+|++|.+..|+|+| .. ...|++|++++...+.+ ++.+.|++||.|+|+|+++.
T Consensus 16 ~~~~~~vG~iv~G~V~~I~~fGaFV~l--------~g~~~~Glvhisel~~~~~~--~~~~~~~~Gd~V~VkV~~vd 82 (119)
T 2cqo_A 16 MENLPALYTIFQGEVAMVTDYGAFIKI--------PGCRKQGLVHRTHMSSCRVD--KPSEIVDVGDKVWVKLIGRE 82 (119)
T ss_dssp SCCSCCTTCEEEEEEEEEETTEEEEEC--------TTCSSCEEEEHHHHCSSCCS--CHHHHCCTTCEEEEEEEEEE
T ss_pred hhcccCCCCEEEEEEEEEeCceEEEEE--------CCCcEEEEEEHHHCCccccc--ChhhcCCCCCEEEEEEEEEe
Confidence 346689999999999999999999998 33 36999999999766655 78899999999999999874
No 13
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.97 E-value=1.6e-09 Score=75.49 Aligned_cols=65 Identities=22% Similarity=0.374 Sum_probs=57.4
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 71 ~~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
...+++|++|.|+|+++.+..|+|+| .....|++|.+++.....+ ++.+.|++||.|.|+|+++.
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~G~fV~l--------~~~~~Gll~~sel~~~~~~--~~~~~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAKGATVEL--------ADGVEGYLRASEASRDRVE--DATLVLSVGDEVEAKFTGVD 90 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSSCEEEEC--------STTCBCCBCTTCCCSSSSS--SGGGSCCTTCEEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEEECCeEEEEE--------CCCCEEEEEHHHcCccccc--ChhhccCCCCEEEEEEEEEE
Confidence 34589999999999999999999999 5578999999999766555 78899999999999999874
No 14
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.97 E-value=4.6e-09 Score=73.89 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=58.7
Q ss_pred eEEEecCCCCCCCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccc-cccccccccCCCCCCEEEE
Q 032149 61 TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRAT-EIDKVDMHLSFRPGDIVRA 139 (146)
Q Consensus 61 ~i~V~p~~~~~~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~-~~d~~~~~~~~~~GDiV~A 139 (146)
...+.|......-+++|+++.|+|+++++..|+|+| .....|++|.+++... ... ++.+.|++||.|++
T Consensus 15 ~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l--------~~~~~Glvhisel~~~~~~~--~~~~~~~vGd~V~v 84 (115)
T 2khi_A 15 VPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI--------EEGVEGLVHVSEMDWTNKNI--HPSKVVNVGDVVEV 84 (115)
T ss_dssp ------CCCSSCSSCSSCEEEEEEEEEETTEEEEEC--------STTCEEEEETTSSSCSSTTC--SSTTTCCTTCEEEE
T ss_pred hcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEE--------CCCCEEEEEHHHCCcccccc--CcccEECCCCEEEE
Confidence 455667655556789999999999999999999998 5579999999998642 233 67889999999999
Q ss_pred EEEEee
Q 032149 140 SVVSFM 145 (146)
Q Consensus 140 ~Vis~~ 145 (146)
+|+++.
T Consensus 85 kV~~vd 90 (115)
T 2khi_A 85 MVLDID 90 (115)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999874
No 15
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.95 E-value=3.2e-09 Score=80.65 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=47.5
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
..|++|++|.|+|+++++..|+|+|.. .....|++|+|++...... ++++.|++||.|.++|+++.
T Consensus 11 ~~p~~G~iv~G~V~~I~~fGaFV~L~e------~~g~eGLvhiSels~~~v~--~~~~~~~vGd~V~VkVl~vD 76 (182)
T 1kl9_A 11 KFPEVEDVVMVNVRSIAEMGAYVSLLE------YNNIEGMILLSELSRRRIR--SINKLIRIGRNECVVVIRVD 76 (182)
T ss_dssp SSCCTTCEEEEEEEEECSSEEEEEETT------TTTEEEEEEGGGC--------------CTTCEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEEeccEEEEEEcc------CCCcEEEEEHHHCCCcccC--CHHHhcCCCCEEEEEEEEEE
Confidence 457999999999999999999999810 1358999999999876666 88999999999999999874
No 16
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.93 E-value=5.4e-09 Score=78.90 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=51.1
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccc--cceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~--~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
..|++|++|.|+|+++++..|+|+| . ....|++|+|++...... ++++.|++||.|.|+|+++.
T Consensus 11 ~~p~~G~iv~G~V~~i~~fGaFV~L--------~e~~gveGLvhiSels~~~v~--~~~~~~~vGd~V~vkVl~vd 76 (175)
T 2a19_A 11 KYPEIDDIVMVNVQQIAEMGAYVKL--------LEYDNIEGMILLSELSRRRIR--SIQKLIRVGKNDVAVVLRVD 76 (175)
T ss_dssp SSCCTTCEEEEEEEEEETTEEEEEE--------TTTTTCEEEEECC----------CCCCCCCTTSEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEEecceEEEEE--------cCCCCcEEEEEHHHcCCcccC--CHHHcCCCCCEEEEEEEEEE
Confidence 5688999999999999999999999 3 458999999999876666 88999999999999999874
No 17
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.77 E-value=4.1e-08 Score=78.88 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=57.4
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEEeecccccc--cceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 71 ~~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~--~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
...|++||+|.|+|+++.+..|+|+| . ....|++|.|++...... ++.+.|++||.|.++|+++.
T Consensus 6 ~~~p~~Gdiv~G~V~~I~~fGaFV~L--------~e~~gieGlIhiSels~~~v~--~~~~~~kvGd~V~vkVi~vD 72 (275)
T 3aev_A 6 REYPEEGEFVVATVKRIHNYGAFLEL--------DEYPGKEAFMHISEVASTWVR--NIRDYLKEGQKVVAKVIRVD 72 (275)
T ss_dssp -CCCCTTCEEEEEEEEEETTEEEEEE--------TTSTTCEEEEEGGGSCSSCCS--CGGGTCCTTCEEEEEEEEEE
T ss_pred ccCCCCCCEEEEEEEEEECcEEEEEE--------CCCCCeEEEEEHHHcCccccc--CHHhccCCCCEEEEEEEEEE
Confidence 35689999999999999999999999 4 368999999999866666 78999999999999999874
No 18
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.73 E-value=1.8e-08 Score=67.89 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=52.6
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEEeeccccccc--ceeeEEecc-ccccccccccccccCCCCCCEEEEEEEEee
Q 032149 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE--KFSGIIRQQ-DVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 73 ~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~--~~~g~l~~s-di~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
.|++|+++.|+|+ +++..|+|+| .. ..+|++|+| ++...+.. +.++.| +||.|+++|+++.
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel--------~~~~~~eGLvhis~el~~~~~~--~~~~~~-~Gd~V~VkV~~vd 71 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYL--------FDYPHFEAILAESVKMHMDRYV--EYRDKL-VGKTVKVKVIRVD 71 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEE--------TTCTTSEEEEGGGSSCCHHHHH--HHHHHH-TTCEEEEEEEEEE
T ss_pred CCCCCCEEEEEEE-EEccEEEEEE--------CCCCCeEEEEEeeHHhCccccc--CHhHEe-CCCEEEEEEEEEE
Confidence 4899999999999 9999999999 42 589999999 99755444 667888 9999999999874
No 19
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.68 E-value=4.8e-08 Score=79.67 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=56.5
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccc--cceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~--~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
..|++|++|.|+|+++.+..|+|+| . ....|++|.|++...... ++.+.|++||.|.++|+++.
T Consensus 9 ~~~~vG~iv~G~V~~I~~fGaFV~L--------~ey~gveGLvhiSels~~~i~--~~~~~~kvGd~V~VkVl~vD 74 (308)
T 1q8k_A 9 KFPEVEDVVMVNVRSIQEMGAYVSL--------LEYNNIEGMIHLSELSRRRIR--SINKLIRIGRNECVKVIRVD 74 (308)
T ss_dssp CCCSSCCEEEEEEEEEETTEEEEES--------CTTTSCCEEECGGGTSCSSCS--CCTTTCSSSCEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEEeCcEEEEEE--------CCCCCeEEEEEhHHcCccccc--CHHHhcCCCCEEEEEEEEEe
Confidence 3478999999999999999999998 4 468899999999765555 88999999999999999874
No 20
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.58 E-value=5.2e-08 Score=77.91 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=57.5
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEEeecccccc--cceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 71 ~~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~--~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
.+.|++|+++.|+|+++.+..|+|+| . ....|++|.|++...... ++.+.|++||.|.++|+++.
