Query 032159
Match_columns 146
No_of_seqs 138 out of 1138
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 3E-53 6.6E-58 297.0 15.2 135 6-145 5-139 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 5.8E-53 1.3E-57 289.7 12.8 133 7-145 2-134 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 5.3E-52 1.2E-56 278.0 12.4 138 1-146 1-138 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 4.8E-49 1E-53 278.3 16.2 133 7-145 3-135 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.8E-48 6.1E-53 273.2 15.9 132 8-145 3-134 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 5.4E-47 1.2E-51 260.8 14.2 142 1-146 1-153 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 6.3E-46 1.4E-50 252.1 14.6 143 1-145 1-144 (158)
8 KOG0426 Ubiquitin-protein liga 100.0 3.8E-45 8.2E-50 245.2 13.0 140 1-145 1-151 (165)
9 PF00179 UQ_con: Ubiquitin-con 100.0 5E-44 1.1E-48 250.0 13.5 132 10-145 1-132 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 1.8E-43 4E-48 247.4 15.1 133 9-146 2-134 (141)
11 KOG0418 Ubiquitin-protein liga 100.0 6.2E-44 1.3E-48 252.4 12.0 136 1-145 1-140 (200)
12 KOG0421 Ubiquitin-protein liga 100.0 6E-44 1.3E-48 242.5 10.2 134 5-145 28-161 (175)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.8E-41 3.9E-46 238.4 15.1 132 9-145 1-133 (145)
14 KOG0422 Ubiquitin-protein liga 100.0 1.9E-39 4.1E-44 219.5 12.2 135 7-146 3-137 (153)
15 KOG0420 Ubiquitin-protein liga 100.0 3.2E-38 6.9E-43 220.4 10.7 136 5-146 27-163 (184)
16 KOG0416 Ubiquitin-protein liga 100.0 2.2E-37 4.7E-42 215.9 9.2 130 7-145 4-135 (189)
17 KOG0423 Ubiquitin-protein liga 100.0 6.6E-35 1.4E-39 204.1 4.8 134 7-146 11-144 (223)
18 KOG0427 Ubiquitin conjugating 100.0 6.9E-32 1.5E-36 181.1 11.5 120 5-131 14-135 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 4.9E-30 1.1E-34 185.2 12.4 116 1-125 1-119 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 5E-24 1.1E-28 154.6 11.5 131 9-146 22-158 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 8.6E-23 1.9E-27 150.4 9.9 112 5-125 10-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 3.7E-18 7.9E-23 146.3 7.6 112 8-123 853-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 8.6E-16 1.9E-20 132.0 10.2 116 5-124 281-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 2.5E-15 5.5E-20 101.7 7.3 117 6-122 5-122 (138)
25 KOG0897 Predicted ubiquitin-co 98.8 4.4E-09 9.6E-14 69.6 4.0 75 59-134 13-90 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.8 3.5E-08 7.6E-13 68.3 8.2 84 55-141 34-123 (133)
27 PF05743 UEV: UEV domain; Int 98.5 4.5E-07 9.7E-12 61.8 6.9 79 37-122 30-116 (121)
28 KOG2391 Vacuolar sorting prote 98.2 1.7E-05 3.8E-10 61.9 8.9 85 35-126 48-140 (365)
29 PF08694 UFC1: Ubiquitin-fold 97.8 2.4E-05 5.2E-10 54.0 3.1 100 6-114 24-135 (161)
30 KOG3357 Uncharacterized conser 96.7 0.0039 8.5E-08 42.6 4.7 89 6-105 27-126 (167)
31 PF05773 RWD: RWD domain; Int 96.7 0.01 2.3E-07 38.9 6.7 69 9-82 4-74 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.4 0.042 9.1E-07 37.4 8.5 84 38-122 22-120 (122)
33 PF14457 Prok-E2_A: Prokaryoti 96.1 0.011 2.5E-07 42.2 4.7 86 37-123 28-126 (162)
34 smart00591 RWD domain in RING 96.1 0.18 3.8E-06 32.7 10.1 26 55-80 39-64 (107)
35 PF09765 WD-3: WD-repeat regio 91.8 0.36 7.9E-06 37.7 4.8 86 7-121 100-186 (291)
36 KOG0309 Conserved WD40 repeat- 88.5 2.2 4.8E-05 37.6 7.1 67 9-81 423-491 (1081)
37 KOG4018 Uncharacterized conser 87.9 2.6 5.6E-05 31.4 6.3 63 9-78 5-70 (215)
38 PF14460 Prok-E2_D: Prokaryoti 81.1 1.7 3.6E-05 31.4 2.8 38 79-121 89-129 (175)
39 PF06113 BRE: Brain and reprod 78.1 8.2 0.00018 30.8 5.9 61 53-121 61-124 (333)
40 TIGR03737 PRTRC_B PRTRC system 74.3 6.7 0.00015 29.6 4.4 38 80-123 131-172 (228)
41 smart00340 HALZ homeobox assoc 62.3 8 0.00017 21.2 1.9 15 7-21 20-34 (44)
42 PF03366 YEATS: YEATS family; 55.4 48 0.001 20.9 5.0 43 40-84 2-44 (84)
43 PF04881 Adeno_GP19K: Adenovir 47.2 18 0.0004 24.8 2.2 26 37-62 45-71 (139)
44 KOG3285 Spindle assembly check 46.6 76 0.0017 23.2 5.4 58 4-76 117-174 (203)
45 PF13950 Epimerase_Csub: UDP-g 43.2 28 0.0006 20.5 2.4 19 103-121 37-55 (62)
46 KOG4445 Uncharacterized conser 42.5 33 0.00071 27.2 3.2 25 57-81 45-69 (368)
47 PF00845 Gemini_BL1: Geminivir 41.3 58 0.0013 25.0 4.3 47 37-83 100-154 (276)
48 PF06113 BRE: Brain and reprod 40.6 37 0.0008 27.2 3.3 25 56-80 305-329 (333)
49 KOG0177 20S proteasome, regula 39.5 88 0.0019 23.1 4.9 32 90-123 135-166 (200)
50 cd05845 Ig2_L1-CAM_like Second 39.4 69 0.0015 20.6 4.0 26 54-81 16-41 (95)
51 cd00421 intradiol_dioxygenase 39.4 42 0.0009 23.3 3.2 24 56-79 65-89 (146)
52 cd03457 intradiol_dioxygenase_ 33.0 58 0.0013 23.8 3.2 24 56-79 86-109 (188)
53 PF09280 XPC-binding: XPC-bind 30.4 35 0.00077 20.0 1.4 18 129-146 33-50 (59)
54 KOG0662 Cyclin-dependent kinas 30.1 50 0.0011 24.6 2.4 55 71-127 167-225 (292)
55 PF12065 DUF3545: Protein of u 29.4 38 0.00083 20.0 1.4 11 8-18 36-46 (59)
56 KOG1047 Bifunctional leukotrie 28.9 56 0.0012 28.1 2.8 29 52-81 248-279 (613)
57 cd03459 3,4-PCD Protocatechuat 28.1 81 0.0018 22.3 3.2 23 57-79 73-100 (158)
58 PF00779 BTK: BTK motif; Inte 26.4 20 0.00044 18.4 -0.1 17 82-98 2-19 (32)
59 COG3866 PelB Pectate lyase [Ca 24.8 1.1E+02 0.0025 24.4 3.6 40 40-80 197-240 (345)
60 PF09943 DUF2175: Uncharacteri 23.2 87 0.0019 20.6 2.3 19 41-61 2-20 (101)
61 COG1225 Bcp Peroxiredoxin [Pos 21.9 1.3E+02 0.0029 21.3 3.3 31 86-120 125-155 (157)
62 PF12627 PolyA_pol_RNAbd: Prob 20.9 1.1E+02 0.0023 17.5 2.3 19 5-23 21-39 (64)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-53 Score=297.02 Aligned_cols=135 Identities=45% Similarity=0.775 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 032159 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP 85 (146)
Q Consensus 6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 85 (146)
.|.+||++|++.+++++++++++.+..+ +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|+|+||||
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d---~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HP 81 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAGPVDD---DNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHP 81 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEECCC---CcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCC
Confidence 3999999999999999999999999883 3999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 86 nV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
||+.+|+||+++|.+ +|+|+++|.+||.+|+++|.+||.++|+|.|||++|++|+++|
T Consensus 82 NV~~~G~vCLdIL~~--~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y 139 (153)
T COG5078 82 NVDPSGNVCLDILKD--RWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEY 139 (153)
T ss_pred CcCCCCCChhHHHhC--CCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHH
Confidence 999999999999998 8999999999999999999999999999999999999999988
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-53 Score=289.74 Aligned_cols=133 Identities=38% Similarity=0.737 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (146)
Q Consensus 7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (146)
+.+||.||++++.+++++||++.+.. +|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+|||||
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~----dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPN 77 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVG----DNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPN 77 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCC----CceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCC
Confidence 36799999999999999999999777 89999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
|++.|+||+++|.. .|+|+.+|..||.+|+++|.+||+++|++.++|++|++|+.+|
T Consensus 78 I~~~G~IclDILk~--~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~ 134 (148)
T KOG0417|consen 78 IDSNGRICLDILKD--QWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKY 134 (148)
T ss_pred cCccccchHHhhhc--cCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHH
Confidence 99999999999999 7999999999999999999999999999999999999999987
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-52 Score=277.98 Aligned_cols=138 Identities=43% Similarity=0.791 Sum_probs=134.9
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (146)
Q Consensus 1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (146)
|+ +.|.+||.+|++.++++++.|++..|.+ +|+++|.+.|.||++|||+||+|++.|.|+++||.+||.|+|++
T Consensus 1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~----~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs 74 (152)
T KOG0419|consen 1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVE----NNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS 74 (152)
T ss_pred CC--chHHHHHHHHHHHhhcCCCCCccCCCCc----cceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee
Confidence 67 8999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159 81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI 146 (146)
Q Consensus 81 ~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~ 146 (146)
++||||||.+|.+|+++|.. .|+|.|++.+||.+||+||.+|++++|+|.|||++|++|+.+|+
T Consensus 75 ~mFHPNvya~G~iClDiLqN--rWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~ 138 (152)
