Query 032152
Match_columns 146
No_of_seqs 136 out of 1007
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:18:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 6.9E-41 1.5E-45 243.8 19.0 139 1-141 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 3.4E-35 7.3E-40 212.9 18.4 136 4-141 1-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 2.6E-18 5.6E-23 120.3 15.2 110 5-123 2-111 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 1.6E-15 3.5E-20 106.0 18.6 108 3-123 1-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 1.3E-15 2.8E-20 108.1 15.0 109 6-123 1-114 (144)
6 cd07813 COQ10p_like Coenzyme Q 99.6 1.6E-14 3.5E-19 102.2 13.9 107 6-123 1-107 (138)
7 cd07819 SRPBCC_2 Ligand-bindin 99.6 1E-13 2.2E-18 97.3 16.4 110 4-123 2-112 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.6 5E-14 1.1E-18 99.7 14.8 110 6-123 1-110 (142)
9 cd08865 SRPBCC_10 Ligand-bindi 99.6 4.1E-13 9E-18 93.6 15.8 107 6-123 1-108 (140)
10 cd07822 SRPBCC_4 Ligand-bindin 99.5 1.1E-11 2.4E-16 86.6 17.0 109 6-123 2-111 (141)
11 cd08862 SRPBCC_Smu440-like Lig 99.5 1E-11 2.2E-16 87.0 16.8 106 5-123 2-107 (138)
12 PRK10724 hypothetical protein; 99.4 7.6E-12 1.7E-16 91.7 14.7 109 4-123 15-123 (158)
13 cd07820 SRPBCC_3 Ligand-bindin 99.4 1.3E-11 2.8E-16 87.6 14.8 108 6-123 1-111 (137)
14 cd07812 SRPBCC START/RHO_alpha 99.4 1.8E-11 3.9E-16 83.3 14.6 108 7-123 2-110 (141)
15 cd07817 SRPBCC_8 Ligand-bindin 99.4 1.7E-11 3.8E-16 85.9 13.1 105 5-123 1-105 (139)
16 cd05018 CoxG Carbon monoxide d 99.4 2.9E-11 6.2E-16 85.1 13.9 111 5-123 2-112 (144)
17 cd07825 SRPBCC_7 Ligand-bindin 99.4 4.2E-11 9E-16 84.8 14.5 111 6-123 2-114 (144)
18 cd08860 TcmN_ARO-CYC_like N-te 99.4 2.3E-11 5E-16 87.9 13.3 108 5-123 2-112 (146)
19 cd07818 SRPBCC_1 Ligand-bindin 99.4 8.9E-11 1.9E-15 83.8 15.6 110 4-123 2-116 (150)
20 PF03364 Polyketide_cyc: Polyk 99.3 6.6E-11 1.4E-15 82.5 13.9 101 12-123 1-103 (130)
21 cd07814 SRPBCC_CalC_Aha1-like 99.3 9.9E-11 2.1E-15 81.9 14.5 109 6-123 2-110 (139)
22 cd07824 SRPBCC_6 Ligand-bindin 99.3 3.8E-10 8.2E-15 80.8 15.9 106 6-123 3-111 (146)
23 cd07823 SRPBCC_5 Ligand-bindin 99.2 4.3E-10 9.3E-15 80.5 13.7 110 7-123 2-113 (146)
24 COG3427 Carbon monoxide dehydr 99.1 5.8E-09 1.3E-13 75.2 12.9 109 5-123 2-112 (146)
25 COG5637 Predicted integral mem 99.1 2.8E-09 6.1E-14 78.9 11.0 106 4-123 70-176 (217)
26 PF06240 COXG: Carbon monoxide 99.0 3.4E-08 7.3E-13 70.6 14.1 105 9-123 2-108 (140)
27 cd08899 SRPBCC_CalC_Aha1-like_ 98.9 1.1E-07 2.3E-12 69.2 13.4 122 3-142 10-139 (157)
28 COG2867 Oligoketide cyclase/li 98.8 6.4E-08 1.4E-12 69.5 10.0 110 4-123 2-111 (146)
29 cd08898 SRPBCC_CalC_Aha1-like_ 98.8 2.8E-07 6.1E-12 64.9 11.9 125 5-139 2-144 (145)
30 cd07826 SRPBCC_CalC_Aha1-like_ 98.7 1.7E-06 3.7E-11 61.7 14.7 126 6-139 2-141 (142)
31 cd08895 SRPBCC_CalC_Aha1-like_ 98.7 3.3E-06 7.2E-11 60.3 15.3 128 5-139 1-145 (146)
32 cd08894 SRPBCC_CalC_Aha1-like_ 98.7 2E-06 4.4E-11 60.9 14.0 122 6-138 2-137 (139)
33 cd08876 START_1 Uncharacterize 98.7 4.2E-06 9.1E-11 62.4 16.4 117 4-123 41-166 (195)
34 cd08893 SRPBCC_CalC_Aha1-like_ 98.6 1.7E-06 3.7E-11 60.2 13.0 124 5-138 1-134 (136)
35 cd08900 SRPBCC_CalC_Aha1-like_ 98.6 7.3E-06 1.6E-10 58.3 15.7 126 6-138 2-141 (143)
36 cd08896 SRPBCC_CalC_Aha1-like_ 98.6 8.4E-06 1.8E-10 58.2 15.9 128 6-139 2-145 (146)
37 cd08897 SRPBCC_CalC_Aha1-like_ 98.5 3.6E-06 7.9E-11 59.2 12.0 119 5-139 1-132 (133)
38 cd08891 SRPBCC_CalC Ligand-bin 98.3 6.3E-05 1.4E-09 53.8 14.8 122 6-138 2-147 (149)
39 PF08327 AHSA1: Activator of H 98.2 0.00011 2.5E-09 50.1 13.6 99 13-123 1-99 (124)
40 cd08901 SRPBCC_CalC_Aha1-like_ 98.2 8.1E-05 1.8E-09 52.6 13.1 118 6-140 2-132 (136)
41 cd08892 SRPBCC_Aha1 Putative h 98.1 0.00021 4.7E-09 49.8 13.0 100 6-123 2-101 (126)
42 cd08873 START_STARD14_15-like 98.0 0.0015 3.3E-08 50.9 16.4 134 4-141 77-235 (235)
43 COG3832 Uncharacterized conser 97.8 0.0019 4E-08 46.7 13.8 101 3-111 7-107 (149)
44 PTZ00220 Activator of HSP-90 A 97.8 0.00043 9.3E-09 48.9 9.6 110 12-138 1-126 (132)
45 COG4276 Uncharacterized conser 97.3 0.015 3.1E-07 41.6 12.1 111 4-123 2-117 (153)
46 cd08913 START_STARD14-like Lip 97.2 0.056 1.2E-06 42.2 15.9 115 5-123 82-209 (240)
47 cd08874 START_STARD9-like C-te 97.1 0.037 8E-07 42.2 14.0 114 5-123 46-175 (205)
48 cd00177 START Lipid-binding ST 96.7 0.13 2.8E-06 37.3 15.9 117 4-123 39-164 (193)
49 cd08863 SRPBCC_DUF1857 DUF1857 96.7 0.061 1.3E-06 38.8 11.2 73 7-88 3-82 (141)
50 cd08914 START_STARD15-like Lip 96.7 0.21 4.6E-06 38.9 15.1 115 4-123 78-205 (236)
51 cd08905 START_STARD1-like Chol 96.6 0.14 3E-06 38.9 13.3 116 5-123 50-178 (209)
52 cd08877 START_2 Uncharacterize 96.6 0.19 4.1E-06 38.1 13.9 117 3-123 45-183 (215)
53 PF08982 DUF1857: Domain of un 96.4 0.081 1.7E-06 38.5 10.3 70 6-84 2-79 (149)
54 cd08906 START_STARD3-like Chol 96.3 0.33 7.2E-06 36.9 14.8 114 5-123 50-178 (209)
55 cd08871 START_STARD10-like Lip 96.2 0.39 8.5E-06 36.5 14.4 133 5-141 48-203 (222)
56 cd08903 START_STARD5-like Lipi 96.1 0.4 8.8E-06 36.3 14.5 115 6-123 48-177 (208)
57 cd08868 START_STARD1_3_like Ch 96.0 0.45 9.7E-06 35.8 15.2 131 6-139 50-206 (208)
58 cd08870 START_STARD2_7-like Li 95.8 0.55 1.2E-05 35.5 16.2 132 4-138 50-206 (209)
59 cd08911 START_STARD7-like Lipi 95.7 0.63 1.4E-05 35.2 15.9 132 4-138 45-204 (207)
60 PF10698 DUF2505: Protein of u 95.5 0.63 1.4E-05 33.7 13.8 107 7-123 2-127 (159)
61 KOG3177 Oligoketide cyclase/li 94.2 0.67 1.4E-05 35.6 9.2 104 10-123 74-180 (227)
62 smart00234 START in StAR and p 94.1 1.8 3.8E-05 32.1 17.3 134 4-140 45-202 (206)
63 cd08872 START_STARD11-like Cer 94.0 2.3 5E-05 33.0 13.7 131 5-141 53-227 (235)
64 cd08869 START_RhoGAP C-termina 92.9 3 6.5E-05 31.2 15.9 113 5-123 45-167 (197)
65 cd08867 START_STARD4_5_6-like 92.7 3.3 7.2E-05 31.0 14.1 116 5-123 47-177 (206)
66 cd08910 START_STARD2-like Lipi 92.6 3.6 7.7E-05 31.2 12.9 115 4-123 49-176 (207)
67 cd08908 START_STARD12-like C-t 89.2 8.1 0.00018 29.4 13.8 115 4-123 52-174 (204)
68 PF01852 START: START domain; 84.8 13 0.00029 27.2 17.2 134 4-142 46-204 (206)
69 cd08904 START_STARD6-like Lipi 62.7 65 0.0014 24.4 13.7 114 5-123 47-175 (204)
70 PF11687 DUF3284: Domain of un 57.0 61 0.0013 22.3 13.0 108 8-134 3-113 (120)
71 PF11485 DUF3211: Protein of u 49.2 96 0.0021 22.2 12.8 99 5-123 2-102 (136)
72 PF04707 PRELI: PRELI-like fam 45.2 1.1E+02 0.0025 21.9 15.2 102 34-139 15-133 (157)
73 KOG0301 Phospholipase A2-activ 40.4 2.2E+02 0.0048 25.9 8.3 72 5-85 148-226 (745)
74 KOG3294 WW domain binding prot 37.0 76 0.0017 25.1 4.5 49 88-138 85-136 (261)
75 KOG2936 Uncharacterized conser 34.4 2.1E+02 0.0047 23.2 6.8 98 5-123 174-274 (301)
76 cd08909 START_STARD13-like C-t 33.3 2.2E+02 0.0047 21.7 13.9 114 4-123 52-175 (205)
77 PF15650 Tox-REase-9: Restrict 33.3 43 0.00092 22.2 2.2 29 51-87 25-53 (89)
78 cd00222 CollagenBindB Collagen 32.9 70 0.0015 24.1 3.7 73 12-92 3-75 (187)
79 KOG2445 Nuclear pore complex c 32.9 2.4E+02 0.0053 23.3 6.9 79 33-123 230-321 (361)
80 cd08902 START_STARD4-like Lipi 30.9 2.4E+02 0.0053 21.5 12.2 113 6-123 49-173 (202)
81 cd08875 START_ArGLABRA2_like C 24.8 3.4E+02 0.0073 21.1 11.0 37 7-45 63-99 (229)
82 cd02853 MTHase_N_term Maltooli 24.4 1.9E+02 0.0041 18.1 4.5 60 31-99 12-71 (85)
83 PF00028 Cadherin: Cadherin do 23.5 1.9E+02 0.0042 17.9 5.2 12 97-108 65-76 (93)
84 PRK14681 hypothetical protein; 23.3 2.6E+02 0.0055 20.5 5.1 55 83-142 61-127 (158)
85 cd07984 LPLAT_LABLAT-like Lyso 21.4 1.1E+02 0.0024 21.8 3.0 22 124-145 163-184 (192)
86 PRK14688 hypothetical protein; 20.9 2.7E+02 0.0059 19.3 4.7 54 83-142 24-89 (121)
87 PRK06032 fliH flagellar assemb 20.1 85 0.0018 23.5 2.1 21 99-119 155-178 (199)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=6.9e-41 Score=243.82 Aligned_cols=139 Identities=43% Similarity=0.736 Sum_probs=131.3
Q ss_pred CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCC-cEEEEEeecCCcceeeEEEEEEeeCCC
Q 032152 1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAG-SIKITNFADGGNFKYAKHRIDELDKDN 79 (146)
Q Consensus 1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~G-sir~~~~~~g~~~~~~kErl~~~D~~~ 79 (146)
|++++++.|+++++||+++|++++ +.++++|+++|++|+|++++||||++| |||.|+|.+|++..++|||++.+|+++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~-~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFK-SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHT-THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHh-cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence 999999999999999999999999 788999999999999999999998777 999999999999899999999999999
Q ss_pred CeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-----------chhhhhHHHHHHHHHhhC
Q 032152 80 FRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-----------KEKAMGLHKIVEAHLLAN 141 (146)
Q Consensus 80 ~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-----------~~~~~~~~k~~e~~l~~~ 141 (146)
++++|+++||+++. .|++|..++++.|.++|+|+++|+++|++ .+++..++|++|+||++|
T Consensus 80 ~~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 80 KTITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TEEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999986 59999999999999999999999999999 678899999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=3.4e-35 Score=212.94 Aligned_cols=136 Identities=41% Similarity=0.632 Sum_probs=122.7
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcccc-ccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHN-FLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC 82 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~-~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (146)
.+++.+++|+|||++||++++ |+.+ +.+.|+| .|++|++++|+|++||||.|+|.+|++..+++|||+.+|+++|++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 368999999999999999999 9984 3455666 799999999999999999999998877789999999999999999
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-----------chhhhhHHHHHHHHHhhC
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-----------KEKAMGLHKIVEAHLLAN 141 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-----------~~~~~~~~k~~e~~l~~~ 141 (146)
+|++++|+++..+|++|+++++|.|.++++|+++|+++|++ ++.+..++++++.|++.+
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEAYL 148 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHHHHhcC
Confidence 99999999875469999999999999888999999999998 678889999999998753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.81 E-value=2.6e-18 Score=120.29 Aligned_cols=110 Identities=23% Similarity=0.472 Sum_probs=96.3
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (146)
.++.+++|++|+++||+++. |+.+ +++|+|. ++++++++++.++|+++.+.+..|. .+++++..+|+.++++.|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g~---~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLS-DFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDGG---TVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHHh-CcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCCC---EEEEEehhcCccCCEEEE
Confidence 57889999999999999999 9999 8999996 8888887665468999999887663 788999999998789999
Q ss_pred EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
++.+|+. ++.++.++++++|.++|+|.++|+..|++
T Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~ 111 (140)
T cd07821 76 RIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDP 111 (140)
T ss_pred EecCCCC---CcccceEEEEEEECCCCccEEEEEEEEec
Confidence 9988742 37789999999999887899999999999
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.73 E-value=1.6e-15 Score=106.04 Aligned_cols=108 Identities=22% Similarity=0.410 Sum_probs=87.7
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152 3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC 82 (146)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (146)
+.+++.++.|+|||++||+++. |+.+ +++|+|. +.++++.+++ ++|..+.++.... ..+.+++..+|++++.+
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~---~~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLS-DPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAGR---GTVREEITEYDPEPRRI 73 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHT-TTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECSC---SEEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEECCCHHHHHHHHh-Chhh-hhhhhhc-eEEEEEcccc-ccceeEEEEeccc---cceeEEEEEecCCCcEE
Confidence 4688999999999999999999 9999 8999996 8889977633 3455555553331 37999999999889999
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.|++. . .++.++.+++++.|.++| |.++|+.+|++
T Consensus 74 ~~~~~-~----~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV-P----SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEEE-S----SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEEE-e----cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 99996 1 247788999999999865 99999999995
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.70 E-value=1.3e-15 Score=108.13 Aligned_cols=109 Identities=15% Similarity=0.261 Sum_probs=81.9
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCC----cceeeEEEEEEeeCCCCe
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGG----NFKYAKHRIDELDKDNFR 81 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~----~~~~~kErl~~~D~~~~~ 81 (146)
++.++.|++||++||+++. |+++ +|+|+|+ +++++++++.+ .+....+....+. -...+..++...++.++.
