BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032158
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 186 bits (472), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 105/137 (76%)
Query: 10 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPE 69
NA SGM V D K F EL+ K+ HR++++KI+ G P ++YE+FAA LP
Sbjct: 3 NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPA 62
Query: 70 NDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 129
++CRYA+YDFD+VT+ENCQKSKIFFIAW P +++R+KM+YA+SKDRF+RELDGI E+Q
Sbjct: 63 DECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQ 122
Query: 130 ATDPTEMDLEELRNRAN 146
ATDPTEMDL+ R+RAN
Sbjct: 123 ATDPTEMDLDVFRSRAN 139
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 13 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDC 72
SG+ V+D F EL+ HRYV FK++ GGP +YEDF + LPE DC
Sbjct: 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDC 60
Query: 73 RYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATD 132
RYA++D+++ + Q++KI FI W+P ++ I++KM+Y ++KD +++L GI E+QATD
Sbjct: 61 RYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATD 119
Query: 133 PTEMDLEELRNRA 145
E+ + + RA
Sbjct: 120 AAEISEDAVSERA 132
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 1/132 (0%)
Query: 14 GMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCR 73
G+ V+D F EL+ HRYV FK++ GGP +YEDF + LPE DCR
Sbjct: 2 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCR 61
Query: 74 YAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDP 133
YA++D+++ + Q++KI FI W+P ++ I++KM+Y ++KD +++L GI E+QATD
Sbjct: 62 YAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDA 120
Query: 134 TEMDLEELRNRA 145
E+ + + RA
Sbjct: 121 AEISEDAVSERA 132
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Query: 13 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDC 72
SG+ VAD S AF +L+ K +++++F ++ T SY+ F LPENDC
Sbjct: 4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDC 62
Query: 73 RYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQAT 131
YA+YDF+Y + ++SKI F WSP T+ +R+KM+YA+SKD RR L+G+ ++Q T
Sbjct: 63 LYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGT 122
Query: 132 DPTEMDLEELRNRAN 146
D +E+ + + R +
Sbjct: 123 DFSEVSYDSVLERVS 137
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 13 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDC 72
SG+ V+ AF EL+ K RYV+FK++ + ++ F LPE DC
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDC 62
Query: 73 RYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATD 132
RYA+YDF++ E ++KI FI+WSP + I++KM+Y++SKD RR GI +IQATD
Sbjct: 63 RYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATD 121
Query: 133 PTEMDLEELRNRAN 146
+E+ E + +
Sbjct: 122 FSEVAYETVLEKVT 135
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 60 YEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRR 119
Y F LP+ DCRYA+YD Y T E+ +K + FI W+P ++ +++KM+YA+SKD ++
Sbjct: 68 YATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKK 126
Query: 120 ELDGIHYEIQA 130
+L GI +E+QA
Sbjct: 127 KLTGIKHELQA 137
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 12 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPEND 71
SGMGV ++ F EL+ +K ++++FKI+ G + ++F ALP ND
Sbjct: 23 ASGMGVDENCVARFNELKIRKTVKWIVFKIENTKIVVEKDGKG----NADEFRGALPAND 78
Query: 72 CRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDG 123
CR+ VYD +KI F+ W P + ++ +M YA+SKD ++LDG
Sbjct: 79 CRFGVYDCG---------NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDG 121
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 58 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRF 117
+ ++ F LPE DCRYA+YD + T E+ +K ++ F W+P + +++KM+YA+SKD
Sbjct: 75 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAI 133
Query: 118 RRELDGIHYEIQATDPTEMD 137
+++ GI +E QA P +++
Sbjct: 134 KKKFQGIKHECQANGPEDLN 153
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 6/89 (6%)
Query: 58 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRF 117
+ Y F LP NDCRYA+YD Y T E+ +K + FI W+P ++ +++KM+YA+SKD
Sbjct: 66 DPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAI 124
Query: 118 RRELDGIHYEIQATDPTEMDLEELRNRAN 146
+++ GI +E Q L+++++R+
Sbjct: 125 KKKFTGIKHEWQVN-----GLDDIKDRST 148
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 11 ATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPEN 70
A SG+ VAD A +L+ KK RYVI I G +++ F A+ +N
Sbjct: 10 AMSGVSVADECVTALNDLRHKK-SRYVIMHI-VDQKSIAVKTIGERGANFDQFIEAIDKN 67
Query: 71 DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 130
YA +DF+Y T++ + K+ I+W+P + R KMLY++S+D G IQA
Sbjct: 68 VPCYAAFDFEYTTNDG-PRDKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQA 125
