Query 032160
Match_columns 146
No_of_seqs 107 out of 224
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 10:23:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2729 ER vesicle integral me 100.0 2.5E-59 5.4E-64 354.6 16.0 135 1-135 3-137 (137)
2 PF03311 Cornichon: Cornichon 100.0 4.5E-54 9.7E-59 324.0 14.8 127 1-127 1-128 (128)
3 PLN00174 predicted protein; Pr 100.0 2E-48 4.4E-53 301.2 14.5 110 22-131 29-139 (160)
4 PF04144 SCAMP: SCAMP family; 76.6 19 0.00041 28.3 7.8 77 6-92 100-177 (177)
5 PRK13553 fumarate reductase cy 75.4 50 0.0011 28.0 11.4 118 4-141 120-242 (258)
6 PF01405 PsbT: Photosystem II 67.6 9.7 0.00021 22.1 3.1 22 4-25 2-23 (29)
7 PRK11875 psbT photosystem II r 64.4 12 0.00026 22.0 3.1 22 4-25 2-23 (31)
8 TIGR00945 tatC Twin arginine t 59.6 59 0.0013 26.1 7.5 43 45-94 47-89 (215)
9 CHL00031 psbT photosystem II p 57.7 13 0.00027 22.2 2.4 22 4-25 2-23 (33)
10 CHL00182 tatC Sec-independent 57.6 61 0.0013 26.9 7.4 25 66-90 83-107 (249)
11 TIGR01912 TatC-Arch Twin argin 56.7 67 0.0015 26.4 7.5 40 45-90 55-94 (237)
12 PRK10921 twin-arginine protein 54.6 71 0.0015 26.6 7.4 27 67-94 74-100 (258)
13 PF07584 BatA: Aerotolerance r 52.8 57 0.0012 21.8 5.5 40 68-107 7-48 (77)
14 COG0805 TatC Sec-independent p 51.6 72 0.0016 26.9 6.9 28 67-95 77-104 (255)
15 cd07153 Fur_like Ferric uptake 42.9 6.9 0.00015 27.6 -0.4 38 76-113 14-52 (116)
16 PF00902 TatC: Sec-independent 38.9 2E+02 0.0043 22.8 11.4 40 45-90 51-90 (215)
17 COG0841 AcrB Cation/multidrug 35.9 2.2E+02 0.0047 28.5 8.5 94 49-142 450-553 (1009)
18 PF04893 Yip1: Yip1 domain; I 35.5 69 0.0015 23.1 4.1 39 93-131 2-41 (172)
19 KOG3801 Uncharacterized conser 34.4 41 0.00088 24.5 2.5 30 80-109 24-62 (94)
20 PRK09462 fur ferric uptake reg 30.7 14 0.00031 27.6 -0.3 36 77-112 32-68 (148)
21 PF11044 TMEMspv1-c74-12: Plec 29.9 1.3E+02 0.0029 19.2 4.0 23 5-27 4-29 (49)
22 PRK12592 putative monovalent c 27.3 74 0.0016 24.1 3.0 40 70-109 82-123 (126)
23 PF09889 DUF2116: Uncharacteri 26.9 1.9E+02 0.0042 19.1 4.7 37 94-130 13-56 (59)
24 KOG3249 Uncharacterized conser 25.2 3E+02 0.0064 22.2 6.2 73 42-114 84-178 (181)
25 PF00873 ACR_tran: AcrB/AcrD/A 24.8 3E+02 0.0066 26.9 7.4 74 53-126 458-543 (1021)
26 PF03595 SLAC1: Voltage-depend 23.8 4.2E+02 0.009 21.8 7.6 87 5-91 104-199 (330)
27 PF01475 FUR: Ferric uptake re 22.4 33 0.00071 24.4 0.3 34 78-111 23-57 (120)
28 PF11119 DUF2633: Protein of u 20.4 43 0.00094 22.4 0.5 27 107-134 5-31 (59)
No 1
>KOG2729 consensus ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-59 Score=354.63 Aligned_cols=135 Identities=44% Similarity=0.760 Sum_probs=131.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCChHHhhhhcCcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032160 1 MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLV 80 (146)
Q Consensus 1 m~~~~~~~i~a~ll~~~ll~~~vy~li~l~DLe~D~iNP~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~W~~~llnlPll 80 (146)
|.+++++|..+++.+++++++++||+||++|||+||+||+|+|||+|++|+||++.||++|++++++|||+++++|+|++
T Consensus 3 ~~~~~~~~~~~~l~~~~li~~~iy~vI~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~KOGlfLl~g~W~~fllnlP~l 82 (137)