T Consensus 6 ~~~~~vG~iv~G~V~~I~~~GaFV~l--------~e~~~~~GlihiSels~~~v~--~~~~~~~vGd~V~VkVi~vd 72 (266)
T 3cw2_C 6 SKLPSEGEILIATVKQVFDYGSYVSL--------DEYGGLQAFLPWSEVSSKWVK--NIRDVLKENRKVIVKVIRVD 72 (266)
T ss_dssp SSSCCTTCEEEEEEEECCSSSBEEEE--------TTTTSEECBBCGGGSSCSSCC--CHHHHSCTTCEEEEEECCCC
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEE--------cCCCCeEEEEEhHHcCccccc--CHHHhCcCCCEEEEEEEEEe
Confidence 46789999999999999999999999 4 468999999999766655 78899999999999998764
No 21
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.54 E-value=2.5e-07 Score=69.72 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=53.6
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEecccccccccc--c-------cccccCCCCCCEEEEEEE
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEID--K-------VDMHLSFRPGDIVRASVV 142 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d--~-------~~~~~~~~~GDiV~A~Vi 142 (146)
+-|++|+++.|+|+++++..++|++ .+++|++|++++...+.. . .+..+.|++||.|+++|+
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~fV~l---------~~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~ 147 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSFVRL---------GPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIV 147 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEC---------SSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEE
T ss_pred EccCCCCEEEEEEEEEeCcEEEEEE---------cCccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEE
Confidence 4589999999999999999999998 348999999998643321 0 146788999999999999
Q ss_pred Eee
Q 032149 143 SFM 145 (146)
Q Consensus 143 s~~ 145 (146)
++.
T Consensus 148 ~vd 150 (187)
T 1go3_E 148 AIS 150 (187)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 22
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.43 E-value=3.9e-07 Score=64.15 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=48.1
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEEeecccccc-cceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVR-EKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 73 ~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~-~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
-+++|+++.|+|+++.+..|+|+| . ....|+++.++...+ ....+..+.|++||.|+|+|+++.
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l--------~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~Gd~V~vkV~~vd 82 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDI--------GVDGTRAFLPLLKAQEY-IRQKNKGAKLKVGQYLNCIVEKVK 82 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEEC--------CCSSCEEEEEHHHHHHH-HHHHSSSCCCCTTCEEEEEEEECC
T ss_pred cCCCCCEEEEEEEEEeCceEEEEE--------CCCCeEEEEEEeccccc-ccccCccCEeCCCCEEEEEEEEEe
Confidence 369999999999999999999999 3 234566665543221 111256789999999999999864
No 23
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.39 E-value=1e-06 Score=65.71 Aligned_cols=65 Identities=25% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccc-ccc---------ccccCCCCCCEEEEEE
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI-DKV---------DMHLSFRPGDIVRASV 141 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~-d~~---------~~~~~~~~GDiV~A~V 141 (146)
+-|.+|+++.|+|+++++..|+|++ .+++|++|++++...+. +.. .....|+.||.|++||
T Consensus 77 ~~~~~Gev~~G~V~~v~~fG~fV~l---------~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV 147 (172)
T 2c35_B 77 FRPFKGEVVDAVVTQVNKVGLFTEI---------GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKI 147 (172)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEE---------TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEE
T ss_pred eeCCCCCEEEEEEEEEeCCEEEEEE---------CCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEE
Confidence 4489999999999999999999998 46889999998853321 110 1255799999999999
Q ss_pred EEee
Q 032149 142 VSFM 145 (146)
Q Consensus 142 is~~ 145 (146)
+++.
T Consensus 148 ~~vd 151 (172)
T 2c35_B 148 VGTR 151 (172)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9863
No 24
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.38 E-value=1.6e-06 Score=65.05 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=53.7
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEecccccccccc--c-------cccccCCCCCCEEEEEEE
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEID--K-------VDMHLSFRPGDIVRASVV 142 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d--~-------~~~~~~~~~GDiV~A~Vi 142 (146)
.-|.+|+++.|+|+++++..++|++ .++.|++|++++...+.. . .+..+.|+.||.|++||+
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l---------~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~ 147 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNL---------GPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVI 147 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEC---------SSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEE
T ss_pred eeccCCCEEEEEEeeeccceEEEEE---------CCccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEE
Confidence 4499999999999999999999997 468999999999754321 0 145678999999999999
Q ss_pred Eee
Q 032149 143 SFM 145 (146)
Q Consensus 143 s~~ 145 (146)
++.
T Consensus 148 ~v~ 150 (180)
T 4ayb_E 148 SVA 150 (180)
T ss_dssp EEC
T ss_pred EEe
Confidence 863
No 25
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.22 E-value=5.3e-06 Score=61.80 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccc-ccccc-------ccCCCCCCEEEEEEEEe
Q 032149 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI-DKVDM-------HLSFRPGDIVRASVVSF 144 (146)
Q Consensus 73 ~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~-d~~~~-------~~~~~~GDiV~A~Vis~ 144 (146)
-|.+|+++.|+|+++++..++|++ .. ..|++|+|++...+. +..+. ++.|+.||.|++||+++
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l--------~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 150 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQV--------GP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 150 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEE--------TT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEecCEEEEEe--------cC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEE
Confidence 388999999999999999999999 44 899999999853321 11111 26799999999999986
Q ss_pred e
Q 032149 145 M 145 (146)
Q Consensus 145 ~ 145 (146)
.
T Consensus 151 d 151 (171)
T 1y14_B 151 I 151 (171)
T ss_dssp E
T ss_pred E
Confidence 3
No 26
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.12 E-value=5.6e-06 Score=77.76 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEecccccccc-ccccccccCCCCCCEEEEEEEEee
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATE-IDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~-~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
--+++|++|.|+|++|++..++|+| .....|++|+|++.... .. +..+.|++||.|.|+|+++.
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L--------~~gveGLVHiSelsd~~~v~--~p~~v~kvGd~V~vkVl~VD 962 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTT--------NSEVECVVNAQRHAGAQLRR--PANEIYEIGKTYPAKVIYID 962 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEEC--------TTSCEEEECTTSSSSTTSCS--CSTTTSCTTCEEEEEEEEEE
T ss_pred hhCCCCCEEEEEEEEEecceEEEEe--------CCCceEEEEHHHcCCCcccC--CHHHcCCCCCEEEEEEEEEE
Confidence 4478999999999999999999998 56689999999998665 44 77899999999999999874
No 27
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.10 E-value=4e-07 Score=81.58 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
..|++|+++.|+|+++.+..|||+| .....|++|+|++...+.. ++.+.|++||.|++||+++.
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel--------~~g~eGLvHiSels~~rv~--~~~d~~kvGD~V~VkVi~iD 696 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNF--------FGAKDGLVHVSQISNERVA--KPSDVLKEGQMVKVKLLGFD 696 (726)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEE--------CCCcEEEEEHHHcCccccc--CccccCCCCCEEEEEEEEEC
Confidence 3489999999999999999999999 4568999999999876666 88999999999999999863
No 28
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.09 E-value=2.2e-06 Score=64.13 Aligned_cols=65 Identities=23% Similarity=0.076 Sum_probs=52.4
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEecccccccccc-c-------cccccCCCCCCEEEEEEEE
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEID-K-------VDMHLSFRPGDIVRASVVS 143 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d-~-------~~~~~~~~~GDiV~A~Vis 143 (146)
..|.+|+++.|+|+++++..++|++ .+++|++|++++...+.. . .+..+.|++||.|++||++
T Consensus 80 f~p~~Gev~~G~V~~v~~fG~FV~l---------~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~ 150 (172)
T 3h0g_G 80 WRPFRGEVVDAIVTTVNKMGFFANI---------GPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVG 150 (172)
T ss_dssp ECCCTTCEEECCCCEEETTEEECCB---------TTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEE
T ss_pred eccCCCCEEEEEEEEEEcceEEEEe---------CCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEE
Confidence 4489999999999999999999998 468899999998533211 0 1234689999999999998
Q ss_pred ee
Q 032149 144 FM 145 (146)
Q Consensus 144 ~~ 145 (146)
+.