T KOG0419|consen 75 KMFHPNVYADGSICLDILQN--RWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYE 138 (152)
T ss_pred eccCCCcCCCCcchHHHHhc--CCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHH
Confidence 99999999999999999999 89999999999999999999999999999999999999998874
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.8e-49 Score=278.28 Aligned_cols=133 Identities=34% Similarity=0.702 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (146)
Q Consensus 7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (146)
+.|||++|++++++++++++.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~----~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN 78 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDP----GNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN 78 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECC----CCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence 68999999999999999999999877 79999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
|+++|.||+++|.+ +|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+.+|
T Consensus 79 V~~~G~iCl~iL~~--~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f 135 (152)
T PTZ00390 79 IDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADA 135 (152)
T ss_pred ECCCCeEECccCcc--cCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHH
Confidence 99999999999987 8999999999999999999999999999999999999999988
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.8e-48 Score=273.20 Aligned_cols=132 Identities=36% Similarity=0.738 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 032159 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 87 (146)
Q Consensus 8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 87 (146)
.+||++|++++++++++++++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~----~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv 78 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSD----ENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI 78 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECC----CChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence 6999999999999999999999876 899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 88 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 88 ~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
+.+|.||+++|.+ .|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus 79 ~~~G~iCl~il~~--~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f 134 (147)
T PLN00172 79 NSNGSICLDILRD--QWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRY 134 (147)
T ss_pred CCCCEEEcccCcC--CCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHH
Confidence 9999999999987 8999999999999999999999999999999999999999988
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-47 Score=260.75 Aligned_cols=142 Identities=32% Similarity=0.605 Sum_probs=133.6
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (146)
Q Consensus 1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (146)
|++ +.+..-|+++|++|++.+..|+++...++ .|+++|.|.|.||++|+|+||.|+..+.||.+||.+||++||.+
T Consensus 1 m~~-~~a~~ll~~qlk~L~~~pv~gf~~glvd~---~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s 76 (171)
T KOG0425|consen 1 MTS-SQASLLLLKQLKELQEEPVEGFSVGLVDD---SDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS 76 (171)
T ss_pred Ccc-chhHHHHHHHHHHHhcCCCCccccccccC---CceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh
Confidence 443 44788899999999999999999988774 79999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcEEecCCCC-----------CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159 81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI 146 (146)
Q Consensus 81 ~i~HpnV~~~G~icl~~l~~-----------~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~ 146 (146)
++||||||++|++|+++|.+ .+.|.|.+|+++||++|.+||.+||.++|+|.|||+.|++|+++|.
T Consensus 77 ~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~Eyk 153 (171)
T KOG0425|consen 77 KMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYK 153 (171)
T ss_pred hhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHH
Confidence 99999999999999999986 3579999999999999999999999999999999999999999983
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-46 Score=252.12 Aligned_cols=143 Identities=66% Similarity=1.201 Sum_probs=138.0
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 032159 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP 79 (146)
Q Consensus 1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (146)
|| +.+..||+.|-+.+.++.+-|+.+.|..+ ++..|++.|++.|.|++||+||||.|.+++.||++||.+||+++|.
T Consensus 1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 66 78899999999999999999999999998 6689999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 80 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 80 t~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
+++||||||.+|.||+++|.++.+|+|+.||.+||.+||+||.+||+.+|+|.||..+|.+|+..|
T Consensus 79 ~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eY 144 (158)
T KOG0424|consen 79 PPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEY 144 (158)
T ss_pred CCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHH
Confidence 999999999999999999999667999999999999999999999999999999999999999876
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-45 Score=245.24 Aligned_cols=140 Identities=41% Similarity=0.766 Sum_probs=135.1
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (146)
Q Consensus 1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (146)
|+ ..|.|||++||++|..++++||.+.|..+ +|.++|.+.|.||++|+|+||.|..++.||.+||.+||+++|..
T Consensus 1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~E---dnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc 75 (165)
T KOG0426|consen 1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINE---DNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC 75 (165)
T ss_pred Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCc---cceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec
Confidence 66 78999999999999999999999999886 89999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcEEecCCCC-----------CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 81 ~i~HpnV~~~G~icl~~l~~-----------~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
.+|||||+.+|++|+++|.. .+.|+|..+++.||+++.++|.+||.++++|.+|+.+|++|+.+|
T Consensus 76 ~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef 151 (165)
T KOG0426|consen 76 EMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEF 151 (165)
T ss_pred ccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHH
Confidence 99999999999999999974 368999999999999999999999999999999999999999998
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=5e-44 Score=250.00 Aligned_cols=132 Identities=41% Similarity=0.790 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccCC
Q 032159 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP 89 (146)
Q Consensus 10 Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 89 (146)
||++|+++++++++.|+.+.+... +|+.+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~---~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~ 77 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSED---DNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDE 77 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEEST---TETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-T
T ss_pred CHHHHHHHHhhCCCCCEEEEECCC---CChheEEEEEeccCccceecccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999882 49999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 90 SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 90 ~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
+|+||+++|..+ .|+|++++.+||.+|+++|.+|+.++|+|.+||++|++|+++|
T Consensus 78 ~G~icl~~l~~~-~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f 132 (140)
T PF00179_consen 78 NGRICLDILNPE-SWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEF 132 (140)
T ss_dssp TSBBGHGGGTTT-TC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHH
T ss_pred cccchhhhhhcc-cCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHH
Confidence 999999999862 5999999999999999999999999999999999999999988
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.8e-43 Score=247.45 Aligned_cols=133 Identities=42% Similarity=0.806 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccC
Q 032159 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 88 (146)
Q Consensus 9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 88 (146)
|||++|+++++++++.|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~----~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~ 77 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVE----ENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECC----CChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence 799999999999999999999887 7999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159 89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI 146 (146)
Q Consensus 89 ~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~ 146 (146)
.+|.||+++|..+ +|+|++++.+||.+|+++|.+|+.++|+|.+||++|++|+++|.