T KOG2729|consen 3 FTFAAFLYTLSLLVCAALIFLQIYFVICLADLETDYINPIDLCSRLNRLVLPEFILHGLLCLLFLLTGHWFMFLLNLPLL 82 (137)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032160 81 CYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFFALVIAKLAMAGFEA 135 (146)
Q Consensus 81 ~y~~~~y~~r~~l~D~TeIf~~L~~~kk~~~iKl~fyll~Ff~~ly~mi~~lv~~ 135 (146)
+||+++|.+|+|++|||||||+|++|||||++|+|||+++||+|+||||+|++++
T Consensus 83 ~y~~~~y~~r~~l~D~TeI~n~L~~~~k~~~~KL~fyll~FF~yly~mI~slv~~ 137 (137)
T KOG2729|consen 83 AYNAWLYMKRPHLYDPTEIFNTLSSEKKERWIKLAFYLLSFFYYLYWMIYSLVSS 137 (137)
T ss_pred HHHHHHHHcCCcccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999875
No 2
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=100.00 E-value=4.5e-54 Score=324.04 Aligned_cols=127 Identities=45% Similarity=0.905 Sum_probs=125.5
Q ss_pred ChhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccccCChHHhhhhcCcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032160 1 MALIFL-FWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPL 79 (146)
Q Consensus 1 m~~~~~-~~i~a~ll~~~ll~~~vy~li~l~DLe~D~iNP~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~W~~~llnlPl 79 (146)
|+++.+ .|++|++++++++++++||++++||||+||+||+|+|||+||+|+||+++|++++++++++|||+++++|+|+
T Consensus 1 m~~~~~~~~i~alll~~~ll~~~vy~ii~l~DLe~D~iNp~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~w~~~llnlPl 80 (128)
T PF03311_consen 1 MAFDFIVLWILALLLTAALLFIVVYFIICLSDLECDYINPIDLCSRLNPLVLPEYIIHGFLCLLFLLTGHWFLFLLNLPL 80 (128)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032160 80 VCYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFFALVIAK 127 (146)
Q Consensus 80 l~y~~~~y~~r~~l~D~TeIf~~L~~~kk~~~iKl~fyll~Ff~~ly~ 127 (146)
++||+++|.+|+|++|||||||+|+++||+|++|+|||+++||+|+||
T Consensus 81 ~~y~~~~~~~~~~l~D~T~If~~L~~~kk~~~iKl~~yll~ff~yly~ 128 (128)
T PF03311_consen 81 LAYHIYRYFRRQHLYDPTEIFNQLKREKKESFIKLGFYLLLFFYYLYR 128 (128)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999996
No 3
>PLN00174 predicted protein; Provisional
Probab=100.00 E-value=2e-48 Score=301.24 Aligned_cols=110 Identities=27% Similarity=0.499 Sum_probs=106.0
Q ss_pred HHHHHHhhhhcccccCChHHhhhhcCcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCccchhhhhh
Q 032160 22 TFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKRKHLIDVTEVFR 101 (146)
Q Consensus 22 ~vy~li~l~DLe~D~iNP~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~W~~~llnlPll~y~~~~y~~r~~l~D~TeIf~ 101 (146)
..|.-=.+||||+||+||+|+|+|+|++|+||+++|+++|++++++|+|+++++|+|+++||+++|.+|+|++|||||||
T Consensus 29 ~~~~~~~lsDLE~DYiNPiD~CnrLN~lVlPEyiiH~~l~lLfLltG~W~~fLLNlPll~Yhv~~y~~r~hL~D~TeIfn 108 (160)
T PLN00174 29 LGYTYKLLQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFLSIAFVIRGWWIVGFLNFPFIFYNFAQWYEGKHQLDSAQIFN 108 (160)
T ss_pred hcchHHHHHHhhhccCCHHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 34555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 032160 102 NLKVEKKFRLAKLGFYVIFFALVIA-KLAMA 131 (146)
Q Consensus 102 ~L~~~kk~~~iKl~fyll~Ff~~ly-~mi~~ 131 (146)
+|++|||+|++|+|||+++||+|+| |||++
T Consensus 109 ~L~~~kKe~~iKLaFYLl~FF~~ly~~mI~~ 139 (160)
T PLN00174 109 VLSRELRVIKAKSAFFIIIVIYTIWEWMIWV 139 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999 99986
No 4
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=76.61 E-value=19 Score=28.27 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccCChHHhhhhcCcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 032160 6 LFWFLMSAINIALIASTFYQLLCLLDLE-SDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84 (146)