T Consensus 151 vd 152 (172)
T 3h0g_G 151 TR 152 (172)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 29
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.04 E-value=1.1e-05 Score=62.63 Aligned_cols=65 Identities=9% Similarity=0.024 Sum_probs=51.4
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccc-ccccc-------ccCCCCCCEEEEEEEE
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI-DKVDM-------HLSFRPGDIVRASVVS 143 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~-d~~~~-------~~~~~~GDiV~A~Vis 143 (146)
.-|++|+++.|+|+++++..++|+| .. ..|++|++++...+. |.... ++.|++||.|+.||++
T Consensus 79 ~~p~vGev~~G~V~~vt~fG~FVel--------g~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~ 149 (215)
T 2b8k_G 79 FKPFKGEVVDGTVVSCSQHGFEVQV--------GP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (215)
T ss_dssp ECCCTTEEEEEEEEEEETTEEEEEC--------TT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEE
T ss_pred eccCCCCEEEEEEEEEecceEEEEe--------cC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEE
Confidence 3489999999999999999999998 33 899999999864322 11111 2679999999999998
Q ss_pred ee
Q 032149 144 FM 145 (146)
Q Consensus 144 ~~ 145 (146)
+.
T Consensus 150 vd 151 (215)
T 2b8k_G 150 CI 151 (215)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 30
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.01 E-value=1.5e-05 Score=64.09 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=48.3
Q ss_pred CCCCCEEEEEEEEEecceEEE-EEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 74 PEPGSVVIARVTKVMTRMASA-DIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 74 P~~GdiViG~V~~v~~~~~~v-~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
.++||+|.|+|.++++..|+| .+ ...+.|++|.||+. +.|++||.|.|+|+++.
T Consensus 150 ~~~G~~V~g~V~~i~~~G~fV~~i--------~~g~~Glih~SEl~----------~~l~~Gd~v~~~V~~id 204 (285)
T 3go5_A 150 NMQNQNWPAIVYRLKLSGTFVYLP--------ENNMLGFIHPSERY----------AEPRLGQVLDARVIGFR 204 (285)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEET--------TTTEEEEECGGGCS----------SCCCTTCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEeCCcEEEEEe--------CCCeEEEEEHHHcc----------ccCCCCCEEEEEEEEEE
Confidence 478999999999999999999 87 67799999998864 56899999999999874
No 31
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.90 E-value=4.8e-06 Score=75.20 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=55.5
Q ss_pred CCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 74 P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
+++|+++.|+|++|++..++|+| .....|++|+|++...+.. +..+.|++||.|.++|+++.
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l--------~~~~eGLVhiS~Lsd~~v~--d~~~~~~vGd~V~VkVi~VD 713 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDI--------GVHQDGLVHISALSEKFVK--DPYEVVKAGDIVKVKVMEVD 713 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEEC--------SSSSEEEEETTTSCSSCCS--CHHHHCCTTCCCCCBEEEEE
T ss_pred cCCCCEEEEEEEEEecCCeEEEe--------CCCcEEEEEHHHcCccccC--ChhheeCCCCEEEEEEEEEE
Confidence 68999999999999999999998 4567899999999876555 78899999999999999874
No 32
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.83 E-value=2.4e-06 Score=76.55 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
.-+++|+++.|+|+++.+..+||+| .....|++|+|++...+.. +..+.|++||.|++||+++.
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel--------~~g~eGLvHiSel~~~~v~--~~~~~~~vGd~V~VkVi~vd 686 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAI--------GGGKEGLVHISQIADKRVE--KVTDYLQMGQEVPVKVLEVD 686 (723)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEe--------CCCceEEEEHHHcCCcccc--CcccccCCCCEEEEEEEEEC
Confidence 3489999999999999999999999 4568999999999766665 78899999999999999863
No 33
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.81 E-value=9.7e-05 Score=60.97 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=50.0
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 71 ~~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
.|..+.|++|.|+|.++..+.++|++ . ...|+||.++.. ..+.|++||.|+|.|.++.
T Consensus 129 e~~~~~GeIV~G~V~ri~~~~v~VDl--------G-k~EgiLp~sE~i--------p~E~~~vGD~Vkv~V~~V~ 186 (344)
T 1hh2_P 129 KYSELKGTVTTAEVIRVMGEWADIRI--------G-KLETRLPKKEWI--------PGEEIKAGDLVKVYIIDVV 186 (344)
T ss_dssp CTTCCTTCEEEEEEEEECSSEEEEEE--------T-TEEEEEEGGGSC--------TTCCCCTTCEEEEEEEEEE
T ss_pred HHhhcCCCEEEEEEEEEecCcEEEEe--------C-CeEEEEeHHHcC--------CCcCCCCCCEEEEEEEEEE
Confidence 34567999999999999999999999 4 689999998874 3578999999999999763
No 34
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.78 E-value=7.6e-05 Score=57.11 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=51.7
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccc--cc---------------cccccCCCCC
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI--DK---------------VDMHLSFRPG 134 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~--d~---------------~~~~~~~~~G 134 (146)
.-|.+|+++.|+|+++++..++|++ .++.|++|+++....+- |. .+-...|+.|
T Consensus 77 f~p~~GEv~~G~Vs~vt~~GifV~l---------g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~G 147 (203)
T 3ayh_B 77 FRPFRGEVMLGKIKSCSEEGIRVTI---------SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDID 147 (203)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEC---------SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTT
T ss_pred EccCCCCEEEEEEEEEeccEEEEEE---------eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCC
Confidence 3489999999999999999999998 36889999998854331 00 1335679999
Q ss_pred CEEEEEEEEee
Q 032149 135 DIVRASVVSFM 145 (146)
Q Consensus 135 DiV~A~Vis~~ 145 (146)
|.|+.||.++.
T Consensus 148 d~VrvrV~~v~ 158 (203)
T 3ayh_B 148 EEIRFQIESED 158 (203)
T ss_dssp CEEEEEEEEEE
T ss_pred CEEEEEEEEEE
Confidence 99999999863
No 35
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.78 E-value=3.3e-06 Score=78.17 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEecccccccc-ccccccccCCCCCCEEEEEEEEee
Q 032149 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATE-IDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 73 ~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~-~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
-+++|++|.|+|++|++..++|+| .....|++|+|++.... .. +..+.|++||.|.|+|+++.
T Consensus 902 ~l~~G~iv~G~V~~V~~fGaFV~L--------~~gveGLVHiSelsd~~~v~--~~~~v~kvGd~V~vkVl~VD 965 (1030)
T 3psf_A 902 TFFKGSIIPVRVERFWHNDIICTT--------NSEVECVVNAQRHAGAQLRR--PANEIYEIGKTYPAKVIYID 965 (1030)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HhcCCCEEEEEEEEEccCeEEEEe--------CCCcEEEEEHHHcCCCcccC--CHHHcCCCCCEEEEEEEEEE
Confidence 468999999999999999999998 55679999999998654 44 77899999999999999864
No 36
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00011 Score=57.01 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=52.1
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccc--c---c-------cccccCCCCCCEEEE
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI--D---K-------VDMHLSFRPGDIVRA 139 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~--d---~-------~~~~~~~~~GDiV~A 139 (146)
..|.+|+++.|+|++++...++|++ ..++.|++|+++....+- | . ..-...|+.||.|+.
T Consensus 77 f~p~vGEv~~G~Is~Vt~fGifVeL--------~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~Vrv 148 (218)
T 2ckz_B 77 FKPFLGEIVTGWISKCTAEGIKVSL--------LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRF 148 (218)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEC--------TTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEE
T ss_pred ecCCCCCEEEEEEEEEccCcEEEEc--------cCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEE
Confidence 4489999999999999999999998 567899999998854331 0 0 123566999999999
Q ss_pred EEEEee
Q 032149 140 SVVSFM 145 (146)
Q Consensus 140 ~Vis~~ 145 (146)
||.++.
