BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032159
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 196 bits (498), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 107/140 (76%), Gaps = 1/140 (0%)
Query: 2 SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
S GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F
Sbjct: 1 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 60
Query: 61 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+L
Sbjct: 61 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 120
Query: 121 LDQPNPADPAQTDGYQLFIQ 140
L++PN DPAQ + Y ++ Q
Sbjct: 121 LNEPNIQDPAQAEAYTIYCQ 140
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 196 bits (497), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 91/141 (64%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
Query: 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
++ GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F
Sbjct: 1 LNMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 60
Query: 60 PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+
Sbjct: 61 KLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQE 120
Query: 120 LLDQPNPADPAQTDGYQLFIQ 140
LL++PN DPAQ + Y ++ Q
Sbjct: 121 LLNEPNIQDPAQAEAYTIYCQ 141
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 196 bits (497), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 107/140 (76%), Gaps = 1/140 (0%)
Query: 2 SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
S GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F
Sbjct: 2 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 61 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+L
Sbjct: 62 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
Query: 121 LDQPNPADPAQTDGYQLFIQ 140
L++PN DPAQ + Y ++ Q
Sbjct: 122 LNEPNIQDPAQAEAYTIYCQ 141
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 195 bits (496), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 107/140 (76%), Gaps = 1/140 (0%)
Query: 2 SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
S GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F
Sbjct: 5 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 64
Query: 61 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+L
Sbjct: 65 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 124
Query: 121 LDQPNPADPAQTDGYQLFIQ 140
L++PN DPAQ + Y ++ Q
Sbjct: 125 LNEPNIQDPAQAEAYTIYCQ 144
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 195 bits (495), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTDGYQLFIQ 140
+PN DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQ 140
+PN DPAQ + Y ++ Q
Sbjct: 125 EPNIQDPAQAEAYTIYCQ 142
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 192 bits (489), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQ 140
+PN PAQ + Y ++ Q
Sbjct: 125 EPNIQSPAQAEAYTIYCQ 142
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 192 bits (489), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHP VYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQ 140
+PN DPAQ + Y ++ Q
Sbjct: 125 EPNIQDPAQAEAYTIYCQ 142
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 192 bits (488), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQ 140
+PN PAQ + Y ++ Q
Sbjct: 125 EPNIQAPAQAEAYTIYCQ 142
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 192 bits (487), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNV PSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQ 140
+PN DPAQ + Y ++ Q
Sbjct: 125 EPNIQDPAQAEAYTIYCQ 142
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 191 bits (486), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTV LSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTDGYQLFIQ 140
+PN DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 191 bits (485), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +DYPS PPKCKF FHPNVYPSGTV LSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTDGYQLFIQ 140
+PN DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYXQ 139
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 184 bits (466), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
Query: 2 SGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFP 60
S + RL EERK WRK+HP GF AKP K DGS++L WE IPGK GT+W GG +P
Sbjct: 2 SMSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 61
Query: 61 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
+T+ + +YPSKPPK KFP GF+HPNVYPSGT+CLSILNED WRPAIT+KQI++G+QDL
Sbjct: 62 ITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDL 121
Query: 121 LDQPNPADPAQTDGYQLF 138
LD PNP PAQ ++ F
Sbjct: 122 LDSPNPNSPAQEPAWRSF 139
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 184 bits (466), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 105/136 (77%), Gaps = 1/136 (0%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
+ + RL EERK WR++HP GF AKP ++ DG ++LM W+ IPGK T WEGG + LT
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F E+YP++PPKC+F FHPNVYPSGTVCLSILNE+ GW+PAIT+KQIL+GIQDLLD
Sbjct: 68 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 127
Query: 123 QPNPADPAQTDGYQLF 138
PN A PAQT+ Y +F
Sbjct: 128 DPNIASPAQTEAYTMF 143
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 183 bits (465), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 102/130 (78%), Gaps = 1/130 (0%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED 68
RL EERK WRK+HP GF AKP K DGS++L WE IPGK GT+W GG +P+T+ + +