T Consensus 78 ~~G~icl~~l~~~-~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~ 134 (141)
T cd00195 78 ENGKICLSILKTH-GWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFK 134 (141)
T ss_pred CCCCCchhhcCCC-CcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHH
Confidence 9999999999872 49999999999999999999999999999999999999999983
No 11
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-44 Score=252.35 Aligned_cols=136 Identities=34% Similarity=0.619 Sum_probs=130.9
Q ss_pred CCcchHHHHHHHHHHHHHHHcC---CCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 032159 1 MSGGGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK 77 (146)
Q Consensus 1 ms~~~~~~~Rl~~El~~l~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 77 (146)
|+ . +.+||++|.+++.+++ ..+|.+.... +|+.+..+.|.||+|||||||+|.++|++|++|||+||+|+
T Consensus 1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn----~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~ 73 (200)
T KOG0418|consen 1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVN----ENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK 73 (200)
T ss_pred Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEcc----CChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence 66 5 8999999999999887 6899999888 89999999999999999999999999999999999999999
Q ss_pred eccCccccccCC-CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 78 FPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 78 f~t~i~HpnV~~-~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
|.|+||||||++ +|.||+++|.+ .|.+++||..+|++||++|..|++.+|.+...|++|.+|++.|
T Consensus 74 F~TkIwHPnVSs~tGaICLDilkd--~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F 140 (200)
T KOG0418|consen 74 FITKIWHPNVSSQTGAICLDILKD--QWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMF 140 (200)
T ss_pred eeeeeecCCCCcccccchhhhhhc--ccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHH
Confidence 999999999985 99999999999 8999999999999999999999999999999999999999988
No 12
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-44 Score=242.53 Aligned_cols=134 Identities=36% Similarity=0.600 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (146)
Q Consensus 5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (146)
....|||++||..|+....+||++.|.. +|+++|.++|.||.+|+|+|-.|++.+.||.+||++||.|+|+|+.||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~----dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H 103 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPES----DNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH 103 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcCc----CceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence 4568999999999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
|||+..|.||+++|.+ .|+..|.++.||++||++|-+||.++|+|..||++|. |+++|
T Consensus 104 PNVD~~GnIcLDILkd--KWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~ey 161 (175)
T KOG0421|consen 104 PNVDLSGNICLDILKD--KWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEY 161 (175)
T ss_pred CCccccccchHHHHHH--HHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHH
Confidence 9999999999999999 8999999999999999999999999999999999998 77665
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.8e-41 Score=238.37 Aligned_cols=132 Identities=45% Similarity=0.772 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccC
Q 032159 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 88 (146)
Q Consensus 9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 88 (146)
+||++|+++++++.+.|+.+.+..+ +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~---~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~ 77 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDE---DNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD 77 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCC---CChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence 5999999999999999999888762 4999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEecCCC-CCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 89 PSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 89 ~~G~icl~~l~-~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
++|.+|+++|. + +|+|++++.+||.+|+++|.+|+.++|+|.+||++|++|+++|
T Consensus 78 ~~G~icl~~l~~~--~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f 133 (145)
T smart00212 78 SSGEICLDILKQE--KWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEF 133 (145)
T ss_pred CCCCEehhhcCCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence 99999999998 5 8999999999999999999999999999999999999999987
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-39 Score=219.47 Aligned_cols=135 Identities=32% Similarity=0.588 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (146)
Q Consensus 7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (146)
+.+||+|||.+|+++....+.-...+ ..|++.|++.+. |++-||..|.|+++|.||.+|||+||+|.|.|+|||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~---e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN 78 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVD---EANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN 78 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcc---cccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence 78999999999999877644432222 289999999999 89999999999999999999999999999999999999
Q ss_pred cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI 146 (146)
Q Consensus 87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~ 146 (146)
||+.|.+|+.++.. |+|.|++...+||++|..++.+|+++.|++.|+|..|.+|+.+|.
T Consensus 79 VDe~gqvClPiis~-EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~ 137 (153)
T KOG0422|consen 79 VDEKGQVCLPIISA-ENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFV 137 (153)
T ss_pred CCCCCceeeeeeec-ccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHH
Confidence 99999999999987 499999999999999999999999999999999999999999983
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-38 Score=220.43 Aligned_cols=136 Identities=30% Similarity=0.516 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecC-CCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 032159 5 GIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (146)
Q Consensus 5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~-~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (146)
+.|.-||++|..++ +.++.++..... .++ -+..+++++|. |+++.|+||.|.|.+.+|+.||++||+|+|+|++|
T Consensus 27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d-~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDD-LNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred cHHHHHHHhhhhhc--cCCCccccccccCCcc-cccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 56778888888877 455566543222 221 22226999999 99999999999999999999999999999999999
Q ss_pred ccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI 146 (146)
Q Consensus 84 HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~ 146 (146)
||||+.+|.||+++|++ +|+|+.+|.+|+.+|+.+|.+|++++|+|.|||+.+++|++.|.
T Consensus 103 HPNId~~GnVCLnILRe--dW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~ 163 (184)
T KOG0420|consen 103 HPNIDLDGNVCLNILRE--DWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFE 163 (184)
T ss_pred cCCcCCcchHHHHHHHh--cCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHH
Confidence 99999999999999999 89999999999999999999999999999999999999999983
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-37 Score=215.86 Aligned_cols=130 Identities=24% Similarity=0.503 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (146)
Q Consensus 7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (146)
..|||..|...|.... ..+.... +++.+++|.+.||.+|||+||+++++|++|++||++.|.|.|+++|||||
T Consensus 4 ~~rRid~Dv~KL~~s~---yeV~~in----d~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN 76 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMSD---YEVTIIN----DGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN 76 (189)
T ss_pred cccchhhHHHHHHhcC---CeEEEec----CcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence 5799999998887653 4555555 67999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCcEEecCCCCCCCCCccCcHHHHHH-HHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159 87 VYP-SGTVCLSILNEDNGWRPAITVKQILV-GIQDLLDQPNPADPAQTDGYQLFIQVLYWF 145 (146)
Q Consensus 87 V~~-~G~icl~~l~~~~~W~p~~~l~~vl~-~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f 145 (146)
|++ +|.||++.+.+ .|+|.+.+..|+. .|-.||..||+.+|+|.|||.+|.+++++|
T Consensus 77 IDe~SGsVCLDViNQ--tWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y 135 (189)
T KOG0416|consen 77 IDEASGSVCLDVINQ--TWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEY 135 (189)
T ss_pred chhccCccHHHHHhh--hhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHH
Confidence 996 99999999999 8999999999986 568899999999999999999999999886
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-35 Score=204.06 Aligned_cols=134 Identities=27% Similarity=0.560 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (146)
Q Consensus 7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (146)
..|.+.+|++.+..++++||.+.+-+ .|+....+.|.||.||||++|.|+..+.+..+||.+||+-.|+|+|||||
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~Ne----eD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN 86 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNE----EDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN 86 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecCh----HHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence 47889999999999999999998876 78999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI 146 (146)
Q Consensus 87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~ 146 (146)
|..+|.||.+.|.. +|.|..+|..||..|+.+|..|++++.+|.+|++++.++..+|+
T Consensus 87 VaaNGEICVNtLKk--DW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa 144 (223)
T KOG0423|consen 87 VAANGEICVNTLKK--DWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYA 144 (223)
T ss_pred cccCceehhhhhhc--ccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHH
Confidence 99999999999999 89999999999999999999999999999999999999998773
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.9e-32 Score=181.07 Aligned_cols=120 Identities=32% Similarity=0.678 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc-c
Q 032159 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-F 83 (146)
Q Consensus 5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~ 83 (146)
.+|.+||+|||.+++.+++.|+..... +|+.+|.+.+.|.+||.|+|.+|.+.++||+.||++.|.|.|..++ .