Q Consensus 6 ~~~i~a~ll~~~ll~~~vy~li~l~DLe-~D~iNP~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~W~~~llnlPll~y~~ 84 (146)
+-|...++...+-+..++++.+-..+.- +-.++.+|.-++ |.. .....++.+.-|..-.+....+...+
T Consensus 100 ~~f~~ff~~~~~~i~f~i~~aIG~p~~G~~G~i~ai~~~~~-~~~---------vgi~~~I~a~~w~~~~~~~~~~l~kv 169 (177)
T PF04144_consen 100 FRFMWFFFFFFVHIIFCIIMAIGIPGWGSCGWITAIDVFSN-NKA---------VGILMLIVAILWTLEAVLSFWLLKKV 169 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHcc-Cch---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777888999999888764 889999999888 773 34444566778888888888889999
Q ss_pred HHHhhccC
Q 032160 85 NLYMKRKH 92 (146)
Q Consensus 85 ~~y~~r~~ 92 (146)
+++.|++|
T Consensus 170 ~~~yR~~G 177 (177)
T PF04144_consen 170 HRYYRGTG 177 (177)
T ss_pred HHHhcCCC
Confidence 99999875
No 5
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=75.39 E-value=50 Score=28.02 Aligned_cols=118 Identities=18% Similarity=0.277 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hhcccccCChHHhhhhcCcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032160 4 IFLFWFLMSAINIALIASTFYQLLCL-LDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCY 82 (146)
Q Consensus 4 ~~~~~i~a~ll~~~ll~~~vy~li~l-~DLe~D~iNP~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~W~~~llnlPll~y 82 (146)
|...|.+=.+--.+++++...|+... .|.++ +.|.....|+-. .+.|..-++.+|...+
T Consensus 120 DT~lW~~Q~iTG~ilf~~~~~Hl~~i~~~~~~--Ig~~~Sa~rv~~------------------~~~w~fYlvlL~~v~l 179 (258)
T PRK13553 120 DTSLWFIQAFTGFAMFFLASVHLYVMLTNPDK--IGPYGSSDRVVS------------------QNMWLLYIVLLFAVEL 179 (258)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhcCccc--cCchhhHHHHhC------------------CcHHHHHHHHHHHHHH
Confidence 56788887777777788888887643 44443 666666665432 2357777888888888
Q ss_pred HHHHHhh----ccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 032160 83 HVNLYMK----RKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFFALVIAKLAMAGFEALAGKDE 141 (146)
Q Consensus 83 ~~~~y~~----r~~l~D~TeIf~~L~~~kk~~~iKl~fyll~Ff~~ly~mi~~lv~~~~~~~~ 141 (146)
|..-=.- +=|..+-......=++-+|-.++-.++++++-...+++.+.--.+++..++|
T Consensus 180 H~~iGLyR~~VKWG~~~~~~~q~~R~~~~~v~~~i~v~f~~lGl~sL~af~~ig~~~~~~~~~ 242 (258)
T PRK13553 180 HGSIGLYRLAVKWGWFEGKNPKESRKKLKKVKWALSVFFLVLGLLTLAAYIKIGYENADNGIE 242 (258)
T ss_pred HHHHhhhheeeEEEeecCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCc
Confidence 8643222 3366555444433445555666666777777777777765555555554444
No 6
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=67.55 E-value=9.7 Score=22.05 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032160 4 IFLFWFLMSAINIALIASTFYQ 25 (146)
Q Consensus 4 ~~~~~i~a~ll~~~ll~~~vy~ 25 (146)
|+++|.+.++.+.+.+|.++++
T Consensus 2 Ea~vY~~ll~~tlgilffAI~F 23 (29)
T PF01405_consen 2 EALVYTFLLIGTLGILFFAIFF 23 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhHHHHHHHHHHHHHHhhhhc
Confidence 7899999999888888887764
No 7
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=64.38 E-value=12 Score=22.00 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032160 4 IFLFWFLMSAINIALIASTFYQ 25 (146)
Q Consensus 4 ~~~~~i~a~ll~~~ll~~~vy~ 25 (146)