Sbjct: 8 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67
Query: 69 YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
YPSKPPK KFP GF+HPNVYPSGT+CLSILNED WRPAIT+KQI++G+QDLLD PNP
Sbjct: 68 YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNS 127
Query: 129 PAQTDGYQLF 138
PAQ ++ F
Sbjct: 128 PAQEPAWRSF 137
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 112 bits (279), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
AR RL + K +++ P G P+ N+M+W +I G T W+GG F L+L FS
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
EDYP+KPP +F FHPN+Y G++CL IL N W P V IL IQ LL PNP
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNP 118
Query: 127 ADPAQTDGYQLF 138
PA ++ +++
Sbjct: 119 NSPANSEAARMY 130
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
AR RL + K +++ P G P N+M W +I G GT +E G F L + FS
Sbjct: 5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
E+YP+KPP +F FHPNVY G++CL IL N W P V IL IQ LLD+PNP
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNP 118
Query: 127 ADPAQTDGYQLF 138
PA + QL+
Sbjct: 119 NSPANSQAAQLY 130
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 77/132 (58%), Gaps = 6/132 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
+R RL + K +++ P G P T+D N++ WE II G T +E G F L+L F+
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
E+YP+KPP KF FHPNVY G++CL IL N W P V IL IQ LLD+PNP
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDVAAILTSIQSLLDEPNP 118
Query: 127 ADPAQTDGYQLF 138
PA + QL+
Sbjct: 119 NSPANSLAAQLY 130
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 77/132 (58%), Gaps = 6/132 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
+R RL + K +++ P G P T+D N++ WE II G T +E G F L+L F+
Sbjct: 8 SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
E+YP+KPP KF FHPNVY G++CL IL N W P V IL IQ LLD+PNP
Sbjct: 64 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDVAAILTSIQSLLDEPNP 121
Query: 127 ADPAQTDGYQLF 138
PA + QL+
Sbjct: 122 NSPANSLAAQLY 133
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
AR RL + K +++ P G A P N+M+W +I G T +E G F L L F
Sbjct: 5 ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
E+YP+KPP KF FHPNVY +G +CL IL N W P V IL IQ L + PNP
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ--NRWTPTYDVASILTSIQSLFNDPNP 118
Query: 127 ADPAQTDGYQLF 138
A PA + LF
Sbjct: 119 ASPANVEAATLF 130
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 14/139 (10%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
A+ RL +E + K+ P G VA P++++ N+ IW+C+I G T + G F L F
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEFP 61
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILV 115
+DYP PPK F HPN+YP+G VC+SIL+ + W P +V++IL+
Sbjct: 62 KDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILL 121
Query: 116 GIQDLLDQPNPADPAQTDG 134
+ +L +PN A D
Sbjct: 122 SVMSMLSEPNIESGANIDA 140
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G A RL E K N P G VA P ++ N WE +I G T +E G FP L
Sbjct: 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 57
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
F DYP PPK +F FHPN+YP G VC+SIL + W P +V++
Sbjct: 58 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 117
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQL 137
IL+ + +L +PN A D ++
Sbjct: 118 ILLSVVSMLAEPNDESGANVDASKM 142
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 93.2 bits (230), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G A RL E K N P G VA P ++ N WE +I G T +E G FP L
Sbjct: 5 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 61
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
F DYP PPK +F FHPN+YP G VC+SIL + W P +V++
Sbjct: 62 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 121
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQL 137
IL+ + +L +PN A D ++
Sbjct: 122 ILLSVVSMLAEPNDESGANVDASKM 146
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 93.2 bits (230), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G A RL E K N P G VA P ++ N WE +I G T +E G FP L
Sbjct: 7 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 63
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
F DYP PPK +F FHPN+YP G VC+SIL + W P +V++
Sbjct: 64 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 123
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQL 137
IL+ + +L +PN A D ++
Sbjct: 124 ILLSVVSMLAEPNDESGANVDASKM 148
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 93.2 bits (230), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G A RL E K N P G VA P ++ N WE +I G T +E G FP L
Sbjct: 4 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 60
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
F DYP PPK +F FHPN+YP G VC+SIL + W P +V++
Sbjct: 61 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 120
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQL 137
IL+ + +L +PN A D ++
Sbjct: 121 ILLSVVSMLAEPNDESGANVDASKM 145
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E +++ P A P D L W+ I G + ++GG F LT+
Sbjct: 1 GAMALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTV 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++CL IL + W PA+TV ++L+ I LL
Sbjct: 57 HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLCD 114
Query: 124 PNPADPAQTDGYQLF 138
PNP DP D Q++
Sbjct: 115 PNPDDPLVPDIAQIY 129
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E + +++ P A P D L W+ I G + + ++GG F LT+
Sbjct: 4 GSMALKRIQKELQDLQRDPPAQCSAGPVGDD----LFHWQATIMGPSDSPYQGGVFFLTI 59
