BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032156
         (146 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C4L9N1|MUTL_TOLAT DNA mismatch repair protein MutL OS=Tolumonas auensis (strain DSM
           9187 / TA4) GN=mutL PE=3 SV=1
          Length = 594

 Score = 35.8 bits (81), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 44  RVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAIN 85
           RV  ACG +   F +  LR D   +G  L GWLAP  + AIN
Sbjct: 211 RVVQACGAE---FMQAALRIDSEHLGLHLYGWLAPQPLTAIN 249


>sp|A6NHS7|MANS4_HUMAN MANSC domain-containing protein 4 OS=Homo sapiens GN=MANSC4 PE=4
           SV=3
          Length = 340

 Score = 32.0 bits (71), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 60  WLR-TDLNVIGFGLIGWLAPSS--IPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWL 116
           W R T LN      I  ++PS+  I   + K+++  FFE I T+L+H P PP L S   L
Sbjct: 200 WARFTSLNESITTKINKVSPSTDFISNPDNKTISP-FFEPIDTKLSHMPVPPGLNSSKQL 258


>sp|A2BTR9|GCST_PROMS Aminomethyltransferase OS=Prochlorococcus marinus (strain AS9601)
           GN=gcvT PE=3 SV=1
          Length = 370

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 56  FERD--WLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPT 106
           +E D  W++ +LN+    +  +     + A+ GK+  GLF E I + ++H P 
Sbjct: 123 YEEDFQWIKNNLNMSEISITNFKKDKVLLALQGKNSFGLFEEWIESSISHIPN 175


>sp|O22229|TRXB3_ARATH NADPH-dependent thioredoxin reductase 3 OS=Arabidopsis thaliana
          GN=NTRC PE=1 SV=2
          Length = 529

 Score = 30.8 bits (68), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 8  SSSPVVGLGSSSLSSPKRTALGSSFVKSP 36
          ++SP +G+G +S+SSP R +  SS +  P
Sbjct: 2  AASPKIGIGIASVSSPHRVSAASSALSPP 30


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,828,506
Number of Sequences: 539616
Number of extensions: 2419669
Number of successful extensions: 5639
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5634
Number of HSP's gapped (non-prelim): 7
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)