Query 032158
Match_columns 146
No_of_seqs 130 out of 1058
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 10:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 1.2E-45 2.6E-50 263.8 16.7 136 10-145 5-140 (141)
2 cd00013 ADF Actin depolymerisa 100.0 1.1E-39 2.4E-44 229.9 15.7 132 13-145 1-132 (132)
3 KOG1735 Actin depolymerizing f 100.0 2.1E-39 4.6E-44 229.0 11.6 136 11-146 1-141 (146)
4 PF00241 Cofilin_ADF: Cofilin/ 100.0 2.8E-38 6E-43 221.6 14.6 127 19-146 1-127 (127)
5 smart00102 ADF Actin depolymer 100.0 5.5E-37 1.2E-41 215.4 15.7 127 19-146 1-127 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 7.1E-35 1.5E-39 203.1 8.5 114 11-136 1-118 (122)
7 KOG1736 Glia maturation factor 99.9 4.3E-26 9.2E-31 155.9 12.6 138 8-146 1-141 (143)
8 KOG1747 Protein tyrosine kinas 99.9 6.8E-26 1.5E-30 175.8 12.2 129 15-146 177-311 (342)
9 KOG1747 Protein tyrosine kinas 99.9 3.5E-24 7.6E-29 166.3 9.9 127 10-145 2-135 (342)
10 KOG3655 Drebrins and related a 99.8 6.7E-19 1.4E-23 143.7 12.4 128 14-146 6-134 (484)
11 COG0081 RplA Ribosomal protein 80.0 5.5 0.00012 30.7 5.4 56 3-66 134-189 (228)
12 CHL00129 rpl1 ribosomal protei 58.1 30 0.00066 26.6 5.3 56 4-67 133-188 (229)
13 TIGR01169 rplA_bact ribosomal 48.9 53 0.0012 25.2 5.3 56 4-67 132-187 (227)
14 PRK05424 rplA 50S ribosomal pr 48.4 63 0.0014 24.8 5.7 56 4-67 133-188 (230)
15 PF05941 Chordopox_A20R: Chord 42.3 1.2E+02 0.0026 24.8 6.5 76 3-81 90-171 (334)
16 KOG2313 Stress-induced protein 38.8 47 0.001 22.3 3.1 33 99-135 64-99 (100)
17 COG1888 Uncharacterized protei 34.1 1.2E+02 0.0026 20.1 4.4 55 19-74 22-76 (97)
18 PF02680 DUF211: Uncharacteriz 33.1 44 0.00096 22.2 2.3 55 20-75 21-75 (95)
19 PF11341 DUF3143: Protein of u 32.0 36 0.00078 20.9 1.6 29 93-121 31-60 (63)
20 cd01271 Fe65_C Fe65 C-terminal 28.7 2.1E+02 0.0045 20.0 7.9 101 10-120 15-123 (124)
21 PF11663 Toxin_YhaV: Toxin wit 26.7 83 0.0018 22.4 3.0 27 73-106 80-107 (140)
22 PF14157 YmzC: YmzC-like prote 26.7 83 0.0018 19.3 2.6 18 36-53 41-58 (63)
23 KOG4037 Photoreceptor synaptic 26.7 2.1E+02 0.0045 21.5 5.2 66 16-81 59-137 (240)
24 TIGR03126 one_C_fae formaldehy 26.6 59 0.0013 23.7 2.2 32 93-124 112-143 (160)
25 KOG2130 Phosphatidylserine-spe 25.8 57 0.0012 26.7 2.2 41 10-51 189-229 (407)
26 KOG0444 Cytoskeletal regulator 24.9 1.6E+02 0.0034 27.0 4.9 49 71-122 527-575 (1255)
27 PF12663 DUF3788: Protein of u 23.3 98 0.0021 21.6 2.9 29 16-44 91-119 (133)
28 PRK04968 SecY interacting prot 23.0 1.7E+02 0.0036 21.8 4.1 33 37-69 140-177 (181)
29 TIGR03777 RPE4 Rickettsial pal 23.0 49 0.0011 17.4 0.9 11 1-11 1-11 (32)
30 PF05292 MCD: Malonyl-CoA deca 21.1 71 0.0015 26.3 2.0 35 57-97 118-153 (354)
31 PF13645 YkuD_2: L,D-transpept 20.2 1.4E+02 0.003 22.1 3.2 29 67-103 44-72 (176)
32 PTZ00248 eukaryotic translatio 20.1 4.8E+02 0.01 21.2 6.6 53 28-80 64-116 (319)
33 cd05703 S1_Rrp5_repeat_hs12_sc 20.1 1.2E+02 0.0026 18.4 2.5 31 21-51 40-70 (73)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=1.2e-45 Score=263.78 Aligned_cols=136 Identities=68% Similarity=1.162 Sum_probs=128.8
Q ss_pred ccccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCcee
Q 032158 10 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQK 89 (146)
Q Consensus 10 ~~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 89 (146)
|++|||+++++|.++|++|+.++.+|||+|+|+.++++|+|++++..+.+|+||++.||+++|||++|||++++.+|+++
T Consensus 5 m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~ 84 (141)
T PLN03216 5 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK 84 (141)
T ss_pred ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Confidence 55889999999999999999887789999999998889999987655678999999999999999999999998899999
Q ss_pred ecEEEEEEcCCCCChhhhhHhHHhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032158 90 SKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 145 (146)
Q Consensus 90 ~k~vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g~~~~i~a~d~~dl~~~~i~~k~ 145 (146)
++++||+|||++|++|.||+|||+|.+|++.|+|++++|||+|.+||+++.+.++|
T Consensus 85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~ 140 (141)
T PLN03216 85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRA 140 (141)
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987
No 2
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=1.1e-39 Score=229.90 Aligned_cols=132 Identities=54% Similarity=0.930 Sum_probs=123.6
Q ss_pred cCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeecE
Q 032158 13 SGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKI 92 (146)
Q Consensus 13 sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~ 92 (146)
||++++++|.+||++++.+++.+|++|+|+.++++|+++++++...++++|++.||+++|||++||+++.+. |+.++++
