Query 032156
Match_columns 146
No_of_seqs 27 out of 29
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 16:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032156.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032156hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gl4a1 d.22.1.2 (A:399-631) D 12.9 8.4 0.00061 29.2 -2.2 32 65-96 58-90 (233)
2 d2bcgg1 c.3.1.3 (G:5-301) Guan 12.9 13 0.00097 22.0 -0.8 14 64-77 7-20 (297)
3 d1lucb_ c.1.16.1 (B:) Bacteria 11.8 28 0.0021 24.6 0.5 44 23-68 66-117 (320)
4 d1d5ta1 c.3.1.3 (A:-2-291,A:38 11.6 16 0.0011 22.4 -0.8 15 63-77 7-21 (336)
5 d1tu1a_ d.107.1.3 (A:) Hypothe 9.7 1.1E+02 0.0077 19.4 2.9 46 54-99 13-63 (144)
6 d1s5da_ d.166.1.1 (A:) Cholera 9.4 38 0.0028 25.7 0.5 16 100-115 163-179 (235)
7 d2iuba2 f.17.3.1 (A:286-349) M 8.8 88 0.0064 17.9 2.0 14 107-120 33-46 (64)
8 d1t3ta6 d.139.1.1 (A:430-616) 8.5 53 0.0039 23.3 1.0 36 12-47 16-51 (187)
9 d1nqka_ c.1.16.4 (A:) Alkanesu 8.0 50 0.0036 23.1 0.6 41 23-66 69-117 (362)
10 d1eara2 d.58.38.1 (A:75-142) U 8.0 60 0.0044 19.8 1.0 9 116-124 15-23 (68)
No 1
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.93 E-value=8.4 Score=29.20 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=24.1
Q ss_pred cccceeeeeeccccCCcc-ccCCCchhhhhHhh
Q 032156 65 LNVIGFGLIGWLAPSSIP-AINGKSLTGLFFES 96 (146)
Q Consensus 65 ~~V~~~gliGW~~PSsip-a~~g~SL~glF~~S 96 (146)
+.+...+.|||+-=-.+| +.||=||||-=|..
T Consensus 58 ~L~~ig~~igWlFA~e~~~a~NGfslTGG~F~~ 90 (233)
T d1gl4a1 58 PLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTR 90 (233)
T ss_dssp TCTHHHHHHHHHTCEECTTCCCHHHHHTTEEEE
T ss_pred hhhhhcCceeeeEEeecCCccCceEeeeeEEEE
Confidence 345667999999666664 77999999865544
No 2
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.90 E-value=13 Score=22.01 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=10.7
Q ss_pred ccccceeeeeeccc
Q 032156 64 DLNVIGFGLIGWLA 77 (146)
Q Consensus 64 d~~V~~~gliGW~~ 77 (146)
|+.|||.|+.|-++
T Consensus 7 DviViGaG~~Gl~~ 20 (297)
T d2bcgg1 7 DVIVLGTGITECIL 20 (297)
T ss_dssp SEEEECCSHHHHHH
T ss_pred CEEEECcCHHHHHH
Confidence 67888888888763
No 3
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio harveyi [TaxId: 669]}
Probab=11.82 E-value=28 Score=24.65 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=29.6
Q ss_pred CCccccccCcccCcccccchhhhhc-------cCCCceee-eccchhccccccc
Q 032156 23 PKRTALGSSFVKSPVAARNPLRVAG-------ACGGKVTC-FERDWLRTDLNVI 68 (146)
Q Consensus 23 ~~~~~l~s~f~~~~V~arnpl~~a~-------a~~gr~tc-F~rdWlr~d~~V~ 68 (146)
.+++.|.++-+..+. |+|++.|+ .|+||+.. +-+-|...+....