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++CL IL + W PA+TV ++L+ I LL
Sbjct: 60 HFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLCD 117
Query: 124 PNPADPAQTDGYQLF 138
PNP DP D ++
Sbjct: 118 PNPDDPLVPDIAHIY 132
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Query: 1 MSG----GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG 56
MSG G +A R+ +E +++ P A P D L W+ I G + ++G
Sbjct: 10 MSGLVPRGSMALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQG 65
Query: 57 GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
G F LT++F DYP KPPK F +HPN+ +G++CL IL + W PA+TV ++L+
Sbjct: 66 GVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLS 123
Query: 117 IQDLLDQPNPADPAQTDGYQLF 138
I LL PNP DP D Q++
Sbjct: 124 ICSLLCDPNPDDPLVPDIAQIY 145
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E +++ P A P D L W+ I G + ++GG F LT++F
Sbjct: 7 MALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTVHF 62
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
DYP KPPK F +HPN+ +G++CL IL + W PA+TV ++L+ I LL PN
Sbjct: 63 PTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLCDPN 120
Query: 126 PADPAQTDGYQLF 138
P DP D Q++
Sbjct: 121 PDDPLVPDIAQIY 133
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ E K+ P A P D L W+ I G + + GG F L+++F
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGDD----LFHWQATIMGPADSPYAGGVFFLSIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
DYP KPPK F +HPN+ +G++CL IL + W PA+T+ ++L+ I LL PN
Sbjct: 57 PTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSISSLLTDPN 114
Query: 126 PADP 129
P DP
Sbjct: 115 PDDP 118
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
PNP DP
Sbjct: 115 PNPDDP 120
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 4 GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 59
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 60 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 117
Query: 124 PNPADP 129
PNP DP
Sbjct: 118 PNPDDP 123
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 1 MSG----GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG 56
MSG G +A R+ +E ++ P A P D + W+ I G + ++G
Sbjct: 10 MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQG 65
Query: 57 GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
G F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+
Sbjct: 66 GVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLS 123
Query: 117 IQDLLDQPNPADP 129
I LL PNP DP
Sbjct: 124 ICSLLCDPNPDDP 136
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 1 GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
PNP DP
Sbjct: 115 PNPDDP 120
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
G +A R+ +E +++ P A P D L W+ I G + ++GG F LT
Sbjct: 4 SGSMALKRIQKELSDLQRDPPAHCRAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLT 59
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
++F DYP KPPK F +HPN+ +G++ L IL W PA+TV ++L+ I LL
Sbjct: 60 VHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQ--WSPALTVSKVLLSICSLLC 117
Query: 123 QPNPADPAQTDGYQLF 138
PNP DP D Q++
Sbjct: 118 DPNPDDPLVPDIAQIY 133
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
GI R R+T+E + P G +A P + N + +I G GT +EGG + L L+
Sbjct: 1 GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
E YP +PPK +F +HPN+ G +CL IL + W PA+ ++ +L+ IQ LL P
Sbjct: 56 LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSSP 113
Query: 125 NPADPAQTDGYQLFIQ 140
P DP + + F Q
Sbjct: 114 EPDDPLDSKVAEHFKQ 129
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WGPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
PNP DP
Sbjct: 115 PNPDDP 120
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
GI R R+T+E + P G +A P + N + +I G GT +EGG + L L+
Sbjct: 1 GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
E YP +PPK +F +HPN+ G +CL IL + W PA+ ++ +L+ IQ LL P
Sbjct: 56 LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSSP 113
Query: 125 NPADPAQTDGYQLFIQ 140
P DP + + F Q
Sbjct: 114 EPDDPLDSKVAEHFKQ 129
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 6/127 (4%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
G +A R+ +E + ++ P A P D L W+ I G + ++GG F LT
Sbjct: 1 GSHMALKRIQKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPESPYQGGVFFLT 56
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
++F DYP KPPK F +HPN+ +G++CL IL + W PA+T+ ++L+ I LL
Sbjct: 57 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLLC 114
Query: 123 QPNPADP 129
PNP DP
Sbjct: 115 DPNPDDP 121
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
A R+ +E K+ P A P D + W+ I G + + GG F L ++F
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDD----MFHWQATIMGPEDSPYSGGVFFLNIHFP 77
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
DYP KPPK F +HPN+ G +CL IL + W PA+T+ ++L+ I LL PNP
Sbjct: 78 SDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQ--WSPALTISKVLLSISSLLTDPNP 135
Query: 127 ADP 129
DP
Sbjct: 136 DDP 138
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
G A R+ +E ++ P A P D + W+ I G + ++GG F LT++
Sbjct: 2 GSALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIH 57
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL P
Sbjct: 58 FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDP 115
Query: 125 NPADP 129
NP DP
Sbjct: 116 NPDDP 120
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
+A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 9 NSMALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++CL IL + W PA+T+ ++L+ I LL