T Consensus 1 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~ 79 (132)
T cd00013 1 SGIKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKI 79 (132)
T ss_pred CCceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCE
Confidence 699999999999999998767999999999988899999987543589999999999999999999998766 7889999
Q ss_pred EEEEEcCCCCChhhhhHhHHhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032158 93 FFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 145 (146)
Q Consensus 93 vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g~~~~i~a~d~~dl~~~~i~~k~ 145 (146)
+||+|||++||+|.||+|||+|.+|++.++|+++++++++.+||+++.|.++|
T Consensus 80 vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 80 VFIYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEEEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999885
No 3
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=2.1e-39 Score=229.01 Aligned_cols=136 Identities=57% Similarity=1.029 Sum_probs=127.9
Q ss_pred cccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCC---CCCceEEEEEeeeecCC--
Q 032158 11 ATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALP---ENDCRYAVYDFDYVTSE-- 85 (146)
Q Consensus 11 ~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~---~~~pry~~~~~~~~~~~-- 85 (146)
+.||+.++|+|+.+|++|+.++.+|||+|+|+.+..+|++++.|.++.+|++|...|| .++|||++||+++.+..
T Consensus 1 ~aSGv~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g 80 (146)
T KOG1735|consen 1 MASGVAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESG 80 (146)
T ss_pred CCcceEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeeccc
Confidence 3689999999999999999988899999999998889999998888899999999999 99999999999998743
Q ss_pred CceeecEEEEEEcCCCCChhhhhHhHHhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032158 86 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 146 (146)
Q Consensus 86 ~~~~~k~vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g~~~~i~a~d~~dl~~~~i~~k~~ 146 (146)
+...+|++||.|||++||+|.||+|||+|++|+++|.|+++++||+|++|+.++.|.++|+
T Consensus 81 ~~~~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl~ 141 (146)
T KOG1735|consen 81 NCKKSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKLG 141 (146)
T ss_pred cceeeeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHhc
Confidence 4578999999999999999999999999999999999999999999999999999999874
No 4
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=2.8e-38 Score=221.56 Aligned_cols=127 Identities=43% Similarity=0.837 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeecEEEEEEc
Q 032158 19 DHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWS 98 (146)
Q Consensus 19 ~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~ 98 (146)
|||.++|++++.+++.+|++|+|+.++++|+++++|+...++++|.+.||+++|||++||+.+++. |+.+++++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 799999999999877999999999998899999987557899999999999999999999999866 6789999999999
Q ss_pred CCCCChhhhhHhHHhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032158 99 PSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 146 (146)
Q Consensus 99 P~~a~vk~kMlYsssk~~l~~~l~g~~~~i~a~d~~dl~~~~i~~k~~ 146 (146)
|++||+|+||+|||++.+|++.+++++.+++++|++||+++.|.+||.
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH-
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999974
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=5.5e-37 Score=215.40 Aligned_cols=127 Identities=46% Similarity=0.902 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeecEEEEEEc
Q 032158 19 DHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWS 98 (146)
Q Consensus 19 ~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~ 98 (146)
++|.++|++|+.++..+|++|+|+.++++|+|+.+|.++.++++|++.||+++|||++||++++++ ++.+++++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 479999999998777899999999988999999887556789999999999999999999998765 4678999999999
Q ss_pred CCCCChhhhhHhHHhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032158 99 PSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 146 (146)
Q Consensus 99 P~~a~vk~kMlYsssk~~l~~~l~g~~~~i~a~d~~dl~~~~i~~k~~ 146 (146)
|++||+|.||+||+++.+|++.|+|++..|++++.+||+++.|.++|.
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999874
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=7.1e-35 Score=203.06 Aligned_cols=114 Identities=25% Similarity=0.573 Sum_probs=100.9
Q ss_pred cccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCC---ceEEEEEeeeecCCCc
Q 032158 11 ATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPEND---CRYAVYDFDYVTSENC 87 (146)
Q Consensus 11 ~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~---pry~~~~~~~~~~~~~ 87 (146)
++|||+++++|.++|++|+.++.+|||+|+|++ ++|+|++.++ ..+|++|++.||+++ |||++|++.