|+++|.+-++.+.+.+|..+++
T Consensus 2 Eal~Ytfll~~tlgiiFFAIfF 23 (31)
T PRK11875 2 ESFAYILILTLALVTLFFAIAF 23 (31)
T ss_pred hhHHHHHHHHHHHHHHHHhhhc
Confidence 7889999998888888887764
No 8
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=59.58 E-value=59 Score=26.12 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=29.1
Q ss_pred hcCcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCcc
Q 032160 45 RINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKRKHLI 94 (146)
Q Consensus 45 ~lN~lv~pE~~~h~~l~~l~ll~g~W~~~llnlPll~y~~~~y~~r~~l~ 94 (146)
+++..-..|... ..+-.+-+..+.++.|...|++|++.+ +|++
T Consensus 47 ~li~t~~~e~f~------~~lk~s~~~g~~~~~P~i~yqiw~Fi~-PgLy 89 (215)
T TIGR00945 47 TFIATSPTEPFF------TYIKLSLIVGIILSSPVILYQIWAFIL-PGLY 89 (215)
T ss_pred CeEecCchHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc
Confidence 455555556542 122345577889999999999999887 4444
No 9
>CHL00031 psbT photosystem II protein T
Probab=57.71 E-value=13 Score=22.19 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032160 4 IFLFWFLMSAINIALIASTFYQ 25 (146)
Q Consensus 4 ~~~~~i~a~ll~~~ll~~~vy~ 25 (146)
|+++|.+-++.+.+.+|..+++
T Consensus 2 EalvYtfll~~tlgilFFAI~F 23 (33)
T CHL00031 2 EALVYTFLLVSTLGIIFFAIFF 23 (33)
T ss_pred chhHHHHHHHHHHHHHHHhhee
Confidence 7889999998888888877764
No 10
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=57.63 E-value=61 Score=26.91 Aligned_cols=25 Identities=16% Similarity=0.477 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhc
Q 032160 66 VTGHWIMFLLGVPLVCYHVNLYMKR 90 (146)
Q Consensus 66 l~g~W~~~llnlPll~y~~~~y~~r 90 (146)
-..-+....+..|...|.+|++.+.
T Consensus 83 kls~~~g~~~a~P~i~yqiw~Fi~P 107 (249)
T CHL00182 83 KISFYTGLLISSPFIIYQIILFILP 107 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455788899999999999999884
No 11
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=56.70 E-value=67 Score=26.38 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=27.5
Q ss_pred hcCcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 032160 45 RINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKR 90 (146)
Q Consensus 45 ~lN~lv~pE~~~h~~l~~l~ll~g~W~~~llnlPll~y~~~~y~~r 90 (146)
+++..-..|.. ...+-.+-+..+.+..|...|++|++.+.
T Consensus 55 ~li~~~~~e~f------~~~lk~s~~~g~~~~~P~i~yqiw~Fi~P 94 (237)
T TIGR01912 55 TLIAPSPFAAL------ELRIKSAFFIGLLLASPVLAYEAYRFIKP 94 (237)
T ss_pred eeEEcCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34544455554 22233455788899999999999999874
No 12
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=54.63 E-value=71 Score=26.60 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCcc
Q 032160 67 TGHWIMFLLGVPLVCYHVNLYMKRKHLI 94 (146)
Q Consensus 67 ~g~W~~~llnlPll~y~~~~y~~r~~l~ 94 (146)
..-+....+..|...|.+|++.+ +|++
T Consensus 74 ~sl~~g~~la~P~ilyqiw~Fi~-PgLy 100 (258)
T PRK10921 74 LTFMVSLILSAPVILYQVWAFIA-PALY 100 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 44577889999999999999987 4554
No 13
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=52.76 E-value=57 Score=21.80 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHH-HHHHHHHHhh-ccCccchhhhhhhhHHHH
Q 032160 68 GHWIMFLLGVPL-VCYHVNLYMK-RKHLIDVTEVFRNLKVEK 107 (146)
Q Consensus 68 g~W~~~llnlPl-l~y~~~~y~~-r~~l~D~TeIf~~L~~~k 107 (146)
.+|+.+++.+|. +.+++....+ ++..+-.++.+++...+.
