Query 032156
Match_columns 146
No_of_seqs 27 out of 29
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 16:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gl4_A Nidogen-1, entactin; im 26.3 6 0.0002 32.7 -2.2 28 68-95 107-135 (285)
2 4ain_A Glycine betaine transpo 24.6 56 0.0019 29.1 3.5 47 89-140 289-353 (539)
3 2wsw_A BCCT family betaine/car 15.1 35 0.0012 30.1 0.1 47 89-140 287-348 (509)
4 2wsc_H Photosystem I reaction 13.0 43 0.0015 26.0 0.0 13 9-21 12-24 (144)
5 4g26_A Pentatricopeptide repea 9.1 77 0.0026 26.1 0.3 26 94-119 385-411 (501)
6 3lw5_F Photosystem I reaction 7.3 1.7E+02 0.0059 22.7 1.5 13 128-140 91-103 (154)
7 1avb_A Arcelin-1; lectin-like 6.6 2.4E+02 0.0082 21.6 2.0 78 16-94 20-107 (226)
8 1fat_A Phytohemagglutinin-L; g 6.3 2.6E+02 0.009 21.7 2.1 77 16-93 20-109 (252)
9 1gzc_A Erythrina crista-galli 5.8 3.3E+02 0.011 21.0 2.4 77 16-93 22-112 (239)
10 3hgf_A Rhoptry protein fragmen 5.7 1.4E+02 0.0047 22.1 0.2 16 85-100 60-75 (107)
No 1
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=26.28 E-value=6 Score=32.68 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=21.9
Q ss_pred ceeeeeeccccCCcc-ccCCCchhhhhHh
Q 032156 68 IGFGLIGWLAPSSIP-AINGKSLTGLFFE 95 (146)
Q Consensus 68 ~~~gliGW~~PSsip-a~~g~SL~glF~~ 95 (146)
...+.|||+-.-.+| +.||-||||-=|.
T Consensus 107 ~ig~~igWlfA~e~~~~~NGfslTgG~F~ 135 (285)
T 1gl4_A 107 PIGGIIGWMFAVEQDGFKNGFSITGGEFT 135 (285)
T ss_dssp HHHHHHHHHTCEECTTCCCHHHHHTTEEE
T ss_pred hhccceeeeeecccCccccceEeeCceEE
Confidence 345999999887775 7799999965443
No 2
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=24.57 E-value=56 Score=29.13 Aligned_cols=47 Identities=34% Similarity=0.789 Sum_probs=32.8
Q ss_pred hhhhhHhhhhhhhcCCC-----CCCCCC-----------chHHHHHHHHH--HHHHHHHHhhcccccccc
Q 032156 89 LTGLFFESIGTELAHFP-----TPPPLT-----------SQFWLWLVTWH--FGLFLCLTFGQIGFKGRT 140 (146)
Q Consensus 89 L~glF~~SIG~eLAhFP-----tgPal~-----------~~FWL~lvtWH--lGLF~~ltfGQIG~kgR~ 140 (146)
+...|.++||.-|.||| +.|.-+ -=||-|-+.|- +|+|+ ..|- +|||
T Consensus 289 il~~~~~s~G~yl~nf~~ms~~t~~~~~~~~~~W~~~WTiFYWaWWiswaPfvG~FI----ARIS-rGRT 353 (539)
T 4ain_A 289 ILNLLPGSIGNYLSNFFQMAGRTAMSADGTAGEWLGSWTIFYWAWWISWSPFVGMFL----ARIS-RGRS 353 (539)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSSTTTTCCHHHHHHTHHHHHHHHHHHHHHHHHHH----HHTT-TTCB
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCcccCccccchhhcCHHHHHHHHHHHHHHHHHHh----hhcc-CCcC
Confidence 45889999999999965 455432 23899999994 55555 4443 5665
No 3
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=15.13 E-value=35 Score=30.09 Aligned_cols=47 Identities=38% Similarity=0.779 Sum_probs=31.4
Q ss_pred hhhhhHhhhhhhhcCCC-----CCCCCCc--------hHHHHHHHHH--HHHHHHHHhhcccccccc
Q 032156 89 LTGLFFESIGTELAHFP-----TPPPLTS--------QFWLWLVTWH--FGLFLCLTFGQIGFKGRT 140 (146)
Q Consensus 89 L~glF~~SIG~eLAhFP-----tgPal~~--------~FWL~lvtWH--lGLF~~ltfGQIG~kgR~ 140 (146)
+...|.++||.-|.||| +.|.-++ =||-|-+.|- +|+|+. .|- +|||
T Consensus 287 il~~~~~~~G~yl~nf~~ms~~~~~~~~~~w~~~WTiFYWaWWisWaPfvG~FIA----RIS-rGRT 348 (509)