T Consensus 1 m~SGi~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~-~~~~~e~~~~L~~~~~~~crY~vyd~~------- 70 (122)
T PTZ00152 1 MISGIRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGA-TTTLTELVGSIDKNDKIQCAYVVFDAV------- 70 (122)
T ss_pred CCCCcCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCC-CCCHHHHHHhccccCCCCceEEEEccC-------
Confidence 357999999999999999988789999999975 6899998876 468999999999988 999999873
Q ss_pred eeecEEEEEEcCCCCChhhhhHhHHhHHHHHHhcCCee-EEEEeCCcCCC
Q 032158 88 QKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIH-YEIQATDPTEM 136 (146)
Q Consensus 88 ~~~k~vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g~~-~~i~a~d~~dl 136 (146)
++++||+|||++|++|.||+|||+|.+|++.|+|++ +..|+++.+||
T Consensus 71 --~klvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~ 118 (122)
T PTZ00152 71 --NKIHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDV 118 (122)
T ss_pred --CCEEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhh
Confidence 479999999999999999999999999999999876 35566666665
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.94 E-value=4.3e-26 Score=155.93 Aligned_cols=138 Identities=21% Similarity=0.379 Sum_probs=121.3
Q ss_pred CcccccCcccCHHHHHHHHHHHhc-C--cceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEeeeecC
Q 032158 8 RPNATSGMGVADHSKNAFTELQRK-K--VHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTS 84 (146)
Q Consensus 8 ~~~~~sGi~vs~e~~~a~~~l~~~-~--~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~ 84 (146)
|++...-.+|+++..+.+++++-. + +..+++++|+.+...|+++..-=...+.+|+.+.||+++|||++|.|+++++
T Consensus 1 MS~~~~~~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~ 80 (143)
T KOG1736|consen 1 MSNSLVVCKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTD 80 (143)
T ss_pred CCcceeEEEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECccccc
Confidence 344444468999999999999865 2 4669999999998899998421135788999999999999999999999999
Q ss_pred CCceeecEEEEEEcCCCCChhhhhHhHHhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032158 85 ENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 146 (146)
Q Consensus 85 ~~~~~~k~vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g~~~~i~a~d~~dl~~~~i~~k~~ 146 (146)
||+...+++||||.|-+|+..++|+||++|.-+.+.. +.++-+++++-+|+++++++++|+
T Consensus 81 DGr~stPL~~Iyw~P~~~~~e~~MmYAgak~~~~~~~-~~~KvfEir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 81 DGRVSTPLCFIYWSPVGCKPEQQMMYAGAKNMLVQTA-ELTKVFEIRSTDDLTEEWLREKLE 141 (143)
T ss_pred CCcccccEEEEEecCccCCHHHHHHHHHHHHHHHHHh-hheEEEEecccccccHHHHHHHhh
Confidence 9999999999999999999999999999999999888 688899999999999999999874
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.93 E-value=6.8e-26 Score=175.77 Aligned_cols=129 Identities=22% Similarity=0.391 Sum_probs=115.2
Q ss_pred cccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeecEEE
Q 032158 15 MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFF 94 (146)
Q Consensus 15 i~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vf 94 (146)
+++++++.+|+++|+.++ .+||+|+||..+|+|.|..+.+ ..+++||...+|.+.|||+||.|.+++.+ ...+.++|
T Consensus 177 ~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~~-~~e~sdL~s~vP~d~prY~ff~~~ht~eG-D~~es~~F 253 (342)
T KOG1747|consen 177 FPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTDT-CTEPSDLPSRVPRDGPRYHFFLFKHTHEG-DPLESIVF 253 (342)
T ss_pred ecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccCC-CCChHHhhhhcCCCCCceEEEecccccCC-CCceeEEE
Confidence 478999999999999986 9999999999899999998753 57899999999999999999999998664 45779999
Q ss_pred EEEcCC-CCChhhhhHhHHhHHHHHHhcC---C--eeEEEEeCCcCCCCHHHHHhhhC
Q 032158 95 IAWSPS-TSRIRAKMLYATSKDRFRRELD---G--IHYEIQATDPTEMDLEELRNRAN 146 (146)
Q Consensus 95 I~w~P~-~a~vk~kMlYsssk~~l~~~l~---g--~~~~i~a~d~~dl~~~~i~~k~~ 146 (146)
||.||. +|+||+||+|||||..|.+.++ | +..+||+.|-+|||++.+.+.++
T Consensus 254 IYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~H 311 (342)
T KOG1747|consen 254 IYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEELH 311 (342)
T ss_pred EEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhhC
Confidence 999998 9999999999999999988776 4 45699999999999998887654
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.91 E-value=3.5e-24 Score=166.26 Aligned_cols=127 Identities=24% Similarity=0.478 Sum_probs=106.8
Q ss_pred ccccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCC----CCCHHHHHhc-CCCCCceEEEEEeeeecC
Q 032158 10 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGP----AESYEDFAAA-LPENDCRYAVYDFDYVTS 84 (146)
Q Consensus 10 ~~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~----~~~~~e~~~~-L~~~~pry~~~~~~~~~~ 84 (146)
..++||..++++.+.|++-+.++ .|.+.+.|++ +++.+..+.+. ..+|+.++.. |...+|||++|+.+.
