BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032156
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ACI|A Chain A, Structure Of D166a Arginine Deiminase
pdb|2ACI|B Chain B, Structure Of D166a Arginine Deiminase
pdb|2ACI|C Chain C, Structure Of D166a Arginine Deiminase
pdb|2ACI|D Chain D, Structure Of D166a Arginine Deiminase
Length = 418
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 46 AGACGGKVTCFERDWLRT-DLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHF 104
A + G +T R WL + + + LIG +A +PA G ++ ++ E +G + F
Sbjct: 96 ADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGH--SSF 153
Query: 105 PTPPPLTSQFWLWLVTWHFG 124
PP +QF W +G
Sbjct: 154 LLPPLPNTQFTRATTCWIYG 173
>pdb|2AAF|A Chain A, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|B Chain B, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|C Chain C, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|D Chain D, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
Length = 418
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 46 AGACGGKVTCFERDWLRT-DLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHF 104
A + G +T R WL + + + LIG +A +PA G ++ ++ E +G + F
Sbjct: 96 ADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGH--SSF 153
Query: 105 PTPPPLTSQFWLWLVTWHFG 124
PP +QF W +G
Sbjct: 154 LLPPLPNTQFTRDTTCWIYG 173
>pdb|2ABR|A Chain A, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|B Chain B, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|C Chain C, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|D Chain D, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
Length = 418
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 46 AGACGGKVTCFERDWLRT-DLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHF 104
A + G +T R WL + + + LIG +A +PA G ++ ++ E +G + F
Sbjct: 96 ADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGH--SSF 153
Query: 105 PTPPPLTSQFWLWLVTWHFG 124
PP +QF W +G
Sbjct: 154 LLPPLPNTQFTRDTTCWIYG 173
>pdb|2A9G|A Chain A, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|B Chain B, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|C Chain C, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|D Chain D, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
Length = 418
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 46 AGACGGKVTCFERDWLRT-DLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHF 104
A + G +T R WL + + + LIG +A +PA G ++ ++ E +G + F
Sbjct: 96 ADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGH--SSF 153
Query: 105 PTPPPLTSQFWLWLVTWHFG 124
PP +QF W +G
Sbjct: 154 LLPPLPNTQFTRDTTCWIYG 173
>pdb|1RXX|A Chain A, Structure Of Arginine Deiminase
pdb|1RXX|B Chain B, Structure Of Arginine Deiminase
pdb|1RXX|C Chain C, Structure Of Arginine Deiminase
pdb|1RXX|D Chain D, Structure Of Arginine Deiminase
Length = 421
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 46 AGACGGKVTCFERDWLRT-DLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHF 104
A + G +T R WL + + + LIG +A +PA G ++ + E +G + F
Sbjct: 99 ADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKXYREYLGH--SSF 156
Query: 105 PTPPPLTSQFWLWLVTWHFG 124
PP +QF W +G
Sbjct: 157 LLPPLPNTQFTRDTTCWIYG 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,095,860
Number of Sequences: 62578
Number of extensions: 161574
Number of successful extensions: 348
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 10
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)