Sbjct: 65 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLLCD 122
Query: 124 PNPADP 129
PNP DP
Sbjct: 123 PNPDDP 128
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
+A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 9 NSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 65 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 122
Query: 124 PNPADP 129
PNP DP
Sbjct: 123 PNPDDP 128
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++CL L W PA+T+ ++L+ I LL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
PNP DP
Sbjct: 115 PNPDDP 120
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ G + ++GG F LT+
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATAMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
PNP DP
Sbjct: 115 PNPDDP 120
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 64
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++L+ I LL PN
Sbjct: 65 PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPN 122
Query: 126 PADP 129
P DP
Sbjct: 123 PDDP 126
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFP 56
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
DYP KPPK F +HPN+ +G++CL IL + W PA+T+ ++L+ I LL PNP
Sbjct: 57 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLLCDPNP 114
Query: 127 ADP 129
DP
Sbjct: 115 DDP 117
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
DYP KPPK F +HPN+ +G++CL IL + W PA+T+ ++L+ I LL PN
Sbjct: 57 PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLLCDPN 114
Query: 126 PADP 129
P DP
Sbjct: 115 PDDP 118
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+F DYP KPPK F +HPN+ +G++ L IL + W PA+T+ ++L+ I LL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR--SQWSPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
PNP DP
Sbjct: 115 PNPDDP 120
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT
Sbjct: 1 AGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLT 56
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
++F DYP KPPK F +HPN+ +G++ L IL W PA+T+ ++L+ I LL
Sbjct: 57 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPALTISKVLLSICSLLC 114
Query: 123 QPNPADP 129
PNP DP
Sbjct: 115 DPNPDDP 121
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 1 MSG----GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG 56
MSG G +A R+ +E ++ P A P D + W+ I G + ++G
Sbjct: 10 MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQG 65
Query: 57 GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
G F LT++F DYP KPPK F +HPN+ +G++ L IL W PA+T+ ++L+
Sbjct: 66 GVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQ--WSPALTISKVLLS 123
Query: 117 IQDLLDQPNPADP 129
I LL PNP DP
Sbjct: 124 ICSLLCDPNPDDP 136
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 2 SGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
S G+ R + E ++ + P G A+P+ N + +I G + +EGG F L
Sbjct: 5 SMAGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKL 59
Query: 62 TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
L+ E+YP PK +F +HPNV G +CL IL + W PA+ ++ +L+ IQ LL
Sbjct: 60 ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALL 117
Query: 122 DQPNPADPAQTD 133
PNP DP D
Sbjct: 118 SAPNPDDPLAND 129
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLS 96
N W I G GT +EGG+F L + DYP PPK KF +HPN+ +G +CL
Sbjct: 51 NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLD 110
Query: 97 ILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI 146
+L N W PA+T++ L+ IQ LL P P DP + +++ + F+
Sbjct: 111 VLK--NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFV 158
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
G+ R + E ++ + P G A+P+ N + +I G + +EGG F L
Sbjct: 3 SAGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLE 57
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
L+ E+YP PK +F +HPNV G +CL IL + W PA+ ++ +L+ IQ LL
Sbjct: 58 LFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLS 115
Query: 123 QPNPADPAQTD 133
PNP DP D
Sbjct: 116 APNPDDPLAND 126
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G+ R + E ++ + P G A+P+ N + +I G + +EGG F L L
Sbjct: 2 AGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLEL 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+ E+YP PK +F +HPNV G +CL IL + W PA+ ++ +L+ IQ LL
Sbjct: 57 FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK--DKWSPALQIRTVLLSIQALLSA 114
Query: 124 PNPADPAQTD 133
PNP DP D
Sbjct: 115 PNPDDPLAND 124
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G+ R + E ++ + P G A+P+ N + +I G + +EGG F L L
Sbjct: 5 AGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLEL 59
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
+ E+YP PK +F +HPNV G +CL IL + W PA+ ++ +L+ IQ LL
Sbjct: 60 FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSA 117
Query: 124 PNPADPAQTD 133
PNP DP D
Sbjct: 118 PNPDDPLAND 127
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
+A R+ +E + +++ P A P D + W I G + ++GG F L
Sbjct: 1 SAAMAMRRIQKELREIQQDPPCNCSAGPVGDD----IFHWTATITGPDDSPYQGGLFFLD 56
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
++F DYP K P+ F +HPN+ +G +CL IL + W PA+T+ ++L+ I LL
Sbjct: 57 VHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQ--WSPALTLSRVLLSISSLLT 114
Query: 123 QPNPADP 129
PNP+DP
Sbjct: 115 DPNPSDP 121
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
DYP KPPK F +HPN+ +G++ L IL + W PA+T+ ++L+ I LL PN