T Consensus 2 S~QtGI~A~e~l~~~l~~~~~~k-~R~ikIvI~n--Eql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds--- 75 (342)
T KOG1747|consen 2 SHQTGIRATEALKKFLNEAKNGK-LRLIKIVIEN--EQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDS--- 75 (342)
T ss_pred CcccccchHHHHHHHHHhcccCc-eEEEEEEEec--ccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecC---
Confidence 35789999999999999999985 8888888876 57888766543 3567777765 467899999999973
Q ss_pred CCceeecEEEEEEcCCCCChhhhhHhHHhHHHHHHhcCC--eeEEEEeCCcCCCCHHHHHhhh
Q 032158 85 ENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDG--IHYEIQATDPTEMDLEELRNRA 145 (146)
Q Consensus 85 ~~~~~~k~vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g--~~~~i~a~d~~dl~~~~i~~k~ 145 (146)
+..+|+||.|+||++|||+|||||+||++|++++++ +..+.++++++||+...+.+.+
T Consensus 76 ---~~~~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l 135 (342)
T KOG1747|consen 76 ---KNAEWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSL 135 (342)
T ss_pred ---CCccEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhh
Confidence 455999999999999999999999999999999986 4568999999999988776543
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.80 E-value=6.7e-19 Score=143.70 Aligned_cols=128 Identities=17% Similarity=0.310 Sum_probs=115.1
Q ss_pred CcccCHHHHHHHHHHHhcC-cceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeecE
Q 032158 14 GMGVADHSKNAFTELQRKK-VHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKI 92 (146)
Q Consensus 14 Gi~vs~e~~~a~~~l~~~~-~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~ 92 (146)
+-.=..+|.++|+.+..+. ...|++|+++++...+.+..+| ..++++|++.+....-.|+++++. +.++...|+
T Consensus 6 ~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~--~~~~~e~~~df~~~kv~yg~~rv~---D~~s~l~Kf 80 (484)
T KOG3655|consen 6 TTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSG--EGGLEEFLGDFDSGKVMYGFCRVK---DPMSGLPKF 80 (484)
T ss_pred ccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeeeccc--cccHHHHhhhcccCceeEEEEEec---CcccCCcce
Confidence 4445677999999998876 5889999999987777776665 589999999999999999999997 456779999
Q ss_pred EEEEEcCCCCChhhhhHhHHhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032158 93 FFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 146 (146)
Q Consensus 93 vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g~~~~i~a~d~~dl~~~~i~~k~~ 146 (146)
|||.|||+++++-+|-.+|+.+..+++.|+|+|++|+|++.+||+.+.|+.+|+
T Consensus 81 vLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 81 VLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred EEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875
No 11
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=80.04 E-value=5.5 Score=30.71 Aligned_cols=56 Identities=32% Similarity=0.436 Sum_probs=34.9
Q ss_pred cccCCCcccccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhc
Q 032158 3 FRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAA 66 (146)
Q Consensus 3 ~~~~~~~~~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~ 66 (146)
=||| |.+.-+|. +++|+..++++++.|+ +-|+.++.. ++....|..+-+-++|.++
T Consensus 134 PRGl-MP~Pk~gT-vt~Dv~~av~~~K~g~----v~~R~dk~g--~ih~~iGk~sf~~e~L~eN 189 (228)
T COG0081 134 PRGL-MPNPKTGT-VTDDVAKAVEELKKGT----VEFRADKAG--VIHVPIGKVSFDDEKLAEN 189 (228)
T ss_pred CCCC-CCCCCCCC-CCcCHHHHHHHHhcCc----EEEEECCCc--eEEEEecCCCCCHHHHHHH
Confidence 3777 56654444 8999999999999985 667777643 3333344333344444433
No 12
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=58.08 E-value=30 Score=26.61 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=33.5
Q ss_pred ccCCCcccccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcC
Q 032158 4 RGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAAL 67 (146)
Q Consensus 4 ~~~~~~~~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L 67 (146)
