BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032152
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 152 bits (383), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 98/158 (62%), Gaps = 14/158 (8%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV +E E ++ + P R+FKAF L+A N +PK+ PQAIK EIL+GDGG G+IK F +
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G + Y KH+ID +DK+N+ YT+IEGD LG LE I Y+ K AS +GGSI K S +
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 122 HT--------------KEKAMGLHKIVEAHLLANPDLY 145
HT KEKA L K++E +L +PD Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 97/158 (61%), Gaps = 14/158 (8%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV +E E ++ + P R+FKAF L+A N +PK+ PQAIK EIL GDGG G+IK F +
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G + Y KH+ID +DK+N+ YT+IEGD LG LE I Y+ K AS +GGSI K S +
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 122 HT--------------KEKAMGLHKIVEAHLLANPDLY 145
HT KEKA L K++E +L +PD Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 14/158 (8%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV +E E ++ + +R+FKAF L+ N +PK+ PQAI SVE ++G+GG G+IK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G FKY K R+DE+D NF+ Y+VIEG +G LE I ++K A+ +GGSI K+++++
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
HTK K MG L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 133 bits (334), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 14/158 (8%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV +E E ++ + +R+FKAF L+ N PK+ PQAI SVE ++G+GG G+IK +F +
Sbjct: 1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G FKY K R+DE+D NF+ Y+VIEG +G LE I ++K A+ NGGSI K+ +++
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
HTK K MG L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 100/158 (63%), Gaps = 14/158 (8%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV +E E ++ + +R+FKAF L+ N PK+ PQAI SVE ++G+GG G+IK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G FKY K R+DE+D NF+ Y+VIEG +G LE I ++K A+ +GGSI K+++++
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
HTK K MG L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 100/158 (63%), Gaps = 14/158 (8%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV +E E ++ + +R+FKAF L+ N PK+ PQAI SVE ++G+GG G+IK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G FKY K R+DE+D NF+ Y+VIEG +G LE I ++K A+ +GGSI K+++++
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
HTK K MG L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 132 bits (332), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 99/158 (62%), Gaps = 14/158 (8%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV +E E ++ + +R+FKAF L+ N PK+ PQAI SVE + G+GG G+IK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G FKY K R+DE+D NF+ Y+VIEG +G LE I ++K A+ +GGSI K+++++
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
HTK K MG L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 14/158 (8%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV +E E ++ + +R+FKAF L+ P++ PQAI SVE + G+GG G+IK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G FKY K R+DE+D NF+ Y+VIEG +G LE I ++K A+G+GGSI K+++++
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
HTK K MG L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 14/158 (8%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV +E E ++ + +R+FKAF L+ N PK+ PQAI SVE ++G+GG G+IK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G FKY K R+DE+D NF+ Y+VIEG +G LE I ++K A+ +GGSI K+++++
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
HTK K +G L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKELGETLLRAVESYLLAHSDAY 158
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 14/158 (8%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV +E E ++ + +RMFKAF L+ +PK+ PQAI SVE ++G+GG G+IK NF +
Sbjct: 1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G FKY K R+DE+D NF+ Y+VIEG +G LE I ++K A+ +GG + K+++++
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
HTK K MG L + VE++LLA+ D Y
Sbjct: 121 HTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 14/159 (8%)
Query: 1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
MGV +E E ++ + ++FKAF L+A N +PK+ PQA+K EIL+GDGG G+IK F
Sbjct: 1 MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 61 DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
+G ++ Y KH+I +DK N Y++IEGD L +E I Y+ K ++ +GG+I K S+
Sbjct: 61 EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSK 120
Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
+HT KEKA L K++E +L +P Y
Sbjct: 121 YHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEY 159
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 88/160 (55%), Gaps = 15/160 (9%)
Query: 1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
M KE + +AP R+FKA LE H L K P KS EI++GDGG G++ F
Sbjct: 7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 61 DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
DG Y H+ DE+D NF CKYT+ EGD+L +E +VY+VK EA G GGS K+
Sbjct: 67 DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVG-GGSKGKITVT 125
Query: 121 FHTK--------------EKAMGLHKIVEAHLLANPDLYA 146
+H K +KA +K VE +L ANP+++A
Sbjct: 126 YHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 14/155 (9%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV FE E +AVA +++FKA ++ + +PK++ Q I+SVEI++G+GG G++K +
Sbjct: 1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
GG+ Y H+ID +D+ +F Y+++ G L LE I ++ K + +GGSI K+ +F
Sbjct: 60 GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKF 119
Query: 122 HT-------------KEKAMGLHKIVEAHLLANPD 143
