Query 032153
Match_columns 146
No_of_seqs 27 out of 29
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 10:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00046 photosystem I reactio 100.0 1.5E-79 3.3E-84 475.7 8.2 141 2-145 1-141 (141)
2 TIGR03059 psaOeuk photosystem 100.0 1.8E-57 4E-62 327.9 6.9 80 65-144 1-82 (82)
3 PLN00074 photosystem II D2 pro 77.3 0.74 1.6E-05 41.2 -0.1 57 83-140 69-130 (353)
4 PF02028 BCCT: BCCT family tra 60.8 7.4 0.00016 35.1 2.6 51 87-140 267-331 (485)
5 PF07629 DUF1590: Protein of u 60.8 3 6.6E-05 26.3 0.2 13 102-114 16-28 (32)
6 KOG4812 Golgi-associated prote 52.2 10 0.00022 33.0 2.0 17 113-129 222-238 (262)
7 PF08173 YbgT_YccB: Membrane b 52.1 13 0.00029 22.5 2.0 18 117-134 2-19 (28)
8 PF03244 PSI_PsaH: Photosystem 45.4 7 0.00015 31.4 0.0 17 6-22 5-21 (140)
9 PRK09950 putative transporter; 45.3 16 0.00034 33.5 2.2 50 88-140 278-340 (506)
10 PRK09174 F0F1 ATP synthase sub 39.9 28 0.0006 27.9 2.6 26 107-132 44-69 (204)
11 TIGR02106 cyd_oper_ybgT cyd op 37.7 30 0.00066 21.4 2.0 19 117-135 2-20 (30)
12 PRK14749 hypothetical protein; 37.3 32 0.00069 21.5 2.0 20 116-135 1-20 (30)
13 COG4890 Predicted outer membra 36.5 32 0.00068 22.4 2.0 20 116-135 1-20 (37)
14 TIGR00842 bcct choline/carniti 36.1 24 0.00052 31.8 1.9 49 89-140 232-294 (453)
15 PF15017 AF1Q: Drug resistance 34.2 14 0.0003 27.3 0.1 12 73-84 73-84 (87)
16 PLN00170 photosystem II light- 30.2 17 0.00037 31.0 0.0 23 3-26 2-24 (255)
17 PRK03356 L-carnitine/gamma-but 28.2 40 0.00087 30.9 2.0 48 88-140 281-343 (504)
18 PRK09928 choline transport pro 26.3 43 0.00093 32.2 1.9 41 88-128 285-341 (679)
19 smart00682 G2F G2 nidogen doma 25.9 25 0.00054 29.6 0.2 43 65-109 58-101 (227)
20 KOG2174 Leptin receptor gene-r 25.3 42 0.00092 26.7 1.4 67 79-145 43-129 (131)
21 COG5454 Predicted secreted pro 22.8 75 0.0016 24.0 2.2 22 112-133 5-26 (89)
22 KOG1321 Protoheme ferro-lyase 22.8 49 0.0011 30.3 1.5 23 85-107 201-223 (395)
No 1
>PLN00046 photosystem I reaction center subunit O; Provisional
Probab=100.00 E-value=1.5e-79 Score=475.75 Aligned_cols=141 Identities=72% Similarity=1.233 Sum_probs=136.2
Q ss_pred ccccccCCcceeccccCCCCCCCccccccCcccCcccccchhhhhccCCCceeeeccchhccccccceeeeeeccccCCc
Q 032153 2 AAAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSI 81 (146)
Q Consensus 2 ~aat~~~~stv~gl~~ssls~~~~~~l~s~f~~~~V~arnpl~~a~a~~gr~tcF~rdWlr~d~~V~~~gliGW~~PSsi 81 (146)
|||+|++++||+||+++++++ +.+++|+|+|++|.+|||++++.+++++++ |||||||+|++||++|||||++||+|
T Consensus 1 maa~~~a~stV~gL~~~sl~~--~~~~ss~f~~~~~~~~~~~~~~~a~~~~~t-F~rDWLr~d~~V~~~gl~GW~~PS~i 77 (141)
T PLN00046 1 MAATAATASTVSGLGSSSLSA--PRRLSSGFVKGPVTVRRRAVLARASGSKKT-FDRDWLRKDLNVIGFGLIGWLAPSSI 77 (141)
T ss_pred ChHHHHhHHHhhhccccCccc--ccccccccccCcccccchhhhhhhcccccc-cchhhhhcccceeeeeeeeeeccccc
Confidence 566778888999999999986 678999999999999999999999999998 99999999999999999999999999
Q ss_pred cccCCCchhhhhHhhhhhhhcCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccccccccC
Q 032153 82 PAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTEDYFS 145 (146)
Q Consensus 82 pa~~g~SL~glF~~SIG~eLAhFPtgPal~~~FWL~lvtWHlGLF~~ltfGQIG~kgR~e~Yf~ 145 (146)
|+||||||+|+|++|||+|||||||||||||||||||||||+|||+|||||||||||||||||+
T Consensus 78 pa~~g~sL~glF~~sIg~~LahfPt~Pal~~~fWL~litWHlGLF~~ltfGqIG~kgR~egYF~ 141 (141)
T PLN00046 78 PAIGGNSLTGLFFDSIGTELAHFPTGPALDSKFWLWLITWHLGLFLCLTFGQIGFKGRKQGYFN 141 (141)
T ss_pred cccCCchhHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHhhhcccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
No 2
>TIGR03059 psaOeuk photosystem I protein PsaO. Members of this family are the PsaO protein of photosystem I. This protein is found in chloroplasts but not in Cyanobacteria.