||| |.+.-.|. +++++.+++++++.|+ +-|+.+..+ .| -...|..+-+-+++.+++
T Consensus 133 rGl-MP~pk~gT-vt~di~~~V~~~k~G~----v~~r~dk~g-~i-~~~VG~~~m~~~~l~eNi 188 (229)
T CHL00129 133 RGL-MPSPKSGT-VTTDLASAINEFKKGK----LEYRADKTG-IV-HVLFGKSNFTEEDLLENL 188 (229)
T ss_pred cCC-CCCCCCCC-ccccHHHHHHHHhcCc----EEEEecCCc-EE-EEEEeCCCCCHHHHHHHH
Confidence 677 66665565 6688999999999874 556666532 23 222343334445555443
No 13
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=48.91 E-value=53 Score=25.18 Aligned_cols=56 Identities=25% Similarity=0.404 Sum_probs=32.7
Q ss_pred ccCCCcccccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcC
Q 032158 4 RGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAAL 67 (146)
Q Consensus 4 ~~~~~~~~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L 67 (146)
||| |.+.-.|. +.+++.+++++++.|+ +-|+.+.. ..|. ...|..+=+.+++.+.+
T Consensus 132 rGl-MP~~k~gt-v~~di~~~I~~~k~g~----v~~r~~k~-g~i~-~~VG~~~m~~e~i~eNi 187 (227)
T TIGR01169 132 RGL-MPNPKTGT-VTADVAKAVKNAKKGQ----VEFRADKA-GNIH-ASIGKVSFDSEKLKENL 187 (227)
T ss_pred ccC-CCCCCCCC-ccccHHHHHHHHHcCc----EEEEeCCC-CEEE-EEEecCCCCHHHHHHHH
Confidence 677 66665665 5679999999998763 44665543 2232 22343334445555443
No 14
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=48.41 E-value=63 Score=24.82 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=32.0
Q ss_pred ccCCCcccccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcC
Q 032158 4 RGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAAL 67 (146)
Q Consensus 4 ~~~~~~~~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L 67 (146)
||| |.+.-.|. +.+++.+++++++.|+ +-|+.+.. ..|. ...|..+=+.+++.+.+
T Consensus 133 rGl-MP~pk~gT-v~~di~~~I~~~k~g~----v~~r~~k~-g~i~-~~IG~~~m~~e~i~eNi 188 (230)
T PRK05424 133 RGL-MPNPKTGT-VTMDVAKAVKEAKAGK----VEFRVDKA-GIIH-APIGKVSFDAEKLKENL 188 (230)
T ss_pred ccC-CCCCCCCC-cchhHHHHHHHHhcCc----EEEEecCC-CEEE-EEEeCCCCCHHHHHHHH
Confidence 676 55554444 6689999999999873 44666653 2232 22343334445555443
No 15
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=42.25 E-value=1.2e+02 Score=24.85 Aligned_cols=76 Identities=14% Similarity=0.062 Sum_probs=50.8
Q ss_pred cccCCCcccccCc--ccCHHHHHHHHHHHhcC-cceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhc---CCCCCceEEE
Q 032158 3 FRGLSRPNATSGM--GVADHSKNAFTELQRKK-VHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAA---LPENDCRYAV 76 (146)
Q Consensus 3 ~~~~~~~~~~sGi--~vs~e~~~a~~~l~~~~-~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~---L~~~~pry~~ 76 (146)
++| +|....||- ++++++.++.+.+-..- +.+++-|..=. +.-+++........+.+++.. ..-+-+.|+-
T Consensus 90 ~~G-sm~elgSG~~~~i~~~~k~~~d~i~~~~~di~FlRFv~f~--~~wilED~fS~~~~p~~~L~~a~~~Gl~~~p~l~ 166 (334)
T PF05941_consen 90 SKG-SMMELGSGNEVQIDEEMKEACDAILADYPDIEFLRFVYFK--NRWILEDAFSKYSSPIEILKLASEEGLNVVPYLR 166 (334)
T ss_pred ECC-cEEEecCCcccCCCHHHHHHHHHHHhhCCCceEEEEEEEc--CeEEEeeeccccCCHHHHHHHHHHHhhccCceEE
Confidence 467 777777774 68999999999997654 67777777665 467777765555556665432 2234556777
Q ss_pred EEeee
Q 032158 77 YDFDY 81 (146)
Q Consensus 77 ~~~~~ 81 (146)
.+.+-
T Consensus 167 i~V~~ 171 (334)
T PF05941_consen 167 IRVEE 171 (334)
T ss_pred EEEcc
Confidence 76653
No 16
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=38.76 E-value=47 Score=22.25 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=22.2
Q ss_pred CCCCChhhhhHhHHhHHHHHHhcC--Cee-EEEEeCCcCC
Q 032158 99 PSTSRIRAKMLYATSKDRFRRELD--GIH-YEIQATDPTE 135 (146)
Q Consensus 99 P~~a~vk~kMlYsssk~~l~~~l~--g~~-~~i~a~d~~d 135 (146)
+-+..-|.||+|. .|+++|. |+| ..|++..|+|
T Consensus 64 G~s~v~RHRlVy~----~L~eEl~~~gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 64 GLSLVKRHRLVYK----ALKEELAGTGVHALSIMAKTPSE 99 (100)
T ss_pred CccHHHHHHHHHH----HHHHHhhccceeEEEeeccCCCC
Confidence 3456679999994 4555554 466 5788777765