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~v~-----dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~ 88 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHRVT-----DNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPL 88 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeecc-----cchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCC
Confidence 578999999999999999999998743 6999999999999999999999999999999999999999999876 7
Q ss_pred ccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcC-CCCCCCCC
Q 032159 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ-PNPADPAQ 131 (146)
Q Consensus 84 HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~-p~~~~p~n 131 (146)
||+||++|.||+++|.+ +|+|++++.+|.++|.++|.+ ..-..|.+
T Consensus 89 HPHiYSNGHICL~iL~d--~WsPAmsv~SvClSIlSMLSSs~eKqrP~D 135 (161)
T KOG0427|consen 89 HPHIYSNGHICLDILYD--SWSPAMSVQSVCLSILSMLSSSKEKQRPTD 135 (161)
T ss_pred CCceecCCeEEEEeecc--cCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence 99999999999999999 899999999999999999954 33334443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-30 Score=185.25 Aligned_cols=116 Identities=31% Similarity=0.585 Sum_probs=106.3
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (146)
Q Consensus 1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (146)
|+ +..|.|||+|||+.|.+++.+++.+.|.. +|+.+||.++.||++|||+||.|+.+|.||++||++||.|+++|
T Consensus 1 ma-~k~a~kRl~keY~~l~k~Pv~~i~A~P~p----~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT 75 (244)
T KOG0894|consen 1 MA-SKAAVKRLQKEYRALCKDPVPYIVARPNP----NNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT 75 (244)
T ss_pred Cc-chHHHHHHHHHHHHHHhCCchhhccCCCc----cceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC
Confidence 55 36799999999999999999999999988 89999999999999999999999999999999999999999998
Q ss_pred C--ccccccCCCCcEEecCCCC-CCCCCccCcHHHHHHHHHHhhcCCC
Q 032159 81 G--FFHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQPN 125 (146)
Q Consensus 81 ~--i~HpnV~~~G~icl~~l~~-~~~W~p~~~l~~vl~~i~~ll~~p~ 125 (146)
+ +|-+| -++|+++-.. .+.|.|++++.+||.+|.++|.+-.
T Consensus 76 PNGRFktn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 76 PNGRFKTN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred CCCceecC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence 5 67777 6999999875 3489999999999999999996533
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5e-24 Score=154.63 Aligned_cols=131 Identities=23% Similarity=0.370 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCC--CCCeeeeccCccccc
Q 032159 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS--KPPKCKFPQGFFHPN 86 (146)
Q Consensus 9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~Hpn 86 (146)
--|..|+..+.+.+.+||++.|.- .|-+.|.++|++.. +.|.||+|+|+|.+|++||. +-|+|.|.+.++||+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSy----an~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ 96 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSY----ANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPL 96 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccc----cccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeeccccccc
Confidence 457788888888999999999998 89999999999765 67999999999999999995 479999999999999
Q ss_pred cCC-CCcEEecCCCCCCCCCccC-cHHHHHHHHHHhhcCCCCCCC--CCHHHHHHHHHhHhhhC
Q 032159 87 VYP-SGTVCLSILNEDNGWRPAI-TVKQILVGIQDLLDQPNPADP--AQTDGYQLFIQVLYWFI 146 (146)
Q Consensus 87 V~~-~G~icl~~l~~~~~W~p~~-~l~~vl~~i~~ll~~p~~~~p--~n~~aa~~~~~~~~~f~ 146 (146)
|.+ ++.+|++-... .|.... +|++||..||.+|.+|+.+.+ .|+|||.+|++++++|+
T Consensus 97 icp~skeLdl~raf~--eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~ 158 (258)
T KOG0429|consen 97 ICPKSKELDLNRAFP--EWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFR 158 (258)
T ss_pred cCCCccceeHhhhhh--hhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHH
Confidence 995 99999998888 698776 899999999999999998866 59999999999999984
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.6e-23 Score=150.43 Aligned_cols=112 Identities=29% Similarity=0.559 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC--c
Q 032159 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--F 82 (146)
Q Consensus 5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i 82 (146)
+.+.|||+||.++++ ++.+.+.+.+.+ +|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ .
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plE----dNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGR 84 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLE----DNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGR 84 (314)
T ss_pred CHHHHHHHHHHHHhc-Cchhhhhhccch----hceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCc
Confidence 578999999999996 888899999999 899999999999999999999999999999999999999999885 4
Q ss_pred cccccCCCCcEEecCCCC-CCCCCccCcHHHHHHHHHHhh-cCCC
Q 032159 83 FHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLL-DQPN 125 (146)
Q Consensus 83 ~HpnV~~~G~icl~~l~~-~~~W~p~~~l~~vl~~i~~ll-~~p~ 125 (146)
|.-| -+||+++-.- .|.|.|+++|...|.+|..+| ..|+
T Consensus 85 FE~n----kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 85 FEVN----KKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred eeeC----ceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 5444 6899999864 458999999999999999988 4454
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.7e-18 Score=146.34 Aligned_cols=112 Identities=32% Similarity=0.650 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC--cccc
Q 032159 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--FFHP 85 (146)
Q Consensus 8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hp 85 (146)
.+..+.|++.+..+.+.++.+...+ +-+.-..+.|.|++||||.+|.|.|+|.||++||.+||.|...+. ++.|
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~vr~~e----~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np 928 (1101)
T KOG0895|consen 853 AKKVQTEWKILPLSLPSGIFVRAYE----DRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP 928 (1101)
T ss_pred HHHHHHHHHhhhccCCCceEEEech----HHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence 3445667777777899999998877 566666899999999999999999999999999999999999974 6899
Q ss_pred ccCCCCcEEecCCCC-----CCCCCccCcHHHHHHHHHHhhcC
Q 032159 86 NVYPSGTVCLSILNE-----DNGWRPAITVKQILVGIQDLLDQ 123 (146)
Q Consensus 86 nV~~~G~icl~~l~~-----~~~W~p~~~l~~vl~~i~~ll~~ 123 (146)
|.|++|++|+++|.. .|.|+|+-++.+||.+||.|...
T Consensus 929 nly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 929 NLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred ccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 999999999999986 46899988999999999999843
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.6e-16 Score=131.98 Aligned_cols=116 Identities=30% Similarity=0.621 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC---
Q 032159 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--- 81 (146)
Q Consensus 5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--- 81 (146)
....+|+++|++.+.++.+.++.+.+.+ ..+....+.|.|+.||||++|+|.|+|.||..||..||.|.+++.