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~-D~~~-~~~w~p~-v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 76 (144)
T cd08866 1 VVARVRVPAPPETVWAVLT-DYDN-LAEFIPN-LAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPRE 76 (144)
T ss_pred CeEEEEECCCHHHHHHHHh-Chhh-HHhhCcC-ceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCce
Confidence 4678999999999999999 9999 9999997 88999887643 1211111100000 012445556666666889
Q ss_pred eEEEEEecCCCCcceeEEEEEEEEEEcCC-CceEEEEEEEEEe
Q 032152 82 CKYTVIEGDMLGTILESIVYDVKFEASGN-GGSICKVASEFHT 123 (146)
Q Consensus 82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~-g~s~v~w~~~y~~ 123 (146)
+.|++++|+ +++|.+++++.|.++ |+|.++|...+++
T Consensus 77 i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~ 114 (144)
T cd08866 77 LDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKP 114 (144)
T ss_pred EEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEe
Confidence 999998875 678999999999988 6899999999999
No 6
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.63 E-value=1.6e-14 Score=102.23 Aligned_cols=107 Identities=15% Similarity=0.238 Sum_probs=85.0
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT 85 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (146)
++.++.|++|+++||+++. |+++ +|+|+|+ +++++++++++ .+....+....++....+..++. +++ .+++++.
T Consensus 1 ~~~s~~i~ap~~~v~~~i~-D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~ 74 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVA-DVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAE 74 (138)
T ss_pred CeEEEEcCCCHHHHHHHHH-HHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEE
Confidence 3678999999999999999 9999 9999997 88999987654 33444455554432234555554 666 6688999
Q ss_pred EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.++|+ ++.+.+++++.|.++|+|.|+|..+|++
T Consensus 75 ~~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~ 107 (138)
T cd07813 75 LVDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEF 107 (138)
T ss_pred ecCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEE
Confidence 88883 6789999999999888999999999999
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.61 E-value=1e-13 Score=97.27 Aligned_cols=110 Identities=17% Similarity=0.253 Sum_probs=81.8
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC 82 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (146)
.+++.++.|+|||++||+++. |+.+ +|+|+|. +.++++++++ ++.+....+++..++-.....-+++ .++ .+++
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i 76 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLA-DVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV 76 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHh-Chhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence 578999999999999999999 9999 9999996 8899986553 3333344455543321111111222 233 6789
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
+|+..+|. +..++.++++++|.++ +|.|+|+.++++
T Consensus 77 ~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~ 112 (140)
T cd07819 77 SWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVEL 112 (140)
T ss_pred EEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEe
Confidence 99998875 3678899999999876 799999999998
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.61 E-value=5e-14 Score=99.74 Aligned_cols=110 Identities=23% Similarity=0.337 Sum_probs=82.4
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT 85 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (146)
++++++|++|+++||+++. |+.+ +|+|+|. .+++.++++++...++.+....++..... +....+|++.+++.|.
T Consensus 1 ~~~s~~i~ap~~~V~~~l~-D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~ 75 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA-DAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW-TSRRVLDPEGRRIVFR 75 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH-hHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE-EEEEEEcCCCCEEEEE
Confidence 4689999999999999999 9999 9999996 45554544322224555555533322222 3445678888899999
Q ss_pred EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.+++.. .+..+.+++.|+|.++++|.|+|+.+|++
T Consensus 76 ~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~ 110 (142)
T cd08861 76 QEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTL 110 (142)
T ss_pred EeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEE
Confidence 887533 27889999999999878899999999999
No 9
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.57 E-value=4.1e-13 Score=93.59 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=84.8
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (146)
++.++.|+||+++||+++. |+.+ +++|.|. +.+++.+.+. .++|+...+....++....++++++.+|+ ++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAYLA-DFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHHHH-Cccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEE
Confidence 3578899999999999999 9999 8999997 6778876443 46788888876644333467889988875 578888
Q ss_pred EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
...+++ + .+..++.+.|.++ +|.++|+.+|+.
T Consensus 77 ~~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~ 108 (140)
T cd08865 77 RGSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEP 108 (140)
T ss_pred EecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence 876552 2 3688999999865 699999999988
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.48 E-value=1.1e-11 Score=86.56 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=83.3
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC-CcceeeEEEEEEeeCCCCeeEE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG-GNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g-~~~~~~kErl~~~D~~~~~~~y 84 (146)
++.++.|+||+++||+++. |+.+ +|+|+|. +.+++... .++|+...+.+..+ +....+.+++.++|+. +++.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLT-DFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHHh-cccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence 6789999999999999999 9999 8999985 55655321 45677777776543 2334677888888875 58889
Q ss_pred EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
+...++.. ......++.|+|.++++|.++|+..|..
T Consensus 76 ~~~~~~~~---~~~~~~~~~~~~~~~~~T~~~~~~~~~g 111 (141)
T cd07822 76 RGGLPFPG---LLDGEHSFELEPLGDGGTRFVHRETFSG 111 (141)
T ss_pred EecCCCCc---EeeEEEEEEEEEcCCCcEEEEEeeEEEE
Confidence 98666532 2356689999998677899999988875
No 11
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.47 E-value=1e-11 Score=86.97 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=81.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (146)
+++.++.|+||+++||+++. |+.+ +|+|+|+ +++++...+..++|+...++...+. .+..++.++++.+ +++|
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~i~~~~p~~-~~~~ 74 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT-DVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGLV---RSTFTVTELRPGH-SFTW 74 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCCC---ceEEEEEEecCCC-EEEE
Confidence 67899999999999999999 9999 8999996 8888876443267776666544332 5677888888654 6877
Q ss_pred EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
+... + ...+..++.|+|.++++|.++|+.+|..
T Consensus 75 ~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~ 107 (138)
T cd08862 75 TGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSG 107 (138)
T ss_pred EecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence 7532 2 2345689999998767899999999986
No 12
>PRK10724 hypothetical protein; Provisional
Probab=99.44 E-value=7.6e-12 Score=91.71 Aligned_cols=109 Identities=12% Similarity=0.252 Sum_probs=85.1
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK 83 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (146)
..+..++.|++||+++|+++. |.++ +|+|+|. .+++++++.++. +.+..++.+-++-......|.. +++++ ++.
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~-Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~ 88 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVN-DVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SIL 88 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHH-HHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEE
Confidence 467888999999999999999 9999 9999996 777788765432 2344455554443345556644 55554 899
Q ss_pred EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
+.+++|+ ++++.+.|+|.|.++++|.|++..+|+.
T Consensus 89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef 123 (158)
T PRK10724 89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEF 123 (158)
T ss_pred EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEE
Confidence 9999884 7889999999998877899999999999
No 13
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.43 E-value=1.3e-11 Score=87.56 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=85.2
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC---CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD---GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC 82 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd---g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (146)
++.++.|+||+++||+.+. |..+ +|+|+|+ +.++++++.+ ..+|+.-.+.+..++-.-.++-+++.+++ ++.+
T Consensus 1 ~~~s~~I~ap~e~V~~~~~-d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p-~~~f 76 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS-RPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEP-PRRF 76 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc-Ccch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcC-CCeE
Confidence 4678999999999999999 9999 9999997 7788887432 25578888887765422345666676654 5568
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
++..+.|+ +..+..++.+.|.++ ||.++++++|+.
T Consensus 77 ~~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~ 111 (137)
T cd07820 77 VDEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRL 111 (137)
T ss_pred EEEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeC
Confidence 88887764 567888999999876 699999999999
No 14
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=1.8e-11 Score=83.29 Aligned_cols=108 Identities=19% Similarity=0.349 Sum_probs=84.9
Q ss_pred EEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152 7 EKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT 85 (146)
Q Consensus 7 ~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (146)
+.++.|++|+++||+++. |+.+ +++|.|+ +.++++.++. ...|....+.+..+ .......++..+++ +..++|+
T Consensus 2 ~~~~~i~a~~~~v~~~l~-d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS-DPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHHh-Chhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEE
Confidence 568899999999999998 9999 8999997 7888876543 45666666655412 22356778887777 6688899
Q ss_pred EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
...++.. ..+..++.+.+.++++|.++|+.++.+
T Consensus 77 ~~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~ 110 (141)
T cd07812 77 VTGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDP 110 (141)
T ss_pred EecCCCC----cceeEEEEEEECCCCcEEEEEEEEEec
Confidence 8876643 478899999998765899999999998
No 15
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.39 E-value=1.7e-11 Score=85.86 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=77.6
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (146)
+++.++.|+||+++||+++. |+.+ +|+|.|+ +++++++.+. +.-..+.+.. |....+..++..+++ ++.+.|
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~-D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~-g~~~~~~~~v~~~~~-~~~i~~ 72 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWR-DFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPA-GLSVEWDAEITEQVP-NERIAW 72 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHh-Chhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCC-CCcEEEEEEEeccCC-CCEEEE
Confidence 36789999999999999999 9999 9999996 8888876441 2222222222 333455666665555 446999
Q ss_pred EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
....|. + .+.+++.|.|.++++|.+++++.|++
T Consensus 73 ~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~ 105 (139)
T cd07817 73 RSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEP 105 (139)
T ss_pred EECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEEC
Confidence 876653 3 46789999998777899999999998
No 16
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.38 E-value=2.9e-11 Score=85.10 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=75.1
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (146)
+++.++.|++|+++||+++. |+.+ +++|+|+ +++++.++++. ......+.+...+..-...-++..+|+. +++.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 76 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALN-DPEV-LARCIPG-CESLEKIGPNE-YEATVKLKVGPVKGTFKGKVELSDLDPP-ESYTI 76 (144)
T ss_pred eeeeEEEecCCHHHHHHHhc-CHHH-HHhhccc-hhhccccCCCe-EEEEEEEEEccEEEEEEEEEEEEecCCC-cEEEE
Confidence 57889999999999999999 9999 9999997 77777664321 1111112221111111223455555544 56777
Q ss_pred EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
+....+.. ....+..++.+.|. +++|.++|+.+|++
T Consensus 77 ~~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~ 112 (144)
T cd05018 77 TGEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQV 112 (144)
T ss_pred EEEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEE
Confidence 76543322 25689999999998 66899999999997
No 17
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=4.2e-11 Score=84.84 Aligned_cols=111 Identities=8% Similarity=0.105 Sum_probs=78.9
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC--CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD--GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK 83 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd--g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (146)
++.++.|+|||++||+++. |+.+ +|.|.|.... .....++ -.+|+...+.....+....+..++..+++.+ ++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~-d~~~-~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p~~-~l~ 77 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA-DPRR-HPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGPYRITNHVVAFEENR-LIA 77 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh-Cccc-cceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCceEEEEEEEEECCCC-EEE
Confidence 5788999999999999999 9999 9999985222 2222333 4778888777664222235666778777755 688
Q ss_pred EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
|+..-.+. +......++.++|.++|+|.++++.+|..
T Consensus 78 ~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g 114 (144)
T cd07825 78 WRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSA 114 (144)
T ss_pred EEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccC
Confidence 88531111 13345678999998878899999998876
No 18
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.37 E-value=2.3e-11 Score=87.93 Aligned_cols=108 Identities=14% Similarity=0.199 Sum_probs=79.0
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcc-eeeEEEEEEeeCCCCee
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNF-KYAKHRIDELDKDNFRC 82 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~-~~~kErl~~~D~~~~~~ 82 (146)
..+.+++|++||++||+++. |..+ +|.|.|. ++++++++++ .+.|+--.+....++.. .+..|+ .+|+..+++
T Consensus 2 ~~~~si~i~a~~~~v~~lva-Dv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTN-DIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHHHH-hhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEE
Confidence 46789999999999999999 9999 9999996 8888987654 34443221122223322 333343 378888888
Q ss_pred EEE-EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 83 KYT-VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 83 ~y~-i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.+. ...| |+....++++|+|.++| |.|++..+|+.
T Consensus 77 ~~~~~~~~-----p~~~m~~~W~f~~~~~g-T~V~~~~~~~~ 112 (146)
T cd08860 77 RARRVETG-----PFAYMNIRWEYTEVPEG-TRMRWVQDFEM 112 (146)
T ss_pred EEEEecCC-----CcceeeeeEEEEECCCC-EEEEEEEEEEE
Confidence 774 2222 38899999999999665 99999999997
No 19
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.36 E-value=8.9e-11 Score=83.78 Aligned_cols=110 Identities=18% Similarity=0.150 Sum_probs=80.3
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceee---EEE--EcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCC
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKS---VEI--LQGDGGAGSIKITNFADGGNFKYAKHRIDELDKD 78 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s---~~~--~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~ 78 (146)
.+++.++.|++|+++||+++. |+.+ +|+|.|. ... ++. .+++.++|+...++...+. .....++..+++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~-D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p- 75 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVN-DLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP- 75 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHh-Cccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-
Confidence 368899999999999999999 9999 9999995 332 221 1233467888777655421 133456676765
Q ss_pred CCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
++++.|+...++++. .++..++.++|. +|||.++|+.+|+.
T Consensus 76 ~~~i~~~~~~~~~~~---~~~~~~~~~~~~-~~gT~v~~~~~~~~ 116 (150)
T cd07818 76 NERIEYELRFIKPFE---ATNDVEFTLEPV-GGGTKVTWGMSGEL 116 (150)
T ss_pred CcEEEEEEEecCCcc---ccceEEEEEEEc-CCceEEEEEEEecC
Confidence 567999987644321 267899999999 45799999999986
No 20
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.35 E-value=6.6e-11 Score=82.53 Aligned_cols=101 Identities=24% Similarity=0.439 Sum_probs=71.4
Q ss_pred ecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEEEEecCC
Q 032152 12 AAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDM 91 (146)
Q Consensus 12 i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~ 91 (146)
|+|||++||+++. |+.+ +|+|+|. ++++++++.++. +..-.+....++....+..++.. ++... +.+..++|+
T Consensus 1 V~ap~~~V~~~i~-D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g~- 73 (130)
T PF03364_consen 1 VNAPPEEVWSVIT-DYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTE-DPPER-IRFEQISGP- 73 (130)
T ss_dssp ESS-HHHHHHHHT-TGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEE-ECTTT-EEEESSETT-
T ss_pred CCCCHHHHHHHHH-HHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEE-EEeee-eeeeecCCC-
Confidence 6899999999999 9999 9999996 889999876543 33334555554433455666553 44444 777777774
Q ss_pred CCcceeEEEEEEEEEEcCC--CceEEEEEEEEEe
Q 032152 92 LGTILESIVYDVKFEASGN--GGSICKVASEFHT 123 (146)
Q Consensus 92 ~~~~~~~y~~t~~v~p~~~--g~s~v~w~~~y~~ 123 (146)
++++.+++++.|.++ |+|.++++.+|+.