Query: 131 TDPTEMDLEELRNRA 145
D + +D EE+ +
Sbjct: 126 NDASGLDFEEISRKV 140
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 12 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYED-----FAAA 66
SG+ V+D F L+ K +++Y+I+KI+ + D
Sbjct: 7 VSGVNVSDECIYEFNRLKVKHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMRIKNN 66
Query: 67 LPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHY 126
L +CRY + D T E + +I+FI WSP S+ + KMLYA SK+ R+++GI
Sbjct: 67 LKNTECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFK 126
Query: 127 EIQAT-DPTEMDLEELR 142
++ T D E + EEL+
Sbjct: 127 SLEITCDINEFE-EELK 142
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 11 ATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPEN 70
A SG+ + + + A +L+ KK RYV+ I G + +Y D
Sbjct: 2 AISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTE 60
Query: 71 DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 130
Y +DF+Y ++ K+ I W P T+R R KM+Y+ S+D +G + IQA
Sbjct: 61 KPCYVAFDFEY-NDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQA 118
Query: 131 TDPTEMDLEEL 141
D + +D EE+
Sbjct: 119 NDESGLDAEEI 129
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 13 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYE-DFAA-ALPEN 70
+G+ ++ K F R + +Y + KI P++S+E D+ + LP
Sbjct: 5 TGIQASEDVKEIFA---RARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLL 61
Query: 71 DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIH 125
+ + Y + S+N Q + FIAWSP S +R KMLYA ++ ++E G H
Sbjct: 62 EDKQPCYVLFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGH 116
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 65 AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGI 124
A LP D + Y + S+N Q + F+AWSP S +R KMLYA ++ ++E G
Sbjct: 53 AVLPLLDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGG 112
Query: 125 H 125
H
Sbjct: 113 H 113
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 13 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPEND- 71
SG+ V D+ F ++ +K ++IF I + G + + + ++ +N+
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCGWIIFVIQNCEIIIH---SKGASTTLTELVQSIDKNNE 61
Query: 72 --CRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 129
C Y V+D SKI F ++ +S R +M YA+SK ++++G++
Sbjct: 62 IQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTS 112
Query: 130 ATDPTEMDLEELR 142
+ + D+ +L+
Sbjct: 113 VIESAQ-DVADLK 124
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 59 SYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFR 118
S E+ LPE R+ VY + YV + + FI SP + +M+YA SK+R
Sbjct: 59 SPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLV 118
Query: 119 R--ELDGIHYEIQATD 132
+ EL + +EI+ TD
Sbjct: 119 QTAELTKV-FEIRTTD 133
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 59 SYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFR 118
S E+ LPE R+ VY + YV + + FI SP + +M+YA SK+R
Sbjct: 65 SPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLV 124
Query: 119 R--ELDGIHYEIQATD 132
+ EL + +EI+ TD
Sbjct: 125 QTAELTKV-FEIRTTD 139
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 59 SYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFR 118
S E+ LPE R+ VY + YV + + FI SP + +M+YA SK+R
Sbjct: 49 SPEELKMELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLV 108
Query: 119 R--ELDGIHYEIQATD 132
+ EL + +EI+ TD
Sbjct: 109 QTAELTKV-FEIRTTD 123
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 13 SGMGVADHSKNAFTELQ-RKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPEND 71
SG+ V D+ F ++ RK ++IF I + G + + + ++ +N+
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCXGWIIFVIQNXCEIIIH--SKGASTTLTELVQSIDKNN 62
Query: 72 ---CRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIH 125
C Y V+D SKI F ++ +S R +M YA+SK ++++G++
Sbjct: 63 EIQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVN 110
>pdb|1V6F|A Chain A, Solution Structure Of Glia Maturation Factor-Beta From Mus
Musculus
Length = 151
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 59 SYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFR 118
S ++ LPE R+ VY + Y + + FI SP + +M+YA SK++
Sbjct: 59 SPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLV 118
Query: 119 R--ELDGIHYEIQATD 132
+ EL + +EI+ T+
Sbjct: 119 QTAELTKV-FEIRNTE 133
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
Length = 164
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 21 SKNAFTELQR--KKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYD 78
S++AF L++ KK YV +ID T D +P++ RY +
Sbjct: 25 SRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENT--ELRDLPKRIPKDSARYHFFL 82