Probab=100.00 E-value=1.8e-57 Score=327.85 Aligned_cols=80 Identities=56% Similarity=1.173 Sum_probs=78.8
Q ss_pred cccceeeeeeccccC--CccccCCCchhhhhHhhhhhhhcCCCCCCCCCchHHHHHHHHHHHHHHHHHhhcccccccccc
Q 032153 65 LNVIGFGLIGWLAPS--SIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTED 142 (146)
Q Consensus 65 ~~V~~~gliGW~~PS--sipa~~g~SL~glF~~SIG~eLAhFPtgPal~~~FWL~lvtWHlGLF~~ltfGQIG~kgR~e~ 142 (146)
++||++|||||++|| +||+|||+||||+|++||||||||||||||+||||||||||||+|||+|||||||||||||||
T Consensus 1 ~~V~~~gliGW~~Ps~~~ip~~~g~SLtglF~~sIg~~LAhFPt~Pal~~~fWL~litWH~GLF~~ltfGQIG~qgR~~~ 80 (82)
T TIGR03059 1 APVAAIGFVGWVLPTVLNVPLYGGKSLTGLFASSIGENLAHFPAPPALDDPFWLLLFTWHSGLFLVMTFGQIGWQGRKNG 80 (82)
T ss_pred CCceeEeeEEeeccccccccccCCchHHHHHHHHHHHHHhcCCCCCccCCchHHHHHHHHHHHHHHHhhhhceeeccccc
Confidence 489999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 032153 143 YF 144 (146)
Q Consensus 143 Yf 144 (146)
||
T Consensus 81 Yf 82 (82)
T TIGR03059 81 YY 82 (82)
T ss_pred CC
Confidence 98
No 3
>PLN00074 photosystem II D2 protein (PsbD); Provisional
Probab=77.26 E-value=0.74 Score=41.20 Aligned_cols=57 Identities=26% Similarity=0.158 Sum_probs=40.7
Q ss_pred ccCCCchhhhhHhhhhhhhcCCCC---CC-C-CCchHHHHHHHHHHHHHHHHHhhcccccccc
Q 032153 83 AINGKSLTGLFFESIGTELAHFPT---PP-P-LTSQFWLWLVTWHFGLFLCLTFGQIGFKGRT 140 (146)
Q Consensus 83 a~~g~SL~glF~~SIG~eLAhFPt---gP-a-l~~~FWL~lvtWHlGLF~~ltfGQIG~kgR~ 140 (146)
..++|-+++...-+ ...+.||.- +| | .+-.=|||.=-|-.-.-+|++.|-+.|-+|+
T Consensus 69 l~g~N~it~av~p~-s~aigh~~~~iW~~ea~~~~~eWl~nGG~wqli~~~~~~~~~~W~lR~ 130 (353)
T PLN00074 69 LEGCNFLTAAVSTP-ANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQ 130 (353)
T ss_pred hcCCceeeeeecCc-cccccccchhhccccccccHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 34778888876544 333346654 45 4 6667799988777777788899999998886
No 4
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=60.81 E-value=7.4 Score=35.11 Aligned_cols=51 Identities=41% Similarity=0.722 Sum_probs=36.3
Q ss_pred CchhhhhHhhhhhhhcCCC-----CCCCCCch---------HHHHHHHHHHHHHHHHHhhcccccccc
Q 032153 87 KSLTGLFFESIGTELAHFP-----TPPPLTSQ---------FWLWLVTWHFGLFLCLTFGQIGFKGRT 140 (146)
Q Consensus 87 ~SL~glF~~SIG~eLAhFP-----tgPal~~~---------FWL~lvtWHlGLF~~ltfGQIG~kgR~ 140 (146)
.-+...|.+|+|+-+.||| |.|.-++. ||.|-+.|- -|..+....|. ||||
T Consensus 267 ~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~~~w~~~WTvFYwaWWiawa--PfvG~FiArIS-kGRT 331 (485)