T Consensus 74 ----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~ 103 (130)
T PF03364_consen 74 ----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEV 103 (130)
T ss_dssp ----EEEEEEEEEEEEETTECCEEEEEEEEEEEE
T ss_pred ----chhcEEEEEEEECCCCcCCCEEEEEEEEEE
Confidence 899999999999875 2455555555443
No 21
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.34 E-value=9.9e-11 Score=81.87 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=79.4
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT 85 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (146)
++.+++|+||+++||+++. |+.+ +|+|+|+ +..++.....| |+.+......++....+..++..+|+. +++.|+
T Consensus 2 i~~s~~I~a~~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRALT-DPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHHcC-CHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence 5788999999999999999 9999 9999995 22222211222 666655444333234678888888866 578999
Q ss_pred EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
...++.. +.-....++.|.|.+ ++|.++|+.++.+
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~ 110 (139)
T cd07814 76 WAFSDET--PGPETTVTVTLEETG-GGTRLTLTHSGFP 110 (139)
T ss_pred ecccCCC--CCCceEEEEEEEECC-CCEEEEEEEEccC
Confidence 8776531 134678899999997 5799999999987
No 22
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=3.8e-10 Score=80.78 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=76.2
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEc--CCCCCCcEEEEEeecC-CcceeeEEEEEEeeCCCCee
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQ--GDGGAGSIKITNFADG-GNFKYAKHRIDELDKDNFRC 82 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~e--Gdg~~Gsir~~~~~~g-~~~~~~kErl~~~D~~~~~~ 82 (146)
++.+..|++||++||+++. |+.+ +|+|+|+ +++++.++ ++.++|+.-....... +....+.-++... +..+.+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~t-D~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~~ 78 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLV-DAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSLL 78 (146)
T ss_pred ceEEEEecCCHHHHHHHHh-Chhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcEE
Confidence 5677899999999999999 9999 9999996 88888876 3346676654443322 2112344455554 455688
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.|.. +|++ + ...+++|.|.++ ||.|+++.+++.
T Consensus 79 ~~~~-~g~~-----~-~~~~~~~~~~~~-gt~vt~~~~~~~ 111 (146)
T cd07824 79 EVRA-SGDL-----E-GVGRWTLAPDGS-GTVVRYDWEVRT 111 (146)
T ss_pred EEEE-EEee-----e-EEEEEEEEEcCC-CEEEEEEEEEEc
Confidence 8875 5642 2 268899999754 699999999996
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.24 E-value=4.3e-10 Score=80.49 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=70.5
Q ss_pred EEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceee--EEEEEEeeCCCCeeEE
Q 032152 7 EKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYA--KHRIDELDKDNFRCKY 84 (146)
Q Consensus 7 ~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~--kErl~~~D~~~~~~~y 84 (146)
+.+++|++||++||+++. |+.+ ++.|+|+ +++++.. |++. ..-.+++..|+-...+ +=++..++++.+++.+
T Consensus 2 ~~~~~v~a~pe~vw~~l~-D~~~-~~~~~pg-~~~~~~~-~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 75 (146)
T cd07823 2 ENEFTVPAPPDRVWALLL-DIER-VAPCLPG-ASLTEVE-GDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVL 75 (146)
T ss_pred CceEEecCCHHHHHHHhc-CHHH-HHhcCCC-ceecccc-CCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence 568899999999999999 9999 8999997 8887754 3221 1122333322211122 1245555557778877
Q ss_pred EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
+.-..+.....--....++++.|. +|+|.++|+++++.
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~l~~~-~~gT~v~~~~~~~~ 113 (146)
T cd07823 76 EATGKDARGQGTAEATVTLRLSPA-GGGTRVTVDTDLAL 113 (146)
T ss_pred EEEEecCCCcceEEEEEEEEEEec-CCcEEEEEEEEEEE
Confidence 754311111011146778888884 56899999999988
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=99.08 E-value=5.8e-09 Score=75.18 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=78.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCC--cceeeEEEEEEeeCCCCee
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGG--NFKYAKHRIDELDKDNFRC 82 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~--~~~~~kErl~~~D~~~~~~ 82 (146)
.++.+..|++|+++||+.+. |+.. +...+|+ ++|++. +|+.- .-.+.+.-|. ..-..+=++..+|+..+++
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~-dpe~-~a~ciPG-~qs~e~-~g~e~---~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~ 74 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLN-DPEQ-VAACIPG-VQSVET-NGDEY---TAKVKLKIGPLKGTFSGRVRFVNVDEPPRSI 74 (146)
T ss_pred cccceEEecCCHHHHHHHhc-CHHH-HHhhcCC-cceeee-cCCeE---EEEEEEeecceeEEEEEEEEEccccCCCcEE
Confidence 46788999999999999998 9999 7899998 999995 46521 1122222221 0012334556668888888
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
+...-+|..- ..-+.++.+++.|.++| |.+.|.++-+-
T Consensus 75 ~i~g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~ 112 (146)
T COG3427 75 TINGSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANV 112 (146)
T ss_pred EEEeeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccc
Confidence 7777553332 37788899999999876 99999999887
No 25
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.06 E-value=2.8e-09 Score=78.92 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=85.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeec-CCcceeeEEEEEEeeCCCCee
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD-GGNFKYAKHRIDELDKDNFRC 82 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~-g~~~~~~kErl~~~D~~~~~~ 82 (146)
..++.+++|++|+++||+.++ |+.+ +|.||.+ +.||++.+... -+|+... ++..-.++-+|+ -|..+.+|
T Consensus 70 i~v~~~V~I~kPae~vy~~W~-dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it-~d~~~e~I 140 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWR-DLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEVEWEAEIT-KDIPGERI 140 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHH-hhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceEEEeehhh-ccCCCcEE
Confidence 678999999999999999999 9999 9999985 99999875542 3455543 443334555655 58999999
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.|+-++|.-.+ -++.++|.+.++..|+|+.+.+|.+
T Consensus 141 ~W~Sl~Ga~v~-----NsG~VrF~~~pg~~t~V~v~lsY~~ 176 (217)
T COG5637 141 QWESLPGARVE-----NSGAVRFYDAPGDSTEVKVTLSYRP 176 (217)
T ss_pred eeecCCCCcCC-----CCccEEeeeCCCCceEEEEEEEecC
Confidence 99999996443 2678999999888889999999999
No 26
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.99 E-value=3.4e-08 Score=70.62 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=67.3
Q ss_pred EEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCC-cc-eeeEEEEEEeeCCCCeeEEEE
Q 032152 9 EVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGG-NF-KYAKHRIDELDKDNFRCKYTV 86 (146)
Q Consensus 9 e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~-~~-~~~kErl~~~D~~~~~~~y~i 86 (146)
+.+|++|+++||+++. |+.. +-+.+|+ +++++.+. +.-.+. ++..-|. +. -..+=++..+|++++.. ..+
T Consensus 2 s~~v~a~~~~vw~~l~-D~~~-l~~ciPG-~~~~e~~~-~~~~~~---~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~ 73 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLS-DPEN-LARCIPG-VESIEKVG-DEYKGK---VKVKVGPIKGTFDGEVRITEIDPPESYT-LEF 73 (140)
T ss_dssp EEEECS-HHHHHHHHT--HHH-HHHHSTT-EEEEEEEC-TEEEEE---EEEESCCCEEEEEEEEEEEEEETTTEEE-EEE
T ss_pred cEEecCCHHHHHHHhc-CHHH-HHhhCCC-cEEeeecC-cEEEEE---EEEEeccEEEEEEEEEEEEEcCCCcceE-eee
Confidence 6789999999999998 9999 7899998 99988764 311122 2222221 10 12334556677777653 344
Q ss_pred EecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 87 IEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 87 ~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
-..+... -.+..+.+++...++++|.+.|+++++-
T Consensus 74 ~g~g~~~--~~~~~~~~~~~~~~~~~T~v~~~~~~~~ 108 (140)
T PF06240_consen 74 EGRGRGG--GSSASANITLSLEDDGGTRVTWSADVEV 108 (140)
T ss_dssp EEEECTC--CEEEEEEEEEEECCCTCEEEEEEEEEEE
T ss_pred eccCCcc--ceEEEEEEEEEcCCCCCcEEEEEEEEEE
Confidence 3333322 3456677777776666699999999998
No 27
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.88 E-value=1.1e-07 Score=69.16 Aligned_cols=122 Identities=15% Similarity=0.059 Sum_probs=85.3
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152 3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC 82 (146)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (146)
..++..++.|+||+++||+++. |+.+ +++|.|. . ..+-.+|....+.+...+ ......++.++|+. +++
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~-~------~~~~~~G~~~~~~~~~~~-~~~~~~~v~e~~p~-~~l 78 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALT-DPER-LARWFAP-G------TGDLRVGGRVEFVMDDEE-GPNATGTILACEPP-RLL 78 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHc-CHHH-HHhhcCC-C------CCCcccCceEEEEecCCC-CCccceEEEEEcCC-cEE
Confidence 3568899999999999999999 9999 8999984 2 123344555555554421 12456677777666 477
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------chhhhhHHHHHHHHHhhCC
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------KEKAMGLHKIVEAHLLANP 142 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------~~~~~~~~k~~e~~l~~~~ 142 (146)
.|+...++ . ....++.|++.+ |+|.++.+.++.+ .+....++..|.+|+-+.+
T Consensus 79 ~~~~~~~~-~-----~~~~~~~l~~~~-~gT~v~~~~~~~~~~~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 79 AFTWGEGG-G-----ESEVRFELAPEG-DGTRLTLTHRLLDERFGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEEecCCC-C-----CceEEEEEEEcC-CCEEEEEEEeccCchhhhhhhcccHHHHHHHHHHHHcCCC
Confidence 78775443 1 235678888875 5799999988877 4566777788888877664
No 28
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.81 E-value=6.4e-08 Score=69.50 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=84.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK 83 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~ 83 (146)
.+++++.-++.+|+++|+++. |... +|+++|- -+..++.+.++ ...+-.++.+-.+-.++..-|.. +++..+.|.
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~-dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVN-DVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSID 76 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHH-HHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhh
Confidence 467888999999999999998 9999 9999996 66667777653 23555565554432234444533 566666777
Q ss_pred EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
-.+++|+ ++-..++|+++|.++++|.|+..++|+.
T Consensus 77 ~~l~~GP-----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF 111 (146)
T COG2867 77 MKLIDGP-----FKYLKGGWQFTPLSEDACKVEFFLDFEF 111 (146)
T ss_pred hhhhcCC-----hhhhcCceEEEECCCCceEEEEEEEeee
Confidence 7788885 7788899999998778999999999999
No 29
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.76 E-value=2.8e-07 Score=64.95 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=75.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (146)
.++.++.|+||+++||+++. |+.. +++|.|... .....|.+..|. +.+..+ ......-++..+++.+ ++.|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t-d~~~-~~~W~~~~~--~~~~~~~~~~g~---~~~~~~-~~~~~~~~i~~~~p~~-~l~~ 72 (145)
T cd08898 2 RIERTILIDAPRERVWRALT-DPEH-FGQWFGVKL--GPFVVGEGATGE---ITYPGY-EHGVFPVTVVEVDPPR-RFSF 72 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc-Chhh-hhhcccccC--CCcccCCcceeE---EecCCC-CccceEEEEEEeCCCc-EEEE
Confidence 57889999999999999999 9999 899998632 111112222232 333322 1113445666665554 6777
Q ss_pred EEEecCC---CC-cceeEEEEEEEEEEcCCCceEEEEEEE-EEe-------------chhhhhHHHHHHHHHh
Q 032152 85 TVIEGDM---LG-TILESIVYDVKFEASGNGGSICKVASE-FHT-------------KEKAMGLHKIVEAHLL 139 (146)
Q Consensus 85 ~i~eg~~---~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~-y~~-------------~~~~~~~~k~~e~~l~ 139 (146)
+...... .+ ..-.....++.|++.+ ++|.|+++.. |.. .+....++..|++||-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 7643320 00 0122356889999986 4699999876 432 2344556666666663
No 30
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.70 E-value=1.7e-06 Score=61.67 Aligned_cols=126 Identities=13% Similarity=0.031 Sum_probs=77.9
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCeeEE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 84 (146)
++.+..++||+++||+++- |... +.+|+...--.+...+.|-.+|..-.+.+. +++....+.=++.++|+.+ ++.|
T Consensus 2 l~i~r~~~ap~e~Vw~a~T-dpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~-~l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAHT-DPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPE-RIVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHhC-CHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEE
Confidence 5667899999999999998 9998 677775432222223344334444444443 2332223344566676654 4555
Q ss_pred EEE-ecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe------------chhhhhHHHHHHHHHh
Q 032152 85 TVI-EGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT------------KEKAMGLHKIVEAHLL 139 (146)
Q Consensus 85 ~i~-eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~------------~~~~~~~~k~~e~~l~ 139 (146)
+-- ++.. -.....++.+.+.+ |+|.++.+..|.. .+.....+..|++||.