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e----~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~ 356 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDE----GRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGV 356 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccc----cccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccce
Confidence 3468999999999999999999999988 889999999999999999999999999999999999999999986
Q ss_pred ccccccCCCCcEEecCCCC-----CCCCCcc-CcHHHHHHHHHHhhcCC
Q 032159 82 FFHPNVYPSGTVCLSILNE-----DNGWRPA-ITVKQILVGIQDLLDQP 124 (146)
Q Consensus 82 i~HpnV~~~G~icl~~l~~-----~~~W~p~-~~l~~vl~~i~~ll~~p 124 (146)
.+.||.|.+|+||+++|.. .+.|+|. -++.++|..||.+..+-
T Consensus 357 R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 357 RLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred eecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 6899999999999999975 2579999 69999999999998553
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.5e-15 Score=101.70 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 032159 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP 85 (146)
Q Consensus 6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 85 (146)
.+.-||.+|+.+=.+...++...+-.+++++--+..|..+|.||+.|+||+.+|.++|...++||..||+|+|.+++--+
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~ 84 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN 84 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence 34557888888776666666666666655556778999999999999999999999999999999999999999999988
Q ss_pred ccCC-CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhc
Q 032159 86 NVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122 (146)
Q Consensus 86 nV~~-~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~ 122 (146)
.|.. +|.+.-..+.--++|.-.+++..+|..++.++.
T Consensus 85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred ccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 8874 777665444422379999999999999987663
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.4e-09 Score=69.56 Aligned_cols=75 Identities=23% Similarity=0.466 Sum_probs=59.8
Q ss_pred EEEEEEeCCCCCCCCCeeeeccCccc-cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCHHH
Q 032159 59 FPLTLYFSEDYPSKPPKCKFPQGFFH-PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN--PADPAQTDG 134 (146)
Q Consensus 59 f~~~i~fp~~YP~~pP~v~f~t~i~H-pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~--~~~p~n~~a 134 (146)
.-+.+.|+++||+.||.+|...|+-. .-|-.+|+||+.+|..+ +|+.+++++.++.++...+..-. .+.+++.+.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~q-gwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~s 90 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQ-GWSSAYEVERVIMQIAATLVKGGARIEFPAEKSS 90 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccc-cccchhhHHHHHHHHHHHhhccceeEecCcchhh
Confidence 45677899999999999998876543 33446899999999985 99999999999999999986533 456665553
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.80 E-value=3.5e-08 Score=68.30 Aligned_cols=84 Identities=27% Similarity=0.528 Sum_probs=67.0
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeeeccCc---cccccCCCCcEEe---cCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCC
Q 032159 55 EGGYFPLTLYFSEDYPSKPPKCKFPQGF---FHPNVYPSGTVCL---SILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128 (146)
Q Consensus 55 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HpnV~~~G~icl---~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~ 128 (146)
.|+.+.+.|.+|+.||..||.|....+. +-|||+.+|.+|+ +...+ .|.|.-.+.++|.....+|.+ ....
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D--~~~P~~~~~~~l~~a~~lL~~-~~~~ 110 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLD--PWDPEGIIADCLERAIRLLED-GLSG 110 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccC--ccCHHHHHHHHHHHHHHHHHH-hhcC
Confidence 6899999999999999999999888644 6899999999999 66666 899999999999999999873 2222
Q ss_pred CCCHHHHHHHHHh
Q 032159 129 PAQTDGYQLFIQV 141 (146)
Q Consensus 129 p~n~~aa~~~~~~ 141 (146)
.-..|.++.+..-
T Consensus 111 ~~~~d~~~Ef~sY 123 (133)
T PF14461_consen 111 DNEDDFADEFQSY 123 (133)
T ss_pred CchHHHHHHHHHH
Confidence 2245555555443
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.52 E-value=4.5e-07 Score=61.82 Aligned_cols=79 Identities=23% Similarity=0.492 Sum_probs=54.5
Q ss_pred CCccEEEEEEcCCCCCCCCCCEE--EEEEEeCCCCCCCCCeeeeccCc-----cccccCCCCcEEecCCCCCCCCCc-cC
Q 032159 37 VNLMIWECIIPGKTGTDWEGGYF--PLTLYFSEDYPSKPPKCKFPQGF-----FHPNVYPSGTVCLSILNEDNGWRP-AI 108 (146)
Q Consensus 37 ~~~~~w~~~i~gp~~tpy~gg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HpnV~~~G~icl~~l~~~~~W~p-~~ 108 (146)
..+....++|. -.|+|..| -+.|.+|.+||.+||.|...... -+.+|+.+|+|.+..|.. |.+ ..
T Consensus 30 ~~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~---W~~~~s 102 (121)
T PF05743_consen 30 KLLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQN---WNPPSS 102 (121)
T ss_dssp EEEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT-----TTTS
T ss_pred heEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhcc---CCCCCC
Confidence 34445555554 25788777 57778999999999999776321 244999999999999876 988 66
Q ss_pred cHHHHHHHHHHhhc
Q 032159 109 TVKQILVGIQDLLD 122 (146)
Q Consensus 109 ~l~~vl~~i~~ll~ 122 (146)
+|.+++..+...|.
T Consensus 103 ~L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 103 NLVDLVQELQAVFS 116 (121)
T ss_dssp -HHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998885
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=1.7e-05 Score=61.93 Aligned_cols=85 Identities=24% Similarity=0.508 Sum_probs=64.4
Q ss_pred CCCCccEEEEEEcCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeeeccC-----ccccccCCCCcEEecCCCCCCCCCcc
Q 032159 35 GSVNLMIWECIIPGKTGTDWEGGYFP--LTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTVCLSILNEDNGWRPA 107 (146)
Q Consensus 35 ~~~~~~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HpnV~~~G~icl~~l~~~~~W~p~ 107 (146)
...+++...++|. .+|.|.+|. +.|.+.+.||..||.|..... -.|-+|+.+|+|.+..|.+ |.+.
T Consensus 48 ~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~---W~~p 120 (365)
T KOG2391|consen 48 RSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHN---WDPP 120 (365)
T ss_pred CccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhcc---CCCc
Confidence 3355555444444 578887765 677789999999999966521 1399999999999999986 8655
Q ss_pred -CcHHHHHHHHHHhhcCCCC
Q 032159 108 -ITVKQILVGIQDLLDQPNP 126 (146)
Q Consensus 108 -~~l~~vl~~i~~ll~~p~~ 126 (146)
..|..+++.|-+.|.++.+
T Consensus 121 ssdLv~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 121 SSDLVGLIQELIAAFSEDPP 140 (365)
T ss_pred cchHHHHHHHHHHHhcCCCc
Confidence 5899999999999977544
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.76 E-value=2.4e-05 Score=54.02 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHc-------CCCCeEEeecCCCCCCCccEEEEEEcC-CCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 032159 6 IARGRLTEERKAWRKN-------HPHGFVAKPETKDGSVNLMIWECIIPG-KTGTDWEGGYFPLTLYFSEDYPSKPPKCK 77 (146)
Q Consensus 6 ~~~~Rl~~El~~l~~~-------~~~~~~~~~~~~~~~~~~~~w~~~i~g-p~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 77 (146)
.-..||..||..|.+- ..+.+.+.. + .+=..|.+.--- -..-- -.|.+++.+|..||..||.+.