No 17
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.10 E-value=1.2e+02 Score=20.12 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceE
Q 032158 19 DHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRY 74 (146)
Q Consensus 19 ~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry 74 (146)
.|+...+.+|..=...|..+..||.+++.+.+.-.|. +-+|+++...+.+-.+.-
T Consensus 22 ve~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~-~ldydei~~~iE~~Gg~I 76 (97)
T COG1888 22 VELALELSKLEGVEGVNITVTEIDVETENLKITIEGT-NLDYDEIEEVIEELGGAI 76 (97)
T ss_pred HHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcC-CCCHHHHHHHHHHcCCee
Confidence 4556666666543468889999998887776665563 689999988876655543
No 18
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=33.11 E-value=44 Score=22.23 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEE
Q 032158 20 HSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYA 75 (146)
Q Consensus 20 e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~ 75 (146)
++..++.++..-...+..+..+|.+++.+.+.=.|. +.+|+++.+.+..-.+.-+
T Consensus 21 e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~-~id~d~i~~~Ie~~Gg~IH 75 (95)
T PF02680_consen 21 ELAKALSELEGVDGVNITVVEVDVETENLKITIEGD-DIDFDEIKEAIEELGGVIH 75 (95)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEES-SE-HHHHHHHHHHTT-EEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeC-CCCHHHHHHHHHHcCCeEE
Confidence 445555555443458888999999888777766664 6899999988766555433
No 19
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=32.03 E-value=36 Score=20.90 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=25.2
Q ss_pred EEEEEcCCC-CChhhhhHhHHhHHHHHHhc
Q 032158 93 FFIAWSPST-SRIRAKMLYATSKDRFRREL 121 (146)
Q Consensus 93 vfI~w~P~~-a~vk~kMlYsssk~~l~~~l 121 (146)
+.|.|.+.+ ..++...-|+-+++.+.+++
T Consensus 31 L~V~y~~~g~~~~~rsF~YsLSR~DvE~Ai 60 (63)
T PF11341_consen 31 LVVRYLQSGPQDIQRSFPYSLSREDVEAAI 60 (63)
T ss_pred EEEEEccCCCcccEEeccCcCCHHHHHHHH
Confidence 678888888 88888899999999998865
No 20
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.74 E-value=2.1e+02 Score=20.01 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=53.6
Q ss_pred ccccCcccCHHHHHHHHHHHhcC-cceEEEEEEeCCccEEEEeeCCC-CC------CCHHHHHhcCCCCCceEEEEEeee
Q 032158 10 NATSGMGVADHSKNAFTELQRKK-VHRYVIFKIDEKKKEVVVEKTGG-PA------ESYEDFAAALPENDCRYAVYDFDY 81 (146)
Q Consensus 10 ~~~sGi~vs~e~~~a~~~l~~~~-~~~~vi~~i~~~~~~i~l~~~~~-~~------~~~~e~~~~L~~~~pry~~~~~~~ 81 (146)
..+.|+.+= .+|++.++... ..+|+-..++.....|.+.+..+ .. ..+=-|..- +.+.--|++.- .
T Consensus 15 ~~p~Gmdvl---n~AI~~l~~~~~~~~w~~V~vsvaps~v~v~~~~~~~~~l~ecrVr~lSF~Gv-gKd~k~fafI~-~- 88 (124)
T cd01271 15 DKPTGMEIL---NSAIDNLMSSSNKEDWLSVNVNVAPSTITVISEKNEEEVLVECRVRYLSFLGI-GKDVHTCAFIM-D- 88 (124)
T ss_pred cCCccHHHH---HHHHHHHHhcCCcccCceEEEEeCCceEEEEccCccceeeeeeeEEEeccccC-CCCccEEEEEE-e-
Confidence 345677664 44555554332 34566666554445666544321 00 011112221 22333444443 1
Q ss_pred ecCCCceeecEEEEEEcCCCCChhhhhHhHHhHHHHHHh
Q 032158 82 VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRE 120 (146)
Q Consensus 82 ~~~~~~~~~k~vfI~w~P~~a~vk~kMlYsssk~~l~~~ 120 (146)
+ +...=..+++||+.+|..-.+++=+++...-++.
T Consensus 89 ~----~~~~f~ChVF~ce~~A~~ls~av~aAc~lrYQkc 123 (124)
T cd01271 89 T----GNQRFECHVFWCEPNAGNVSKAVEAACKLRYQKC 123 (124)
T ss_pred c----CCCcEEEEEEEecCChHHHHHHHHHHHHHHHhhc
Confidence 1 1345668999999999888888888777655543
No 21
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=26.74 E-value=83 Score=22.44 Aligned_cols=27 Identities=37% Similarity=0.768 Sum_probs=19.5
Q ss_pred eE-EEEEeeeecCCCceeecEEEEEEcCCCCChhh
Q 032158 73 RY-AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRA 106 (146)
Q Consensus 73 ry-~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 106 (146)
|| .||||. ..+|+|++.|+-|....|.