T Consensus 79 t~~~~~~~----~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEGLP----DGVALETVTFTELG-GRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecCCC----CCceEEEEEEEECC-CCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 532 3221 12346788999975 6799999888754 2355677778888875
No 31
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.67 E-value=3.3e-06 Score=60.28 Aligned_cols=128 Identities=18% Similarity=0.148 Sum_probs=76.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhcccccccccccc-ceeeEEEEcCCCCCCcEEEEEe--ec------CCcceeeEEEEEEe
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQ-AIKSVEILQGDGGAGSIKITNF--AD------GGNFKYAKHRIDEL 75 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~-~v~s~~~~eGdg~~Gsir~~~~--~~------g~~~~~~kErl~~~ 75 (146)
+++.+..|+||+++||+++. |... +.+|.+. -+. +.....+..+|..-.+.+ .. .+......=++.++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t-d~~~-~~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v 77 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL-DPDA-LAKWLPPDGMT-GTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL 77 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc-CHHH-HhhcCCCCCeE-eEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence 35667899999999999998 9998 7787752 222 222223322333333322 22 11112334467777
Q ss_pred eCCCCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------chhhhhHHHHHHHHHh
Q 032152 76 DKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------KEKAMGLHKIVEAHLL 139 (146)
Q Consensus 76 D~~~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------~~~~~~~~k~~e~~l~ 139 (146)
++.+ ++.|+..-.+... + .....++.+++.+ |+|.++++...-+ .+....++..|++||-
T Consensus 78 ~p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDGIPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred cCCC-EEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCchhhhhHHHHHHHHHHHHHHHHhc
Confidence 7766 6667643222111 1 2347889999885 5799999987643 4556677777777763
No 32
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.66 E-value=2e-06 Score=60.91 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=73.6
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccc-cceeeEEEEcCCCCCCcEEEEEe-ecCCcceeeEEEEEEeeCCCCeeE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVP-QAIKSVEILQGDGGAGSIKITNF-ADGGNFKYAKHRIDELDKDNFRCK 83 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P-~~v~s~~~~eGdg~~Gsir~~~~-~~g~~~~~~kErl~~~D~~~~~~~ 83 (146)
++.+..|+||+++||+++. |... +.+|++ +-+.. ...+.+..+|..-.+.+ .+++..-...=++.++++.+ ++.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t-~p~~-l~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT-DPEH-LAQWWGPEGFTN-TTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC-CHHH-HhhccCcCCCcc-eEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence 5667899999999999998 9988 777764 22221 11222323344333333 23332112234667776655 677
Q ss_pred EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEec------------hhhhhHHHHHHHHH
Q 032152 84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTK------------EKAMGLHKIVEAHL 138 (146)
Q Consensus 84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~~------------~~~~~~~k~~e~~l 138 (146)
|+...++ . ....++.++|.+ |+|.++.+..|... +....++..|++||
T Consensus 78 ~t~~~~~-----~-~~~v~~~~~~~~-~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l 137 (139)
T cd08894 78 YDHGSGP-----P-RFRLTVTFEEQG-GKTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYL 137 (139)
T ss_pred EEeccCC-----C-cEEEEEEEEECC-CCEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 7764331 1 245789999975 67999999887651 12345556666665
No 33
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.66 E-value=4.2e-06 Score=62.40 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=75.4
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCc---ceeeEEEEEEeeCCCC
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGN---FKYAKHRIDELDKDNF 80 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~---~~~~kErl~~~D~~~~ 80 (146)
..+..+..|++||+++|+++. |.+. .|+|.|. +.++++++..+.-..+-...+....+ ...+-.+-...+.++.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~-d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLR-DTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHh-hhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 567888899999999999998 9999 9999996 88889887543212233333332221 1122222122232234
Q ss_pred eeEEEEEecCC--CCc----ceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 81 RCKYTVIEGDM--LGT----ILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 81 ~~~y~i~eg~~--~~~----~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.+...+..++. ++. ....+.+.+.++|.++++|.+++...+++
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp 166 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADP 166 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCC
Confidence 44444433321 110 14677888999999888999999999998
No 34
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.65 E-value=1.7e-06 Score=60.19 Aligned_cols=124 Identities=13% Similarity=0.013 Sum_probs=75.0
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (146)
+++.++.|+|||++||+++. |... ++.|.++.. ..++-.+|.--.+.....+. ..+.=++.+++ +++++.|
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t-d~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~-~~~~l~~ 71 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT-DPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEGEVLESD-PPRRLVH 71 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc-Cchh-hhheecccc-----cccCCcCCCeEEEEeCCCcc-cccceEEEEec-CCCeEEE
Confidence 47789999999999999999 9999 899998621 12333344433333332111 13444566666 4456667
Q ss_pred EEEecCCCC-cceeEEEEEEEEEEcCCCceEEEEEEEEEe---------chhhhhHHHHHHHHH
Q 032152 85 TVIEGDMLG-TILESIVYDVKFEASGNGGSICKVASEFHT---------KEKAMGLHKIVEAHL 138 (146)
Q Consensus 85 ~i~eg~~~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---------~~~~~~~~k~~e~~l 138 (146)
+...++..+ ..-.....++.+.|.++ +|.++.+.+-.+ ...+..+++.|.++|
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~~~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 72 TWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPGSPTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCchhHHHhhhcCHHHHHHHHHHHh
Confidence 754332210 01235677888888754 688777766433 344455666666655
No 35
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.61 E-value=7.3e-06 Score=58.26 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=74.8
Q ss_pred EEEEEEecCCHHHHHHHhhhcccccccccccc-ceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCeeE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQ-AIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFRCK 83 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~-~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~~ 83 (146)
++.+..++||+++||+++. |... +.+|+.+ .--.++..+.|-.+|..-.+.+. .++......=++.++|+.+ ++.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~t-dp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~-~l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAWS-DPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDE-RIV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHhc-CHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCc-eEE
Confidence 4566789999999999998 9998 7788753 11112222333333444334443 3333223344666676655 565
Q ss_pred EEEE--ecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe----------chhhhhHHHHHHHHH
Q 032152 84 YTVI--EGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT----------KEKAMGLHKIVEAHL 138 (146)
Q Consensus 84 y~i~--eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~----------~~~~~~~~k~~e~~l 138 (146)
|+-. .++.. ......++.+.|.+ |+|.++.+...-. ...+..++..|+++|
T Consensus 79 ~t~~~~~~~~~---~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l 141 (143)
T cd08900 79 YTYTMHIGGTL---LSASLATVEFAPEG-GGTRLTLTEQGAFLDGDDDPAGREQGTAALLDNLAAEL 141 (143)
T ss_pred EEEeeccCCcc---ccceEEEEEEEECC-CCEEEEEEEEEecccccchhhhHHHHHHHHHHHHHHHH
Confidence 6642 22211 22345788888875 5699998876521 345566677777776
No 36
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.61 E-value=8.4e-06 Score=58.19 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=73.9
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEe-ecCCcceeeEEEEEEeeCCCCeeEE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNF-ADGGNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~-~~g~~~~~~kErl~~~D~~~~~~~y 84 (146)
+..++.|+||+++||+++. |... +.+|++..=-++...+.|-.+|..-.+.+ .+++..-...=++.++|+.+ ++.|
T Consensus 2 l~i~r~i~a~~e~Vw~a~t-~pe~-~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~-~l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT-EPEL-LKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGE-RLVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC-CHHH-HhccCCCCCccceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCC-EEEE
Confidence 4567899999999999998 9988 67776531001111122222233333333 23332222345677787766 5556
Q ss_pred E--EEec-CCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe------------chhhhhHHHHHHHHHh
Q 032152 85 T--VIEG-DMLGTILESIVYDVKFEASGNGGSICKVASEFHT------------KEKAMGLHKIVEAHLL 139 (146)
Q Consensus 85 ~--i~eg-~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~------------~~~~~~~~k~~e~~l~ 139 (146)
+ +.++ ++...+ ....++.++|.+ |+|.++.+..+.. .+.+..++..|++||.
T Consensus 79 t~~~~~~~~~~~~~--~~~v~~~~~~~~-~gT~Ltl~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKP--FMTAIITFEDEG-GGTRYTARARHWTEADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCC--cEEEEEEEEecC-CcEEEEEEEEeCCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 5 3222 111111 146789999975 5799988766544 1335677777888774
No 37
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.52 E-value=3.6e-06 Score=59.18 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=73.5
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceee--EEEEcCCCCCCcEEEEEee-cCCc-ceeeEEEEEEeeCCCC
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKS--VEILQGDGGAGSIKITNFA-DGGN-FKYAKHRIDELDKDNF 80 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s--~~~~eGdg~~Gsir~~~~~-~g~~-~~~~kErl~~~D~~~~ 80 (146)
|++.++.++||+++||+++. |... +.+|++. ... +...+.|-.+|..-.+.+. .++. ...+.=++.++++.+
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t-d~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~- 76 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT-TPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHK- 76 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC-CHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCC-
Confidence 46788999999999999998 9998 8899643 111 1112234344544444432 2221 112344555665554
Q ss_pred eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe---------chhhhhHHHHHHHHHh
Q 032152 81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT---------KEKAMGLHKIVEAHLL 139 (146)
Q Consensus 81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---------~~~~~~~~k~~e~~l~ 139 (146)
++.|+..++ ...++.++|.+ |+|.++.+ +.+ .+....++..|++||-
T Consensus 77 ~l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 77 LIEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENENPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 777886321 25689999975 56988876 433 4555677777777763
No 38
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.34 E-value=6.3e-05 Score=53.82 Aligned_cols=122 Identities=19% Similarity=0.186 Sum_probs=69.2
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccce-------eeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCC
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAI-------KSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKD 78 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v-------~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~ 78 (146)
++.++.|+||+++||+++. | . +.+|++..- ..+++.-..| |..+ .. ..++. ....=++.++|+.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t-~--~-l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~-~~~g~-~~~~g~v~~v~p~ 72 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT-E--G-FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EI-GEDGT-ECEWGTVLAWEPP 72 (149)
T ss_pred eEEEEEecCCHHHHHHHHH-h--c-hhhccCCCcccccCCCccEEEcccCC--cEEE-Ee-cCCCc-EeceEEEEEEcCC
Confidence 6788999999999999998 8 3 456654211 2333211112 3333 22 22232 1223466677666
Q ss_pred CCeeEEEEE-ecCCCC-cceeEEEEEEEEEEcCCCceEEEEEEEEEe---------------chhhhhHHHHHHHHH
Q 032152 79 NFRCKYTVI-EGDMLG-TILESIVYDVKFEASGNGGSICKVASEFHT---------------KEKAMGLHKIVEAHL 138 (146)
Q Consensus 79 ~~~~~y~i~-eg~~~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---------------~~~~~~~~k~~e~~l 138 (146)
+ ++.|+-. ..+..+ ... .-..++.++|.++++|.++.+...-. ......++..|+++|
T Consensus 73 ~-~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 73 S-RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred C-EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 5 5656643 211111 011 23688999998646799998887643 233456667777665
No 39
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.23 E-value=0.00011 Score=50.11 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=59.7
Q ss_pred cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEEEEecCCC
Q 032152 13 AVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDML 92 (146)
Q Consensus 13 ~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~~ 92 (146)
+||+++||+++. |... +.+|.+......+... | |+++. ...++......=++.++++.+ ++.|+.--++..
T Consensus 1 ~ap~e~Vw~a~t-~~~~-~~~W~~~~~~~~~~~~--G--g~~~~--~~~~g~~~~~~~~v~~~~p~~-~i~~~~~~~~~~ 71 (124)
T PF08327_consen 1 DAPPERVWEALT-DPEG-LAQWFTTSEAEMDFRP--G--GSFRF--MDPDGGEFGFDGTVLEVEPPE-RIVFTWRMPDDP 71 (124)
T ss_dssp SSSHHHHHHHHH-SHHH-HHHHSEEEEEEEECST--T--EEEEE--EETTSEEEEEEEEEEEEETTT-EEEEEEEEETSS
T ss_pred CcCHHHHHHHHC-CHhH-HhhccCCCcceeeeec--C--CEEEE--EecCCCCceeeEEEEEEeCCE-EEEEEEEccCCC
Confidence 699999999998 9998 7888322122222211 2 34443 224433223333577787766 477775333322
Q ss_pred CcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 93 GTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 93 ~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
. -.....++.|.+ .+++|.++.+.+=.+
T Consensus 72 ~--~~~~~v~~~~~~-~~~~T~l~~~~~~~~ 99 (124)
T PF08327_consen 72 D--GPESRVTFEFEE-EGGGTRLTLTHSGFP 99 (124)
T ss_dssp S--CEEEEEEEEEEE-ETTEEEEEEEEEEEH
T ss_pred C--CCceEEEEEEEE-cCCcEEEEEEEEcCC
Confidence 1 235578899999 567898888875444
No 40
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.22 E-value=8.1e-05 Score=52.55 Aligned_cols=118 Identities=13% Similarity=0.043 Sum_probs=73.2
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT 85 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (146)
++.++.|+||+++||+++. |... +.+|.+. -.+.++. +|..-.+.+...++ .+.=++.++++. +++.|+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t-~p~~-l~~W~~~-~~~~~~~-----~Gg~~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~ 70 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV-DPEI-TTKFWFT-GSSGRLE-----EGKTVTWDWEMYGA--SVPVNVLEIEPN-KRIVIE 70 (136)
T ss_pred eeEEEEecCCHHHHHHHhc-CHHH-hcccccc-CCCcccc-----CCCEEEEEEEccCC--ceEEEEEEEcCC-CEEEEE
Confidence 4678999999999999998 9998 7776543 2233332 23333455543322 222355667555 477777
Q ss_pred EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHHhh
Q 032152 86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHLLA 140 (146)
Q Consensus 86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~~ 140 (146)
--.++ +. -..++.+.+.++|+|.++.+...-+ ...+..++..|++||.+
T Consensus 71 w~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 71 WGDPG----EP--TTVEWTFEELDDGRTFVTITESGFPGTDDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred ecCCC----CC--EEEEEEEEECCCCcEEEEEEECCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 63321 12 3478999998657899888876443 13334566777777754
No 41
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.10 E-value=0.00021 Score=49.82 Aligned_cols=100 Identities=10% Similarity=0.070 Sum_probs=61.7
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT 85 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 85 (146)
++.++.|+||+++||+++. |... +.+|... ..+.+...| |..+ +..| .+.=++.++++.+ ++.|+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T-~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g----~~~g~~~~i~p~~-~l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEALT-DEER-VQAFTRS-PAKVDAKVG----GKFS---LFGG----NITGEFVELVPGK-KIVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHHC-CHHH-HHhhcCC-CceecCCCC----CEEE---EeCC----ceEEEEEEEcCCC-EEEEE
Confidence 5677899999999999999 9988 7788753 333333222 3333 3333 1333566666544 55555
Q ss_pred EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
---.+.. . -..-..++.+++. +|+|.++.+....+
T Consensus 67 w~~~~~~-~-~~~s~v~~~l~~~-~~gT~ltl~~~g~~ 101 (126)
T cd08892 67 WRFKSWP-E-GHYSTVTLTFTEK-DDETELKLTQTGVP 101 (126)
T ss_pred EEcCCCC-C-CCcEEEEEEEEEC-CCCEEEEEEEECCC
Confidence 4321211 1 1224678888887 46799888877666
No 42
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.96 E-value=0.0015 Score=50.86 Aligned_cols=134 Identities=11% Similarity=0.129 Sum_probs=84.3
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec--CCcce-eeEEEEEE--eeC
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD--GGNFK-YAKHRIDE--LDK 77 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~--g~~~~-~~kErl~~--~D~ 77 (146)
..+..+..+++|++++|+++. |... .++|.++ ..++++++. +...+-++ +.+.. -...+ .+--+-.. .+.