T Consensus 24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n----~~GT~W~GkCW~~h~l~k---YEF~~eFdIP~tYP~t~pEi~ 95 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYVENNKENDNDWFRLES-N----KEGTRWFGKCWYIHNLLK---YEFDLEFDIPVTYPTTAPEIA 95 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---EEEEE------TTSSEEEEEEEEEETTEE---EEEEEEEE--TTTTTS----B
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeEEecc-C----CCCCccccEEEEEeeeee---EEEeeecCCCccCCCCCccee
Confidence 4578999999988541 222333321 1 233334322110 00011 246677778999999999998
Q ss_pred eccC-ccccccCCCCcEEecCCCCCCCC---CccCcHHHHH
Q 032159 78 FPQG-FFHPNVYPSGTVCLSILNEDNGW---RPAITVKQIL 114 (146)
Q Consensus 78 f~t~-i~HpnV~~~G~icl~~l~~~~~W---~p~~~l~~vl 114 (146)
...- --..-.|..|+||++.-... =| .|.++|...|
T Consensus 96 lPeLdGKTaKMYRGGkIClt~HFkP-LWakN~PkfGIaHal 135 (161)
T PF08694_consen 96 LPELDGKTAKMYRGGKICLTDHFKP-LWAKNVPKFGIAHAL 135 (161)
T ss_dssp -GGGTTT-SSBCCCCBB---TTHHH-HHHCTTTT--HHHHH
T ss_pred ccccCCchhhhhcCceEeeecccch-hhhhcCCchhHHHHH
Confidence 7531 12344567899999875431 24 3455555443
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.0039 Score=42.59 Aligned_cols=89 Identities=21% Similarity=0.362 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCC----------EEEEEEEeCCCCCCCCCe
Q 032159 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG----------YFPLTLYFSEDYPSKPPK 75 (146)
Q Consensus 6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~ 75 (146)
.-.+||..||+.|......+- +..+|.+. .=.-++||-|-|. .|.+++.+|-.||..+|.
T Consensus 27 ~wvqrlkeey~sli~yvqnnk-------~~d~dwfr---lesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape 96 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAYVQNNK-------SNDNDWFR---LESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE 96 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-------ccCCcceE---eccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence 457899999999865311110 11133332 2244778888774 355666779999999999
Q ss_pred eeeccC-ccccccCCCCcEEecCCCCCCCCC
Q 032159 76 CKFPQG-FFHPNVYPSGTVCLSILNEDNGWR 105 (146)
Q Consensus 76 v~f~t~-i~HpnV~~~G~icl~~l~~~~~W~ 105 (146)
+....- --.-..|..|+||+.--... -|.
T Consensus 97 ialpeldgktakmyrggkiclt~hfkp-lwa 126 (167)
T KOG3357|consen 97 IALPELDGKTAKMYRGGKICLTDHFKP-LWA 126 (167)
T ss_pred ccccccCchhhhhhcCceEeeccccch-hhh
Confidence 876421 11223466799999755431 454
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.67 E-value=0.01 Score=38.90 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 032159 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82 (146)
Q Consensus 9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (146)
.+.+.|+..|..--+... ..... .+...+.+.+.+ ...+.-....+++.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIES----KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTS----SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-ccccc----CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888876544444 11111 455566777732 2333445568999999999999999999876543
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.43 E-value=0.042 Score=37.41 Aligned_cols=84 Identities=18% Similarity=0.313 Sum_probs=53.3
Q ss_pred CccEEEEEEcC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc-------cccC-----CCCcEEecCCCCCCC
Q 032159 38 NLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH-------PNVY-----PSGTVCLSILNEDNG 103 (146)
Q Consensus 38 ~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H-------pnV~-----~~G~icl~~l~~~~~ 103 (146)
.-..|.+ |.| -+.+.|.+..-.+-|.+|+.||..+|.+.+..+... ||-. -.|+.--..-.....
T Consensus 22 g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~ 100 (122)
T PF14462_consen 22 GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNP 100 (122)
T ss_pred CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCC
Confidence 4444544 565 445669999999999999999999988777654321 2110 012211111111237
Q ss_pred CCccC-cHHHHHHHHHHhhc
Q 032159 104 WRPAI-TVKQILVGIQDLLD 122 (146)
Q Consensus 104 W~p~~-~l~~vl~~i~~ll~ 122 (146)
|.|.. +|.+.|..|...|.
T Consensus 101 W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 101 WRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CCCCCCcHHHHHHHHHHHHh
Confidence 99988 89999988887764
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.13 E-value=0.011 Score=42.19 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=59.5
Q ss_pred CCccEEEEEEcCCCCCCCC--CCEE---EEEEEeCCCCCCCCCeeeeccCcc---ccccCCC-----CcEEecCCCCCCC
Q 032159 37 VNLMIWECIIPGKTGTDWE--GGYF---PLTLYFSEDYPSKPPKCKFPQGFF---HPNVYPS-----GTVCLSILNEDNG 103 (146)
Q Consensus 37 ~~~~~w~~~i~gp~~tpy~--gg~f---~~~i~fp~~YP~~pP~v~f~t~i~---HpnV~~~-----G~icl~~l~~~~~ 103 (146)
..-..|.|.+.+....+=+ +|+. .+.|.|+.+||..+|.|.++.+.| +||+... ..+|+---.-. .
T Consensus 28 ~~~~~~~V~l~~~~~~~~~~~~gir~~E~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~-e 106 (162)
T PF14457_consen 28 WDEVEWIVELPTRDRVPGESPVGIRRVERVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWS-E 106 (162)
T ss_pred ccceEEEEEecCcccccCCCCCCccccceEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHH-H
Confidence 3334666666652222222 2333 367889999999999888776544 5777654 67998765543 7
Q ss_pred CCccCcHHHHHHHHHHhhcC
Q 032159 104 WRPAITVKQILVGIQDLLDQ 123 (146)
Q Consensus 104 W~p~~~l~~vl~~i~~ll~~ 123 (146)
|.+..++..+|..|...|.+
T Consensus 107 ~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 107 WRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred hhhccCHHHHHHHHHHHHHH
Confidence 99999999999999998843
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.12 E-value=0.18 Score=32.66 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.0
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159 55 EGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (146)
Q Consensus 55 ~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (146)
..-.+.+.+.+|++||..+|.+.+.+
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568899999999999999998765
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=91.77 E-value=0.36 Score=37.72 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (146)
Q Consensus 7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (146)
..++|.+|+.++..+....+. . + +++...++++. ++- ....++|.++.+||.++|.+...-++ ...