T Consensus 149 rV~~v~ 154 (218)
T 2ckz_B 149 RIEREV 154 (218)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999863
No 37
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.65 E-value=0.00012 Score=57.96 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=48.8
Q ss_pred CCCCCCCEEEEEEEE----EecceEEEEEEeeccccccc---ceeeEEeccccccccccccccccCCCCCCEEEEEEEEe
Q 032149 72 PVPEPGSVVIARVTK----VMTRMASADIMCVGAKSVRE---KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSF 144 (146)
Q Consensus 72 ~~P~~GdiViG~V~~----v~~~~~~v~I~~v~~~~l~~---~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~ 144 (146)
|..+.|++|.|+|.+ +..+.++|+| .. ...|+|+.++.. ..+.|++||-|+|.|.++
T Consensus 3 ~~~r~GeIVtG~V~r~~~~v~~~~ViVdl--------G~~~~k~EgiLP~~Eqi--------p~E~~~~GDrIkayV~~V 66 (251)
T 2asb_A 3 FSTREGEIVAGVIQRDSRANARGLVVVRI--------GTETKASEGVIPAAEQV--------PGESYEHGNRLRCYVVGV 66 (251)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEE--------CSSSSCEEEEECGGGSC--------TTCCCCTTCEEEEEEEEE
T ss_pred hhhcCCCEEEEEEEEccccccCCeEEEEe--------CCCCcceEEEEcHHHcC--------CCccCCCCCEEEEEEEEE
Confidence 567899999999999 8999999999 33 489999987753 367899999999999976
Q ss_pred e
Q 032149 145 M 145 (146)
Q Consensus 145 ~ 145 (146)
-
T Consensus 67 ~ 67 (251)
T 2asb_A 67 T 67 (251)
T ss_dssp E
T ss_pred E
Confidence 3
No 38
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.63 E-value=3e-06 Score=76.33 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEecccc----ccccccccccccCCCCCCEEEEEEEEee
Q 032149 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDV----RATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi----~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
..|++|+++.|+|+++.+..+||++ .....|++|+|++ ...+.. +..+.|++||.|+++|+++.
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l--------~~g~eGLvHiSel~~~~s~~rv~--~~~~~~~vGd~V~VkVi~vd 730 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSL--------LPGKDGLLHISQIRKLAGGKRVE--NVEDVLGVGQKVQVEIAEID 730 (757)
T ss_dssp ----------CBEEECC-CSCEECC--------C---CCCCC---------------------CCSSCBCCCCCCCCC
T ss_pred hhcccccEEEEEEEEccccEEEEEE--------cCCcEEEEEhHHhccccCCCccc--CcccccCCCCEEEEEEEEEC
Confidence 3579999999999999999999998 4568999999999 555555 78899999999999998764
No 39
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.53 E-value=0.00019 Score=59.62 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=49.3
Q ss_pred CCCCCCCCEEEEEEEE----EecceEEEEEEeeccccccc---ceeeEEeccccccccccccccccCCCCCCEEEEEEEE
Q 032149 71 GPVPEPGSVVIARVTK----VMTRMASADIMCVGAKSVRE---KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVS 143 (146)
Q Consensus 71 ~~~P~~GdiViG~V~~----v~~~~~~v~I~~v~~~~l~~---~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis 143 (146)
.|..++|++|.|+|.+ +....++|+| .. ...|+|+.++..+ .+.|++||-|+|.|.+
T Consensus 125 ef~~r~GeIVtG~V~r~~~~v~~~~v~VdL--------G~~~~k~EgiLP~~EqiP--------~E~~~~GDrVkvyV~~ 188 (366)
T 1k0r_A 125 EFSTREGEIVAGVIQRDSRANARGLVVVRI--------GTETKASEGVIPAAEQVP--------GESYEHGNRLRCYVVG 188 (366)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEE--------CCSSSCEEEEECGGGSCT--------TCCCCTTCEEEEEEEE
T ss_pred HHHhcCCCEEEEEEEEccccccCCeEEEEe--------CCCccceEEEEcHHHcCC--------CccCCCCCEEEEEEEE
Confidence 3557899999999999 9999999999 33 4899999887643 5799999999999998
Q ss_pred ee
Q 032149 144 FM 145 (146)
Q Consensus 144 ~~ 145 (146)
+.
T Consensus 189 V~ 190 (366)
T 1k0r_A 189 VT 190 (366)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 40
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.42 E-value=0.00051 Score=59.46 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCCCCEEEEEEEEEecc--eEEEEEEeecccccccceeeEEecccccccccc-------ccccccCCCCCCEEEEEEEEe
Q 032149 74 PEPGSVVIARVTKVMTR--MASADIMCVGAKSVREKFSGIIRQQDVRATEID-------KVDMHLSFRPGDIVRASVVSF 144 (146)
Q Consensus 74 P~~GdiViG~V~~v~~~--~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d-------~~~~~~~~~~GDiV~A~Vis~ 144 (146)
+.+|++..|+|+++.+. .|||+| ...-.|+||.+|+...+.. ..++.+.+++||.|..+|++.
T Consensus 43 ~~vGnIY~GkV~rv~p~~~aAFVdi--------G~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke 114 (517)
T 2bx2_L 43 QKKANIYKGKITRIEPSLEAAFVDY--------GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKE 114 (517)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEES--------SSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEEC
T ss_pred CCCCCEEEEEEEEeccCCceEEEEe--------CCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEee
Confidence 67899999999999998 899999 6677899999998543311 225778999999999999873
No 41
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=96.15 E-value=0.0048 Score=42.00 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccc
Q 032149 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRAT 120 (146)
Q Consensus 73 ~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~ 120 (146)
.|++|+.|.+.|+++.+..++|+| ....+|++|+|++...
T Consensus 58 ~l~~Ge~V~g~V~~i~~fG~fv~l--------~~~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 58 NPQQGDRVEGKIKSITDFGIFIGL--------DGGIDGLVHLSDISWA 97 (101)
T ss_dssp CCCTTCEEEEEEEECCSEEEEECT--------TSCEEEEEEEEEEEEC
T ss_pred CCCCCCEEEEEEEEeCCcEEEEEc--------CCCceEEEEHHHCccC
Confidence 689999999999999999999998 5568999999998643
No 42
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=95.89 E-value=0.027 Score=45.10 Aligned_cols=35 Identities=6% Similarity=0.041 Sum_probs=30.3
Q ss_pred CCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccc
Q 032149 75 EPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVR 118 (146)
Q Consensus 75 ~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~ 118 (146)
.+|+++.|+|+++++..++|++ . ...|+||.+++.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~--------~-g~egllp~se~~ 39 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK--------D-GQTYALAKEEGQ 39 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE--------T-TEEEEEEGGGCC
T ss_pred cCCCEEEEEEEEEECCEEEEEc--------C-CeEEEEEHHHCc
Confidence 5799999999999999999998 3 567888888773
No 43
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=95.72 E-value=0.059 Score=36.52 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=44.6
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccc---cccc-cccCCCCCCEEEEE
Q 032149 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI---DKVD-MHLSFRPGDIVRAS 140 (146)
Q Consensus 73 ~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~---d~~~-~~~~~~~GDiV~A~ 140 (146)
.|..|+...|.|+++.++.+.+.+ .....+.|..++++--.. .... ..+.|++||+|+.+
T Consensus 30 ~~~~~~~~~AvV~~v~~~~~~v~~--------~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 30 IGNSDDILAAVVLSATPGAVEAFR--------KNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp SCTTTTCEEEEEEEEETTEEEEEE--------TTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCccCCeEEEEEEEeCCCeEEEEE--------cCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 477799999999999999988876 444556677777652211 1124 67889999999987
No 44
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=95.25 E-value=0.043 Score=48.42 Aligned_cols=65 Identities=8% Similarity=0.109 Sum_probs=50.1
Q ss_pred CCCCC--EEEEEEEEEecceEEEEEEeecccccccceeeEEecccccc---cc-cc--cc----ccccCCCCCCEEEEEE
Q 032149 74 PEPGS--VVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRA---TE-ID--KV----DMHLSFRPGDIVRASV 141 (146)
Q Consensus 74 P~~Gd--iViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~---~~-~d--~~----~~~~~~~~GDiV~A~V 141 (146)
.++|+ ...|+|+++++..++|.|. .....|++|.+++.. .+ .+ .. +....|++||.|+.+|
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L~-------~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV 628 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRLV-------DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTI 628 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEET-------TTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEE
T ss_pred hccCCCceEEEEEEEEeCCceEEEEc-------CCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEE
Confidence 57898 9999999999999999981 245899999998852 11 11 11 2356799999999999
Q ss_pred EEee
Q 032149 142 VSFM 145 (146)
Q Consensus 142 is~~ 145 (146)
.++.