T Consensus 77 l~fk~e~~vd~s~~~v~dlL~-D~~~-R~~WD~~-~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLLS-DPFK-RPEWDPH-GRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred eEEEEEEEecCCHHHHHHHHh-Ccch-hhhhhhc-ccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCC
Confidence 357788899999999999998 9999 9999985 888998873 22223233 33332 11112 22222211 122
Q ss_pred CC-CeeEEEEEe-cCCCC----cceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHH
Q 032152 78 DN-FRCKYTVIE-GDMLG----TILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHL 138 (146)
Q Consensus 78 ~~-~~~~y~i~e-g~~~~----~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l 138 (146)
.+ ..+...-+. .-.++ -....+.+-+.+.|.++|+|.|+...-.+| -......+..-++||
T Consensus 153 ~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
T cd08873 153 GDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFL 232 (235)
T ss_pred CCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHh
Confidence 22 222333233 11111 125678899999999888999999999999 344456677778888
Q ss_pred hhC
Q 032152 139 LAN 141 (146)
Q Consensus 139 ~~~ 141 (146)
..|
T Consensus 233 ~~~ 235 (235)
T cd08873 233 VTN 235 (235)
T ss_pred ccC
Confidence 764
No 43
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0019 Score=46.66 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=57.7
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152 3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC 82 (146)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (146)
..+++.+..|++|+++||+++. |... +++|+.+-=.+..+.-|. +....+....| +.....-++.++++.. +|
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~T-dpe~-l~~W~~~~~~~~d~r~gg---~~~~~~~~~~g-~~~~~~~~~~~v~p~~-rI 79 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALT-DPEL-LARWFMPGGAEFDARTGG---GERVRFRGPDG-PVHSFEGEYLEVVPPE-RI 79 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhc-CHHH-HHhhcCCCCCccceecCC---ceEEeeecCCC-CeeecceEEEEEcCCc-EE
Confidence 3578899999999999999999 9998 788886211111111121 22223333333 2234455666675555 55
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCC
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNG 111 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g 111 (146)
.|+-.-.+... +...-..++.+++..+|
T Consensus 80 v~tw~~~~~~~-~~~~~~v~~~l~~~~~g 107 (149)
T COG3832 80 VFTWDFDEDGE-PFLKSLVTITLTPEDDG 107 (149)
T ss_pred EEEeccCCCCC-cccCceEEEEEEEecCC
Confidence 56643332211 12334677888886665
No 44
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.75 E-value=0.00043 Score=48.93 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=62.0
Q ss_pred ecCCHHHHHHHhhhccccccccc-cccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEEEEecC
Q 032152 12 AAVAPSRMFKAFFLEAHNFLPKL-VPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90 (146)
Q Consensus 12 i~apa~~vw~~~~~d~~~~~p~~-~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~ 90 (146)
++||+++||+++- |... +.+| .+. ...+++..| |..+. ..+. +.=+..++|+.+ ++.|+---.+
T Consensus 1 f~ap~e~Vw~A~T-dp~~-l~~w~~~~-~~~~d~~~G----G~f~~---~~~~----~~G~~~ev~pp~-rlv~tw~~~~ 65 (132)
T PTZ00220 1 FYVPPEVLYNAFL-DAYT-LTRLSLGS-PAEMDAKVG----GKFSL---FNGS----VEGEFTELEKPK-KIVQKWRFRD 65 (132)
T ss_pred CCCCHHHHHHHHc-CHHH-HHHHhcCC-CccccCCcC----CEEEE---ecCc----eEEEEEEEcCCC-EEEEEEecCC
Confidence 4799999999998 9987 7777 431 222222222 33332 2221 233555666665 4444432121
Q ss_pred CCCcceeEEEEEEEEEEcCCCceEEEEEEE-EEe-------------chhhhh-HHHHHHHHH
Q 032152 91 MLGTILESIVYDVKFEASGNGGSICKVASE-FHT-------------KEKAMG-LHKIVEAHL 138 (146)
Q Consensus 91 ~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~-y~~-------------~~~~~~-~~k~~e~~l 138 (146)
..+... -..|+.++|.++|+|.++.+.. +.. .+.... ++..|+++|
T Consensus 66 ~~~~~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 66 WEEDVY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCCCCc--eEEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 111112 2588999997667899998887 422 233344 466777665
No 45
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.015 Score=41.65 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=74.8
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeec-CCcc-eeeEEEEEE--eeCC
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFAD-GGNF-KYAKHRIDE--LDKD 78 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~-g~~~-~~~kErl~~--~D~~ 78 (146)
+++.....|+||.|.||+... ..++ +...-|... |-.-+|+ -+.|+-....+.+ |.++ ..++-|+++ +|+.
T Consensus 2 ~tF~~~~~i~aP~E~VWafhs-rpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHS-RPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred cceEEeeEecCCHHHHhhhhc-CccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 566777899999999999998 8887 667777533 3333453 2334433333322 3222 477888887 6655
Q ss_pred CCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
. +++=..+.|+... + +..-+-+|.+.+ |+|++.=.+.|++
T Consensus 78 ~-~FtDv~i~gPfp~--~-~WrHtH~F~~eg-g~TvliD~Vsye~ 117 (153)
T COG4276 78 S-RFTDVCITGPFPA--L-NWRHTHNFVDEG-GGTVLIDSVSYEL 117 (153)
T ss_pred c-eeeeeeecCCccc--e-eeEEEeeeecCC-CcEEEEeeEEeec
Confidence 4 5555667776542 2 688899999875 5799999999999
No 46
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.20 E-value=0.056 Score=42.25 Aligned_cols=115 Identities=12% Similarity=0.047 Sum_probs=69.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeecC-Cc--ce-eeEEEEEEeeCCC
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFADG-GN--FK-YAKHRIDELDKDN 79 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~g-~~--~~-~~kErl~~~D~~~ 79 (146)
.+..+..+++|++++++++. |... .++|.++ +.++++++. +..-. +..++..+- ++ .+ .+.-+-...+.++
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~-D~~~-r~~Wd~~-~~e~~vIe~id~~~~-vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLS-DLRR-RPEWDKH-YRSCELVQQVDEDDA-IYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHh-Chhh-hhhhHhh-ccEEEEEEecCCCcE-EEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 45677899999999999998 9999 9999985 888998764 32222 444443321 11 12 2222111122233
Q ss_pred C-e--eEEEEEecCCCC---c--ceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 80 F-R--CKYTVIEGDMLG---T--ILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 80 ~-~--~~y~i~eg~~~~---~--~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
. . +....+.-+-.| + ...++.+-+.+.|.++|.|.+.+...-+|
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 2 1 222222222111 0 14566788999999888999988776666
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.14 E-value=0.037 Score=42.21 Aligned_cols=114 Identities=10% Similarity=-0.045 Sum_probs=71.5
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEee-c--C--CcceeeEEEEEEeeCC
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFA-D--G--GNFKYAKHRIDELDKD 78 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~-~--g--~~~~~~kErl~~~D~~ 78 (146)
.+..+.++++|++++|+++. |... .++|.+ .++++++++.- ....-++ +.+. + . .+-..+.-+ ...++.
T Consensus 46 ~~~ge~~v~as~~~v~~ll~-D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y-~~~~~Pwp~~~~~RDfV~l~-~~~~~~ 120 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVK-DPRT-RFLYDT-MIKTARIHKTFTEDICLVY-LVHETPLCLLKQPRDFCCLQ-VEAKEG 120 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHh-Ccch-hhhhHH-hhhheeeeeecCCCeEEEE-EEecCCCCCCCCCCeEEEEE-EEEECC
Confidence 45577899999999999998 9999 999998 59999988742 2223233 3322 1 2 111222222 223333
Q ss_pred CC-eeEEEEEecCCCC------cceeEEEEEEEEEEc---CCCceEEEEEEEEEe
Q 032152 79 NF-RCKYTVIEGDMLG------TILESIVYDVKFEAS---GNGGSICKVASEFHT 123 (146)
Q Consensus 79 ~~-~~~y~i~eg~~~~------~~~~~y~~t~~v~p~---~~g~s~v~w~~~y~~ 123 (146)
+. .+.-.-++-+..| -....+.+-+.++|. ++|.|.++..+..+|
T Consensus 121 ~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DP 175 (205)
T cd08874 121 ELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVAL 175 (205)
T ss_pred CcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECC
Confidence 33 3322222321111 124567888999998 778899999999888
No 48
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.74 E-value=0.13 Score=37.30 Aligned_cols=117 Identities=9% Similarity=0.021 Sum_probs=69.7
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCc--c-eeeEEEEEEeeCCCC
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGN--F-KYAKHRIDELDKDNF 80 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~--~-~~~kErl~~~D~~~~ 80 (146)
..+..+.++++|++++++++. |... .++|-|. +.++++++..+..-.+....+....+ . ..+--+-...++++.
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~-d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~ 115 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLM-DIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT 115 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHh-CCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence 456678899999999999998 9887 8999985 88888886532223444444443221 1 122222222233232
Q ss_pred e-eEEEEEecCCCC---ccee--EEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 81 R-CKYTVIEGDMLG---TILE--SIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 81 ~-~~y~i~eg~~~~---~~~~--~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
. +...-++.+..| +.+. .+.+-+.++|.++++|.+++.+..++
T Consensus 116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~ 164 (193)
T cd00177 116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDP 164 (193)
T ss_pred EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCC
Confidence 1 122222221111 1122 23456788998788999999999999
No 49
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=96.69 E-value=0.061 Score=38.77 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=51.6
Q ss_pred EEEEEecCC-------HHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCC
Q 032152 7 EKEVSAAVA-------PSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDN 79 (146)
Q Consensus 7 ~~e~~i~ap-------a~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~ 79 (146)
+..+.||-| .+++|+-+.....+ -..++|+ +.+|++++.++ ....|.++|++. .++|+++ +++.
T Consensus 3 ~~tvpIN~p~~~p~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~~-~~l~Rel~f~~~----~v~e~vt-~~~~- 73 (141)
T cd08863 3 EHTVPINDPGNIPTLTRAQLWRGLVLRARE-PQLFVPG-LDRCEVLSESG-TVLERELTFGPA----KIRETVT-LEPP- 73 (141)
T ss_pred cEEEecCCCCCCCccCHHHHHhHHHhhhCC-chhcccc-cceEEEEecCC-CEEEEEEEECCc----eEEEEEE-ecCC-
Confidence 344555543 67999988745555 5577885 89999997654 246699999986 7999976 4443
Q ss_pred CeeEEEEEe
Q 032152 80 FRCKYTVIE 88 (146)
Q Consensus 80 ~~~~y~i~e 88 (146)
.++.|.+-.
T Consensus 74 ~~v~f~~~~ 82 (141)
T cd08863 74 SRVHFLQAD 82 (141)
T ss_pred cEEEEEecC
Confidence 467788765
No 50
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.67 E-value=0.21 Score=38.94 Aligned_cols=115 Identities=9% Similarity=-0.048 Sum_probs=68.8
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec--CCcceeeEEEEEEe-eC-C
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD--GGNFKYAKHRIDEL-DK-D 78 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~--g~~~~~~kErl~~~-D~-~ 78 (146)
..+..+..+++|++++++++. |... .++|.++ ..++++++. +..-- |..+.-.+ ..+.+.+.=+..-. .. +
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~-D~~~-r~~Wd~~-~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~d 153 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLS-DFTK-RPLWDPH-FLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKD 153 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHh-Chhh-hchhHHh-hceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCC
Confidence 467788899999999999998 9999 9999986 788888764 22222 55554332 11212222111111 22 2
Q ss_pred CCee--EEEEEecCCCC---c--ceeE-EEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 79 NFRC--KYTVIEGDMLG---T--ILES-IVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 79 ~~~~--~y~i~eg~~~~---~--~~~~-y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
+..+ .-.-+.-+..| + .... ..|- .+.|.++++|.|+..+--+|
T Consensus 154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 3222 22222221111 0 1344 4444 88999888999999999888
No 51
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.58 E-value=0.14 Score=38.93 Aligned_cols=116 Identities=10% Similarity=0.023 Sum_probs=67.3
Q ss_pred EEEEEEEecCCHHHHH-HHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec-CCc---ceeeEEEEEEeeCC
Q 032152 5 RFEKEVSAAVAPSRMF-KAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD-GGN---FKYAKHRIDELDKD 78 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw-~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~-g~~---~~~~kErl~~~D~~ 78 (146)
-+..+..+++|+++++ .++- |... .++|.+. +.++++++. +...--++.+.... ++. -..+.-|....+..
T Consensus 50 ~~k~e~~i~~~~~~l~~~l~~-d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~ 126 (209)
T cd08905 50 VFRLEVVVDQPLDNLYSELVD-RMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGS 126 (209)
T ss_pred EEEEEEEecCCHHHHHHHHHh-chhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCC
Confidence 3567889999999999 6665 8888 8999985 888787754 21111123222221 111 12222232223333
Q ss_pred CCeeEEEEEecCCCC---c--ceeEEEEEEEEEEcCC--CceEEEEEEEEEe
Q 032152 79 NFRCKYTVIEGDMLG---T--ILESIVYDVKFEASGN--GGSICKVASEFHT 123 (146)
Q Consensus 79 ~~~~~y~i~eg~~~~---~--~~~~y~~t~~v~p~~~--g~s~v~w~~~y~~ 123 (146)
+..+.....+-+..| + ....+.+-+.++|.++ ++|.++|.+-.+|
T Consensus 127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~Dp 178 (209)
T cd08905 127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDL 178 (209)
T ss_pred cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecC
Confidence 322211112222211 0 1455677889999865 7899999999999
No 52
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.57 E-value=0.19 Score=38.12 Aligned_cols=117 Identities=12% Similarity=0.054 Sum_probs=68.2
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeec---CCcceeeE--EEEEEeeC
Q 032152 3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD---GGNFKYAK--HRIDELDK 77 (146)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~---g~~~~~~k--Erl~~~D~ 77 (146)
...+..+..|++|++++.+++. |.+. .|.|.|. ..+.+.++..+..-.+-.+.+.. -..-..+- -.++.+|
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl~-d~~~-~~~W~p~-~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~- 120 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALLN-EVEL-YKTWVPF-CIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLE- 120 (215)
T ss_pred EEEEEEEEEecCChhHeEEEEe-hhhh-Hhhhccc-ceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeec-
Confidence 3567788899999999999998 9987 9999997 44545554322111222222211 11101111 1122232
Q ss_pred CCCeeEEEE--EecC----------CCCcc-----eeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 78 DNFRCKYTV--IEGD----------MLGTI-----LESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 78 ~~~~~~y~i--~eg~----------~~~~~-----~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
++..+.... +..+ +++.+ ...+.+-+.++|.++|+|.+++.+..+|
T Consensus 121 ~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP 183 (215)
T cd08877 121 ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDP 183 (215)
T ss_pred cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCC
Confidence 333432221 1110 11111 4677888999999888999999988888
No 53
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.38 E-value=0.081 Score=38.45 Aligned_cols=70 Identities=23% Similarity=0.402 Sum_probs=42.1
Q ss_pred EEEEEEecCC--------HHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeC
Q 032152 6 FEKEVSAAVA--------PSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDK 77 (146)
Q Consensus 6 ~~~e~~i~ap--------a~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~ 77 (146)
++..+.||-| .++||+-+.....+ --.++|+ +.+|++++.+ +..-.|.++|+. ..++|++. +.+
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~-~~~~~R~v~fg~----~~v~E~v~-~~~ 73 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVPG-IDSCEVLSES-DTVLTREVTFGG----ATVRERVT-LYP 73 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH--GGGT-TT---EEEEEEE--SSEEEEEEEETT----EEEEEEEE-EET
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCccc-cCeEEEEecC-CCeEEEEEEECC----cEEEEEEE-EeC
Confidence 4555666554 56899988744444 5577885 8999998654 346789999933 38999976 444
Q ss_pred CCCeeEE
Q 032152 78 DNFRCKY 84 (146)
Q Consensus 78 ~~~~~~y 84 (146)
.. ++.|
T Consensus 74 ~~-~V~f 79 (149)
T PF08982_consen 74 PE-RVDF 79 (149)
T ss_dssp TT-EEEE
T ss_pred Cc-EEEE
Confidence 43 6666
No 54
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=96.30 E-value=0.33 Score=36.92 Aligned_cols=114 Identities=10% Similarity=0.024 Sum_probs=62.9
Q ss_pred EEEEEEEecCCHHHHH-HHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec-CCc--c-eeeEEEEEEeeCC
Q 032152 5 RFEKEVSAAVAPSRMF-KAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD-GGN--F-KYAKHRIDELDKD 78 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw-~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~-g~~--~-~~~kErl~~~D~~ 78 (146)
.+..+..+++|++++| +++. |... .++|.+. +.++++++. +..---++.++... +++ . ..+.-|-..-+.+
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~-D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~ 126 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVIL-QPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD 126 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHh-Chhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence 4677889999999998 5787 9999 9999985 888888754 21111112232221 122 1 2333333323333
Q ss_pred CCe-eEEEEEecCCCCcceeEE------EEEEEEEE--cCCCceEEEEEEEEEe
Q 032152 79 NFR-CKYTVIEGDMLGTILESI------VYDVKFEA--SGNGGSICKVASEFHT 123 (146)
Q Consensus 79 ~~~-~~y~i~eg~~~~~~~~~y------~~t~~v~p--~~~g~s~v~w~~~y~~ 123 (146)
+.. +..++ .-+..| +-+.| .+-+-+.| .++++|.++|.+-.+|
T Consensus 127 ~~i~~~~sv-~~~~~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp 178 (209)
T cd08906 127 RYVSAGIST-THSHKP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDL 178 (209)
T ss_pred cEEEEEEEE-ecCCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCC
Confidence 321 22222 222221 12222 12233444 4567899999999999
No 55
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.17 E-value=0.39 Score=36.54 Aligned_cols=133 Identities=8% Similarity=-0.032 Sum_probs=73.5
Q ss_pred EEEEEEEe-cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC--Ccc-eeeEEEEEEeeCCCC
Q 032152 5 RFEKEVSA-AVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG--GNF-KYAKHRIDELDKDNF 80 (146)
Q Consensus 5 ~~~~e~~i-~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g--~~~-~~~kErl~~~D~~~~ 80 (146)
.+..+..+ ++|++++++++. |... .+.|.|. +..+++++.-+.--.|..+.+..- ... ..+--|.. .+.++.