T Consensus 100 ~ys~ll~EIe~IGW~kl~~i~--~-d----~~ls~i~l~~~---D~~---R~H~l~l~l~~~yp~~~p~~~~~~P~-~~~ 165 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKLVQIQ--F-D----DDLSTIKLKIF---DSS---RQHYLELKLPSNYPFEPPSCSLDLPI-PFS 165 (291)
T ss_dssp GC-CHHHHHHHHHCGCCEEEE--E------CCCSEEEEEEE---TTC---EEEEEEEETTTTTTTSEEEECS-TTS--HH
T ss_pred HHHHHHHHHHHhccccceEEe--c-C----CCccEEEEEEE---cCC---ceEEEEEEECCCCCCCCceeeCCCCc-chh
Confidence 356788899988666543332 1 2 68888888887 221 58889999999999999986554332 111
Q ss_pred cCCCCcEEecCCCCCCCCCc-cCcHHHHHHHHHHhh
Q 032159 87 VYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLL 121 (146)
Q Consensus 87 V~~~G~icl~~l~~~~~W~p-~~~l~~vl~~i~~ll 121 (146)
. .|.+ ..++.+++...+..+
T Consensus 166 -------------~--~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 166 -------------L--SWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp -------------H--HHHCHT-SHHHHHHHHHHHH
T ss_pred -------------h--hhcccccCHHHHHHHHHHHH
Confidence 1 4887 668888877666555
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.50 E-value=2.2 Score=37.58 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCE-EEEEEEeCCCCCCC-CCeeeeccC
Q 032159 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY-FPLTLYFSEDYPSK-PPKCKFPQG 81 (146)
Q Consensus 9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~-f~~~i~fp~~YP~~-pP~v~f~t~ 81 (146)
+-|..|+.-|- ..-.++.++-.+ ..-..-.+++.||--.. .|.+ .++.|.||.+||.+ +|+++|..+
T Consensus 423 QnLgeE~S~Ig-~k~~nV~fEkid----va~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIG-VKIRNVNFEKID----VADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhh-ccccccceEeec----cccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 44666666553 233344444222 23334566777654332 3434 47889999999986 799999753
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.94 E-value=2.6 Score=31.42 Aligned_cols=63 Identities=25% Similarity=0.370 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCCCe-EEeecCCCCCCCccEEEEEEcCCCCC--CCCCCEEEEEEEeCCCCCCCCCeeee
Q 032159 9 GRLTEERKAWRKNHPHGF-VAKPETKDGSVNLMIWECIIPGKTGT--DWEGGYFPLTLYFSEDYPSKPPKCKF 78 (146)
Q Consensus 9 ~Rl~~El~~l~~~~~~~~-~~~~~~~~~~~~~~~w~~~i~gp~~t--py~gg~f~~~i~fp~~YP~~pP~v~f 78 (146)
.-..+|+..|...-+... .+.- .+...+.++|.-..+. -|.| .+.+.+.++++||..+|-+.+
T Consensus 5 EeQe~E~EaLeSIY~de~~~i~~------~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 5 EEQEEELEALESIYPDEFKHINS------EDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred HHHHHHHHHHHHhccchhhhhhc------cCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 344566666655433333 2211 2333356666632222 2333 788999999999999999943
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=81.09 E-value=1.7 Score=31.36 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=23.7
Q ss_pred ccCccc---cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhh
Q 032159 79 PQGFFH---PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121 (146)
Q Consensus 79 ~t~i~H---pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll 121 (146)
.|++|| +||+.+|+||+....- |......-+..+...|
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~~-----P~~~~~~~i~~we~~F 129 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNSL-----PKISTLASIEAWEDAF 129 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCcC-----CCccCHHHHHHHHHHH
Confidence 456776 5999999999997543 3343333455554444
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=78.13 E-value=8.2 Score=30.80 Aligned_cols=61 Identities=25% Similarity=0.545 Sum_probs=44.5
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCeeeec-cCccccccCCCCcEEecCCCCCCCCCccC--cHHHHHHHHHHhh
Q 032159 53 DWEGGYFPLTLYFSEDYPSKPPKCKFP-QGFFHPNVYPSGTVCLSILNEDNGWRPAI--TVKQILVGIQDLL 121 (146)
Q Consensus 53 py~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HpnV~~~G~icl~~l~~~~~W~p~~--~l~~vl~~i~~ll 121 (146)
||.|...+-+|.|...||..||-+.|. ..-|+|-... +..|. +|.+.- .+..++..|..+.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L~---~Wd~~dp~~Ll~li~EL~~~Y 124 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSLV---NWDPSDPNCLLNLISELRQLY 124 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchhh---cCCCCCchHHHHHHHHHHHHH
Confidence 688999999999999999999999997 3348884321 23333 598775 5667766666543
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=74.29 E-value=6.7 Score=29.64 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=26.1
Q ss_pred cCccc---cccCCCCcEEecCCCCCCCCCccC-cHHHHHHHHHHhhcC
Q 032159 80 QGFFH---PNVYPSGTVCLSILNEDNGWRPAI-TVKQILVGIQDLLDQ 123 (146)
Q Consensus 80 t~i~H---pnV~~~G~icl~~l~~~~~W~p~~-~l~~vl~~i~~ll~~ 123 (146)
|++|| .||+++|+||+.... .|.. ++.+ +.+....|.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~-----~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR-----LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc-----CCCCcCHHH-HHHHHHHHhC
Confidence 45666 499999999998653 3444 6666 7777666643
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=62.26 E-value=8 Score=21.24 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHc
Q 032159 7 ARGRLTEERKAWRKN 21 (146)
Q Consensus 7 ~~~Rl~~El~~l~~~ 21 (146)
-.+||++|+++|..-
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999999763
No 42
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=55.38 E-value=48 Score=20.86 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=29.2
Q ss_pred cEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159 40 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (146)
Q Consensus 40 ~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (146)
.+|.+-+.|+.+.--..-+=++.+.+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 57999999987765555677788889888886 66666666544
No 43
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=47.24 E-value=18 Score=24.83 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=18.7
Q ss_pred CCccEEEEEEcCCCCCCCC-CCEEEEE
Q 032159 37 VNLMIWECIIPGKTGTDWE-GGYFPLT 62 (146)
Q Consensus 37 ~~~~~w~~~i~gp~~tpy~-gg~f~~~ 62 (146)
.|...|.|++.|++||+.. ..+|-+.
T Consensus 45 Gd~~~ytVtV~G~dGs~~~~n~tf~~~ 71 (139)
T PF04881_consen 45 GDPEWYTVTVQGPDGSIRKSNNTFMYK 71 (139)
T ss_pred CCCcceEEEEECCCCcceeccccchhe
Confidence 5777889999999998763 3444443
No 44
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.58 E-value=76 Score=23.22 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCee
Q 032159 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKC 76 (146)
Q Consensus 4 ~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 76 (146)
+.-..+||++|++.+.++-...++.-|.- +-...+.+.+.-.+++ ..|.++-.+-|++
T Consensus 117 ~~k~~~~iq~EIraviRQItasVtfLP~L----e~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 117 RVKDLKRIQNEIRAVIRQITASVTFLPLL----EEICTFDVLIYTDKDT-----------EVPEKWDESGPKL 174 (203)
T ss_pred chhHHHHHHHHHHHHHHHHhhheeecccc----cceeEEEEEEEeCCCc-----------cCCcchhcCCCeE
Confidence 34568999999999999877777777766 4556666666654444 4566666665554
No 45
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=43.18 E-value=28 Score=20.52 Aligned_cols=19 Identities=16% Similarity=0.618 Sum_probs=12.2
Q ss_pred CCCccCcHHHHHHHHHHhh
Q 032159 103 GWRPAITVKQILVGIQDLL 121 (146)
Q Consensus 103 ~W~p~~~l~~vl~~i~~ll 121 (146)
+|.|.++|.+++.......
