Query 032160
Match_columns 146
No_of_seqs 107 out of 224
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 66.2 7.8 0.00027 22.1 3.4 22 4-25 2-23 (32)
2 3eyy_A Putative iron uptake re 25.0 13 0.00044 26.7 -0.4 34 78-111 33-67 (145)
3 4b4a_A TATC, SEC-independent p 24.7 58 0.002 25.8 3.4 27 67-94 67-93 (249)
4 1mzb_A Ferric uptake regulatio 19.4 39 0.0013 23.6 1.2 36 77-112 33-69 (136)
5 3mwm_A ZUR, putative metal upt 18.2 14 0.00049 26.2 -1.4 34 78-111 29-63 (139)
6 3arc_I Photosystem II reaction 15.4 1.9E+02 0.0066 16.8 3.6 30 112-143 4-34 (38)
7 1dev_B SMAD anchor for recepto 15.4 42 0.0014 19.9 0.4 13 36-48 6-18 (41)
8 2w57_A Ferric uptake regulatio 15.0 42 0.0014 24.0 0.5 35 77-111 32-67 (150)
9 2fe3_A Peroxide operon regulat 15.0 54 0.0018 23.2 1.1 35 77-111 36-71 (145)
10 3cjs_B 50S ribosomal protein L 14.9 40 0.0014 22.1 0.3 13 36-48 31-43 (72)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=66.24 E-value=7.8 Score=22.09 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032160 4 IFLFWFLMSAINIALIASTFYQ 25 (146)
Q Consensus 4 ~~~~~i~a~ll~~~ll~~~vy~ 25 (146)
|+++|.+.++.+.+.+|..+++
T Consensus 2 Ea~vYt~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 2 ETITYVFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhhhh
Confidence 7889999998888888777654
No 2
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.95 E-value=13 Score=26.67 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhccC-ccchhhhhhhhHHHHHHHH
Q 032160 78 PLVCYHVNLYMKRKH-LIDVTEVFRNLKVEKKFRL 111 (146)
Q Consensus 78 Pll~y~~~~y~~r~~-l~D~TeIf~~L~~~kk~~~ 111 (146)
|+.++.++.-.++++ -+++++|+|+|+.-...|.
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 677888888888765 4899999999998777664
No 3
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=24.73 E-value=58 Score=25.82 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCcc
Q 032160 67 TGHWIMFLLGVPLVCYHVNLYMKRKHLI 94 (146)
Q Consensus 67 ~g~W~~~llnlPll~y~~~~y~~r~~l~ 94 (146)
.+-+..++++.|...|.+|++.+. |++
T Consensus 67 vs~~~g~~~a~P~ilyQiw~Fi~P-gLy 93 (249)
T 4b4a_A 67 ISLAVGFIIASPVILYQFWRFIEP-ALY 93 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-TTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 344678899999999999998864 444
No 4
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=19.42 E-value=39 Score=23.59 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhccC-ccchhhhhhhhHHHHHHHHH
Q 032160 77 VPLVCYHVNLYMKRKH-LIDVTEVFRNLKVEKKFRLA 112 (146)
Q Consensus 77 lPll~y~~~~y~~r~~-l~D~TeIf~~L~~~kk~~~i 112 (146)
-|+.+..++...++++ -++.++|+|+|+.-...+.+
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4677888888887654 58999999999988776643
No 5
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=18.22 E-value=14 Score=26.24 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhccC-ccchhhhhhhhHHHHHHHH
Q 032160 78 PLVCYHVNLYMKRKH-LIDVTEVFRNLKVEKKFRL 111 (146)
Q Consensus 78 Pll~y~~~~y~~r~~-l~D~TeIf~~L~~~kk~~~ 111 (146)
|+.+..++.-.++++ -++.++|+|+|+.-...+.
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 566777777777554 4889999998887766554
No 6
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=15.38 E-value=1.9e+02 Score=16.80 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=17.3
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhccCCCCCCC
Q 032160 112 AKLGFY-VIFFALVIAKLAMAGFEALAGKDENP 143 (146)
Q Consensus 112 iKl~fy-ll~Ff~~ly~mi~~lv~~~~~~~~~~ 143 (146)
.|+.-| .+.||++++ |.-.++++|+-.-+|
T Consensus 4 LKi~Vy~vV~ffvsLF--iFGfLsnDP~RNP~r 34 (38)
T 3arc_I 4 LKITVYIVVTFFVLLF--VFGFLSGDPARNPKR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHTTGGGCSSSC
T ss_pred EEeeehhHHHHHHHHH--HccccCCCCCCCCCc
Confidence 355544 456666665 556677776644333
No 7
>1dev_B SMAD anchor for receptor activation; beta sheet, three-helix bundle, signaling protein; 2.20A {Homo sapiens} SCOP: j.64.1.1 PDB: 1mk2_B
Probab=15.35 E-value=42 Score=19.89 Aligned_cols=13 Identities=38% Similarity=0.217 Sum_probs=10.6
Q ss_pred cCChHHhhhhcCc
Q 032160 36 DINPFEASSRINF 48 (146)
Q Consensus 36 ~iNP~d~c~~lN~ 48 (146)
=.||+|.|+.+-+
T Consensus 6 PNnPmEYCStiPP 18 (41)
T 1dev_B 6 PNNPAEYCSTIPP 18 (41)
T ss_dssp TTCGGGTCBCSCH
T ss_pred CCCcchhhccCCc
Confidence 3699999998765
No 8
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=15.01 E-value=42 Score=24.01 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhccC-ccchhhhhhhhHHHHHHHH
Q 032160 77 VPLVCYHVNLYMKRKH-LIDVTEVFRNLKVEKKFRL 111 (146)
Q Consensus 77 lPll~y~~~~y~~r~~-l~D~TeIf~~L~~~kk~~~ 111 (146)
-|+.++.++...++++ -+++++|+|+|+.-...|.
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3678888888887654 5899999999988776654
No 9
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=14.97 E-value=54 Score=23.17 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhccC-ccchhhhhhhhHHHHHHHH
Q 032160 77 VPLVCYHVNLYMKRKH-LIDVTEVFRNLKVEKKFRL 111 (146)
Q Consensus 77 lPll~y~~~~y~~r~~-l~D~TeIf~~L~~~kk~~~ 111 (146)
-|+.+..++...++++ -++.++|+|.|+.-...|.
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3778888888888665 4899999999988776654
No 10
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=14.85 E-value=40 Score=22.11 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=11.2
Q ss_pred cCChHHhhhhcCc
Q 032160 36 DINPFEASSRINF 48 (146)
Q Consensus 36 ~iNP~d~c~~lN~ 48 (146)
=+|+.|+|+.+|.
T Consensus 31 Gvni~~f~k~fN~ 43 (72)
T 3cjs_B 31 GANIMEFVKAFNA 43 (72)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999995
Done!