T Consensus 7 P~~L~~Llllp~~i~~~~~~~~~~~~~~fs~~~~l~~~~~~~ 48 (77)
T PF07584_consen 7 PWYLWLLLLLPLPIIIHYFLRRRRRRVRFSSLRLLKRLPPSR 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcccCCHHHHHHhCccc
Confidence 445555666666 4555544444 445566667776544433
No 14
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=51.57 E-value=72 Score=26.87 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCccc
Q 032160 67 TGHWIMFLLGVPLVCYHVNLYMKRKHLID 95 (146)
Q Consensus 67 ~g~W~~~llnlPll~y~~~~y~~r~~l~D 95 (146)
..-+...++..|.++|..|++.++ |+|.
T Consensus 77 ~a~~~gl~~a~P~i~yq~w~FiaP-GLy~ 104 (255)
T COG0805 77 LALFAGLLLALPVILYQLWAFIAP-GLYK 104 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-ccch
Confidence 455778899999999999999987 7763
No 15
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.89 E-value=6.9 Score=27.59 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhccCc-cchhhhhhhhHHHHHHHHHH
Q 032160 76 GVPLVCYHVNLYMKRKHL-IDVTEVFRNLKVEKKFRLAK 113 (146)
Q Consensus 76 nlPll~y~~~~y~~r~~l-~D~TeIf~~L~~~kk~~~iK 113 (146)
+-|+.+..++.-.++++. ++.++|+|.|+.-...|.++
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 346778888888887664 89999999998887776543
No 16
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=38.89 E-value=2e+02 Score=22.85 Aligned_cols=40 Identities=13% Similarity=0.381 Sum_probs=28.8
Q ss_pred hcCcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 032160 45 RINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKR 90 (146)
Q Consensus 45 ~lN~lv~pE~~~h~~l~~l~ll~g~W~~~llnlPll~y~~~~y~~r 90 (146)
+++..-..|... ..+-.+-|....++.|...|+.|++.+.
T Consensus 51 ~li~~~~~e~f~------~~lk~s~~~~~~~~~P~~~yq~w~Fi~P 90 (215)
T PF00902_consen 51 KLIFTSPTEAFF------TYLKLSFFLGLIISLPYILYQIWAFIAP 90 (215)
T ss_pred eEEECChHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 455555555542 2334566888999999999999999886
No 17
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=35.89 E-value=2.2e+02 Score=28.53 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccC--------ccchhh--hhhhhHHHHHHHHHHHHHHH
Q 032160 49 WVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKRKH--------LIDVTE--VFRNLKVEKKFRLAKLGFYV 118 (146)
Q Consensus 49 lv~pE~~~h~~l~~l~ll~g~W~~~llnlPll~y~~~~y~~r~~--------l~D~Te--If~~L~~~kk~~~iKl~fyl 118 (146)
=..=|+.-|...++...+.-.|+..+.-.|+++-.+-+-.++++ ..|..+ ..+.+++.-+.++.-++.++
T Consensus 450 G~~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~L~~~~~~~~~~l 529 (1009)
T COG0841 450 GSTGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPKGFFGWFNRFFDRLEDRYQRGLRWVLRRRALVLLLYL 529 (1009)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34558888889999999999999999999999977666544321 234443 33367777777777777777
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCC
Q 032160 119 IFFALVIAKLAMAGFEALAGKDEN 142 (146)
Q Consensus 119 l~Ff~~ly~mi~~lv~~~~~~~~~ 142 (146)
.++....+-+...=-+-.|.+|+.