Sbjct: 57 PTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR--SQWSPALTISKVLLSICSLLCDPN 114
Query: 126 PADP 129
P DP
Sbjct: 115 PDDP 118
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
G+ R + E ++ + P G A+P+ N + +I G + +EGG F L L+
Sbjct: 1 GLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELF 55
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
E+YP PK +F +HPNV G +CL IL + W PA+ ++ +L+ IQ LL P
Sbjct: 56 LPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK--DKWSPALQIRTVLLSIQALLSAP 113
Query: 125 NPADPAQTD 133
NP DP D
Sbjct: 114 NPDDPLAND 122
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G + R+ +E + P A P+ N+ W I G G+ +EGG F L +
Sbjct: 1 GSTSAKRIQKELAEITLDPPPNCSAGPKGD----NIYEWRSTILGPPGSVYEGGVFFLDI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
FS DYP KPPK F +H N+ G +CL IL ++ W PA+T+ ++L+ I LL
Sbjct: 57 TFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTD 114
Query: 124 PNPADP 129
NPADP
Sbjct: 115 CNPADP 120
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
R+ +E + + G A+P NL ++ I G + +E G F L LY +DY
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
P + PK +F +HPN+ G +CL +L W PA+ ++ +L+ IQ LL PNP DP
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRICLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 130 AQTDGYQLFIQ 140
D + +I+
Sbjct: 121 LANDVAEDWIK 131
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
R+ +E + + G A+P NL ++ I G + +E G F L LY +DY
Sbjct: 9 RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 64
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
P + PK +F +HPN+ G +CL +L W PA+ ++ +L+ IQ LL PNP DP
Sbjct: 65 PMEAPKVRFLTKIYHPNIDRLGRICLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 122
Query: 130 AQTDGYQLFIQ 140
D + +I+
Sbjct: 123 LANDVAEDWIK 133
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
+ R+ +E ++ P A P D L W+ I G + + GG F L+++F
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDD----LYHWQASIMGPADSPYAGGVFFLSIHFP 58
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
DYP KPPK F +HPN+ +G +CL IL + W PA+T+ ++L+ I LL NP
Sbjct: 59 TDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANP 116
Query: 127 ADP 129
DP
Sbjct: 117 DDP 119
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 42 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
W I G GT +EGG+F L + DYP PPK KF +HPN+ +G +CL IL
Sbjct: 77 WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKH 136
Query: 101 DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI 146
+ W PA+T++ L+ IQ +L P P DP + ++ I+ F+
Sbjct: 137 E--WSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFV 180
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFP 56
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
DYP KPPK F +HPN+ +G++ L IL + W PA+ + ++L+ I LL PNP
Sbjct: 57 TDYPFKPPKVAFTTRIYHPNINSNGSISLDILR--SQWSPALKISKVLLSICSLLCDPNP 114
Query: 127 ADP 129
DP
Sbjct: 115 DDP 117
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 42 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE- 100
WE ++ G T +EGG+F L F DYP KPPK KF +HPN+ G VC+SIL++
Sbjct: 36 WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDP 95
Query: 101 ----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQL 137
+ W P TV+ IL+ + +L PN PA D ++
Sbjct: 96 GDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKM 142
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 4 GGIARGRLTEERK--AWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
G + RG L R+ KN GF A + +L WE +I G T +EGG F
Sbjct: 13 GLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDN---DLYRWEVLIIGPPDTLYEGGVFKA 69
Query: 62 TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITV 110
L F +DYP +PPK KF +HPNV +G VC+SIL+E + W P TV
Sbjct: 70 HLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTV 129
Query: 111 KQILVGIQDLLDQPNPADPAQTDGYQ 136
+ I++ + +L PN PA D +
Sbjct: 130 ETIMISVISMLADPNGDSPANVDAAK 155
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
N+ W I G G+ +EGG F L + F+ +YP KPPK F +H N+ G +CL I
Sbjct: 76 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 135
Query: 98 LNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
L ++ W PA+T+ ++L+ I LL NPADP
Sbjct: 136 LKDN--WSPALTISKVLLSICSLLTDCNPADP 165
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
DYP KPPK F +HP + +G++ L IL + W PA+T+ ++L+ I LL PN
Sbjct: 57 PTDYPFKPPKVAFTTRIYHPAINSNGSISLDILR--SQWSPALTISKVLLSICSLLCDPN 114
Query: 126 PADP 129
P DP
Sbjct: 115 PDDP 118
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
R+ +E + + G A+P NL ++ I G + +E G F L LY +DY
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
P + PK +F +HPN+ G + L +L W PA+ ++ +L+ IQ LL PNP DP
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRISLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 130 AQTDGYQLFIQ 140
D + +I+
Sbjct: 121 LANDVAEDWIK 131
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
+L WE I G T +EGGYF L F DYP PP +F +HPN+Y +G VC+SI
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 98 LN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 138
L+ W P V+ IL+ + LL++PN PA D ++
Sbjct: 93 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 144
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
+L WE I G T +EGGYF L F DYP PP +F +HPN+Y +G VC+SI
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 98 LN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 138
L+ W P V+ IL+ + LL++PN PA D ++
Sbjct: 96 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL +E + + G A P DG NL W + G T +E + LTL F DY