HT K + GL K VE ++LANP+
Sbjct: 120 HTKGDVLSDAVREEAKARGTGLFKAVEGYVLANPN 154
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 15/155 (9%)
Query: 1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
MGV E++++V+ ++F+ F ++ LPK P A KSVEI +GDGG G++KI
Sbjct: 1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 61 DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
DGG RID ++K+ Y+VI+GD+L +ESI V + +GGSICK +
Sbjct: 60 DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAI 119
Query: 121 FHTK--------------EKAMGLHKIVEAHLLAN 141
FHTK E+ L K +EA+L+AN
Sbjct: 120 FHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 15/156 (9%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV FE E+++ VAP+ ++KA +A N +PK + + KSVE ++G+GG G+IK F +
Sbjct: 1 GVFTFEDEINSPVAPATLYKALVTDADNVIPKAL-DSFKSVENVEGNGGPGTIKKITFLE 59
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G K+ H+I+ +D+ N Y+V+ G L E I +D K A NGGS K+ ++
Sbjct: 60 DGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKY 119
Query: 122 HT--------------KEKAMGLHKIVEAHLLANPD 143
T K KA L K +EA+LLA+PD
Sbjct: 120 ETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPD 155
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 15/157 (9%)
Query: 1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
MGV F+ E ++ +AP++++KA +A +PK V + I+SVEI++G+GG G+IK F
Sbjct: 1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 61 DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
+GG KY H+I+ +D+ N Y+++ G L +E I ++ K NGGSI KV +
Sbjct: 60 EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIK 119
Query: 121 FHTK------------EKAMG--LHKIVEAHLLANPD 143
TK KA G K +E++L A+PD
Sbjct: 120 IETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 14/155 (9%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
G+ FE E S+ VAP++++KA ++ +PK++ + I+SVEI++G+GG G+IK
Sbjct: 1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G+ + H++D +D+ N Y++I G+ L LE I Y+ K +GGSI K+ +F
Sbjct: 60 DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119
Query: 122 HTKE-------------KAMGLHKIVEAHLLANPD 143
HTK K +GL K +E ++LA+PD
Sbjct: 120 HTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 15/156 (9%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV FE E ++ +AP+R++KA +A +PK V +AI+S+E ++G+GG G+IK +
Sbjct: 1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
GG KY H+I+ +D+ N R Y+++ G L +E I ++ K NGGSI KV +
Sbjct: 60 GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPD 143
TK KA G K +E +L A+P+
Sbjct: 120 ETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE 155
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 15/158 (9%)
Query: 2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
GV F E S++VAP++++KA ++ K + I+S+E+++G+GG G+IK +
Sbjct: 1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQK-IDGPIQSIELVEGNGGVGTIKKITANE 59
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
G + ++D +D+ N Y+++ G L LE + ++ K A GGSI KV +F
Sbjct: 60 GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKF 119
Query: 122 HTK--------------EKAMGLHKIVEAHLLANPDLY 145
HTK K G K +E ++LANP Y
Sbjct: 120 HTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY 157
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 15/155 (9%)
Query: 1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
MG E++++V+ ++F L+ +PK A KSVE+ +GDGGAG+++I
Sbjct: 1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLP 59
Query: 61 DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
+G R D ++K+ TVI+GD+L +ESI + + +GGSI K +
Sbjct: 60 EGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAI 119
Query: 121 FHTKEKAM--------------GLHKIVEAHLLAN 141
FHTK A+ L K +EA+L+AN
Sbjct: 120 FHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 18/159 (11%)
Query: 1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
MGV+ E E ++++ ++++ + + PK +P+ I+ E L+GDGG G+IK F
Sbjct: 6 MGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFV 65
Query: 61 DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLG-TILESIVYDVKFEASGNGGSICKVAS 119
G+F K ID +D++N Y+V EG L LE IV++ K + G I K +
Sbjct: 66 --GDFGSTKQHIDMVDRENCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTT 123
Query: 120 EFHTK---------------EKAMGLHKIVEAHLLANPD 143
+++TK E+ G K VE+ LLANPD
Sbjct: 124 KYYTKGDDIELSKDYLEAGIERFEGFTKAVESFLLANPD 162
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
Length = 155
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG 62
V F + +V ++ + +PK++P +K V++++GDGG G+I I NF
Sbjct: 2 VKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPE 61
Query: 63 GNFKYAKHRIDELDKDNFRCKYTVIEGDMLG 93
+ Y + I E D+ + VIEG L
Sbjct: 62 VSPSYQREEITEFDESSHEIGLQVIEGGYLS 92
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG 62
+ F + + V ++ A + +PK++P +K V++++GDGG G+ I NF G
Sbjct: 2 IKEFNTQTTLNVGLEALWAAQSKDITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPG 61
Query: 63 -GNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKV 117
Y + I E D+ + V+EG L L +F A ++ V
Sbjct: 62 IAPVNYQREVITEYDELSHTIGLQVVEGGYLNQGLSYYKTTFQFSAISENKTLVNV 117
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNFAD 61
V + E +V + + F + H+ + K P I+ ++ +GD G GSI N+
Sbjct: 16 VGKLETDVEIKASADKFHHMFAGKPHH-VSKASPGNIQGCDLHEGDWGTVGSIVFWNYVH 74
Query: 62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDML 92
G K AK RI+ ++ D + VIEGD++
Sbjct: 75 DGEAKVAKERIEAVEPDKNLITFRVIEGDLM 105
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 31 LPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
LP L+P A + +EI+ GDGG G+I F G K + +D ++ K IEG
Sbjct: 57 LPDLLPGAFEKLEII-GDGGVGTILDXTFVPGEFPHEYKEKFILVDNEHRLKKVQXIEGG 115