T Consensus 530 ~~~~~~~~l~~~vp~~F~P~eD~g 553 (1009)
T COG0841 530 VLLGGSVLLFLKLPKSFLPEEDQG 553 (1009)
T ss_pred HHHHHHHHHHHhCCCccCCcCCCC
Confidence 766655544333223344444443
No 18
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=35.53 E-value=69 Score=23.13 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=22.7
Q ss_pred ccchhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 032160 93 LIDVTEVFRNLKVEKK-FRLAKLGFYVIFFALVIAKLAMA 131 (146)
Q Consensus 93 l~D~TeIf~~L~~~kk-~~~iKl~fyll~Ff~~ly~mi~~ 131 (146)
+.||.|.|++++++++ .+...+...+......+..+..+
T Consensus 2 l~~P~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 41 (172)
T PF04893_consen 2 LFSPREFFRRLRESPRISKSWWLPLLLVILLTLVFGLLSS 41 (172)
T ss_pred ccCHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999988887 22233333333344444444444
No 19
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=34.36 E-value=41 Score=24.47 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcc---------CccchhhhhhhhHHHHHH
Q 032160 80 VCYHVNLYMKRK---------HLIDVTEVFRNLKVEKKF 109 (146)
Q Consensus 80 l~y~~~~y~~r~---------~l~D~TeIf~~L~~~kk~ 109 (146)
..||++.|..|+ ..=||+|+-+..+..||+
T Consensus 24 p~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~ 62 (94)
T KOG3801|consen 24 PQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQ 62 (94)
T ss_pred CcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 359999998763 678999999855544443
No 20
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.70 E-value=14 Score=27.58 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhccCc-cchhhhhhhhHHHHHHHHH
Q 032160 77 VPLVCYHVNLYMKRKHL-IDVTEVFRNLKVEKKFRLA 112 (146)
Q Consensus 77 lPll~y~~~~y~~r~~l-~D~TeIf~~L~~~kk~~~i 112 (146)
-|+.++.+++..++++. +++++|||.|+.-...|.+
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 37788888888887654 8899999998887776654
No 21
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=29.87 E-value=1.3e+02 Score=19.18 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHH
Q 032160 5 FLFWFLMSAINIAL---IASTFYQLL 27 (146)
Q Consensus 5 ~~~~i~a~ll~~~l---l~~~vy~li 27 (146)
-..|+++.++..+. +++.+||=|
T Consensus 4 wlt~iFsvvIil~If~~iGl~IyQki 29 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIGLSIYQKI 29 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678887776666 788888854
No 22
>PRK12592 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.27 E-value=74 Score=24.10 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcc-chhhhhh-hhHHHHHH
Q 032160 70 WIMFLLGVPLVCYHVNLYMKRKHLI-DVTEVFR-NLKVEKKF 109 (146)
Q Consensus 70 W~~~llnlPll~y~~~~y~~r~~l~-D~TeIf~-~L~~~kk~ 109 (146)
|+..++..|...+-+.|--.|.|.. |+.++++ +..++||+
T Consensus 82 ~~FlllT~Pvaah~iaRAAyr~g~~~~~~~~~~~~~~~~~~~ 123 (126)
T PRK12592 82 VLFALLTSPVTAQRVGRVSRREGLYGAKDTMSRNQAPAERKP 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCccccccccccchhhh
Confidence 4667888999999999988888886 8888888 66666665
No 23
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=26.90 E-value=1.9e+02 Score=19.06 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=20.7
Q ss_pred cchhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032160 94 IDVTEVFR-------NLKVEKKFRLAKLGFYVIFFALVIAKLAM 130 (146)
Q Consensus 94 ~D~TeIf~-------~L~~~kk~~~iKl~fyll~Ff~~ly~mi~ 130 (146)
+++.+.|= ..++.+|.+..+..++++++.+.+.++..
T Consensus 13 Ip~~~~fCS~~C~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 13 IPPDESFCSPKCREEYRKRQKRMRKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred CCcchhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 23444555566777777766655544443
No 24
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.24 E-value=3e+02 Score=22.21 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=42.6
Q ss_pred hhhhcCcchhHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHhh----ccCccchhhhhh------
Q 032160 42 ASSRINFWVEPEFLLQGLFCILLL----------VTGHWIMFLLGVPLVCYHVNLYMK----RKHLIDVTEVFR------ 101 (146)
Q Consensus 42 ~c~~lN~lv~pE~~~h~~l~~l~l----------l~g~W~~~llnlPll~y~~~~y~~----r~~l~D~TeIf~------ 101 (146)
-.++.|+..+|.+..+.+++.... .-.+|+-|.+-.-++--..+-|.+ ++|=.-+-.|||
T Consensus 84 ~t~k~n~~~lp~~w~~~~ls~~~~v~vllW~vL~~ia~~l~fGlvff~lSlf~~iy~n~~~rk~gEmSAYSVFN~nce~l 163 (181)
T KOG3249|consen 84 WTRKLNKLKLPDIWLMFSLSLKMWVIVLLWFVLAPIAHRLDFGLVFFLLSLFSIIYLNTGKRKRGEMSAYSVFNENCEEL 163 (181)
T ss_pred cccccccCCCchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHheecCCCCCCCccchhhhhccchhhc
Confidence 357899999999997766553221 122343333322222223334443 457788888888
Q ss_pred --hhHHHHHHHHHHH
Q 032160 102 --NLKVEKKFRLAKL 114 (146)
Q Consensus 102 --~L~~~kk~~~iKl 114 (146)
+++.++-||=++.