T Consensus 48 ~~k~~~~~~~~s~e~~~~~l~-D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~ 123 (222)
T cd08871 48 MIKVSAIFPDVPAETLYDVLH-DPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGE 123 (222)
T ss_pred EEEEEEEeCCCCHHHHHHHHH-Chhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCE
Confidence 35556666 699999999998 9887 8999996 666666654211123333333311 111 22222322 233332
Q ss_pred eeE-EEEEecCCCC---cc--eeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHHhhC
Q 032152 81 RCK-YTVIEGDMLG---TI--LESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHLLAN 141 (146)
Q Consensus 81 ~~~-y~i~eg~~~~---~~--~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~~~ 141 (146)
.+. ..-+.-+..+ .. ...+.+-+.++|.++++|.++|.+..++ ......+++.|.+.+.+-
T Consensus 124 ~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 124 YIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred EEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 221 1111211111 11 2345677889998788899999999888 333445555555555443
No 56
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=96.13 E-value=0.4 Score=36.34 Aligned_cols=115 Identities=6% Similarity=-0.004 Sum_probs=62.1
Q ss_pred EEEEEEecCCHHHHHHHhhhcccc-ccccccccceeeEEEEcC-CCCCCcEEEEEee-c-C--C-cceeeEEEE-EEeeC
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHN-FLPKLVPQAIKSVEILQG-DGGAGSIKITNFA-D-G--G-NFKYAKHRI-DELDK 77 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~-~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~-~-g--~-~~~~~kErl-~~~D~ 77 (146)
+..+..++++++++++.+. |..+ .-++|.+. +.++++++. |+...-++. ... + + . +-..+--|. ...++
T Consensus 48 ~k~e~~i~~s~~~~~~~l~-d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLK-PAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHHH-hccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence 6678899999999999997 7755 12899985 888888764 322222222 222 1 1 1 111222122 22233
Q ss_pred CCCeeEEEEEecCCCC---cceeE----EEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 78 DNFRCKYTVIEGDMLG---TILES----IVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 78 ~~~~~~y~i~eg~~~~---~~~~~----y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
....+.+..++-+..| +.+.. ..+-++..|.++++|.++|.+-.+|
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dp 177 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDL 177 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEecc
Confidence 3233333333332211 11222 2334444454567899999999999
No 57
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.02 E-value=0.45 Score=35.85 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=73.2
Q ss_pred EEEEEEecCCHHHHHH-HhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeecC-Cc---ceeeEEEEEEeeCCC
Q 032152 6 FEKEVSAAVAPSRMFK-AFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFADG-GN---FKYAKHRIDELDKDN 79 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~-~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~g-~~---~~~~kErl~~~D~~~ 79 (146)
+..+..+++||++++. ++. |.+. .++|.+. +..+++++. ++..--+......+. .+ -..+--|....++..
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~-d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~ 126 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVL-NVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENC 126 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHc-Cccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCe
Confidence 5667899999999986 555 8888 8999986 777777654 222111222221121 11 112222222223332
Q ss_pred CeeEEEEEecCCCC--c---ceeEEEEEEEEEEcCC--CceEEEEEEEEEe-------------chhhhhHHHHHHHHHh
Q 032152 80 FRCKYTVIEGDMLG--T---ILESIVYDVKFEASGN--GGSICKVASEFHT-------------KEKAMGLHKIVEAHLL 139 (146)
Q Consensus 80 ~~~~y~i~eg~~~~--~---~~~~y~~t~~v~p~~~--g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~ 139 (146)
..+...-++-+..| . ....+.+.+.++|.++ ++|.+.|.+..+| .......++.|.+++.
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIA 206 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHh
Confidence 22222223311111 0 1344567888999764 5799999999988 3444466677776664
No 58
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=95.85 E-value=0.55 Score=35.50 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=76.6
Q ss_pred EEEEEEEEe-cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCc-EEEEEeec---CCcceeeEEEEEEee-C
Q 032152 4 MRFEKEVSA-AVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGS-IKITNFAD---GGNFKYAKHRIDELD-K 77 (146)
Q Consensus 4 ~~~~~e~~i-~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gs-ir~~~~~~---g~~~~~~kErl~~~D-~ 77 (146)
..+..+.++ ++|++++++++. |... .++|.+. +.+.++++-++..|. |-.+.+.. -.+-..+--|....| +
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 126 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYW-DDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDD 126 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHc-Chhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCC
Confidence 456677788 679999999998 9988 8999985 666677655421121 22222221 111123333333334 2
Q ss_pred CCCeeEEEEEecCCCC----cceeEEEEEEEEEEc--CCCceEEEEEEEEEe-------------chhhhhHHHHHHHHH
Q 032152 78 DNFRCKYTVIEGDMLG----TILESIVYDVKFEAS--GNGGSICKVASEFHT-------------KEKAMGLHKIVEAHL 138 (146)
Q Consensus 78 ~~~~~~y~i~eg~~~~----~~~~~y~~t~~v~p~--~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l 138 (146)
....+...-+.-+..| -.+..|.+.+.+.|. ++++|.+.++.--+| ......+++.|.+.+
T Consensus 127 ~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 127 RSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENAL 206 (209)
T ss_pred CEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2222222222221111 137889999999998 667888888888777 344445556655544
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.71 E-value=0.63 Score=35.21 Aligned_cols=132 Identities=11% Similarity=0.016 Sum_probs=78.3
Q ss_pred EEEEEEEEe-cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCc-EEEEEeecC---CcceeeEEEEEEeeCC
Q 032152 4 MRFEKEVSA-AVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGS-IKITNFADG---GNFKYAKHRIDELDKD 78 (146)
Q Consensus 4 ~~~~~e~~i-~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gs-ir~~~~~~g---~~~~~~kErl~~~D~~ 78 (146)
..+..+.++ ++|++.+.+++. |... .++|.+. +.+.++++.+...++ +-.+.+..- .+-..+-.|....|++
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 121 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQL-DLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEE 121 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCC
Confidence 346666666 999999999998 9998 8999985 777788775322122 222322211 1112454555556766
Q ss_pred CCeeE--EEEEec-CCCC----cceeEEEEEEEEEEcC---CCceEEEEEEEEEe-------------chhhhhHHHHHH
Q 032152 79 NFRCK--YTVIEG-DMLG----TILESIVYDVKFEASG---NGGSICKVASEFHT-------------KEKAMGLHKIVE 135 (146)
Q Consensus 79 ~~~~~--y~i~eg-~~~~----~~~~~y~~t~~v~p~~---~g~s~v~w~~~y~~-------------~~~~~~~~k~~e 135 (146)
+..+. ..-++- ..++ -.+.+|.+.+.+.|.+ +++|.+.++.--+| .....++++.|.
T Consensus 122 ~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~ 201 (207)
T cd08911 122 NKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSYITSWVAMSGMPDFLERLR 201 (207)
T ss_pred CCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHHHHHHHHHhhccHHHHHHH
Confidence 54421 111221 1010 1267889999999973 46788877766666 344455556555
Q ss_pred HHH
Q 032152 136 AHL 138 (146)
Q Consensus 136 ~~l 138 (146)
+..
T Consensus 202 ~a~ 204 (207)
T cd08911 202 NAA 204 (207)
T ss_pred HHH
Confidence 544
No 60
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.49 E-value=0.63 Score=33.73 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=60.1
Q ss_pred EEEEEecCCHHHHHHHhhhcccccccccccc------ceeeEEEEcCCCCCCcEEEEE-eec-CCc--------ceeeEE
Q 032152 7 EKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQ------AIKSVEILQGDGGAGSIKITN-FAD-GGN--------FKYAKH 70 (146)
Q Consensus 7 ~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~------~v~s~~~~eGdg~~Gsir~~~-~~~-g~~--------~~~~kE 70 (146)
+.++++++|+++||+++. |..- +..-+.. .+.+++ .+|+| -+++.-. +.. ..| .....+
T Consensus 2 ~~~~~~~~~~~~v~~~~~-d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFT-DEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred eEEEEcCCCHHHHHHHHc-CHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 567899999999999998 7653 2222221 133333 22332 1111111 111 111 011122
Q ss_pred EEEEe---eCCCCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 71 RIDEL---DKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 71 rl~~~---D~~~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
|.+.. ++..++.+|++--.+. --+.++++.+.|.+ ++|.+.++.+...
T Consensus 77 ~~e~w~~~~~g~~~g~~~~~~~G~----P~~~~G~~~L~~~~-~gt~~~~~g~v~v 127 (159)
T PF10698_consen 77 RTETWTPLDDGRRTGTFTVSIPGA----PVSISGTMRLRPDG-GGTRLTVEGEVKV 127 (159)
T ss_pred EEEEEecCCCCeEEEEEEEEecCc----eEEEEEEEEEecCC-CCEEEEEEEEEEE
Confidence 33445 5677777777532222 23689999999954 5799999999887
No 61
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=94.21 E-value=0.67 Score=35.57 Aligned_cols=104 Identities=10% Similarity=0.088 Sum_probs=66.8
Q ss_pred EEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCeeEEEEEe
Q 032152 10 VSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFRCKYTVIE 88 (146)
Q Consensus 10 ~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~i~e 88 (146)
..+..+++++|++++ |.+. +..++| .-++..+...+.+-+.+-.++.+ ++. .+...-++ .+++..++.+ ..-+
T Consensus 74 rligysp~~my~vVS-~V~~-Y~~FVP-wC~kS~V~~~~P~~~~kA~LeVGFk~l-~E~y~S~V-t~~~p~l~kt-~~~d 147 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVS-NVSE-YHEFVP-WCKKSDVTSRRPSGPLKADLEVGFKPL-DERYTSNV-TCVKPHLTKT-VCAD 147 (227)
T ss_pred hhhCCCHHHHHHHHH-hHHH-hhcccc-ceeccceeecCCCCCceeeEEecCccc-chhheeee-EEecccceEE-eecc
Confidence 457899999999998 8888 888888 56666665443122333333332 111 02223333 3556655532 2335
Q ss_pred cCCCCcceeEEEEEEEEEEcC--CCceEEEEEEEEEe
Q 032152 89 GDMLGTILESIVYDVKFEASG--NGGSICKVASEFHT 123 (146)
Q Consensus 89 g~~~~~~~~~y~~t~~v~p~~--~g~s~v~w~~~y~~ 123 (146)
|.+ +......|+|.|.. .+.|.+...++|+-
T Consensus 148 ~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF 180 (227)
T KOG3177|consen 148 GRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEF 180 (227)
T ss_pred ccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEe
Confidence 543 56677889999988 47899999999998
No 62
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.08 E-value=1.8 Score=32.09 Aligned_cols=134 Identities=13% Similarity=-0.018 Sum_probs=77.8
Q ss_pred EEEEEEEEecCCHHHHH-HHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC-Cc---ceeeEEEEEEeeCC
Q 032152 4 MRFEKEVSAAVAPSRMF-KAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG-GN---FKYAKHRIDELDKD 78 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw-~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g-~~---~~~~kErl~~~D~~ 78 (146)
..+..+..++++++++. +++. |... .++|.+. +.++++++--..-..|..+....- ++ -..+--|-...++.
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~-d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~ 121 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMD-DLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVD 121 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHh-cccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCC
Confidence 35667788999999855 6776 9888 8999985 777787654211134444433311 12 11222222222222
Q ss_pred -CCeeEEEEEecCCCC---c--ceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHHh
Q 032152 79 -NFRCKYTVIEGDMLG---T--ILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHLL 139 (146)
Q Consensus 79 -~~~~~y~i~eg~~~~---~--~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~ 139 (146)
...+...-++.+..+ . ....+.+-+.++|.++|.|.++|....++ ......+++.+-+.|.
T Consensus 122 ~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 122 GSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred CcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHH
Confidence 223333223222111 1 13467788999999888899999999888 4444566666655554
Q ss_pred h
Q 032152 140 A 140 (146)
Q Consensus 140 ~ 140 (146)
.
T Consensus 202 ~ 202 (206)
T smart00234 202 K 202 (206)
T ss_pred H
Confidence 3
No 63
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=93.98 E-value=2.3 Score=33.02 Aligned_cols=131 Identities=8% Similarity=0.034 Sum_probs=74.4
Q ss_pred EEEEEEEec-CCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEee---cCCcceeeE-EEEEEeeCC
Q 032152 5 RFEKEVSAA-VAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFA---DGGNFKYAK-HRIDELDKD 78 (146)
Q Consensus 5 ~~~~e~~i~-apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~---~g~~~~~~k-Erl~~~D~~ 78 (146)
.+..+.+++ ++++++.+++. |... .++|... +.+.++++- +.. -.|-...+. +-.+-..+- -++...|+.
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~-D~~~-r~~Wd~~-~~~~~vie~l~~~-~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~ 128 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFF-DPDV-RMDWETT-LENFHVVETLSQD-TLIFHQTHKRVWPAAQRDALFVSHIRKIPAL 128 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHh-Chhh-HHHHHhh-hheeEEEEecCCC-CEEEEEEccCCCCCCCcEEEEEEEEEecCcc
Confidence 366777888 99999999998 9998 8999985 888887754 221 111122111 110011111 111222221
Q ss_pred C--------CeeEEEEEecCCCCcceeEEEEE-----------------EEEEEcCCCceEEEEEEEEEe----------
Q 032152 79 N--------FRCKYTVIEGDMLGTILESIVYD-----------------VKFEASGNGGSICKVASEFHT---------- 123 (146)
Q Consensus 79 ~--------~~~~y~i~eg~~~~~~~~~y~~t-----------------~~v~p~~~g~s~v~w~~~y~~---------- 123 (146)
. -.+..++.-...++ .=.-.++. +.++| ++++|.+++.+-.+|
T Consensus 129 ~~~~~~~~~vii~~Sv~h~~~P~-~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~iP~wvvn 206 (235)
T cd08872 129 EEPNAHDTWIVCNFSVDHDSAPL-NNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWAPASVLR 206 (235)
T ss_pred ccccCCCeEEEEEecccCccCCC-CCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCccHHHHH
Confidence 1 11233322111111 11122222 23445 467899999999999
Q ss_pred ---chhhhhHHHHHHHHHhhC
Q 032152 124 ---KEKAMGLHKIVEAHLLAN 141 (146)
Q Consensus 124 ---~~~~~~~~k~~e~~l~~~ 141 (146)
+..+.++++.|.+|++.+
T Consensus 207 ~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 207 AVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHhhchHHHHHHHHHHHHh
Confidence 677889999999999876
No 64
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=92.93 E-value=3 Score=31.23 Aligned_cols=113 Identities=10% Similarity=0.022 Sum_probs=66.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec--CCcc-eeeEEEEEEeeCCCC
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD--GGNF-KYAKHRIDELDKDNF 80 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~--g~~~-~~~kErl~~~D~~~~ 80 (146)
-+..+.+++++++++++.+. |.. +.|.+. +.++++++. +... .|-...+.. ..+. ..+--|....+.++.