T Consensus 629 ~~vd 632 (644)
T 2id0_A 629 AEVR 632 (644)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9874
No 45
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=93.65 E-value=0.1 Score=34.49 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=46.0
Q ss_pred ccccCCcEEecCCccCC--CCCeeeCCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEecC
Q 032149 3 VKEEEMVLVTPGEVLGK--ATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67 (146)
Q Consensus 3 ~~~~~~~iV~PGd~l~~--~~~~~~G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p~ 67 (146)
+|.-..+.|.||..|.. -..|-||.++-.-. |..|||..-|.+..... ...++.|+|.|.
T Consensus 23 vK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~Gk-D~TLfAl~~G~V~f~~~----~~~r~~VsV~p~ 84 (85)
T 3v2d_0 23 VKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGR-DFTLFALVDGVVEFQDR----GRLGRYVHVRPL 84 (85)
T ss_dssp ESSCTTCEECTTCEEEECSSCSEEECTTEEECT-TCCEEESSSEEEEEEEC----GGGCEEEEEEEC
T ss_pred eEecCCeEEcCCeEEEecCCccCcCCCCEeEcC-CCeEEEecCEEEEEEEc----CCCCEEEEEEEC
Confidence 45566889999998864 34699999998854 99999999999988531 123567888874
No 46
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=92.48 E-value=0.14 Score=33.26 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=45.2
Q ss_pred ccccCCcEEecCCccCC--CCCeeeCCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEec
Q 032149 3 VKEEEMVLVTPGEVLGK--ATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66 (146)
Q Consensus 3 ~~~~~~~iV~PGd~l~~--~~~~~~G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p 66 (146)
+|.-..+.|.||..|.. -..|-||.++-.-. |..|||..-|.++.... ....++.|+|.|
T Consensus 14 vK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~Gk-D~TLfAl~~G~V~f~~~---~~~~r~~VsV~p 75 (76)
T 3r8s_W 14 VKRFGGESVLAGSIIVRQRGTKFHAGANVGCGR-DHTLFAKADGKVKFEVK---GPKNRKFISIEA 75 (76)
T ss_dssp ESSCTTCEECTTCEEEECSSCSSEECTTEEECT-TSCEEESSSEEEEEEEE---TTTTEEEEEEEC
T ss_pred EEecCCeEEecCcEEEeccCccCcCCCCeeecC-CCeEEEccCEEEEEEEe---CCCCCEEEEEEe
Confidence 45667889999998864 34699999998854 99999999999988520 012346788876
No 47
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=91.57 E-value=0.17 Score=33.91 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=45.9
Q ss_pred ccccCCcEEecCCccCC--CCCeeeCCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEecC
Q 032149 3 VKEEEMVLVTPGEVLGK--ATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67 (146)
Q Consensus 3 ~~~~~~~iV~PGd~l~~--~~~~~~G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p~ 67 (146)
+|.-..+.|.||..|.. -..|-||.++-.-. |..|||...|.+++... ..+++.|+|.|.
T Consensus 23 vK~~gGq~V~aG~IivRQRGtk~hPG~NVg~Gk-D~TLfAl~~G~V~f~~~----~~~r~~V~V~p~ 84 (91)
T 2zjr_T 23 VKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGR-DHTLFALSDGKVVFINK----GKGARFISIEAA 84 (91)
T ss_dssp CSSCTTCEECSSCEEECCSSSSSEECTTEECCT-TSCEEESSCEEEEEEEE----TTTEEEEEECCC
T ss_pred EEecCCeEEcCCeEEEecCCCEEcCCCCEEEcC-CCcEEeccceEEEEEEc----CCCcEEEEEEeC
Confidence 45566889999998864 24699999998753 89999999999988520 133568999874
No 48
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=91.29 E-value=0.31 Score=43.72 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=44.4
Q ss_pred CEEEEEEEEEecceEEEEEEeeccccccc-ceeeEEeccccc--c-cc-cc--cc-----c----cccCCCCCCEEEEEE
Q 032149 78 SVVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRQQDVR--A-TE-ID--KV-----D----MHLSFRPGDIVRASV 141 (146)
Q Consensus 78 diViG~V~~v~~~~~~v~I~~v~~~~l~~-~~~g~l~~sdi~--~-~~-~d--~~-----~----~~~~~~~GDiV~A~V 141 (146)
....|.|++++...++|.| .. ...|++|.+++. . .+ -+ .. + ....|++||.|+++|
T Consensus 671 ~~~~g~V~~V~~~G~fV~l--------~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV 742 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLV--------PKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQV 742 (760)
T ss_dssp SEEEEEEEEEETTEEEEEE--------TTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEE
T ss_pred eEEEEEEEEEECCeEEEEE--------eCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEE
Confidence 6899999999999999999 43 689999999884 1 11 01 00 1 247899999999999
Q ss_pred EEee
Q 032149 142 VSFM 145 (146)
Q Consensus 142 is~~ 145 (146)
.++.
T Consensus 743 ~~vd 746 (760)
T 2vnu_D 743 RSVM 746 (760)
T ss_dssp C---
T ss_pred EEEE
Confidence 8763
No 49
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=90.05 E-value=0.47 Score=43.88 Aligned_cols=60 Identities=20% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCEEEEEEEEEecceEEEEEEeeccccccc-ceeeEEeccccc--ccc--cc--ccc---------cccCCCCCCEEEEE
Q 032149 77 GSVVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRQQDVR--ATE--ID--KVD---------MHLSFRPGDIVRAS 140 (146)
Q Consensus 77 GdiViG~V~~v~~~~~~v~I~~v~~~~l~~-~~~g~l~~sdi~--~~~--~d--~~~---------~~~~~~~GDiV~A~ 140 (146)
|...-|.|++++...++|.| .. ...|++|.+++. ..+ -| ... ....|+.||.|+.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L--------~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~Vk 958 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLV--------PKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQ 958 (977)
T ss_dssp TCEEEEEEEEECSSEEEEEC--------TTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEE
T ss_pred ceEEEEEEEEEcCCeEEEEE--------cCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEE
Confidence 88999999999999999998 43 689999999985 111 01 011 24789999999999
Q ss_pred EEEe
Q 032149 141 VVSF 144 (146)
Q Consensus 141 Vis~ 144 (146)
|.++
T Consensus 959 V~~v 962 (977)
T 2wp8_J 959 VRSV 962 (977)
T ss_dssp ECCC
T ss_pred EEEE
Confidence 9865
No 50
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=89.71 E-value=1.1 Score=34.04 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=44.0
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccc---c------ccccc-cCCCCCCEEEEEEE
Q 032149 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEI---D------KVDMH-LSFRPGDIVRASVV 142 (146)
Q Consensus 73 ~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~---d------~~~~~-~~~~~GDiV~A~Vi 142 (146)
-|.+|+++.|+|+.++.....+-+ ...|+..|+...++..-. + ..+.. +--++|+.|+-||.
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~--------~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~ 197 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLI--------HDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVR 197 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEE--------TTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEE
T ss_pred ecCCCCEEEEEEEEECCCcEEEEE--------eCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEE
Confidence 399999999999999998887765 356777777776642110 0 00110 11136999999999
Q ss_pred Eee
Q 032149 143 SFM 145 (146)
Q Consensus 143 s~~ 145 (146)
++.