Sbjct: 13 RLQQELRTLLMSGDPGITAFP---DGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
P KPP KF +HPNV SG +CL IL E+ W + V+ IL+ +Q LL +PN A P
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSLQSLLGEPNNASP 126
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 48 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRP 106
G GT +EGG F + + +YP KPPK +F +HPN+ +G +CL IL N W P
Sbjct: 41 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR--NAWSP 98
Query: 107 AITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ 140
IT+K L+ +Q LL P P DP + Q +++
Sbjct: 99 VITLKSALISLQALLQSPEPNDPQDAEVAQHYLR 132
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 48 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRP 106
G GT +EGG F + + +YP KPPK +F +HPN+ +G +CL IL N W P
Sbjct: 40 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSP 97
Query: 107 AITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ 140
IT+K L+ +Q LL P P DP + Q +++
Sbjct: 98 VITLKSALISLQALLQSPEPNDPQDAEVAQHYLR 131
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
R+ +E + + G A+P NL ++ I G + +E G F L LY +DY
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
P + PK +F +HP + G + L +L W PA+ ++ +L+ IQ LL PNP DP
Sbjct: 63 PMEAPKVRFLTKIYHPAIDRLGRISLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 130 AQTDGYQLFIQ 140
D + +I+
Sbjct: 121 LANDVAEDWIK 131
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 19 RKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKF 78
++N+ G AKP ++D +M WE I G + W+G F LT++F+ +Y PP KF
Sbjct: 36 KENNYKGITAKPVSED----MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKF 91
Query: 79 PQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQL 137
FHPNV P +G C+ L+ W T+ IL+ +Q +L P +P + ++
Sbjct: 92 ITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARI 151
Query: 138 FIQ 140
++
Sbjct: 152 LVK 154
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 3 GGGIARG----RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY 58
GG ARG RL +E + G A PE S NL W I G GT +E
Sbjct: 23 SGGAARGPVGKRLQQELMTLMMSGDKGISAFPE----SDNLFKWVGTIHGAAGTVYEDLR 78
Query: 59 FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQ 118
+ L+L F YP P KF +HPNV G + L IL E W V+ IL+ IQ
Sbjct: 79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALYDVRTILLSIQ 136
Query: 119 DLLDQPNPADPAQTDGYQL 137
LL +PN P T +L
Sbjct: 137 SLLGEPNIDSPLNTHAAEL 155
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN--EDNG 103
I G T +E G F L + E YP +PP+ +F +HPN+ +G +CL +L
Sbjct: 40 ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGA 99
Query: 104 WRPAITVKQILVGIQDLLDQPNPADPAQTD 133
WRP++ + +L IQ L+ +PNP DP D
Sbjct: 100 WRPSLNIATVLTSIQLLMSEPNPDDPLMAD 129
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 23 PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82
P G P +D L + I G GT + GG F + L +D+P+ PPK F
Sbjct: 30 PDGIKVFPNEED----LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85
Query: 83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ 140
FHPNV +G +C+++L D W + ++ +L+ I+ LL PNP + +L ++
Sbjct: 86 FHPNVGANGEICVNVLKRD--WTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLE 141
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 25 GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84
+ P++ D S + + + P + ++ G L F+E YP +PPK + FH
Sbjct: 50 NVITSPDSADRSQSPKLEVIVRPDEGYYNY--GSINFNLDFNEVYPIEPPKVVCLKKIFH 107
Query: 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ 140
PN+ G VCL+IL ED W PA+ ++ I+ G+ L +PNP DP D +L +
Sbjct: 108 PNIDLKGNVCLNILRED--WSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCE 161
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 113
++ G F + + YP PPK K +HPN+ G VCL+IL ED W+P +T+ I
Sbjct: 48 YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILRED--WKPVLTINSI 105
Query: 114 LVGIQDLLDQPNPADPAQTDGYQLF 138
+ G+Q L +PNP DP + ++
Sbjct: 106 IYGLQYLFLEPNPEDPLNKEAAEVL 130
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWE-CIIPGKTGTDWEGGYFPL 61
G A RL +E + RK F + NL+ W+ I+P ++ G F +
Sbjct: 1 GSMAASRRLMKELEEIRKCGMKNFR---NIQVDEANLLTWQGLIVPD--NPPYDKGAFRI 55
Query: 62 TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
+ F +YP KPPK F +HPN+ G VCL +++ +N W+PA Q++ + L+
Sbjct: 56 EINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQVIQSLIALV 114
Query: 122 DQPNPADPAQTD 133
+ P P P + D
Sbjct: 115 NDPQPEHPLRAD 126
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWE-CIIPGKTGTDWEGGYF 59
M+ L E RK KN + V NL+ W+ I+P ++ G F
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQV-------DEANLLTWQGLIVPD--NPPYDKGAF 51
Query: 60 PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
+ + F +YP KPPK F +HPN+ G VCL +++ +N W+PA Q++ +
Sbjct: 52 RIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQVIQSLIA 110
Query: 120 LLDQPNPADPAQTD 133
L++ P P P + D
Sbjct: 111 LVNDPQPEHPLRAD 124
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
G +A R+ +E + +K P ++ + D N+++W ++ + F L
Sbjct: 1 GSHMASMRVVKELEDLQKKPP-PYLRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLR 56
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
+ F +YP KPP KF +HPNV +G +CL I++ +N W+P Q+L + L++
Sbjct: 57 ISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVN 115
Query: 123 QPNPADPAQTDGYQLFIQ 140
+PN +P + D L Q
Sbjct: 116 RPNIREPLRMDLADLLTQ 133
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 113
++ G F + + YP PPK K +HPN+ G V L+IL ED W+P +T+ I