T PF02028_consen 267 VFILNLFTESIGDYLQNFFRMSLWTDPFGNSGQWPQDWTVFYWAWWIAWA--PFVGLFIARIS-KGRT 331 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--TTTTTTTHHHHHTHHHHHHHHHHTH--HHHHHHHHHCT-TTSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCcccccCCCHHHHHHHHHHHH--HHHHHHHhhhc-CCcC
Confidence 4466789999999999987 67777666 899999994 33333344453 6676
No 5
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=60.77 E-value=3 Score=26.27 Aligned_cols=13 Identities=54% Similarity=1.058 Sum_probs=10.4
Q ss_pred cCCCCCCCCCchH
Q 032153 102 AHFPTPPPLTSQF 114 (146)
Q Consensus 102 AhFPtgPal~~~F 114 (146)
|.||||||....|
T Consensus 16 a~fptppaa~a~f 28 (32)
T PF07629_consen 16 ARFPTPPAARAGF 28 (32)
T ss_pred cccCCChhhhhcc
Confidence 6899999986554
No 6
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=52.17 E-value=10 Score=33.04 Aligned_cols=17 Identities=47% Similarity=1.165 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032153 113 QFWLWLVTWHFGLFLCL 129 (146)
Q Consensus 113 ~FWL~lvtWHlGLF~~l 129 (146)
++|||.|.--+|++|.|
T Consensus 222 q~wLwwi~~vlG~ll~l 238 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFL 238 (262)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 89999999999998876
No 7
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=52.08 E-value=13 Score=22.55 Aligned_cols=18 Identities=33% Similarity=1.062 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 032153 117 WLVTWHFGLFLCLTFGQI 134 (146)
Q Consensus 117 ~lvtWHlGLF~~ltfGQI 134 (146)
|-++|=+|+.+..+||-|
T Consensus 2 WYfaWilG~~lA~~~~i~ 19 (28)
T PF08173_consen 2 WYFAWILGVLLACAFGIL 19 (28)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 778999999999999865
No 8
>PF03244 PSI_PsaH: Photosystem I reaction centre subunit VI; InterPro: IPR004928 Photosystem I, a membrane complex found in the chloroplasts of plants and cyanobacteria uses light energy to transfer electrons from plastocyanin to ferredoxin []. The electron transfer components of the photosystem include the primary electron donor chlorophyll P-700 and 5 electron acceptors: chlorophyll (A0), phylloquinone (A1) and three 4Fe-4S iron-sulphur centres, designated Fx, Fa and Fb. The role of this protein, subunit VI or PsaH, may be in docking of the light harvesting complex I antenna to the core complex.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 2WSF_H 2WSE_H 2WSC_H 2O01_H.