T Consensus 198 ~~~ 200 (214)
T 2rf4_A 198 NVH 200 (214)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 51
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=87.67 E-value=2.4 Score=30.06 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=24.2
Q ss_pred CCCCCEE---------EEEEEEEecceEEEEEEeec
Q 032149 74 PEPGSVV---------IARVTKVMTRMASADIMCVG 100 (146)
Q Consensus 74 P~~GdiV---------iG~V~~v~~~~~~v~I~~v~ 100 (146)
.++||+| +|.|+..+++.+.|.|++|-
T Consensus 8 ~~~g~~v~~~yKTG~YigeI~e~~~~~~lVkVlaVl 43 (130)
T 1y71_A 8 FEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLAVL 43 (130)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccceeEEEEecceeEEEEEeecCCeEEEEEEEEe
Confidence 4788988 89999999999999999884
No 52
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=86.74 E-value=0.66 Score=29.48 Aligned_cols=44 Identities=27% Similarity=0.371 Sum_probs=35.4
Q ss_pred ccccCCcEEecCCccCC--CCCeeeCCcEEEEcCCCeEEEEEeeeEE
Q 032149 3 VKEEEMVLVTPGEVLGK--ATEVKAGKGAYVAKHNGLVYASLTGLLR 47 (146)
Q Consensus 3 ~~~~~~~iV~PGd~l~~--~~~~~~G~Gty~~~~~g~i~As~~G~~~ 47 (146)
+|.-..+.|.||..|.. -..|-||.++-.-. |..|||...|.++
T Consensus 23 vK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~Gk-D~TLfAl~~G~V~ 68 (69)
T 2ftc_O 23 IKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGK-NKCLYALEEGIVR 68 (69)
T ss_pred EEecCCeEecCCeEEEecCCCeEcCCCCeeecC-CCcEEEccceEEe
Confidence 45556789999998864 24699999998753 8999999999886
No 53
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=75.18 E-value=6.8 Score=28.55 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=38.0
Q ss_pred EEEEEEEEecceEEEEEEeecc--cc-----c-ccc-eeeEEecccc--ccccccccccccCCCCCCEEE
Q 032149 80 VIARVTKVMTRMASADIMCVGA--KS-----V-REK-FSGIIRQQDV--RATEIDKVDMHLSFRPGDIVR 138 (146)
Q Consensus 80 ViG~V~~v~~~~~~v~I~~v~~--~~-----l-~~~-~~g~l~~sdi--~~~~~d~~~~~~~~~~GDiV~ 138 (146)
++|+|+++.++.+.|.++.-.+ .. . .+. ..|++.-.+- ..-....+.....+++||.|.
T Consensus 47 lVG~V~~V~~~~S~V~Litd~~~~s~v~v~v~~~~~~~~Gil~G~~~~~~~l~l~~i~~~~~i~~GD~vv 116 (172)
T 2qf4_A 47 LIGSVSKVEENSTIVNLLTNTENADKISVKIQHGSTTIYGIIIGYDKENDVLKISQLNSNSDISAGDKVT 116 (172)
T ss_dssp EEEEEEEECSSCEEEEETTCSBCCSCCEEEEEETTEEEEEEEEEEETTTTEEEEECCSCCCCCCTTCEEE
T ss_pred cEEEEEEECCCeEEEEEEECCCCCEEEEEEEEcCCCCEEEEEEccCCCCCeEEEEECCCCCCCCCCCEEE
Confidence 8899999999999999876544 21 2 234 5677765432 111222334456789999875
No 54
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=66.30 E-value=0.32 Score=36.71 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=44.1
Q ss_pred ccccCCcEEecCCccCC--CCCeeeCCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEecC
Q 032149 3 VKEEEMVLVTPGEVLGK--ATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67 (146)
Q Consensus 3 ~~~~~~~iV~PGd~l~~--~~~~~~G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p~ 67 (146)
+|.-.++.|.||..|.. ...|-||.++-.-. |..|||..-|.++.... ..+++.|+|.|.
T Consensus 80 VK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~Gk-DhTLFAl~~G~VkF~~~----~~~Rk~VsV~p~ 141 (198)
T 3bbo_X 80 VKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGK-DHTIFSLIDGLVKFEKF----GPDRKKISVYPR 141 (198)
T ss_dssp CSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCC-CCCSBCCSCCCCCSSSS----CCCCSCCCSSCC
T ss_pred EEecCCeEeccCcEEEeccCceEcCCCCeeecC-CCceEeccceEEEEEEc----CCCcEEEEEEeC
Confidence 45556788999998864 24689999887642 89999999999988521 133567888774
No 55
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=62.41 E-value=16 Score=28.16 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=38.0
Q ss_pred EEEEEEEEEecceEEEEEEeeccc----c---cccc-eeeEEecccc--ccccccccccccCCCCCCEEE
Q 032149 79 VVIARVTKVMTRMASADIMCVGAK----S---VREK-FSGIIRQQDV--RATEIDKVDMHLSFRPGDIVR 138 (146)
Q Consensus 79 iViG~V~~v~~~~~~v~I~~v~~~----~---l~~~-~~g~l~~sdi--~~~~~d~~~~~~~~~~GDiV~ 138 (146)
=++|+|+++.++.+.|..+.-.+. + ..+. ..|++.-.+- ..-....+.....+++||.|.
T Consensus 108 GlVG~V~~V~~~~S~V~litd~~~~s~v~v~v~~s~~~~Gil~G~~~~~~~l~l~~i~~~~~i~~GD~Vv 177 (255)
T 2j5u_A 108 GLIGKVTTTGAKSATVELLTSSDVKNRVSAKVQGKENAFGIINGYDSDTKLLELKQLPYDMKFKKGQKVV 177 (255)
T ss_dssp EEEEEEEEECSSCEEEEETTCCCTTCCEEEEECSSSCEEEEEEEEETTTTEEEEEEEETTSCCCTTCEEE
T ss_pred ccEEEEEEECCCeEEEEEEECCCCCeeEEEEEecCCcEEEEEEccCCCCCcEEEEECCCCCCCCCCCEEE
Confidence 388999999999999988654441 1 1233 6677765432 111223334456789999875
No 56
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=61.25 E-value=9.6 Score=27.98 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=21.1
Q ss_pred CCCCCCCCEEEEEEEEEecceEEEEEEeec
Q 032149 71 GPVPEPGSVVIARVTKVMTRMASADIMCVG 100 (146)
Q Consensus 71 ~~~P~~GdiViG~V~~v~~~~~~v~I~~v~ 100 (146)
+...++||+|.|+|..+..+. .+.+.|++
T Consensus 49 r~~l~~GDlV~ArV~~~~~~~-~~~Ltc~~ 77 (175)
T 2ja9_A 49 RPTLQVGDLVYARVCTAEKEL-EAEIECFD 77 (175)
T ss_dssp CCCCCTTCEEEEEEEECCTTS-CCEEESSC
T ss_pred hccCCCCCEEEEEEEEecCCC-ceEEEecc
Confidence 445699999999999998753 34555544
No 57
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=53.24 E-value=54 Score=22.81 Aligned_cols=63 Identities=24% Similarity=0.229 Sum_probs=43.9
Q ss_pred CeEEEecCCCCCCCCCCCCEEEEEEEEEecceEEEEEEeecccccccce--eeEEeccccccccccccccccCCCCCCEE
Q 032149 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKF--SGIIRQQDVRATEIDKVDMHLSFRPGDIV 137 (146)
Q Consensus 60 ~~i~V~p~~~~~~~P~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~--~g~l~~sdi~~~~~d~~~~~~~~~~GDiV 137 (146)
-.|+|.. +.|+-=-|.|+++..+.+.|.- ...+ .-.++.+++|..... .....|..||.|
T Consensus 6 ~~VEV~~--------~~G~~y~a~V~~v~~d~~~V~f--------~n~w~~~~~vp~~~vRlpP~~--~~~~~f~~gd~V 67 (128)
T 3h8z_A 6 LPVEVRG--------SNGAFYKGFVKDVHEDSVTIFF--------ENNWQSERQIPFGDVRLPPPA--DYNKEITEGDEV 67 (128)
T ss_dssp CEEEEEC--------TTSCEEEEEEEEECSSEEEEEE--------TTCTTCCEEEEGGGEECCCCC------CCCTTCEE
T ss_pred cEEEEec--------CCCCEEEEEEEEEeCCcEEEEE--------ccccCcceEechhhEEcCCCc--ccccCCCCCCEE
Confidence 3677774 3388888999999999999887 2223 357788888865544 334678999999
Q ss_pred EEE
Q 032149 138 RAS 140 (146)
Q Consensus 138 ~A~ 140 (146)
.+-
T Consensus 68 EV~ 70 (128)
T 3h8z_A 68 EVY 70 (128)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 58
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=51.74 E-value=20 Score=21.63 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.2
Q ss_pred CCCCEEEEEEEEEecceEEEEE
Q 032149 75 EPGSVVIARVTKVMTRMASADI 96 (146)
Q Consensus 75 ~~GdiViG~V~~v~~~~~~v~I 96 (146)
-+||.|.++|++.+.++|+-++
T Consensus 45 lPGE~V~v~i~k~kk~~~~a~~ 66 (68)
T 1yez_A 45 KVGDEVRIKVERVLPKFAFASV 66 (68)
T ss_dssp CTTCEEEEEEEEECSSCEEEEE
T ss_pred CCCCEEEEEEEEecCCEEEEEE
Confidence 4599999999999999987765
No 59
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=49.55 E-value=23 Score=21.63 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.1
Q ss_pred CCCCEEEEEEEEEecceEEEEE
Q 032149 75 EPGSVVIARVTKVMTRMASADI 96 (146)
Q Consensus 75 ~~GdiViG~V~~v~~~~~~v~I 96 (146)
-+||.|.++|++.+.++|+-++
T Consensus 47 lPGE~V~v~i~k~kk~~~~a~~ 68 (70)
T 1yvc_A 47 EKGSVINVKVTAVKEKFAFAER 68 (70)
T ss_dssp CTTCEEEEEEEEECSSCEEEEE
T ss_pred CCCCEEEEEEEEeeCCeEEEEE
Confidence 4599999999999999887665
No 60
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=48.12 E-value=46 Score=21.01 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=12.6
Q ss_pred EEEEEEEecceEEEEE
Q 032149 81 IARVTKVMTRMASADI 96 (146)
Q Consensus 81 iG~V~~v~~~~~~v~I 96 (146)
=|+|+.+.++.+.|+.