T 2wsw_A 287 IVNYFTDSVGTLLMYMPRMLFYTDPIGKGGFPQAWTVFYWAWWVIYAIQMSIFLA----RIS-KGRT 348 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCTTTCCCHHHHTHHHHHHHHHHTHHHHHHHHH----HTT-TTCB
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCCCccChhhccHHHHHHHHHHHHHHHHHHhh----eec-CCcC
Confidence 45578999999988765 4443222 3799999994 566654 442 6666
No 4
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=13.05 E-value=43 Score=25.98 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=0.0
Q ss_pred CcceeccccCCCC
Q 032156 9 SSPVVGLGSSSLS 21 (146)
Q Consensus 9 ~stv~gl~~ssls 21 (146)
+++|-||++||++
T Consensus 12 p~~~kgl~gSs~~ 24 (144)
T 2wsc_H 12 PTTLKGLAGSSIA 24 (144)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 4457799999998
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=9.06 E-value=77 Score=26.14 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=17.0
Q ss_pred HhhhhhhhcCCCCCC-CCCchHHHHHH
Q 032156 94 FESIGTELAHFPTPP-PLTSQFWLWLV 119 (146)
Q Consensus 94 ~~SIG~eLAhFPtgP-al~~~FWL~lv 119 (146)
.+.+.++=.=|-|++ .-||+||||--
T Consensus 385 ~~~~~~~~~~~~t~~~s~DD~~~lyAa 411 (501)
T 4g26_A 385 LEKWKNAGALYATPPGSNDDWYWLYAA 411 (501)
T ss_dssp HHHHHHTTCEEEECTTCCHHHHHHHHH
T ss_pred HHHHHhcCeEEeCCCCCCchHHHHHHH
Confidence 344444444477776 56889999853
No 6
>3lw5_F Photosystem I reaction center subunit III, chloro; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_F*
Probab=7.27 E-value=1.7e+02 Score=22.73 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=10.4
Q ss_pred HHHhhcccccccc
Q 032156 128 CLTFGQIGFKGRT 140 (146)
Q Consensus 128 ~ltfGQIG~kgR~ 140 (146)
..+-|-|||-||+
T Consensus 91 LYIAGwIGW~GRs 103 (154)
T 3lw5_F 91 LYIAGWIGWVGRS 103 (154)
T ss_dssp HHHTTTTTTTTTT
T ss_pred HHHhhhhhhhhHH
Confidence 3456999999996
No 7
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1
Probab=6.56 E-value=2.4e+02 Score=21.57 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=43.9
Q ss_pred ccCCCCCCCccccccC-----cccCcccccchhhhhccCCCceeeeccch----hccccccceeeeeeccccCC-ccccC
Q 032156 16 GSSSLSSPKRTALGSS-----FVKSPVAARNPLRVAGACGGKVTCFERDW----LRTDLNVIGFGLIGWLAPSS-IPAIN 85 (146)
Q Consensus 16 ~~ssls~~~~~~l~s~-----f~~~~V~arnpl~~a~a~~gr~tcF~rdW----lr~d~~V~~~gliGW~~PSs-ipa~~ 85 (146)
|.|.+++...++|+.. ...-++--+.|++......|++..|.-.- ........+=||.=|++|.. .|.-.
T Consensus 20 G~A~v~~~g~l~LT~~~~~~~~~~Gra~y~~Pv~l~~~~~g~vaSFsT~F~F~I~~~~~~~~gdGlAF~l~p~~~~p~~~ 99 (226)
T 1avb_A 20 GDATVSSEGHLLLTNVKGNEEDSMGRAFYSAPIQINDRTIDNLASFSTNFTFRINAKNIENSAYGLAFALVPVGSRPKLK 99 (226)
T ss_dssp ETCEECTTSCEECSCSSSCCTTCEEEEEESSCEECEEGGGTEEEEEEEEEEEEEEESSTTSCCEEEEEEEEETTCCCCCC
T ss_pred ccEEECCCCEEEeCCCCCCccCCeEEEEeCCCEEeecCCCCCcccEEEEEEEEEeCCCCCCCCCcEEEEEecCCCCCCCC
Confidence 4555554556777644 23345555667776655566665554432 11122345778888999963 45422
Q ss_pred CCchhhhhH
Q 032156 86 GKSLTGLFF 94 (146)
Q Consensus 86 g~SL~glF~ 94 (146)
| ...|||-
T Consensus 100 g-~~LGl~n 107 (226)
T 1avb_A 100 G-RYLGLFN 107 (226)
T ss_dssp G-GGTTTCS
T ss_pred C-Ccccccc
Confidence 3 3467774
No 8
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A*
Probab=6.27 E-value=2.6e+02 Score=21.74 Aligned_cols=77 Identities=21% Similarity=0.195 Sum_probs=44.1