T Consensus 80 ryRLFFRy~-------s~skiIv~aWvNDe~tlR~ 107 (140)
T PF11663_consen 80 RYRLFFRYD-------SESKIIVYAWVNDEQTLRA 107 (140)
T ss_pred eeeEEEEec-------CccCEEEEEEeCCCcchhh
Confidence 55 456664 2569999999998877663
No 22
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=26.74 E-value=83 Score=19.28 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=14.6
Q ss_pred EEEEEEeCCccEEEEeeC
Q 032158 36 YVIFKIDEKKKEVVVEKT 53 (146)
Q Consensus 36 ~vi~~i~~~~~~i~l~~~ 53 (146)
.=||+++.++++|+|.+.
T Consensus 41 iKIfkyd~~tNei~L~KE 58 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLKKE 58 (63)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEe
Confidence 347999999999998764
No 23
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=26.70 E-value=2.1e+02 Score=21.49 Aligned_cols=66 Identities=23% Similarity=0.335 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHHHHhcC---------cceEEEEEEeC-CccEEEEeeCCCCCCCHHHH---HhcCCCCCceEEEEEeee
Q 032158 16 GVADHSKNAFTELQRKK---------VHRYVIFKIDE-KKKEVVVEKTGGPAESYEDF---AAALPENDCRYAVYDFDY 81 (146)
Q Consensus 16 ~vs~e~~~a~~~l~~~~---------~~~~vi~~i~~-~~~~i~l~~~~~~~~~~~e~---~~~L~~~~pry~~~~~~~ 81 (146)
+|.++-.-.++.+-.+- ++.+.-|+|-+ +++++-.+-..++..+-+.+ .+.|.++..||+=|+|..
T Consensus 59 ~itP~dVL~L~~IT~dyLCSp~aNvy~IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~a~ae~lspnagRyVRYqFtP 137 (240)
T KOG4037|consen 59 PITPEDVLGLQRITGDYLCSPEANVYKIDFTRFKIRDLDSGTVLFEIAKPPVETEERLPANAEDLSPNAGRYVRYQFTP 137 (240)
T ss_pred CCChHHhhccccccCCceeCcccceEEeeeEEEEEeeccCCcEEEEecCCCCcchhhcchhhhccCCcccceEEEeech
Confidence 35555555555553331 14466677754 44444443332322222223 356788999999998863
No 24
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=26.61 E-value=59 Score=23.72 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChhhhhHhHHhHHHHHHhcCCe
Q 032158 93 FFIAWSPSTSRIRAKMLYATSKDRFRRELDGI 124 (146)
Q Consensus 93 vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g~ 124 (146)
|||.|--+.-.--.+--|.++|.++++.+.+.
T Consensus 112 Vfi~p~a~D~~kiy~~NY~ATKlAI~rAm~~~ 143 (160)
T TIGR03126 112 VFIHPEAKDDRKIYKYNYEATKLAIKRAMEGE 143 (160)
T ss_pred EEeccccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68888655444445667999999999998763
No 25
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=25.80 E-value=57 Score=26.74 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=31.6
Q ss_pred ccccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEe
Q 032158 10 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVE 51 (146)
Q Consensus 10 ~~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~ 51 (146)
.+.+||.|+|..-.|++.|-.|+ .||++|--....+-|++.
T Consensus 189 rSGtsiHIDPlgTSAWNtll~Gh-KrW~LfPp~~p~~lvkv~ 229 (407)
T KOG2130|consen 189 RSGTSIHIDPLGTSAWNTLLQGH-KRWVLFPPGTPPELVKVT 229 (407)
T ss_pred CCCceeEECCcchHHHHHHhhcc-ceeEEcCCCCCCCceeec
Confidence 34457889999999999999986 789998766554555543
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=24.85 E-value=1.6e+02 Score=27.05 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=38.3
Q ss_pred CceEEEEEeeeecCCCceeecEEEEEEcCCCCChhhhhHhHHhHHHHHHhcC
Q 032158 71 DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELD 122 (146)
Q Consensus 71 ~pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~kMlYsssk~~l~~~l~ 122 (146)
.-||++..-.. +.+..-.|-..||+++.|..-.+|--|-+.-.+++.|+
T Consensus 527 aDcYiVLKT~~---ddsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 527 ADCYIVLKTTR---DDSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred ccEEEEEEeec---ccccccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 44799987553 22345678889999999999999988888888888775
No 27
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=23.34 E-value=98 Score=21.60 Aligned_cols=29 Identities=3% Similarity=0.221 Sum_probs=24.1
Q ss_pred ccCHHHHHHHHHHHhcCcceEEEEEEeCC
Q 032158 16 GVADHSKNAFTELQRKKVHRYVIFKIDEK 44 (146)
Q Consensus 16 ~vs~e~~~a~~~l~~~~~~~~vi~~i~~~ 44 (146)
.+++.+++.|++-+..+.-+|+.|.+..+
T Consensus 91 ~~s~~~~~~~~~~~~~~~GkWl~~~V~~~ 119 (133)