T Consensus 45 ~~K~~~~v~a~~~~v~~~l~-d~r---~~Wd~~-~~~~~vie~id~~~-~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g 118 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRIL-RER---HLWDDD-LLQWKVVETLDEDT-EVYQYVTNSMAPHPTRDYVVLRTWRTDLPKG 118 (197)
T ss_pred EEEEEEEeCCCHHHHHHHHH-HHH---hccchh-hheEEEEEEecCCc-EEEEEEeeCCCCCCCceEEEEEEEEecCCCC
Confidence 35788899999999999887 743 699986 777787754 2211 122222221 1122 233333333344433
Q ss_pred e--eEEEEEec--CCCCcc--eeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 81 R--CKYTVIEG--DMLGTI--LESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 81 ~--~~y~i~eg--~~~~~~--~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
. +...-++- ..++.. ...+.+-+.++|.++|+|.+++.+..+|
T Consensus 119 ~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp 167 (197)
T cd08869 119 ACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDL 167 (197)
T ss_pred cEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECC
Confidence 2 22222321 111111 3456788899998888999999999999
No 65
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=92.66 E-value=3.3 Score=31.02 Aligned_cols=116 Identities=8% Similarity=-0.018 Sum_probs=62.1
Q ss_pred EEEEEEEecCCHHHHHHHhhhc--cccccccccccceeeEEEEcCCCCCCcEEEEEee-c-CC--cce-ee-EEEEEEee
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLE--AHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-D-GG--NFK-YA-KHRIDELD 76 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d--~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~-g~--~~~-~~-kErl~~~D 76 (146)
.+..+..|+++++++.+.+. | ... .++|-+. +.++++++.-+..=.+....+. . .+ ..+ .+ .+....++
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~-d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~ 123 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVII-PPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYE 123 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeC
Confidence 36778899999999999998 7 566 7899985 7788887653211112222221 1 11 111 11 11112233
Q ss_pred CCCCeeEEEEEecCCCC---cc--eeEEEEEEEEEEcC--CCceEEEEEEEEEe
Q 032152 77 KDNFRCKYTVIEGDMLG---TI--LESIVYDVKFEASG--NGGSICKVASEFHT 123 (146)
Q Consensus 77 ~~~~~~~y~i~eg~~~~---~~--~~~y~~t~~v~p~~--~g~s~v~w~~~y~~ 123 (146)
+....+...-++=+..+ +. ...+.+-+-+.|.+ +++|.++|.+-.+|
T Consensus 124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~Dp 177 (206)
T cd08867 124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDL 177 (206)
T ss_pred CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEecc
Confidence 32222222233222111 11 12234455667754 35799999999999
No 66
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=92.58 E-value=3.6 Score=31.16 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=66.1
Q ss_pred EEEEEEEEec-CCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC---Ccceee-EEEEEEeeCC
Q 032152 4 MRFEKEVSAA-VAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG---GNFKYA-KHRIDELDKD 78 (146)
Q Consensus 4 ~~~~~e~~i~-apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g---~~~~~~-kErl~~~D~~ 78 (146)
..+..+.+++ ++++.+.+++. |... .++|.+. +.++.-.+.++ -.|-.+.+..- .+-..+ .-+...+|.+
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~-~~~~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~ 123 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYM-DLEY-RKQWDQY-VKELYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVE 123 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHHH-HHhheeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCC
Confidence 3566677888 79999999998 9998 8999986 44432122222 12333333211 111122 1122234544
Q ss_pred CCeeEE---EEEecCCCC-----cceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 79 NFRCKY---TVIEGDMLG-----TILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 79 ~~~~~y---~i~eg~~~~-----~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
+..+.. ..++-+..| -.+..|.+.+.++|.++++|.+.+..--+|
T Consensus 124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DP 176 (207)
T cd08910 124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNP 176 (207)
T ss_pred CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCC
Confidence 432211 111111111 126789999999998778899999988888
No 67
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=89.25 E-value=8.1 Score=29.42 Aligned_cols=115 Identities=11% Similarity=0.118 Sum_probs=66.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEE-EeecCCcc-eeeEEEEEEeeCCCC
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKIT-NFADGGNF-KYAKHRIDELDKDNF 80 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~-~~~~g~~~-~~~kErl~~~D~~~~ 80 (146)
..+..+.+++++++++...+- |. .+.|.+. +.+.++++. +...--+... ...-..+. ..+.-|.-..|.++.
T Consensus 52 ~~~r~~~~i~a~~~~vl~~ll-d~---~~~Wd~~-~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLL-KE---QHLWDVD-LLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKG 126 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-hh---HHHHHHH-hhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence 457888999999999999997 66 4689986 555566553 2211111111 11111222 233333433344444
Q ss_pred eeEEEEE--ecCCCC---cceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 81 RCKYTVI--EGDMLG---TILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 81 ~~~y~i~--eg~~~~---~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.+.-... +-+..| -....+.+.+.++|.++|+|.++..+..+|
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DP 174 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDL 174 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCC
Confidence 3322221 111111 024556788999999889999999999999
No 68
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=84.78 E-value=13 Score=27.21 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=81.1
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCC--cc---eeeEEEEEEeeCC
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGG--NF---KYAKHRIDELDKD 78 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~--~~---~~~kErl~~~D~~ 78 (146)
..+..+..++++++++...+. +-.. .|-+. +.++++++--..-..|..+.+.... +. ..+--|....+.+
T Consensus 46 ~~~k~~~~v~~~~~~~~~~~~-~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~ 120 (206)
T PF01852_consen 46 KMFKAEGVVPASPEQVVEDLL-DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDED 120 (206)
T ss_dssp EEEEEEEEESSCHHHHHHHHH-CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTT
T ss_pred eEEEEEEEEcCChHHHHHHHH-hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEecc
Confidence 456778899999998888887 4443 88875 7788877642111455555544322 31 1222222222233
Q ss_pred C-CeeEEEEEecCCCC----c--ceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHH
Q 032152 79 N-FRCKYTVIEGDMLG----T--ILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHL 138 (146)
Q Consensus 79 ~-~~~~y~i~eg~~~~----~--~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l 138 (146)
+ ..+..+=++.+..+ . ....+.+.+.++|.++|.|.+.+...-++ ......+++.+-+.|
T Consensus 121 ~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~ 200 (206)
T PF01852_consen 121 GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKAL 200 (206)
T ss_dssp SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3 33444334333222 1 13467788899999988899999999988 444556677777777
Q ss_pred hhCC
Q 032152 139 LANP 142 (146)
Q Consensus 139 ~~~~ 142 (146)
..+.
T Consensus 201 ~~~~ 204 (206)
T PF01852_consen 201 KKQK 204 (206)
T ss_dssp HHCC
T ss_pred HHhc
Confidence 6665
No 69
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=62.70 E-value=65 Score=24.40 Aligned_cols=114 Identities=10% Similarity=-0.030 Sum_probs=64.5
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec--CC---cceeeEEEEE-EeeC
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD--GG---NFKYAKHRID-ELDK 77 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~--g~---~~~~~kErl~-~~D~ 77 (146)
-+..|..++++++++|+.+. +... ..+|-+ .+..++++|- |... .|-...+.. ++ +...+-=|.. .++.
T Consensus 47 l~k~egvi~~~~e~v~~~l~-~~e~-r~~Wd~-~~~~~~iie~Id~~T-~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~ 122 (204)
T cd08904 47 LYRVEGIIPESPAKLIQFMY-QPEH-RIKWDK-SLQVYKMLQRIDSDT-FICHTITQSFAMGSISPRDFVDLVHIKRYEG 122 (204)
T ss_pred EEEEEEEecCCHHHHHHHHh-ccch-hhhhcc-cccceeeEEEeCCCc-EEEEEecccccCCcccCceEEEEEEEEEeCC
Confidence 35678899999999999998 8776 789998 5888888763 2111 222212221 11 1112221111 1244
Q ss_pred CCCeeEEEEEecCCCCcce------eEEEEEEEEEEcCCC--ceEEEEEEEEEe
Q 032152 78 DNFRCKYTVIEGDMLGTIL------ESIVYDVKFEASGNG--GSICKVASEFHT 123 (146)
Q Consensus 78 ~~~~~~y~i~eg~~~~~~~------~~y~~t~~v~p~~~g--~s~v~w~~~y~~ 123 (146)
....+....++=+-.| |- .++.+-+-+.|.+++ +|.+.|-+..++
T Consensus 123 ~~~ii~~~sv~Hp~~P-p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~Dl 175 (204)
T cd08904 123 NMNIVSSVSVEYPQCP-PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPEL 175 (204)
T ss_pred CEEEEEEEecccCCCC-CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCC
Confidence 3333333334433221 12 233455677887653 799999999888
No 70
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=56.95 E-value=61 Score=22.26 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=61.4
Q ss_pred EEEEecCCHHHHHHHhhhccccccccccc---cceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152 8 KEVSAAVAPSRMFKAFFLEAHNFLPKLVP---QAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY 84 (146)
Q Consensus 8 ~e~~i~apa~~vw~~~~~d~~~~~p~~~P---~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y 84 (146)
.+.++++||+.+|+.+. +.. +.++-- ..+..-++ + |.--.-.+..+. ..+=+|+.+ ..++.|.+
T Consensus 3 I~~~l~v~a~~ff~~l~-~s~--~~DI~~~tgk~~~~~~L-~-----G~~Y~K~~~~~~---~~~v~It~~-~~~~~Y~~ 69 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLI-DSL--LYDIKQATGKKLPVKQL-K-----GFSYQKKFKNKR---EAKVKITEY-EPNKRYAA 69 (120)
T ss_pred EEEEecCCHHHHHHHHH-HHH--HHHHHHHcCCCCChhhc-C-----CcEEEEEcCCCC---EEEEEEEEE-cCCCEEEE
Confidence 35679999999999987 433 222221 11100011 2 222222223332 334356666 44557766
Q ss_pred EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEechhhhhHHHHH
Q 032152 85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIV 134 (146)
Q Consensus 85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~~~~~~~~~k~~ 134 (146)
.+... ...+..+.++.|.++|.|.|+.+=++++..+...+.-.|
T Consensus 70 ~~~s~------~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~~~~~~n~~l 113 (120)
T PF11687_consen 70 TFSSS------RGTFTISYEIEPLDDGSIEVTYEEEYESKGFFQKLNNKL 113 (120)
T ss_pred EEEec------CCCEEEEEEEEECCCCcEEEEEEEEEccCCHHHHHHHHH
Confidence 66432 346788899999988889999888888754444443333
No 71
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=49.25 E-value=96 Score=22.20 Aligned_cols=99 Identities=19% Similarity=0.291 Sum_probs=52.1
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC--CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD--GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC 82 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd--g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~ 82 (146)
.++.++..+-+.+.+-.+++ |+.-++|++.|. ++++. .+++ .+-|. | ++-.-.++=++ -+-..+=+|
T Consensus 2 ~~~~~i~t~H~~e~v~~ILS-DP~F~lp~l~p~-ik~v~-~~~~sF~~~g~-----~--~~~~~~~~G~v-y~s~~~ItY 70 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILS-DPEFVLPRLFPP-IKSVK-VEENSFRAEGK-----F--GGFPFEMKGNV-YVSSNEITY 70 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT--HHHHHHHHSTT-EEEEE--STTEEEEEEE-----E--TTEEEEEEEEE-EEETTEEEE
T ss_pred eEEEEeccCCChHheEEEec-CCccEecccCCc-eEEEE-ecCCEEEEEEE-----E--eeEEEEEEEEE-EEccceEEE
Confidence 46778888999999999998 999999999995 89988 4443 11121 1 11001111121 122233355
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.+.+..|+.. . .+.+.+... + ..++...+|+-
T Consensus 71 vf~~~~g~~~----g--~GkL~i~~~-~--~~i~l~~eyeg 102 (136)
T PF11485_consen 71 VFNLAGGGPN----G--NGKLTIQLE-N--GKIKLIFEYEG 102 (136)
T ss_dssp EEE----ETT----E--EEEEEEEEE-T--TEEEEEEEES-
T ss_pred EEEeeccCCC----C--cEEEEEEec-C--CEEEEEEEccc
Confidence 5566665433 2 345555443 2 27778888988
No 72
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=45.19 E-value=1.1e+02 Score=21.90 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=60.3
Q ss_pred ccccceeeEEEEcC----CCCCCcEEEEEeecCC-----------cceeeEEEEEEeeCCCCeeEEEEEecCCCCcceeE
Q 032152 34 LVPQAIKSVEILQG----DGGAGSIKITNFADGG-----------NFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILES 98 (146)
Q Consensus 34 ~~P~~v~s~~~~eG----dg~~Gsir~~~~~~g~-----------~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~ 98 (146)
..|+ |.++.+++. +|..=+.|.+...... ...++.|+. .+|+.+++++-.-..=..- .+-.
T Consensus 15 ~~~h-Vl~~Dvl~r~vd~~g~l~t~Rl~~~~~~~P~w~~kl~g~~~~~~~~E~S-~vD~~~k~l~~~t~Nls~~--~~~~ 90 (157)
T PF04707_consen 15 YSPH-VLSVDVLDREVDPDGKLHTKRLITKKNNLPRWLKKLIGVDSECYIIEES-IVDPKNKTLTTKTRNLSFS--SFLS 90 (157)
T ss_pred CCCc-eeEEEEEEEEEcCCCcEEEeeeeeeecCchHHHHHHhCcCceEEEEEEE-EEECCCCEEEEEEEEcccC--ceeE
Confidence 3454 777777653 3445555666643321 235777884 5999999986665443322 2444
Q ss_pred EEEEEEEEEcCC--CceEEEEEEEEEechhhhhHHHHHHHHHh
Q 032152 99 IVYDVKFEASGN--GGSICKVASEFHTKEKAMGLHKIVEAHLL 139 (146)
Q Consensus 99 y~~t~~v~p~~~--g~s~v~w~~~y~~~~~~~~~~k~~e~~l~ 139 (146)
..=+....|.++ +.|.++=.+.+........+-..||++++
T Consensus 91 v~E~~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~ 133 (157)
T PF04707_consen 91 VEETCVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSV 133 (157)
T ss_pred EEEEEEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHH
Confidence 455666677766 56777777777653334555555555544
No 73
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=40.41 E-value=2.2e+02 Score=25.95 Aligned_cols=72 Identities=11% Similarity=0.228 Sum_probs=35.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccc--cccceeeEEEEcCC-----CCCCcEEEEEeecCCcceeeEEEEEEeeC
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKL--VPQAIKSVEILQGD-----GGAGSIKITNFADGGNFKYAKHRIDELDK 77 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~--~P~~v~s~~~~eGd-----g~~Gsir~~~~~~g~~~~~~kErl~~~D~ 77 (146)
.+-...-+.++|||-=+++. + +.++..+ |-+.|..+.++.+. +--|.||.|.+.++ .+.|. .-.