Sbjct: 68 YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED--WKPVLTINSI 125
Query: 114 LVGIQDLLDQPNPADPAQTDGYQLF 138
+ G+Q L +PNP DP + ++
Sbjct: 126 IYGLQYLFLEPNPEDPLNKEAAEVL 150
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E + +K P ++ + D N+++W ++ + F L + F
Sbjct: 1 MASMRVVKELEDLQKKPP-PYLRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLRISF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
+YP KPP KF +HPNV +G +CL I++ +N W+P Q+L + L+++PN
Sbjct: 57 PPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVNRPN 115
Query: 126 PADPAQTDGYQLFIQ 140
+P + D L Q
Sbjct: 116 IREPLRMDLADLLTQ 130
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSE 67
+ RL +E A + + P G ++ S+ W + G GT +EG F L FS
Sbjct: 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQ--WIVDMEGAPGTLYEGEKFQLLFKFSS 81
Query: 68 DYPSKPPKCKFPQGFF--HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
YP P+ F HP+VY +G +CLSIL ED W PA++V+ + + I +L
Sbjct: 82 RYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED--WSPALSVQSVCLSIISMLS 136
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 42 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
++ + G GT +EGG + + + +DYP P F HPNV SG+VCL ++N+
Sbjct: 31 FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90
Query: 101 DNGWRPAITVKQIL-VGIQDLLDQPNPADPAQTDGYQLFIQ 140
W P ++ + V + LL PNP+DP +D L ++
Sbjct: 91 --TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMK 129
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 39 LMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTV 93
L I + +I G T + G F +YF +DYPS PP F+PN+Y G V
Sbjct: 109 LDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKV 168
Query: 94 CLSILNE-----DNGWRPAI-TVKQILVGIQDLL 121
CLSILN + W P + Q+LV +Q L+
Sbjct: 169 CLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLI 202
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 60/146 (41%), Gaps = 22/146 (15%)
Query: 1 MSGGGIARGRLTEER------KAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDW 54
MSG G R E + RK +P VA+ W G GT +
Sbjct: 5 MSGAGNLRSNRRREMDYMRLCNSTRKVYPSDTVAE-----------FW-VEFKGPEGTPY 52
Query: 55 EGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQI 113
E G + L + DYP K P F HPNV SG+VCL ++N+ W P ++ I
Sbjct: 53 EDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ--TWTPMYQLENI 110
Query: 114 L-VGIQDLLDQPNPADPAQTDGYQLF 138
V + LL PNP+DP L
Sbjct: 111 FDVFLPQLLRYPNPSDPLNVQAAHLL 136
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 48 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRP 106
G GT +EGG + + + + YP K P F FHPN+ SGTVCL ++N+ W
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT--WTA 116
Query: 107 AITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQ 140
+ I + LL PNP DP D +++
Sbjct: 117 LYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLH 151
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 11 LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP 70
L E + + N G E+ D + L W C I G+ GT +E + LT++ ++YP
Sbjct: 31 LDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYP 89
Query: 71 SKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPADP 129
PP KF V G V + L+ W T++ IL+ + Q++L N P
Sbjct: 90 DSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLP 149
Query: 130 AQTDG 134
+G
Sbjct: 150 QPNEG 154
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 11 LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP 70
L E + + N G E+ D + L W C I G+ GT +E + LT++ ++YP
Sbjct: 27 LDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYP 85
Query: 71 SKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPADP 129
PP KF V G V + L+ W T++ IL+ + Q++L N P
Sbjct: 86 DSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLP 145
Query: 130 AQTDG 134
+G
Sbjct: 146 QPNEG 150
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECI--IPGKTGTDWEGGY 58
M+ IA R+ E K K+ +K + K V+ E I G T +EGG
Sbjct: 3 MAMANIAVQRIKREFKEVLKSEE---TSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGR 59
Query: 59 FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGI 117
+ L + E YP PPK +F +HPN+ +G +CL IL + W A+T++ +L+ +
Sbjct: 60 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSL 117
Query: 118 QDLLDQPNPADP 129
Q LL P DP
Sbjct: 118 QALLAAAEPDDP 129
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 117
Query: 105 RPAITVKQILVGIQDLLDQPNPADP 129
A+T++ +L+ +Q LL P DP
Sbjct: 118 AAAMTLRTVLLSLQALLAAAEPDDP 142
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 45 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 102
Query: 105 RPAITVKQILVGIQDLLDQPNPADP 129
A+T++ +L+ +Q LL P DP
Sbjct: 103 AAAMTLRTVLLSLQALLAAAEPDDP 127
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 101
Query: 105 RPAITVKQILVGIQDLLDQPNPADP 129
A+T++ +L+ +Q LL P DP
Sbjct: 102 AAAMTLRTVLLSLQALLAAAEPDDP 126
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 153
Query: 105 RPAITVKQILVGIQDLLDQPNPADP 129
A+T++ +L+ +Q LL P DP
Sbjct: 154 AAAMTLRTVLLSLQALLAAAEPDDP 178
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 109
++GG F + Y PPK K +HPN+ +G +CLS+L E + GW P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 110 VKQILVGIQDLL-DQPNPADPAQTDGYQLFIQ 140
+K ++ G+ L D N DP + + ++
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLR 149
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 109
++GG F + Y PPK K +HPN+ +G +CLS+L E + GW P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 110 VKQILVGIQDLL-DQPNPADPAQTDGYQLFIQ 140