T Consensus 6 P~kVvei~~~~A~vd~ 21 (75)
T 2z1c_A 6 PGKVIEVNGPVAVVDF 21 (75)
T ss_dssp CEEEEEEETTEEEEEE
T ss_pred cEEEEEECCCEEEEEc
Confidence 3788999777888886
No 61
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.73 E-value=55 Score=22.20 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=31.4
Q ss_pred CCCCCCCCEEEEEEEEEecc-eEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEE
Q 032149 71 GPVPEPGSVVIARVTKVMTR-MASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVV 142 (146)
Q Consensus 71 ~~~P~~GdiViG~V~~v~~~-~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vi 142 (146)
...|..| -++|+|+...++ .+.|.+ ...-.-+-|++ . +...+=.+++||.|.+...
T Consensus 9 ~~~p~eg-e~~g~V~~~lgn~~f~V~l--------~nG~~~la~i~---G----K~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 9 HIVPSNQ-QQIVRVLRTPGNNLHEVET--------AQGQRFLVSMP---S----KYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp SCCCCSS-CEEEEEEECCSSSEEEEEC--------TTSCEEEEECC---T----TCCSCCCCCSSCEEEEEEC
T ss_pred ccCCCCC-eEEEEEEEeCCCCEEEEEe--------CCCCEEEEEec---h----hhcccEEEcCCCEEEEEec
Confidence 3457755 589999998665 455554 22222222221 1 1112555688998887653
No 62
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=37.14 E-value=54 Score=22.26 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=18.5
Q ss_pred CCCCCCCEEEEEEEEEec-ceEEEEE
Q 032149 72 PVPEPGSVVIARVTKVMT-RMASADI 96 (146)
Q Consensus 72 ~~P~~GdiViG~V~~v~~-~~~~v~I 96 (146)
..|..|.. +|+|+...+ .++.|..
T Consensus 27 ~~~~~~e~-~G~Vi~~lgn~~y~V~~ 51 (117)
T 2oqk_A 27 VFKEEGQE-YGQVQRMLGNGRLDAYC 51 (117)
T ss_dssp CCCCTTEE-EEEEEEEEETTEEEEEE
T ss_pred cCCCCCEE-EEEEEEEcCCCEEEEEe
Confidence 46777765 899999988 7777765
No 63
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=36.32 E-value=1.2e+02 Score=23.50 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=11.5
Q ss_pred ccccCCCCCCEEEEE
Q 032149 126 DMHLSFRPGDIVRAS 140 (146)
Q Consensus 126 ~~~~~~~~GDiV~A~ 140 (146)
.|-..++.||+|+.+
T Consensus 63 ~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 63 ALPIIYKNGDIVRFH 77 (294)
T ss_dssp GSCCCCSTTCEEEEE
T ss_pred HCCCCCCCCCEEEEE
Confidence 555566999999866
No 64
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=34.20 E-value=22 Score=24.78 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=29.9
Q ss_pred CeEEEecCCCCCCCCCCCCEEEEEEEEEecc---eEEEEEEeecccc
Q 032149 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTR---MASADIMCVGAKS 103 (146)
Q Consensus 60 ~~i~V~p~~~~~~~P~~GdiViG~V~~v~~~---~~~v~I~~v~~~~ 103 (146)
.-|.|.|..-.++-.+.||+|.|+|..-+.. .+.+.|-+|++.+
T Consensus 77 ~DiyVs~~~irrf~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~~ 123 (130)
T 1a62_A 77 DDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 123 (130)
T ss_dssp TCEEECHHHHHHTTCCTTCEEEEEEECCCTTCCSEEEEEEEEETTBC
T ss_pred CCEEECHHHHhHhCCCCCCEEEEEEeCCCCCCcccceeEEEeECCCC
Confidence 3577777532345679999999999865442 3777777776643
No 65
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=31.78 E-value=39 Score=24.55 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=35.6
Q ss_pred cCCccCCCCCeeeCCcEEEEcCCCeEEEEEeeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEEecceE
Q 032149 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMA 92 (146)
Q Consensus 13 PGd~l~~~~~~~~G~Gty~~~~~g~i~As~~G~~~~~~~~~~~~~~~~~i~V~p~~~~~~~P~~GdiViG~V~~v~~~~~ 92 (146)
+||.+.-.=.-..-.|.|++-.+ +..+-|.+.+++.+ + . .+. +..-..++||.|..+|.++....-
T Consensus 15 ~G~iv~G~V~~i~~fGaFV~L~e---~~gveGLvhiSels---~---~--~v~---~~~~~~~vGd~V~vkVl~vd~~~~ 80 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMGAYVKLLE---YDNIEGMILLSELS---R---R--RIR---SIQKLIRVGKNDVAVVLRVDKEKG 80 (175)
T ss_dssp TTCEEEEEEEEEETTEEEEEETT---TTTCEEEEECC-------------------CCCCCCCTTSEEEEEEEEEETTTT
T ss_pred CCCEEEEEEEEEecceEEEEEcC---CCCcEEEEEHHHcC---C---c--ccC---CHHHcCCCCCEEEEEEEEEECCCC
Confidence 36654321122344677776310 01245777775321 0 0 122 222346999999999999976443
Q ss_pred EEEE
Q 032149 93 SADI 96 (146)
Q Consensus 93 ~v~I 96 (146)
.+++
T Consensus 81 ~I~L 84 (175)
T 2a19_A 81 YIDL 84 (175)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4443
No 66
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=30.97 E-value=46 Score=19.14 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=28.9
Q ss_pred CEEEEEEEEEecceEEEEEEe-ecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEE
Q 032149 78 SVVIARVTKVMTRMASADIMC-VGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVV 142 (146)
Q Consensus 78 diViG~V~~v~~~~~~v~I~~-v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vi 142 (146)
...-|+|+++......+.+.. ..+ ..+.+.+..... + .--+++||-|.|.+-
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~----~~l~a~it~~s~-----~----~l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKG----TELVAAITIDSV-----A----DLDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETT----EEEEEEEEHHHH-----H----HHTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCC----CEEEEEeCHHHH-----H----hCCCCCCCEEEEEEe
Confidence 357899999977654444421 111 123333332111 1 346899999999874
No 67
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=30.27 E-value=1.6e+02 Score=24.53 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=31.9
Q ss_pred CCCCEEEEEEEEEecceEEEEEEeecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEEEee
Q 032149 75 EPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVVSFM 145 (146)
Q Consensus 75 ~~GdiViG~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vis~~ 145 (146)
++|...-|.|+++......|.| ++.... ......|++||.|+.+|.++.