Query: 91 MLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIVEAHLLANP 142
L + + +G + K ++E+H K + + KIVE + P
Sbjct: 116 YLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHVKPEFV---KIVEPLITTGP 164
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 32 PKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
P+ +K ++ GDG GS++ G F + R++ +D D+ + V+ G+
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGE 107
>pdb|3H7U|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme
Akr4c9
Length = 335
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 16 PSRMFK-AFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
P+R+ K + ++ N LP +P K++E L G A +I ++NF+
Sbjct: 136 PARIKKGSVGIKPENLLPVDIPSTWKAMEALYDSGKARAIGVSNFS 181
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 63 GNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEAS 108
G KY K + + DK NF K V+ GT+ + V+D + S
Sbjct: 2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTS 47
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 32 PKLVPQAIKSVEILQGDG-GAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
PK+ I+ I+QGDG G ++ G + R++ LD++ ++V+ GD
Sbjct: 103 PKVYKNFIRQCRIVQGDGLHVGDLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGD 162
>pdb|2AI7|A Chain A, S.Pneumoniae Polypeptide Deformylase Complexed With Sb-
485345
pdb|2AIA|A Chain A, S.Pneumoniae Pdf Complexed With Sb-543668
Length = 203
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 21 KAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKD 78
+A+ LEA + PK+V +++ + +G+ G + + G ++A+ +D DKD
Sbjct: 101 EAYDLEAIMYNPKIVSHSVQDAALGEGE---GCLSVDRNVPGYVVRHARVTVDYFDKD 155
>pdb|2AIE|P Chain P, S.Pneumoniae Polypeptide Deformylase Complexed With Sb-
505684
Length = 203
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 21 KAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKD 78
+A+ LEA + PK+V +++ + +G+ G + + G ++A+ +D DKD
Sbjct: 101 EAYDLEAIMYNPKIVSHSVQDAALGEGE---GCLSVDRNVPGYVVRHARVTVDYFDKD 155
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 32 PKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
P+ +K ++ GDG GS++ G + R++ +D D+ + V+ G+
Sbjct: 48 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGE 106
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 32 PKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
P+ +K ++ GDG GS++ G + R++ +D D+ + V+ G+
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGE 107
>pdb|3STR|P Chain P, Strep Peptide Deformylase With A Time Dependent
Thiazolidine Hydroxamic Acid
pdb|3SW8|P Chain P, Strep Peptide Deformylase With A Time Dependent
Dichlorobenzamide- Reverse Hydroxamic Acid
pdb|4EOX|P Chain P, X-Ray Structure Of Polypeptide Deformylase Bound To A
Acylprolinamide Inhibitor
Length = 203
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 21 KAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKD 78
+A+ LEA + PK+V +++ + +G+ G + + G ++A+ +D DKD
Sbjct: 101 EAYDLEAIMYNPKIVSHSVQDAALGEGE---GCLSVDRNVPGYVVRHARVTVDYFDKD 155
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 32 PKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
P+ +K ++ GDG GS++ G + R++ +D D+ + V+ G+
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGE 107
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 32 PKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
P+ +K ++ GDG GS++ G + R++ +D D+ + V+ G+
Sbjct: 63 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGE 121
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 66 KYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEAS 108
KY K + + DK NF K V+ GT+ + V+D + S
Sbjct: 2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTS 44
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 39 IKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
+K ++ GDG GS++ G + R++ +D D+ + V+ G+
Sbjct: 67 VKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGE 118
>pdb|3SVJ|P Chain P, Strep Peptide Deformylase With A Time Dependent
Thiazolidine Amide
Length = 203
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 21 KAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKD 78
+A+ LEA + PK+V +++ + +G+ G + + G ++A+ +D DKD
Sbjct: 101 EAYDLEAIMYNPKIVSHSVQDAALGEGE---GXLSVDRNVPGYVVRHARVTVDYFDKD 155
>pdb|1LM6|A Chain A, Crystal Structure Of Peptide Deformylase From
Streptococcus Pneumoniae
Length = 215
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 21 KAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKD 78
+A+ LEA + PK+V +++ + +G+ G + + G ++A+ +D DKD
Sbjct: 113 EAYDLEAIMYNPKIVSHSVQDAALGEGE---GXLSVDRNVPGYVVRHARVTVDYFDKD 167
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 26.2 bits (56), Expect = 6.3, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 51 AGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGN 110
AG +TNF + G F ++ + D ++C LG + +DV E S
Sbjct: 61 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCG--------LGINSRGLSFDVSLEVSQG 112
Query: 111 GG 112
G
Sbjct: 113 PG 114
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 32 PKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
P+ +K ++ GDG GS++ G + R++ +D D+ + ++ G+
Sbjct: 63 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGE 121
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG 47
M E + A + + K FL A PKL Q + E+LQG
Sbjct: 84 MMIESNIIHAAHQNDVNKLLFLGASCIYPKLAKQPMAESELLQG 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,489,430
Number of Sequences: 62578
Number of extensions: 183961
Number of successful extensions: 439
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 44
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)