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999998766544
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=42.53 E-value=33 Score=27.23 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.9
Q ss_pred CEEEEEEEeCCCCCCCCCeeeeccC
Q 032159 57 GYFPLTLYFSEDYPSKPPKCKFPQG 81 (146)
Q Consensus 57 g~f~~~i~fp~~YP~~pP~v~f~t~ 81 (146)
-.+.+.+..++.||...|.|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4678889999999999999998765
No 47
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=41.31 E-value=58 Score=25.01 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=31.1
Q ss_pred CCccEEEEEEcCCCCCCCCC---CEEEEEEEeC-----CCCCCCCCeeeeccCcc
Q 032159 37 VNLMIWECIIPGKTGTDWEG---GYFPLTLYFS-----EDYPSKPPKCKFPQGFF 83 (146)
Q Consensus 37 ~~~~~w~~~i~gp~~tpy~g---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~ 83 (146)
.|..-|++....-+.-.-+| ..|+.++++. -+-||+||+|..+++-|
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 45666777777433223333 3456666664 68999999999998755
No 48
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=40.65 E-value=37 Score=27.20 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCEEEEEEEeCCCCCCCCCeeeecc
Q 032159 56 GGYFPLTLYFSEDYPSKPPKCKFPQ 80 (146)
Q Consensus 56 gg~f~~~i~fp~~YP~~pP~v~f~t 80 (146)
+-.|-+.|.+|..||...|.++|++
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3368888999999999999999875
No 49
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.48 E-value=88 Score=23.05 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=26.8
Q ss_pred CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcC
Q 032159 90 SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123 (146)
Q Consensus 90 ~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~ 123 (146)
.+..|++++.. .|+|.+|.++-+.-++.++.+
T Consensus 135 ~~~f~~sIlDr--~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 135 GSYFCLSILDR--YYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhhHHHHHh--hhCCCCCHHHHHHHHHHHHHH
Confidence 35799999988 899999999988877776644
No 50
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=39.40 E-value=69 Score=20.57 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=20.4
Q ss_pred CCCCEEEEEEEeCCCCCCCCCeeeeccC
Q 032159 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQG 81 (146)
Q Consensus 54 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (146)
-+|..+.|.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45677888888889999 589988864
No 51
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=39.39 E-value=42 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.621 Sum_probs=21.4
Q ss_pred CCEEEEEEEeCCCCC-CCCCeeeec
Q 032159 56 GGYFPLTLYFSEDYP-SKPPKCKFP 79 (146)
Q Consensus 56 gg~f~~~i~fp~~YP-~~pP~v~f~ 79 (146)
.|.|.|.-.+|-.|| ..||-|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 388999999999999 899999875
No 52
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=33.03 E-value=58 Score=23.77 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.5
Q ss_pred CCEEEEEEEeCCCCCCCCCeeeec
Q 032159 56 GGYFPLTLYFSEDYPSKPPKCKFP 79 (146)
Q Consensus 56 gg~f~~~i~fp~~YP~~pP~v~f~ 79 (146)
.|.|.|.=.+|--||..+|-|.|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 488999999999999999999886
No 53
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=30.43 E-value=35 Score=20.02 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHhHhhhC
Q 032159 129 PAQTDGYQLFIQVLYWFI 146 (146)
Q Consensus 129 p~n~~aa~~~~~~~~~f~ 146 (146)
.-|++.+++..+|++.|+
T Consensus 33 ~~nP~l~q~I~~n~e~Fl 50 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFL 50 (59)
T ss_dssp CCSHHHHHHHHHTHHHHH
T ss_pred ccCHHHHHHHHHCHHHHH
Confidence 468999999999999984
No 54
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=30.09 E-value=50 Score=24.62 Aligned_cols=55 Identities=24% Similarity=0.418 Sum_probs=42.7
Q ss_pred CCCCeeeeccCccccccC--CCCcEEecCCCCCCCC--CccCcHHHHHHHHHHhhcCCCCC
Q 032159 71 SKPPKCKFPQGFFHPNVY--PSGTVCLSILNEDNGW--RPAITVKQILVGIQDLLDQPNPA 127 (146)
Q Consensus 71 ~~pP~v~f~t~i~HpnV~--~~G~icl~~l~~~~~W--~p~~~l~~vl~~i~~ll~~p~~~ 127 (146)
..||-|-|-.+.|...|+ +-|.|-..+... +| .|+-.+.+-|.-|..+|..|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelana--grplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANA--GRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhc--CCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 468999999999999887 567666665555 55 68888999888888888777654
No 55
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=29.40 E-value=38 Score=19.99 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 032159 8 RGRLTEERKAW 18 (146)
Q Consensus 8 ~~Rl~~El~~l 18 (146)
.+||++||+++
T Consensus 36 r~rL~kEL~d~ 46 (59)
T PF12065_consen 36 RQRLRKELQDM 46 (59)
T ss_pred HHHHHHHHHHc
Confidence 46889999887
No 56
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=28.91 E-value=56 Score=28.13 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCCCCCEEEEEEEeCCCCCC---CCCeeeeccC
Q 032159 52 TDWEGGYFPLTLYFSEDYPS---KPPKCKFPQG 81 (146)
Q Consensus 52 tpy~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 81 (146)
+||.=|.|.+ +.+|++||+ +-|.++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5787788886 467899998 4799999986
No 57
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.09 E-value=81 Score=22.30 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.6
Q ss_pred CEEEEEEEeCCCCC-----CCCCeeeec
Q 032159 57 GYFPLTLYFSEDYP-----SKPPKCKFP 79 (146)
Q Consensus 57 g~f~~~i~fp~~YP-----~~pP~v~f~ 79 (146)
|.|.|.=.+|--|| ..||-|.|.
T Consensus 73 G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 73 GRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 88999999999999 789998875
No 58
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=26.37 E-value=20 Score=18.40 Aligned_cols=17 Identities=24% Similarity=0.684 Sum_probs=9.4
Q ss_pred ccccccCCCCc-EEecCC
Q 032159 82 FFHPNVYPSGT-VCLSIL 98 (146)
Q Consensus 82 i~HpnV~~~G~-icl~~l 98 (146)
.|||.++.+|+ .|-...
T Consensus 2 ~yHPg~~~~g~W~CC~q~ 19 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQT 19 (32)
T ss_dssp EE-SS-EETTCESSSS-S
T ss_pred CcCCCcccCCcCcCCCCc
Confidence 48999988775 554443
No 59
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=24.84 E-value=1.1e+02 Score=24.37 Aligned_cols=40 Identities=15% Similarity=0.342 Sum_probs=27.3
Q ss_pred cEEEEEEcCCCCC-CCCCCEEEEEEE---eCCCCCCCCCeeeecc
Q 032159 40 MIWECIIPGKTGT-DWEGGYFPLTLY---FSEDYPSKPPKCKFPQ 80 (146)
Q Consensus 40 ~~w~~~i~gp~~t-py~gg~f~~~i~---fp~~YP~~pP~v~f~t 80 (146)
.+|...+.|-.++ -|++|.+++++. |-.- =..-|++||-.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~-~qR~PriRfG~ 240 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL-YQRGPRIRFGM 240 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccc-cccCCceEeeE
Confidence 3688999995555 788999988765 3322 23456998853
No 60
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=23.23 E-value=87 Score=20.61 Aligned_cols=19 Identities=37% Similarity=0.863 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCCCCCCCEEEE
Q 032159 41 IWECIIPGKTGTDWEGGYFPL 61 (146)
Q Consensus 41 ~w~~~i~gp~~tpy~gg~f~~ 61 (146)
+|.+.+-| +..|+|-.|+|
T Consensus 2 kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred ceEEEecC--CeeeecceEEE
Confidence 69999998 56899999986
No 61
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.89 E-value=1.3e+02 Score=21.29 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=25.5
Q ss_pred ccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHh
Q 032159 86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120 (146)
Q Consensus 86 nV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~l 120 (146)
-|+++|+|..-. . .+++.-+...|+..|+.+
T Consensus 125 vId~dG~I~~~~--~--~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 125 VIDPDGKIRYVW--R--KVKVKGHADEVLAALKKL 155 (157)
T ss_pred EECCCCeEEEEe--c--CCCCcccHHHHHHHHHHh
Confidence 468889998876 3 688889999999988865
No 62
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=20.91 E-value=1.1e+02 Score=17.47 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHcCC
Q 032159 5 GIARGRLTEERKAWRKNHP 23 (146)
Q Consensus 5 ~~~~~Rl~~El~~l~~~~~ 23 (146)
..+..||..|+..+...+.
T Consensus 21 ~is~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 21 KISKERIREELEKILSSPN 39 (64)
T ss_dssp GS-HHHHHHHHHHHHTSTT
T ss_pred cCCHHHHHHHHHHHHcCCC
Confidence 4578899999999977553
Done!