T Consensus 402 ~~g~~f~g~vv~l~~~~glV~v------------------~~l~~d----~~~~~~~~lGd~V~V~v~~vd 450 (469)
T 2r7d_A 402 QPERVWDAVVVDRRGAQATLLI------------------PDLAFD----VQVNTPAAPGTALQVQFADID 450 (469)
T ss_dssp CTTCCEEEEEEEEETTEEEEEE------------------GGGTEE----EEEECCCCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeCcEEEEEE------------------CCCCeE----EecCCcCCCCCEEEEEEEEEc
Confidence 5688888888766544444444 332211 122457999999999999874
No 68
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=29.17 E-value=1.2e+02 Score=20.81 Aligned_cols=60 Identities=13% Similarity=0.261 Sum_probs=36.2
Q ss_pred cEEEEcCCCeEEEEE---eeeEEEcCCCCCCCCCCCeEEEecCCCCCCCCCCCCEE----------EEEEEEEecc--eE
Q 032149 28 GAYVAKHNGLVYASL---TGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVV----------IARVTKVMTR--MA 92 (146)
Q Consensus 28 Gty~~~~~g~i~As~---~G~~~~~~~~~~~~~~~~~i~V~p~~~~~~~P~~GdiV----------iG~V~~v~~~--~~ 92 (146)
|.|.. -|.|..-. .+.+... +....+.|....=...+|++|+.| .|+..++..+ .+
T Consensus 31 g~y~~--KgvV~~V~~~~~c~V~l~-------~~g~~v~v~q~~LETViP~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~ 101 (127)
T 2ckk_A 31 KYHKK--KAIVKEVIDKYTAVVKMI-------DSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSA 101 (127)
T ss_dssp GGTTC--EEEEEEEETTTEEEEEET-------TTCCEEEEEGGGEEECCCCTTCEEEECSSTTTTCEEEEEEEEGGGTEE
T ss_pred cccCc--eEEEEEecCCCeEEEEEC-------CCCCEEEEchHHcEEecCCCCCEEEEEecccCCcEEEEEEEeCCCcEE
Confidence 44444 45555543 4455552 223577777532245789999988 6888888766 56
Q ss_pred EEEE
Q 032149 93 SADI 96 (146)
Q Consensus 93 ~v~I 96 (146)
.|.+
T Consensus 102 ~V~l 105 (127)
T 2ckk_A 102 TIVI 105 (127)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 69
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=28.85 E-value=30 Score=21.65 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=11.9
Q ss_pred ccccCCCCCCEEE
Q 032149 126 DMHLSFRPGDIVR 138 (146)
Q Consensus 126 ~~~~~~~~GDiV~ 138 (146)
.++.+|++||-|+
T Consensus 13 ~LrK~F~~GDHVk 25 (69)
T 2do3_A 13 ELRKYFKMGDHVK 25 (69)
T ss_dssp CCCSSCCTTCEEE
T ss_pred HceeeccCCCeEE
Confidence 7899999999987
No 70
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=28.51 E-value=1.1e+02 Score=19.81 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=13.4
Q ss_pred EEEEEEEEecceEEEEE
Q 032149 80 VIARVTKVMTRMASADI 96 (146)
Q Consensus 80 ViG~V~~v~~~~~~v~I 96 (146)
+=|+|+.+.+..+.|+.
T Consensus 5 IP~kVvei~~~~A~Vd~ 21 (90)
T 2ot2_A 5 VPGQIRTIDGNQAKVDV 21 (90)
T ss_dssp EEEEEEEECSSEEEEEC
T ss_pred cceEEEEEcCCcEEEEc
Confidence 45889999877788875
No 71
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=26.38 E-value=87 Score=23.25 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.8
Q ss_pred CCCCCEEEEEEEEEecc--eEEEEE
Q 032149 74 PEPGSVVIARVTKVMTR--MASADI 96 (146)
Q Consensus 74 P~~GdiViG~V~~v~~~--~~~v~I 96 (146)
.++||+|.++|.++.+. .+.+.+
T Consensus 136 l~~GD~V~akVisi~~~~~~i~LS~ 160 (209)
T 2nn6_I 136 FRPGDIVLAKVISLGDAQSNYLLTT 160 (209)
T ss_dssp CCSSSEEEEEEEEEETTTTEEEEEC
T ss_pred cCCCCEEEEEEEEEeCCCCeEEEEE
Confidence 58999999999999764 466665
No 72
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.68 E-value=44 Score=26.44 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=16.0
Q ss_pred CCCCCCEEEEEEEEEecce
Q 032149 73 VPEPGSVVIARVTKVMTRM 91 (146)
Q Consensus 73 ~P~~GdiViG~V~~v~~~~ 91 (146)
..++||+|+|+|..+..+.
T Consensus 170 ~f~~GDlV~ArV~s~~~~~ 188 (289)
T 2nn6_G 170 NVQVGDLIYGQFVVANKDM 188 (289)
T ss_dssp SSCTTCEEEEEEEECCTTS
T ss_pred hcCCCCEEEEEEEEcCCCC
Confidence 4589999999999997654
No 73
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=24.18 E-value=1.5e+02 Score=19.95 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=10.3
Q ss_pred ccCCCCCCEEEEE
Q 032149 128 HLSFRPGDIVRAS 140 (146)
Q Consensus 128 ~~~~~~GDiV~A~ 140 (146)
.+.|.+||+|+.+
T Consensus 82 ~~~~~~g~yVrV~ 94 (136)
T 4gop_B 82 ASEIRNNVYVRVL 94 (136)
T ss_dssp CCSCCTTCEEEEE
T ss_pred ccccCCCCEEEEE
Confidence 5778999999653
No 74
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=22.80 E-value=1e+02 Score=23.56 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.6
Q ss_pred CCCCCCEEEEEEEEEecce
Q 032149 73 VPEPGSVVIARVTKVMTRM 91 (146)
Q Consensus 73 ~P~~GdiViG~V~~v~~~~ 91 (146)
..++||+|.++|.++..+.
T Consensus 121 ~l~vGD~V~arVi~v~~~~ 139 (251)
T 2je6_I 121 YLDVGDYVIARIENFDRSI 139 (251)
T ss_dssp SCCTTCEEEEEEEEEETTE
T ss_pred cCCCCCEEEEEEEEECCCC
Confidence 4699999999999998754
No 75
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=22.42 E-value=76 Score=19.28 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=13.1
Q ss_pred EEEEEEEEec-ceEEEEE
Q 032149 80 VIARVTKVMT-RMASADI 96 (146)
Q Consensus 80 ViG~V~~v~~-~~~~v~I 96 (146)
..|+|++..+ .++.|..
T Consensus 8 ~~G~Vi~~lg~~~y~V~~ 25 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVEL 25 (71)
T ss_dssp CCEEEEEECSSSEEEEEE
T ss_pred EEEEEEEEeCCcEEEEEE
Confidence 3699999988 7777764
No 76
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=20.99 E-value=88 Score=21.19 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=12.4
Q ss_pred ccCCCCCCEEE------EEEEEe
Q 032149 128 HLSFRPGDIVR------ASVVSF 144 (146)
Q Consensus 128 ~~~~~~GDiV~------A~Vis~ 144 (146)
++.+++||.|. ++|..+
T Consensus 32 ~~~i~vGD~I~f~~~l~~~V~~v 54 (113)
T 1xne_A 32 LKDIKRGDKIIFNDLIPAEVVEV 54 (113)
T ss_dssp TTTCCTTCEEEETTTEEEEEEEE
T ss_pred hhccCCCCEEEEccceEEEEEEE
Confidence 66789999765 666654
No 77
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=20.26 E-value=89 Score=18.04 Aligned_cols=53 Identities=19% Similarity=0.346 Sum_probs=29.5
Q ss_pred CEEEEEEEEEecceEEEEEEe-ecccccccceeeEEeccccccccccccccccCCCCCCEEEEEEE
Q 032149 78 SVVIARVTKVMTRMASADIMC-VGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVV 142 (146)
Q Consensus 78 diViG~V~~v~~~~~~v~I~~-v~~~~l~~~~~g~l~~sdi~~~~~d~~~~~~~~~~GDiV~A~Vi 142 (146)
...-|+|+++......+++.. ..+ ...+.+.+..... + .--+++||-|.|.+-
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~---g~~l~a~it~~s~-----~----~l~L~~G~~V~a~ik 60 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAG---GNKITSIISLDSV-----E----ELGVKEGAELTAVVK 60 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETT---SCEEEEEEEHHHH-----H----HHTCCTTCEEEEECC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCC---CCEEEEEeCHHHH-----H----HCCCCCCCEEEEEEe
Confidence 357899999977664444421 110 1123344442211 1 345799999999864
Done!