Q ss_pred ccCCCCCCCccccccC--------cccCcccccchhhhhccCCCceeeeccch----hccccccceeeeeeccccCCcc-
Q 032156 16 GSSSLSSPKRTALGSS--------FVKSPVAARNPLRVAGACGGKVTCFERDW----LRTDLNVIGFGLIGWLAPSSIP- 82 (146)
Q Consensus 16 ~~ssls~~~~~~l~s~--------f~~~~V~arnpl~~a~a~~gr~tcF~rdW----lr~d~~V~~~gliGW~~PSsip- 82 (146)
|.|.+.+...++|+.. ...-++--+.|++......|++..|.-.- ........+=||.=|++|...+
T Consensus 20 G~A~v~~~g~l~LT~~~~~~~~~~~~~Gra~y~~Pv~l~d~~tg~vaSFsT~F~F~I~~~~~~~~gdGlAF~l~p~~~~~ 99 (252)
T 1fat_A 20 RDASVSSSGQLRLTNLNGNGEPRVGSLGRAFYSAPIQIWDNTTGTVASFATSFTFNIQVPNNAGPADGLAFALVPVGSQP 99 (252)
T ss_dssp ETCEECTTSCEECSCCC-CCCCCTTCEEEEEEEEEEECEETTTTEEEEEEEEEEEECCCCSSCBCCEEEEEEEEETTCCC
T ss_pred ccEEECCCCEEEeCCCCCCCccccCCEEEEEECCCEecccCCCCcccceEEEEEEEEeCCCCCCCCCcEEEEEccCCCCC
Confidence 4455544556666643 22355556677777666667766654432 1122244677888899998654
Q ss_pred ccCCCchhhhh
Q 032156 83 AINGKSLTGLF 93 (146)
Q Consensus 83 a~~g~SL~glF 93 (146)
.-.| ...|||
T Consensus 100 ~~~g-~~LGl~ 109 (252)
T 1fat_A 100 KDKG-GFLGLF 109 (252)
T ss_dssp CCSG-GGTTTC
T ss_pred CCCC-cccccc
Confidence 3223 345787
No 9
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli} SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A* 1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A 1uzy_A* 3n35_A* 3n36_A* 3n3h_A*
Probab=5.78 E-value=3.3e+02 Score=20.97 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=42.0
Q ss_pred ccCCCCCCCccccccC--------cccCcccccchhhhhccCCCceeeeccch----hccc-cccceeeeeeccccCCcc
Q 032156 16 GSSSLSSPKRTALGSS--------FVKSPVAARNPLRVAGACGGKVTCFERDW----LRTD-LNVIGFGLIGWLAPSSIP 82 (146)
Q Consensus 16 ~~ssls~~~~~~l~s~--------f~~~~V~arnpl~~a~a~~gr~tcF~rdW----lr~d-~~V~~~gliGW~~PSsip 82 (146)
|.|.+.+...++|+.. ...-++--+.|++......|++..|.-.. .... ....+=||.=+++|...+
T Consensus 22 G~A~v~~~g~l~LT~~~~~~~~~~~~~Gra~y~~Pi~l~~~~tg~vaSFsT~F~F~I~~~~~~~~~gdGlAF~l~p~~~~ 101 (239)
T 1gzc_A 22 GAALITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHMWDSTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSK 101 (239)
T ss_dssp ETCEECTTSCEESSCBCTTSCBCSSCEEEEEESSCEECBCTTTCCBCEEEEEEEEECCCCCSSSCCCEEEEEEEECSSCC
T ss_pred ccEEEcCCCcEEeCCCCcCCcccCCceEEEEeCCCEecccCCCCCccceEEEEEEEEeCCCCCCCCCCcEEEEEecCCCC
Confidence 4455554556666643 22344555567776655556665554332 1111 234577888889997653
Q ss_pred -ccCCCchhhhh
Q 032156 83 -AINGKSLTGLF 93 (146)
Q Consensus 83 -a~~g~SL~glF 93 (146)
.-.|+ ..|||
T Consensus 102 ~~~~g~-~LGl~ 112 (239)
T 1gzc_A 102 PAQGYG-YLGVF 112 (239)
T ss_dssp CCCCGG-GTTTC
T ss_pred CCCCCC-ccccc
Confidence 32333 45777
No 10
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding protein; 4.00A {Plasmodium yoelii yoelii}
Probab=5.71 E-value=1.4e+02 Score=22.08 Aligned_cols=16 Identities=56% Similarity=0.798 Sum_probs=11.8
Q ss_pred CCCchhhhhHhhhhhh
Q 032156 85 NGKSLTGLFFESIGTE 100 (146)
Q Consensus 85 ~g~SL~glF~~SIG~e 100 (146)
-|+||..||.+-|-+|
T Consensus 60 Yg~SL~~LFL~qIdeE 75 (107)
T 3hgf_A 60 YGKSLNKLFLEKIDEE 75 (107)
T ss_dssp HTHHHHHHHHHHC---
T ss_pred HHHhHHHHHHHHHhHH
Confidence 5899999999999876
Done!