+K ++ G+ L D N DP + + ++
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLR 149
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCL 95
+L WE II G + T +E F + + YP PPK F Q H NV +G +CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 96 SILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD 133
+IL + W P + + + LL +P P D
Sbjct: 106 NILKPEE-WTPVWDLLHCVHAVWRLLREPVSDSPLDVD 142
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLS 96
N+ IW G T + + L + F +DYP KPP F Q H +VY +G +CLS
Sbjct: 34 NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLS 93
Query: 97 ILNEDNGWRPAITVKQILVGIQDLLDQ 123
+L +D + P++++ +++ I +L
Sbjct: 94 LLGDD--YNPSLSISGLVLSIISMLSS 118
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKF--PQGFFHPNVYPSGTVCL 95
N++ W ++ G T +EGGY+ L F ++P KPP P G F N +CL
Sbjct: 42 NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT----RLCL 97
Query: 96 SILN-EDNGWRPAITVKQILVGIQDLLDQPNPA----DPAQTDGYQLFIQVL 142
SI + + W PA +V IL G+ + + P + + QL +Q L
Sbjct: 98 SITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSL 149
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
G A R+ +E + KN P N+ IW G T + + + +
Sbjct: 19 GNANYRIQKELNNFLKNPPINCTIDVHPS----NIRIWIVQYVGLENTIYANEVYKIKII 74
Query: 65 FSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
F ++YP KPP F Q H +VY +G +CLS+L +D + P++++ +++ I +L
Sbjct: 75 FPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDD--YNPSLSISGLILSIISMLSS 132
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCL 95
+L WE II G + T +E F + + YP PPK F Q H NV +G +CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 96 SILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD 133
+IL + W P + + + LL +P P D
Sbjct: 106 NILKPEE-WTPVWDLLHCVHAVWRLLREPVCDSPLDVD 142
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCL 95
+L WE II G + T +E F + + YP PPK F Q H NV +G +CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 96 SILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD 133
+IL + W P + + + LL +P P D
Sbjct: 106 NILKPEE-WTPVWDLLHCVHAVWRLLREPVCDSPLDVD 142
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 41 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
I + P + G + L++ FS+DYP +PP +F + P V G +C ++N+
Sbjct: 53 ILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND 112
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%)
Query: 37 VNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLS 96
+ + W I G ++ E + L++ +YP PPK F P V P+ +
Sbjct: 37 ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQT 96
Query: 97 ILNEDNGWRPAITVKQILVGIQDLLDQP 124
+ W+ A T++ +L+ ++ + P
Sbjct: 97 DFHTLRDWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%)
Query: 37 VNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLS 96
+ + W I G ++ E + L++ +YP PPK F P V P+ +
Sbjct: 36 ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQT 95
Query: 97 ILNEDNGWRPAITVKQILVGIQDLLDQP 124
+ W+ A T++ +L+ ++ + P
Sbjct: 96 DFHTLRDWKRAYTMETLLLDLRKEMATP 123
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T++E + L + Y
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68
Query: 70 PSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
P PP +F + SG V + W+ + ++K +L ++ L+
Sbjct: 69 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 121
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T++E + L + Y
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 70 PSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
P PP +F + SG V + W+ + ++K +L ++ L+
Sbjct: 79 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 131
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T +E + L + Y
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTV----CLSILNEDNGWRPAITVKQILVGIQDLL 121
P PP +F V S V +S+L + W+ + ++K +L ++ L+
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK---WQNSYSIKVVLQELRRLM 141
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T++E + L + Y
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 70 PSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
P PP +F + SG V + W+ + ++K +L ++ L+
Sbjct: 74 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 126
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T++E + L + Y
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67
Query: 70 PSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
P PP +F + SG V + W+ + ++K +L ++ L+
Sbjct: 68 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 120
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T +E + L + Y
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTV----CLSILNEDNGWRPAITVKQILVGIQDLL 121
P PP +F V S V +S+L + W+ + ++K +L ++ L+
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK---WQNSYSIKVVLQELRRLM 123
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 32.3 bits (72), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T +E + L + Y
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTV----CLSILNEDNGWRPAITVKQILVGIQDLL 121
P PP +F V S V +S+L + W+ + ++K +L ++ L+
Sbjct: 99 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK---WQNSYSIKVVLQELRRLM 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.142 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,684,693
Number of Sequences: 62578
Number of extensions: 251724
Number of successful extensions: 560
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 118
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)