Query: 79 FDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSK 114
+ + + +S +F + T IR +MLY++ K
Sbjct: 83 YKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCK 118
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
Mouse Twinfilin
Length = 166
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 21 SKNAFTELQR--KKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYD 78
S++AF L++ KK YV +ID T D +P++ RY +
Sbjct: 30 SRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENT--ELRDLPKRIPKDSARYHFFL 87
Query: 79 FDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSK 114
+ + + +S +F + T IR +MLY++ K
Sbjct: 88 YKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCK 123
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
Length = 142
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 21 SKNAFTELQR--KKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYD 78
S++AF L++ KK YV +ID T D +P++ RY +
Sbjct: 9 SRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENT--ELRDLPKRIPKDSARYHFFL 66
Query: 79 FDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSK 114
+ + + +S +F + T IR +MLY++ K
Sbjct: 67 YKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCK 102
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 14 GMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCR 73
M + ++ A +L++K V+ Y+ K+D T P + + + +P + R
Sbjct: 1 SMPLQPEAQRALQQLKQKMVN-YIQMKLDLERETIELVHTE-PTDVAQ-LPSRVPRDAAR 57
Query: 74 YAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGI----HYEI 128
Y + + + + +S +F + I+ +MLY++ K R LD + H EI
Sbjct: 58 YHFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRL---LDSVEQDFHLEI 113
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 13 SGMGVADHSKNAFTELQRKKVHRYVIFKID 42
G G D LQ +KVHR+ +F +D
Sbjct: 140 GGFGTLDELSEVLVLLQTEKVHRFPVFLLD 169
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
(Tm0262) From Thermotoga Maritima At 2.00 A Resolution
Length = 378
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 107 KMLYATSKDRFRRELDGIHYEIQ 129
K+++A +KD F R L+G+ +E+
Sbjct: 152 KVIFAAAKDEFMRNLNGVFWELH 174
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 55 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 108
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 93 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAYYSSGANDEV 147
Query: 109 LYATSKDRFRR 119
+ + + + R
Sbjct: 148 THRENHNAYHR 158
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 55 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 108
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 98 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAYYSSGANDEV 152
Query: 109 LYATSKDRFRR 119
+ + + + R
Sbjct: 153 THRENHNAYHR 163
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 55 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 108
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 98 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAYYSSGANDEV 152
Query: 109 LYATSKDRFRR 119
+ + + + R
Sbjct: 153 THRENHNAYHR 163
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 55 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 108
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 98 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAYYSSGANDEV 152
Query: 109 LYATSKDRFRR 119
+ + + + R
Sbjct: 153 THRENHNAYHR 163
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 55 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 108
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 98 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAYYSSGANDEV 152
Query: 109 LYATSKDRFRR 119
+ + + + R
Sbjct: 153 THRENHNAYHR 163
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 26.6 bits (57), Expect = 5.2, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 55 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 108
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 98 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAFYSSGANDEV 152
Query: 109 LYATSKDRFRR 119
+ + + + R
Sbjct: 153 THRENHNAYHR 163
>pdb|2BID|A Chain A, Human Pro-Apoptotic Protein Bid
Length = 197
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 109 LYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 146
L + S + FRRELD + +E+ P +EL+ N
Sbjct: 27 LQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTDGN 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,003,328
Number of Sequences: 62578
Number of extensions: 136441
Number of successful extensions: 262
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 33
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)