T Consensus 164 ~GTltAEqfERdir~ 178 (181)
T KOG3249|consen 164 PGTLTAEQFERDIRA 178 (181)
T ss_pred CCcccHHHHHHHHHc
Confidence 5777777665543
No 25
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=24.80 E-value=3e+02 Score=26.93 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCc------cc-----hhhhhh-hhHHHHHHHHHHHHHHHHH
Q 032160 53 EFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKRKHL------ID-----VTEVFR-NLKVEKKFRLAKLGFYVIF 120 (146)
Q Consensus 53 E~~~h~~l~~l~ll~g~W~~~llnlPll~y~~~~y~~r~~l------~D-----~TeIf~-~L~~~kk~~~iKl~fyll~ 120 (146)
++.-....++.+.+...|+..+.-+|.+++++.+-.+++.. .| .++.|+ -|++.-|.++.-++..+++
T Consensus 458 ~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~lL~~~L~~~~~~l~i~l~l 537 (1021)
T PF00873_consen 458 QFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRFFSKFDRFFDRLQRGYRRLLRWALRHPKLVLLIALLL 537 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccccccccccchhhhhhhhhhcccchhhhhhhh
Confidence 45555567778888899999999999999887554443221 01 111222 4556666666666666666
Q ss_pred HHHHHH
Q 032160 121 FALVIA 126 (146)
Q Consensus 121 Ff~~ly 126 (146)
++..++
T Consensus 538 ~i~s~~ 543 (1021)
T PF00873_consen 538 LILSLF 543 (1021)
T ss_dssp HHHHHH
T ss_pred hhhhhc
Confidence 655443
No 26
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=23.76 E-value=4.2e+02 Score=21.82 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCChHHhhhhcCcchhHHHHHHHH---------HHHHHHhhhHHHHHHH
Q 032160 5 FLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGL---------FCILLLVTGHWIMFLL 75 (146)
Q Consensus 5 ~~~~i~a~ll~~~ll~~~vy~li~l~DLe~D~iNP~d~c~~lN~lv~pE~~~h~~---------l~~l~ll~g~W~~~ll 75 (146)
...|..+.+++.+......++...-++.+.|..||--.---+-..+.+-...+.. .....-....++.+++
T Consensus 104 ~~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~w~lp~Vg~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~g~G~~l 183 (330)
T PF03595_consen 104 LVLWWIGVILHLVLSVIFVFRWFRKQPFKLEHINPSWFLPPVGIMVSAVAGANLGPALPGAQALWIIVISYFLFGIGFFL 183 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGGG-SSS-GGG--GGGHHHHTHHHHHHHHHHHHTT----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhheehhccCcccccccceeeeecchhHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777766665668888888876543333333333322222 1122222234445555
Q ss_pred HHHHHHHHHHHHhhcc
Q 032160 76 GVPLVCYHVNLYMKRK 91 (146)
Q Consensus 76 nlPll~y~~~~y~~r~ 91 (146)
.+.+..--.+|...++
T Consensus 184 ~l~~~~~~~~Rl~~~~ 199 (330)
T PF03595_consen 184 YLILFALVLYRLIFHG 199 (330)
T ss_dssp HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5555555566666654
No 27
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.36 E-value=33 Score=24.42 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhcc-CccchhhhhhhhHHHHHHHH
Q 032160 78 PLVCYHVNLYMKRK-HLIDVTEVFRNLKVEKKFRL 111 (146)
Q Consensus 78 Pll~y~~~~y~~r~-~l~D~TeIf~~L~~~kk~~~ 111 (146)
|+.+..++.-.+.+ .-++.++|+|.|+.-.+.|.
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 55667777777655 45888888888887766553
No 28
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=20.38 E-value=43 Score=22.37 Aligned_cols=27 Identities=19% Similarity=0.424 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032160 107 KKFRLAKLGFYVIFFALVIAKLAMAGFE 134 (146)
Q Consensus 107 kk~~~iKl~fyll~Ff~~ly~mi~~lv~ 134 (146)
++-++.|++ .+++|++..-|++|+.+.
T Consensus 5 ~~~~mtriV-LLISfiIlfgRl~Y~~I~ 31 (59)
T PF11119_consen 5 KNSRMTRIV-LLISFIILFGRLIYSAIG 31 (59)
T ss_pred ccchHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 344555554 456777777788888764
Done!