Probab=45.38 E-value=7 Score=31.36 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=0.0
Q ss_pred ccCCcceeccccCCCCC
Q 032153 6 FASSSPVVGLGSSSLSS 22 (146)
Q Consensus 6 ~~~~stv~gl~~ssls~ 22 (146)
..+.++|-||++||++-
T Consensus 5 ~~~~~~~~gla~ss~~g 21 (140)
T PF03244_consen 5 VQPTAAVKGLAGSSLSG 21 (140)
T ss_dssp -----------------
T ss_pred eeccccccccccccccc
Confidence 33445799999999994
No 9
>PRK09950 putative transporter; Provisional
Probab=45.31 E-value=16 Score=33.48 Aligned_cols=50 Identities=22% Similarity=0.502 Sum_probs=33.0
Q ss_pred chhhhhHhhhhhhhcCCCC-----CCCCCc--------hHHHHHHHHHHHHHHHHHhhcccccccc
Q 032153 88 SLTGLFFESIGTELAHFPT-----PPPLTS--------QFWLWLVTWHFGLFLCLTFGQIGFKGRT 140 (146)
Q Consensus 88 SL~glF~~SIG~eLAhFPt-----gPal~~--------~FWL~lvtWHlGLF~~ltfGQIG~kgR~ 140 (146)
-+...|.+|||.-+.||+. .|.-++ =||.|-+.|- -|..+....|- ||||
T Consensus 278 fil~~~~~siG~yl~~f~~ms~~t~~~~~~~w~~~WTiFYWaWWiawa--PfvG~FiARIS-rGRT 340 (506)
T PRK09950 278 FITNNIINSIGLTTQNFLQMSLFTDPMGDGSFTRNWTVFYWLWWISYT--PGVAMFVTRVS-RGRK 340 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCccCccccChHHHHHHHHHHH--HHHHHHhhhhc-CCcC
Confidence 3667899999999999873 332222 2799999994 33333344553 6666
No 10
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.86 E-value=28 Score=27.92 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=23.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhh
Q 032153 107 PPPLTSQFWLWLVTWHFGLFLCLTFG 132 (146)
Q Consensus 107 gPal~~~FWL~lvtWHlGLF~~ltfG 132 (146)
=|++|..+|-+-+.|.+-.|++|+|-
T Consensus 44 ~p~~~~~~~~~~l~w~~I~FliL~~l 69 (204)
T PRK09174 44 FPPFDSTHYASQLLWLAITFGLFYLF 69 (204)
T ss_pred CCCCcchhccHHHHHHHHHHHHHHHH
Confidence 38999999999999999999988763
No 11
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=37.65 E-value=30 Score=21.37 Aligned_cols=19 Identities=32% Similarity=0.966 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 032153 117 WLVTWHFGLFLCLTFGQIG 135 (146)
Q Consensus 117 ~lvtWHlGLF~~ltfGQIG 135 (146)
|-++|=+|+.+..+||-|.
T Consensus 2 WYfaWilG~~lA~~~~v~~ 20 (30)
T TIGR02106 2 WYFAWILGTLLACAFGVLN 20 (30)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 7789999999999998764
No 12
>PRK14749 hypothetical protein; Provisional
Probab=37.28 E-value=32 Score=21.48 Aligned_cols=20 Identities=20% Similarity=0.801 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 032153 116 LWLVTWHFGLFLCLTFGQIG 135 (146)
Q Consensus 116 L~lvtWHlGLF~~ltfGQIG 135 (146)
.|-++|-+|+-+...||-|-
T Consensus 1 MWYfaWiLG~~lAc~f~iln 20 (30)
T PRK14749 1 MWYLLWFVGILLMCSLSTLV 20 (30)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 37889999999998888763
No 13
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=36.49 E-value=32 Score=22.39 Aligned_cols=20 Identities=40% Similarity=1.066 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 032153 116 LWLVTWHFGLFLCLTFGQIG 135 (146)
Q Consensus 116 L~lvtWHlGLF~~ltfGQIG 135 (146)
.|.+.|-+|+-+.-.||-|-
T Consensus 1 MWYFaWiLG~lLAcAFgiin 20 (37)
T COG4890 1 MWYFAWILGLLLACAFGIIN 20 (37)
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 37889999999999999874
No 14