T PF12663_consen 91 DLSPYVQELYDEAKTYGDGKWLMIEVRSE 119 (133)
T ss_pred hcCHHHHHHHHhCCCCCCCcEEEEEeCCh
Confidence 57889999999888776788999998763
No 28
>PRK04968 SecY interacting protein Syd; Provisional
Probab=23.04 E-value=1.7e+02 Score=21.85 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=21.9
Q ss_pred EEEEEeCCccEEEEeeCCCC-----CCCHHHHHhcCCC
Q 032158 37 VIFKIDEKKKEVVVEKTGGP-----AESYEDFAAALPE 69 (146)
Q Consensus 37 vi~~i~~~~~~i~l~~~~~~-----~~~~~e~~~~L~~ 69 (146)
-++.+++.+.+|.++.-|.. ..++.+|++.|.+
T Consensus 140 ~~isv~N~sGeV~lE~~G~~~r~vLA~sL~eFL~~L~P 177 (181)
T PRK04968 140 EVISVCNLSGEVILETLGTRKRTVLAPSLAEFLNQLEP 177 (181)
T ss_pred eEEEEECCCCeEEEEeCCCCcceehhhCHHHHHHhCCc
Confidence 34555666667777766542 3588899998854
No 29
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=22.97 E-value=49 Score=17.43 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=7.9
Q ss_pred CCcccCCCccc
Q 032158 1 MSFRGLSRPNA 11 (146)
Q Consensus 1 ~~~~~~~~~~~ 11 (146)
||-|||....+
T Consensus 1 mSsRgLtTgSs 11 (32)
T TIGR03777 1 MSSRGLTTGSS 11 (32)
T ss_pred CCccccccccc
Confidence 78889866554
No 30
>PF05292 MCD: Malonyl-CoA decarboxylase (MCD); InterPro: IPR007956 This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidised. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK) [].; GO: 0050080 malonyl-CoA decarboxylase activity, 0006633 fatty acid biosynthetic process; PDB: 2YGW_B.
Probab=21.15 E-value=71 Score=26.33 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=24.1
Q ss_pred CCCHHHHHhcCCCC-CceEEEEEeeeecCCCceeecEEEEEE
Q 032158 57 AESYEDFAAALPEN-DCRYAVYDFDYVTSENCQKSKIFFIAW 97 (146)
Q Consensus 57 ~~~~~e~~~~L~~~-~pry~~~~~~~~~~~~~~~~k~vfI~w 97 (146)
-.+|+||...|.+. --||+||....+ ..++|||.-
T Consensus 118 i~~w~DLkrRL~~~dRRcfaffHp~mP------~ePLIfveV 153 (354)
T PF05292_consen 118 IRSWDDLKRRLGPDDRRCFAFFHPAMP------DEPLIFVEV 153 (354)
T ss_dssp --SHHHHHHHCSTT-EEEEEEEETTCT------T--SEEEEE
T ss_pred ccCHHHHHHHhchhhhhhheeecCCCC------CCCeeeeHH
Confidence 36899999999875 888999976543 457777763
No 31
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=20.20 E-value=1.4e+02 Score=22.10 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=23.0
Q ss_pred CCCCCceEEEEEeeeecCCCceeecEEEEEEcCCCCC
Q 032158 67 LPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSR 103 (146)
Q Consensus 67 L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a~ 103 (146)
+|..++||.|+|+. ..++++=+||--+..
T Consensus 44 ~pS~~~R~~v~Dl~--------~~~~l~~~~VaHG~g 72 (176)
T PF13645_consen 44 KPSGEKRFFVIDLK--------KGKLLYNTLVAHGRG 72 (176)
T ss_pred CCCCCCeEEEEECC--------CCEEEEeeeeecccC
Confidence 67889999999996 457777788876553
No 32
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=20.08 E-value=4.8e+02 Score=21.20 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=39.7
Q ss_pred HHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEee
Q 032158 28 LQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFD 80 (146)
Q Consensus 28 l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~ 80 (146)
++.|......+++++.++..|.|....-...+|+++.+..+.........+.-
T Consensus 64 vkvGd~v~vkVl~VD~ekg~IdLS~K~v~~~pw~~~~e~~~~g~~v~~~V~~i 116 (319)
T PTZ00248 64 IRVGRHEVVVVLRVDKEKGYIDLSKKRVSPEDIEACEEKFSKSKKVHSIMRHI 116 (319)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEEEeeecccchHHHHHHhCcCCCEEEEEEEEc
Confidence 46677788999999988888888654333468999999998777666666554
No 33
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.07 E-value=1.2e+02 Score=18.44 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCcceEEEEEEeCCccEEEEe
Q 032158 21 SKNAFTELQRKKVHRYVIFKIDEKKKEVVVE 51 (146)
Q Consensus 21 ~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~ 51 (146)
..+.-+.++.|....+.++.+|.++..|.|.
T Consensus 40 ~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls 70 (73)
T cd05703 40 LEHPEKKFPIGQALKAKVVGVDKEHKLLRLS 70 (73)
T ss_pred ccCHHHhCCCCCEEEEEEEEEeCCCCEEEEE
Confidence 3345566777877889999999988888875
Done!