T Consensus 66 T~~I~lg~~v~~~~~--~~P~~~A~~~atld~ls~GR~~lG~g~G~~~~~~~~~ 117 (320)
T d1lucb_ 66 TKNAKVASLNHVITT--HHPVRVAEEACLLDQMSEGRFAFGFSDCEKSADMRFF 117 (320)
T ss_dssp CSSSEEEEEEEECTT--SCHHHHHHHHHHHHHHTTSCEEEEEECCCCHHHHHHT
T ss_pred cccceeeeeeccCcc--CChHHHHHHHHHHHHhcCCCceeeeeccccccccccc
Confidence 567888888666544 89998874 58899876 5555555444443
No 4
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.60 E-value=16 Score=22.37 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.5
Q ss_pred cccccceeeeeeccc
Q 032156 63 TDLNVIGFGLIGWLA 77 (146)
Q Consensus 63 ~d~~V~~~gliGW~~ 77 (146)
=|+.|||.|..|.++
T Consensus 7 yDvvIIGaG~aGl~a 21 (336)
T d1d5ta1 7 YDVIVLGTGLTECIL 21 (336)
T ss_dssp CSEEEECCSHHHHHH
T ss_pred CCEEEECCCHHHHHH
Confidence 478999999999874
No 5
>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.72 E-value=1.1e+02 Score=19.37 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=29.2
Q ss_pred eeeccchhccccccceeeeeeccccCCc-----cccCCCchhhhhHhhhhh
Q 032156 54 TCFERDWLRTDLNVIGFGLIGWLAPSSI-----PAINGKSLTGLFFESIGT 99 (146)
Q Consensus 54 tcF~rdWlr~d~~V~~~gliGW~~PSsi-----pa~~g~SL~glF~~SIG~ 99 (146)
..+|++|+.+..||+.++--+=-.|.|| |.-.|.+|.-..-..+.+
T Consensus 13 ~~lP~gw~d~t~ni~~~~~~~~~~~~~lvIsr~~l~~~~~l~~~~~~~~~~ 63 (144)
T d1tu1a_ 13 LEIPDAWQDQSINIFKLPASGPAREASFVISRDASQGDAPFADYVARQLEN 63 (144)
T ss_dssp EEEETTSEECCBEEEEECCBTTBCCEEEEEEEECCCTTSCHHHHHHHHHHH
T ss_pred EeCCCCceeCcceEEEecCCCCCcceEEEEEeecCCCCCCHHHHHHHHHHH
Confidence 3579999999999876543222222232 556888887766665543
No 6
>d1s5da_ d.166.1.1 (A:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Probab=9.41 E-value=38 Score=25.65 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=11.5
Q ss_pred hhcCCCCC-CCCCchHH
Q 032156 100 ELAHFPTP-PPLTSQFW 115 (146)
Q Consensus 100 eLAhFPtg-Pal~~~FW 115 (146)
+||+||.+ ||-.+.+|
T Consensus 163 qla~f~~~~paw~~~~~ 179 (235)
T d1s5da_ 163 GLAGFPPEHRAWREEPW 179 (235)
T ss_dssp GGCCCCTTCGGGGSTTG
T ss_pred hhccCCCCCcccccccc
Confidence 99999975 55555555
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.85 E-value=88 Score=17.93 Aligned_cols=14 Identities=21% Similarity=0.125 Sum_probs=3.0
Q ss_pred CCCCCchHHHHHHH
Q 032156 107 PPPLTSQFWLWLVT 120 (146)
Q Consensus 107 gPal~~~FWL~lvt 120 (146)
-|..+.++|.|.++
T Consensus 33 ~P~~~~~~~~~~~~ 46 (64)
T d2iuba2 33 MPELRWKWGYPVVL 46 (64)
T ss_dssp ---------CHHHH
T ss_pred CCCCCccHHHHHHH
Confidence 35677888877553
No 8
>d1t3ta6 d.139.1.1 (A:430-616) FGAM synthase PurL, PurM-like module, C1 and C2 domains {Salmonella typhimurium [TaxId: 90371]}
Probab=8.50 E-value=53 Score=23.29 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=13.4
Q ss_pred eeccccCCCCCCCccccccCcccCcccccchhhhhc
Q 032156 12 VVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAG 47 (146)
Q Consensus 12 v~gl~~ssls~~~~~~l~s~f~~~~V~arnpl~~a~ 47 (146)
=.|+||++.||......+..--++.|+.-||.+.+.
T Consensus 16 rdGigGas~sS~~~~~~~~~~~~~aVQ~gdP~~ek~ 51 (187)
T d1t3ta6 16 NIGLGGGAASSMASGQSDADLDFASVQRDNPEMERR 51 (187)
T ss_dssp SCC-------------------CTTCCCCCHHHHHH
T ss_pred ccCCCcHHHhhhhhccccccccccccccCCHHHHHH
Confidence 468999988764322333333357899999998765
No 9
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD {Escherichia coli [TaxId: 562]}
Probab=8.03 E-value=50 Score=23.07 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=27.6
Q ss_pred CCccccccCcccCcccccchhhhhc-------cCCCceee-eccchhccccc
Q 032156 23 PKRTALGSSFVKSPVAARNPLRVAG-------ACGGKVTC-FERDWLRTDLN 66 (146)
Q Consensus 23 ~~~~~l~s~f~~~~V~arnpl~~a~-------a~~gr~tc-F~rdWlr~d~~ 66 (146)
-+|+.+.++-. + .-|+|++.|+ .|+||+.. +-+-|...+..
T Consensus 69 T~rI~lgt~V~-~--~~~~P~~~A~~~AtLd~lS~GR~~lGlG~G~~~~e~~ 117 (362)
T d1nqka_ 69 TQRLKFLVALR-P--SVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELA 117 (362)
T ss_dssp CSSCEEEEEEC-T--TTSCHHHHHHHHHHHHHHTTSCEEEEECCCCCHHHHH
T ss_pred cCeeEEEEEEc-C--CCCChHHHHHHHHHHHHHcCCCceeEEeecccHHHHh
Confidence 55788887643 3 3489999884 57899877 66655544433
No 10
>d1eara2 d.58.38.1 (A:75-142) Urease metallochaperone UreE, C-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Probab=8.02 E-value=60 Score=19.81 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=6.5
Q ss_pred HHHHHHHHH
Q 032156 116 LWLVTWHFG 124 (146)
Q Consensus 116 L~lvtWHlG 124 (146)
|--++||+|
T Consensus 15 l~~~a~hlG 23 (68)
T d1eara2 15 MGKMAFEIG 23 (68)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 445789988
Done!