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=36.12 E-value=24 Score=31.85 Aligned_cols=49 Identities=35% Similarity=0.787 Sum_probs=32.4
Q ss_pred hhhhhHhhhhhhhcCCCC-----CCCCCc---------hHHHHHHHHHHHHHHHHHhhcccccccc
Q 032153 89 LTGLFFESIGTELAHFPT-----PPPLTS---------QFWLWLVTWHFGLFLCLTFGQIGFKGRT 140 (146)
Q Consensus 89 L~glF~~SIG~eLAhFPt-----gPal~~---------~FWL~lvtWHlGLF~~ltfGQIG~kgR~ 140 (146)
+...|.+|+|.-+.||+. .|...+ =||.|-+.|- -|..+....|- ||||
T Consensus 232 il~~~~~s~G~yl~~f~~ms~~t~~~~~~~~w~~~WTiFYWaWwiawa--PfvG~FiARIS-rGRT 294 (453)
T TIGR00842 232 LLNSFVDSIGNYLQNFPQMSFRTDPFDGKGGWPGNWTVFYWAWWISWS--PFVGMFIARIS-RGRT 294 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccCccccchHHHHHHHHHHH--HHHHhheeeec-CCcC
Confidence 456789999999999874 331111 2899999994 34444445553 6666
No 15
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=34.19 E-value=14 Score=27.26 Aligned_cols=12 Identities=50% Similarity=1.043 Sum_probs=9.6
Q ss_pred eeccccCCcccc
Q 032153 73 IGWLAPSSIPAI 84 (146)
Q Consensus 73 iGW~~PSsipa~ 84 (146)
=||+-||||.-|
T Consensus 73 gGWITPsNIkqi 84 (87)
T PF15017_consen 73 GGWITPSNIKQI 84 (87)
T ss_pred Cccccchhhhhh
Confidence 389999999644
No 16
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=30.22 E-value=17 Score=30.99 Aligned_cols=23 Identities=52% Similarity=0.566 Sum_probs=15.4
Q ss_pred cccccCCcceeccccCCCCCCCcc
Q 032153 3 AAAFASSSPVVGLGSSSLSSPKRT 26 (146)
Q Consensus 3 aat~~~~stv~gl~~ssls~~~~~ 26 (146)
|.++ +++..+||+++.++-.+|.
T Consensus 2 a~s~-s~a~~~~~~ssf~~g~~~~ 24 (255)
T PLN00170 2 AAAT-SGAVLNGLGSSFLTGGKRS 24 (255)
T ss_pred chhh-hHHHHhhccCcccccchhh
Confidence 3334 3456899999999865544
No 17
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=28.21 E-value=40 Score=30.90 Aligned_cols=48 Identities=33% Similarity=0.717 Sum_probs=33.2
Q ss_pred chhhhhHhhhhhhhcCCC-----CCCCCCc--------hHHHHHHHHH--HHHHHHHHhhcccccccc
Q 032153 88 SLTGLFFESIGTELAHFP-----TPPPLTS--------QFWLWLVTWH--FGLFLCLTFGQIGFKGRT 140 (146)
Q Consensus 88 SL~glF~~SIG~eLAhFP-----tgPal~~--------~FWL~lvtWH--lGLF~~ltfGQIG~kgR~ 140 (146)
-+...|.+|||.-|.||| |.|--++ =||.|-+.|- +|+|+. .|- ||||
T Consensus 281 fil~~~~~s~G~yl~nf~~ms~~t~~~~~~~w~~~WTiFYWaWWiawaPfvG~FiA----RIS-rGRT 343 (504)
T PRK03356 281 FIMNYFTDSVGMLLMYLPRMLFYTDPIGKGGFPQGWTVFYWAWWVIYAIQMSIFLA----RIS-RGRT 343 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccCccccCHHHHHHHHHHHHHHHHHHHH----HHc-CCCc
Confidence 356789999999999987 4443221 2899999994 566664 332 5665
No 18
>PRK09928 choline transport protein BetT; Provisional
Probab=26.34 E-value=43 Score=32.15 Aligned_cols=41 Identities=29% Similarity=0.629 Sum_probs=29.3
Q ss_pred chhhhhHhhhhhhhcCCCC-----CCCCC-ch--------HHHHHHHHH--HHHHHH
Q 032153 88 SLTGLFFESIGTELAHFPT-----PPPLT-SQ--------FWLWLVTWH--FGLFLC 128 (146)
Q Consensus 88 SL~glF~~SIG~eLAhFPt-----gPal~-~~--------FWL~lvtWH--lGLF~~ 128 (146)
-|...|.+|||.-|.|||. .|--. ++ ||.|-+.|= +|+|+.
T Consensus 285 fil~~~~~siG~yl~~f~~msf~t~~~~~~~~W~~~WTiFYWAWWiaWaPFVGlFIA 341 (679)
T PRK09928 285 FLLNALVLNVGDYVNRFMGMTLNSFAFDRPTEWMNNWTLFFWAWWVAWSPFVGLFLA 341 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 3677899999999999883 32211 23 599999994 566654
No 19
>smart00682 G2F G2 nidogen domain and fibulin.