T Consensus 148 ~l~e~~~vTgsaDKtIklWk-~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge----~l~~~---~gh 218 (745)
T KOG0301|consen 148 SLPENTYVTGSADKTIKLWK-G-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE----VLLEM---HGH 218 (745)
T ss_pred ecCCCcEEeccCcceeeecc-C-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCc----eeeee---ecc
Confidence 33344456677776555554 2 2212111 22335555444331 23488999988332 34333 345
Q ss_pred CCCeeEEE
Q 032152 78 DNFRCKYT 85 (146)
Q Consensus 78 ~~~~~~y~ 85 (146)
.+..|+++
T Consensus 219 tn~vYsis 226 (745)
T KOG0301|consen 219 TNFVYSIS 226 (745)
T ss_pred ceEEEEEE
Confidence 56565555
No 74
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=36.98 E-value=76 Score=25.06 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=37.6
Q ss_pred ecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe---chhhhhHHHHHHHHH
Q 032152 88 EGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT---KEKAMGLHKIVEAHL 138 (146)
Q Consensus 88 eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---~~~~~~~~k~~e~~l 138 (146)
+-+++. -..+++|++-++.++=.+.++|...|.. .+|...+++.++..-
T Consensus 85 nQPvF~--aNyikGtV~pvpgGg~~g~as~Kl~F~~GG~ieFgq~~l~~~s~a~ 136 (261)
T KOG3294|consen 85 NQPVFG--ANYIKGTVQPVPGGGWEGEASFKLTFNEGGCIEFGQLLLQAASRAS 136 (261)
T ss_pred cCcccc--cceeeeeEeecCCCCccceeEEEEEecCCCchhHHHHHHHHHHHHH
Confidence 444442 4567889988887654689999999998 899999998888754
No 75
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.45 E-value=2.1e+02 Score=23.23 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=57.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCCCC-ee
Q 032152 5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKDNF-RC 82 (146)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~-~~ 82 (146)
.+..+-++++++++++++|- |... +..|.-. .-+ ++.+ | |..- +-+|. +.-++.++.+.++ .+
T Consensus 174 di~l~~tfn~~~~eLy~~fl-d~~r-v~~wt~S---~a~-l~~~~~--g~f~---lf~Gn----Vtg~~~~~e~~K~Iv~ 238 (301)
T KOG2936|consen 174 DISLSATFNCRVDELYEIFL-DPER-VKAWTRS---PAE-LEADPG--GKFS---LFDGN----VTGEFLELEKNKKIVM 238 (301)
T ss_pred cceehhhcCCCHHHHHHHHh-cHHH-HHHhcCC---hhh-cccCCC--CceE---Eeccc----ceeeeeeecCCCeEEE
Confidence 45667789999999999998 9888 6566531 222 3343 3 3333 34442 3334444544443 44
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCC-CceEEEEEEEEEe
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGN-GGSICKVASEFHT 123 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~-g~s~v~w~~~y~~ 123 (146)
.|++-+ .| ..+.|||.++.... |.|.+.....=-|
T Consensus 239 kWrl~~---Wp---~~~~atI~~~f~~~~~~t~l~~~~kgVP 274 (301)
T KOG2936|consen 239 KWRLKS---WP---DGHDATITLTFYESQGETKLQVKQKGVP 274 (301)
T ss_pred EEeccc---CC---CCccceEEEEEecCCCceEEEEEecCCC
Confidence 788732 22 24567777776443 5688777766555
No 76
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=33.33 E-value=2.2e+02 Score=21.68 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=62.6
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEc-CCC--CCCcEEEEEee-cCCcceeeEEEEEEeeCCC
Q 032152 4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQ-GDG--GAGSIKITNFA-DGGNFKYAKHRIDELDKDN 79 (146)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~e-Gdg--~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~ 79 (146)
..+..+++|+++++.|-..+- + . .+.|-..+.++ ++++ -|+ .++--+ ++.. +-.+-..+.-|--..|.+.
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl-~--~-R~~WD~~~~~~-~~ie~ld~~tdi~~y~-~~~~~P~~~RD~v~~R~w~~~~~~ 125 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVL-R--E-RHLWDEDFLQW-KVVETLDKQTEVYQYV-LNCMAPHPSRDFVVLRSWRTDLPK 125 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-h--h-HhhHHhhccee-EEEEEeCCCcEEEEEE-eecCCCCCCCEEEEEEEEEEeCCC
Confidence 456778999999999988776 5 3 56888875444 4443 342 111111 1111 1111123444433334433
Q ss_pred Ce--eEEEEEecC-CCCcc---eeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152 80 FR--CKYTVIEGD-MLGTI---LESIVYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 80 ~~--~~y~i~eg~-~~~~~---~~~y~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.. +.+.-++.. .++.+ ...+.+-+-++|.++|+|.+++.+..++
T Consensus 126 G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDp 175 (205)
T cd08909 126 GACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDL 175 (205)
T ss_pred CcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecC
Confidence 32 233323332 11111 2345566788999888999999999999
No 77
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=33.26 E-value=43 Score=22.18 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEEEE
Q 032152 51 AGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVI 87 (146)
Q Consensus 51 ~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~ 87 (146)
.|-.+.+++.+|. |+|.+|.+++.+ |++=
T Consensus 25 ~g~~kEf~lpsGk-------R~D~id~~~k~I-yELK 53 (89)
T PF15650_consen 25 GGREKEFRLPSGK-------RPDFIDFETKII-YELK 53 (89)
T ss_pred ccceeeeecCCCC-------cCccccCCcceE-EEec
Confidence 4667778888774 889999999665 7773
No 78
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=32.93 E-value=70 Score=24.06 Aligned_cols=73 Identities=23% Similarity=0.435 Sum_probs=39.0
Q ss_pred ecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEEEEecCC
Q 032152 12 AAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDM 91 (146)
Q Consensus 12 i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~ 91 (146)
++.+..|+|. |.++ .+.--|..| .+.|.. +|.. ....+++..+..=...=+-|-.+|+....+.|++-|-++
T Consensus 3 ~~i~v~K~W~----d~~n-~~~~RP~sI-~v~L~~-ng~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 3 VNLSGTKIWD----DYDD-KFKKRPAKI-SVQLLA-NGEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEEC----CCCC-CCCCCCCEE-EEEEEe-CCee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecC
Confidence 4445556665 3223 234455433 356553 2211 344555554432122224556677788899999988765
Q ss_pred C
Q 032152 92 L 92 (146)
Q Consensus 92 ~ 92 (146)
.
T Consensus 75 ~ 75 (187)
T cd00222 75 P 75 (187)
T ss_pred C
Confidence 4
No 79
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.88 E-value=2.4e+02 Score=23.28 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=40.6
Q ss_pred cccccceeeEEEEcCCCCCCcEEEEEeecCC-------------cceeeEEEEEEeeCCCCeeEEEEEecCCCCcceeEE
Q 032152 33 KLVPQAIKSVEILQGDGGAGSIKITNFADGG-------------NFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESI 99 (146)
Q Consensus 33 ~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~-------------~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~y 99 (146)
.|.|.+-.+.+++.-.-+-| ||.+++.... ....=.|++-++|+-+... |++- -+.
T Consensus 230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V-Wrv~---------wNm 298 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV-WRVR---------WNM 298 (361)
T ss_pred eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce-EEEE---------Eee
Confidence 56676555566553111124 8888876321 1122334555555555332 2321 122
Q ss_pred EEEEEEEEcCCCceEEEEEEEEEe
Q 032152 100 VYDVKFEASGNGGSICKVASEFHT 123 (146)
Q Consensus 100 ~~t~~v~p~~~g~s~v~w~~~y~~ 123 (146)
.+|+- ...|++||+--|.+.|..
T Consensus 299 tGtiL-sStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 299 TGTIL-SSTGDDGCVRLWKANYNN 321 (361)
T ss_pred eeeEE-eecCCCceeeehhhhhhh
Confidence 23332 345667899999998866
No 80
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=30.92 E-value=2.4e+02 Score=21.52 Aligned_cols=113 Identities=6% Similarity=0.023 Sum_probs=61.9
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC--CCCCCcE-EEEEeecCCc---c-eeeE-EEEEEeeC
Q 032152 6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG--DGGAGSI-KITNFADGGN---F-KYAK-HRIDELDK 77 (146)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG--dg~~Gsi-r~~~~~~g~~---~-~~~k-Erl~~~D~ 77 (146)
+..|..|+..++++|+.+. +... ..+|=|. +++++++|. ++ =+| |.++....+. + ..+. -+.....+
T Consensus 49 ~R~Egvv~~~~~ev~d~v~-~~~~-r~~Wd~~-v~~~~Iie~Id~d--t~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d 123 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHIR-PGPY-RLDWDSL-MTSMDIIEEFEEN--CCVMRYTTAGQLLNIISPREFVDFSYTTQYED 123 (202)
T ss_pred EEEEEEecCCHHHHHHHHh-cccc-hhcccch-hhheeHhhhhcCC--cEEEEEEcccCCcCccCccceEEEEEEEEeCC
Confidence 4567788899999999998 7665 6799984 999999874 22 123 3444443321 1 1111 11111122
Q ss_pred CCCeeEEEEEecCCCCccee--EEEEEEEEEEcCCC--ceEEEEEEEEEe
Q 032152 78 DNFRCKYTVIEGDMLGTILE--SIVYDVKFEASGNG--GSICKVASEFHT 123 (146)
Q Consensus 78 ~~~~~~y~i~eg~~~~~~~~--~y~~t~~v~p~~~g--~s~v~w~~~y~~ 123 (146)
.-.+..-++.-...++.-+. ++-+-+-+.|.+++ .|.+.|-+..++
T Consensus 124 ~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DL 173 (202)
T cd08902 124 GLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDL 173 (202)
T ss_pred CeEEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecC
Confidence 22222222221122211122 22344667887665 688999999887
No 81
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=24.76 E-value=3.4e+02 Score=21.13 Aligned_cols=37 Identities=8% Similarity=0.218 Sum_probs=30.0
Q ss_pred EEEEEecCCHHHHHHHhhhccccccccccccceeeEEEE
Q 032152 7 EKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEIL 45 (146)
Q Consensus 7 ~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~ 45 (146)
..+-.+...+.++=+++. |... +..++|.++.+.+++
T Consensus 63 R~~glV~m~~~~lVe~lm-D~~k-W~~~Fp~iv~~a~tl 99 (229)
T cd08875 63 RACGLVMMNAIKLVEILM-DVNK-WSELFPGIVSKAKTL 99 (229)
T ss_pred eeeEEEecCHHHHHHHHh-Chhh-hhhhhhhhcceeeEE
Confidence 344567889999999998 9999 778888888887764
No 82
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=24.40 E-value=1.9e+02 Score=18.11 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=34.0
Q ss_pred cccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEEEEecCCCCcceeEE
Q 032152 31 LPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESI 99 (146)
Q Consensus 31 ~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~y 99 (146)
+.-|.|. -++|+++-.+ +....+.-..+| .+.=.+. -+ +...|.|++-++....+|+..+
T Consensus 12 F~vwAP~-A~~V~l~l~~---~~~~~m~~~~~G---~W~~~v~-~~-~g~~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 12 FRLWAPD-AKRVTLRLDD---GEEIPMQRDGDG---WFEAEVP-GA-AGTRYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred EEEeCCC-CCEEEEEecC---CCcccCccCCCc---EEEEEeC-CC-CCCeEEEEECCCcCCCCCcccc
Confidence 5568886 7888876322 122222222233 3333333 23 7788999998776566777654
No 83
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=23.49 E-value=1.9e+02 Score=17.93 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=7.6
Q ss_pred eEEEEEEEEEEc
Q 032152 97 ESIVYDVKFEAS 108 (146)
Q Consensus 97 ~~y~~t~~v~p~ 108 (146)
..|.-++.+...
T Consensus 65 ~~y~l~v~a~D~ 76 (93)
T PF00028_consen 65 SSYQLTVRATDS 76 (93)
T ss_dssp SEEEEEEEEEET
T ss_pred CEEEEEEEEEEC
Confidence 556666666665
No 84
>PRK14681 hypothetical protein; Provisional
Probab=23.30 E-value=2.6e+02 Score=20.47 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=38.1
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe------------chhhhhHHHHHHHHHhhCC
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT------------KEKAMGLHKIVEAHLLANP 142 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~------------~~~~~~~~k~~e~~l~~~~ 142 (146)
.|+|++-+ +..-.++|.++...+++++|-..+.+-. ......+.++.+.||..|+
T Consensus 61 Gy~IL~rN-----~R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~~g~p~eaVt~~Kqrrl~raA~~yL~~~~ 127 (158)
T PRK14681 61 GWTTLSRN-----WHCRYGELDIVALNPEYTIVFVEVKTRRSMHYGYPQEAVTAAKQHNLRKAACDWLLERR 127 (158)
T ss_pred CCEEEEEE-----EeCCCCcEEEEEEcCCceEEEEEEEeccCCCCCChHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 46777654 4445678888887544577766666644 3455678888999998876
No 85
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=21.43 E-value=1.1e+02 Score=21.84 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.1
Q ss_pred chhhhhHHHHHHHHHhhCCCCC
Q 032152 124 KEKAMGLHKIVEAHLLANPDLY 145 (146)
Q Consensus 124 ~~~~~~~~k~~e~~l~~~~~~~ 145 (146)
.+.+..+.+.+|+.+.++|+.|
T Consensus 163 ~~~~~~~~~~lE~~i~~~P~qw 184 (192)
T cd07984 163 EEDTQRLNDALEAAIREHPEQW 184 (192)
T ss_pred HHHHHHHHHHHHHHHHhCchhh
Confidence 5778899999999999999864
No 86
>PRK14688 hypothetical protein; Provisional
Probab=20.94 E-value=2.7e+02 Score=19.26 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=35.6
Q ss_pred EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe------------chhhhhHHHHHHHHHhhCC
Q 032152 83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT------------KEKAMGLHKIVEAHLLANP 142 (146)
Q Consensus 83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~------------~~~~~~~~k~~e~~l~~~~ 142 (146)
.|++++-+ +..-.++|.++... |+++|-..+.+-. ......+.++.+.||..|+
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lVFVEVK~R~~~~~g~~~eaV~~~K~~ri~~aA~~yL~~~~ 89 (121)
T PRK14688 24 GYSIIQTN-----CRLPEGEIDIVGQD-GEYLVFIEVRTKRRLGYGLPAESVTPRKKAHLMASAESYIQKHR 89 (121)
T ss_pred CCEEEEEE-----eeCCCCcEeEEEee-CCEEEEEEEEecCCCCCCChHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 46666654 44446778887764 4566666666533 3455678888999998886
No 87
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=20.09 E-value=85 Score=23.51 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=13.8
Q ss_pred EEEEEEEEEcCC---CceEEEEEE
Q 032152 99 IVYDVKFEASGN---GGSICKVAS 119 (146)
Q Consensus 99 y~~t~~v~p~~~---g~s~v~w~~ 119 (146)
|.+.|+|.++++ |+|.+.|-.
T Consensus 155 ~~~~~~l~~D~~L~~G~c~vet~~ 178 (199)
T PRK06032 155 FEGRLVVLADPDMAPGDCRLEWAD 178 (199)
T ss_pred cCccEEEeeCCCCCCCCeEEEeCC
Confidence 444566665544 789999953
Done!