Probab=25.93 E-value=25 Score=29.63 Aligned_cols=43 Identities=33% Similarity=0.315 Sum_probs=31.0
Q ss_pred cccceeeeeeccccCCc-cccCCCchhhhhHhhhhhhhcCCCCCCC
Q 032153 65 LNVIGFGLIGWLAPSSI-PAINGKSLTGLFFESIGTELAHFPTPPP 109 (146)
Q Consensus 65 ~~V~~~gliGW~~PSsi-pa~~g~SL~glF~~SIG~eLAhFPtgPa 109 (146)
+.+..+|.|||+---.+ ++.||-+|||-=|....+ -+||++-.
T Consensus 58 ~l~~ig~~igWlFA~e~~~a~NGf~lTGG~F~~~s~--v~F~~ge~ 101 (227)
T smart00682 58 PLVPIGGTIGWLFAKEQGGAVNGFQLTGGVFTRETE--VTFAGGEI 101 (227)
T ss_pred hhhhhccceeeeEEeccCCccccEEecCeEEEEEEE--EEECCCCE
Confidence 35667788999966666 577999999987766543 35666543
No 20
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=25.27 E-value=42 Score=26.71 Aligned_cols=67 Identities=30% Similarity=0.327 Sum_probs=48.6
Q ss_pred CCcc--ccCCCchhhhhH--hhhhhhhcCCCCCCCCCchHHHHHHHHHHHH----------------HHHHHhhcccccc
Q 032153 79 SSIP--AINGKSLTGLFF--ESIGTELAHFPTPPPLTSQFWLWLVTWHFGL----------------FLCLTFGQIGFKG 138 (146)
Q Consensus 79 Ssip--a~~g~SL~glF~--~SIG~eLAhFPtgPal~~~FWL~lvtWHlGL----------------F~~ltfGQIG~kg 138 (146)
|-+| .+++.+.+-.|. +.=..|||||=|+-...+.|=|=.|.-|.|| |+|..+.-+=|++
T Consensus 43 ~PiP~l~f~a~~~~~d~~~~~~~~idlA~FlTg~~vvs~falPiVl~ha~lI~~gAc~l~~tg~~iIF~~ii~~f~~f~~ 122 (131)
T KOG2174|consen 43 SPIPNLLFIAGRTQHDFDATSDACIDLAKFLTGAIVVSAFALPIVLAHAGLIGWGACALVLTGNSIIFLVIILFFLIFGG 122 (131)
T ss_pred cCCchHHhccccceecccccccHHHHHHHHHhcchhhhhhhhHHHHHHhhHhhhhhhhhhhcCCchhHHHHHHHHHHHcC
Confidence 4467 557766665553 3467899999999999999999999999886 5555555555555
Q ss_pred ccccccC
Q 032153 139 RTEDYFS 145 (146)
Q Consensus 139 R~e~Yf~ 145 (146)
-.++||+
T Consensus 123 ~dd~~~s 129 (131)
T KOG2174|consen 123 DDDESWS 129 (131)
T ss_pred Cccchhh
Confidence 5565554
No 21
>COG5454 Predicted secreted protein [Function unknown]
Probab=22.85 E-value=75 Score=23.97 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhc
Q 032153 112 SQFWLWLVTWHFGLFLCLTFGQ 133 (146)
Q Consensus 112 ~~FWL~lvtWHlGLF~~ltfGQ 133 (146)
|-|=+|+|+|-.-||++|-||.
T Consensus 5 s~fAiyfiiWWtvLFavLP~g~ 26 (89)
T COG5454 5 SWFAIYFIIWWTVLFAVLPLGV 26 (89)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 4567899999999999998874
No 22
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=22.81 E-value=49 Score=30.33 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.4
Q ss_pred CCCchhhhhHhhhhhhhcCCCCC
Q 032153 85 NGKSLTGLFFESIGTELAHFPTP 107 (146)
Q Consensus 85 ~g~SL~glF~~SIG~eLAhFPtg 107 (146)
-...|-..|.+.|-+||+|||.+
T Consensus 201 t~~glIkafA~~I~keL~~F~~~ 223 (395)
T KOG1321|consen 201 TREGLIKAFAENIEKELQTFPEP 223 (395)
T ss_pred ccchHHHHHHHHHHHHHHhcCCc
Confidence 45668899999999999999987
Done!